Citrus Sinensis ID: 021311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIKF
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEcccHHHHHHHHcccccccccccccccEEEEEEEEEcccccccccccEEEEccccccccccEEEEccccEEEccccccHHHHHcccccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHccccEEEccccccHHHHHHHHcccccccEEEEccccHHHHHHHHccccccEEEEEccccccccccccHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHcccEEccEEEEccccHHHHHHHHHHcccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEccccccccEEEEEEEEEEccHHHHHHHHccccccccccEccccEEEEEEEEEcccccccccccEEEEccccccccEcEEEEcccccccccccccHHHHHHccHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHccccccEEEEccccccccEEEcHHHHHHcccEEEEccHHHHccccHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEc
Coil and Loop (DISEMBL)
mielppvevkeNDVCVKMLaapinpsdinriegvypvrpkvpavggyegvgEVYSVGsavtrlapgdwvipsppssgtwqsyvvkdqsvwhkvskdspmEYAATIIVNPLTALRMledfttlnsgdsivqngatsIVGQCIIQIARHRGIHSINIirdragsdEAKEKLKglgadevfteSQLEVKNVKGllanlpepalgfncvggnsASKVLKFLSqggtmvtyggmskkpitvstsaFIFKDLSLKGFWLQKwlssekateCRNMIDYLLCLAREgklkydmelvpfnNFQTALSKAlglhgsqpkqvikf
Flexible Loop (DISEMBL)
mielppvevKENDVCVKMLAapinpsdinriegvypvRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHkvskdspmeYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGlgadevftesQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKAlglhgsqpkqvikf
Low Complexity Region (SEG)
MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPavggyegvgevysvgsavTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIKF
Disordered region (IsUnstruct)
***********NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD**************GADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALG************
Disordered Region (DISOPRED)
MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIKF
Disordered Region (DISEMBL)
MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGL***********
Disordered Region (DISPRO)
MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIKF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q8LCU7	375	Probable trans-2-enoyl-Co	yes	no	1.0	0.837	0.799	1e-150
Q9Z311	373	Trans-2-enoyl-CoA reducta	yes	no	0.933	0.785	0.496	5e-78
Q9DCS3	373	Trans-2-enoyl-CoA reducta	yes	no	0.933	0.785	0.486	1e-76
Q9BV79	373	Trans-2-enoyl-CoA reducta	yes	no	0.958	0.806	0.468	2e-75
Q7YS70	373	Trans-2-enoyl-CoA reducta	yes	no	0.910	0.766	0.480	3e-72
Q6GQN8	377	Trans-2-enoyl-CoA reducta	yes	no	0.949	0.790	0.455	7e-71
Q28GQ2	350	Trans-2-enoyl-CoA reducta	no	no	0.863	0.774	0.5	4e-66
Q9V6U9	357	Probable trans-2-enoyl-Co	yes	no	0.961	0.845	0.449	6e-66
Q54YT4	350	Trans-2-enoyl-CoA reducta	yes	no	0.933	0.837	0.418	3e-64
O45903	344	Probable trans-2-enoyl-Co	yes	no	0.847	0.773	0.459	2e-63

>sp|Q8LCU7|MECR_ARATH Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1

 Score =  532 bits (1370), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/314 (79%), Positives = 278/314 (88%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++ LPPVEVKENDVCVKM+AAPINPSDINRIEGVYPVRP VPAVGGYEGVGEVY+VGS V
Sbjct: 62  LVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPVRPPVPAVGGYEGVGEVYAVGSNV 121

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
              +PGDWVIPSPPSSGTWQ+YVVK++SVWHK+ K+ PMEYAATI VNPLTALRMLEDF 
Sbjct: 122 NGFSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDKECPMEYAATITVNPLTALRMLEDFV 181

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            LNSGDS+VQNGATSIVGQC+IQ+AR RGI +IN+IRDRAGSDEA+E+LK LGADEVF+E
Sbjct: 182 NLNSGDSVVQNGATSIVGQCVIQLARLRGISTINLIRDRAGSDEAREQLKALGADEVFSE 241

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQL VKNVK LL NLPEPALGFNCVGGN+AS VLK+L +GGTMVTYGGMSKKPITVST++
Sbjct: 242 SQLNVKNVKSLLGNLPEPALGFNCVGGNAASLVLKYLREGGTMVTYGGMSKKPITVSTTS 301

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDL+L+GFWLQ WLS  K  ECR MIDYLL LAR+GKLKY+ ELVPF  F  AL KA
Sbjct: 302 FIFKDLALRGFWLQSWLSMGKVKECREMIDYLLGLARDGKLKYETELVPFEEFPVALDKA 361

Query: 301 LGLHGSQPKQVIKF 314
           LG  G QPKQVI F
Sbjct: 362 LGKLGRQPKQVITF 375

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 8

>sp|Q9Z311|MECR_RAT Trans-2-enoyl-CoA reductase, mitochondrial OS=Rattus norvegicus GN=Mecr PE=2 SV=1

 Score =  291 bits (744), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 146/294 (49%), Positives = 197/294 (67%), Gaps = 1/294 (0%)

Query: 9   VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDW 68
           V+ +DV VKMLAAPINPSDIN I+G Y + PK+PAVGG EGVG+V +VGS+V+ L PGDW
Sbjct: 68  VEGSDVHVKMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVIAVGSSVSGLKPGDW 127

Query: 69  VIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSI 128
           VIP+    GTW++  V  +     V KD P++ AAT+ VNP TA RML DF  L  GDS+
Sbjct: 128 VIPANAGLGTWRTEAVFSEEALIGVPKDIPLQSAATLGVNPCTAYRMLVDFEQLQPGDSV 187

Query: 129 VQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV 188
           +QN + S VGQ +IQIA   G+ +IN+IRDR    +  ++LK LGAD V TE +L +   
Sbjct: 188 IQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLTDRLKDLGADYVLTEEELRMPET 247

Query: 189 KGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSL 248
           K +  +LP P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+T S S  IFKDL L
Sbjct: 248 KNIFKDLPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVTASVSMLIFKDLKL 307

Query: 249 KGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKAL 301
           +GFWL +W  +    E + +I  L  L R+G+L       +P  ++Q AL  ++
Sbjct: 308 RGFWLSQWKKNHSPDEFKELILILCNLIRQGQLTAPAWSGIPLQDYQQALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9DCS3|MECR_MOUSE Trans-2-enoyl-CoA reductase, mitochondrial OS=Mus musculus GN=Mecr PE=2 SV=2

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/294 (48%), Positives = 195/294 (66%), Gaps = 1/294 (0%)

Query: 9   VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDW 68
           V+ +DV V+MLAAPINPSDIN I+G Y + PK+PAVGG EGVG+V +VGS+V+ L PGDW
Sbjct: 68  VEGSDVHVRMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVIAVGSSVSALKPGDW 127

Query: 69  VIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSI 128
           VIP+    GTW++  V  +     + KD P++ AAT+ VNP TA RML DF  L  GDS+
Sbjct: 128 VIPANAGLGTWRTEAVFSEEALIGIPKDIPLQSAATLGVNPCTAYRMLVDFEQLQPGDSV 187

Query: 129 VQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV 188
           +QN + S VGQ +IQIA    + +IN++RDR    +  ++LK LGAD V TE +L +   
Sbjct: 188 IQNASNSGVGQAVIQIASALRLKTINVVRDRPDIKKLTDRLKDLGADYVLTEEELRMPET 247

Query: 189 KGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSL 248
           K +  +LP P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+T S S  IFKDL L
Sbjct: 248 KTIFKDLPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVTASVSLLIFKDLKL 307

Query: 249 KGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY-DMELVPFNNFQTALSKAL 301
           +GFWL +W  +    E + +I  L  L R+G+L       VP   +Q AL  ++
Sbjct: 308 RGFWLSQWKKNHSPDEFKELILTLCNLIRQGRLTAPSCSEVPLQGYQQALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9BV79|MECR_HUMAN Trans-2-enoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=MECR PE=1 SV=2

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/305 (46%), Positives = 199/305 (65%), Gaps = 4/305 (1%)

Query: 1   MIELPPVE---VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVG 57
           ++EL  +E   V+ +DV VKMLAAPINPSDIN I+G Y   P++PAVGG EGV +V +VG
Sbjct: 57  VVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGFLPELPAVGGNEGVAQVVAVG 116

Query: 58  SAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
           S VT L PGDWVIP+    GTW++  V  +    +V  D P++ AAT+ VNP TA RML 
Sbjct: 117 SNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLM 176

Query: 118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           DF  L  GDS++QN + S VGQ +IQIA   G+ +IN++RDR    +  ++LK LGA+ V
Sbjct: 177 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHV 236

Query: 178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
            TE +L    +K    ++P+P L  NCVGG S++++L+ L++GGTMVTYGGM+K+P+  S
Sbjct: 237 ITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVAS 296

Query: 238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTA 296
            S  IFKDL L+GFWL +W       + + +I  L  L R G+L       VP  ++Q+A
Sbjct: 297 VSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSA 356

Query: 297 LSKAL 301
           L  ++
Sbjct: 357 LEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q7YS70|MECR_BOVIN Trans-2-enoyl-CoA reductase, mitochondrial OS=Bos taurus GN=MECR PE=1 SV=1

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/287 (48%), Positives = 185/287 (64%), Gaps = 1/287 (0%)

Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP 71
           + V VKMLAAPINPSDIN I+G Y + P++PAVGG EGVG+V +VGS VT + PGDWVIP
Sbjct: 71  SHVHVKMLAAPINPSDINMIQGNYGLLPQLPAVGGNEGVGQVVAVGSGVTGVKPGDWVIP 130

Query: 72  SPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN 131
           + P  GTW++  V  +     V  D P++ AAT+ VNP TA RML DF  L   DSI+QN
Sbjct: 131 ANPGLGTWRTEAVFGEEELITVPSDIPLQSAATLGVNPCTAYRMLVDFERLRPRDSIIQN 190

Query: 132 GATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGL 191
            + S VGQ +IQIA  RG+ +IN++RD     +  + LK LGA+ V TE +L    +K  
Sbjct: 191 ASNSGVGQAVIQIAAARGLRTINVLRDTPDLQKLTDTLKNLGANHVVTEEELRKPEMKSF 250

Query: 192 LANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGF 251
             ++P+P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+  S S  IFKDL L+GF
Sbjct: 251 FKDVPQPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVIASVSQLIFKDLKLRGF 310

Query: 252 WLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTAL 297
           WL +W       + + +I  L  L R G+L       VP  ++  AL
Sbjct: 311 WLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSEVPLQDYLCAL 357

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q6GQN8|MECR_DANRE Trans-2-enoyl-CoA reductase, mitochondrial OS=Danio rerio GN=mecr PE=2 SV=2

 Score =  267 bits (683), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 138/303 (45%), Positives = 189/303 (62%), Gaps = 5/303 (1%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           ++LP  +V    V VKMLAAPINPSD+N ++G Y + P++PAVGG EGV +V  VG  V 
Sbjct: 65  LDLP--QVGAECVLVKMLAAPINPSDLNMLQGTYAILPELPAVGGNEGVAQVMEVGDKVK 122

Query: 62  RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
            L  GDWVIP     GTW++  V        + KD P+  AAT+ VNP TA RML DF  
Sbjct: 123 TLKVGDWVIPKDAGIGTWRTAAVLKADDLVTLPKDIPVLSAATLGVNPCTAYRMLTDFEE 182

Query: 122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES 181
           L +GD+++QN A S VGQ +IQIA  +GIH+IN+IRDR    +  ++L  +GA  V TE 
Sbjct: 183 LKAGDTVIQNAANSGVGQAVIQIAAAKGIHTINVIRDRPDLRQLSDRLTAMGATHVITEE 242

Query: 182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF 241
            L    +K L  + P P L  N VGG SA+++L+ L  GG++VTYGGM+K+P+TV  SA 
Sbjct: 243 TLRRPEMKELFKSCPRPKLALNGVGGKSATELLRHLQSGGSLVTYGGMAKQPVTVPVSAL 302

Query: 242 IFKDLSLKGFWLQKWLSSEKATE--CRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALS 298
           IFKD+ ++GFW+ +W    +  +   R+M+D L  L R GKL   +   V   +F+ AL 
Sbjct: 303 IFKDVRVRGFWVTQWKRDNRHDDEALRHMLDELCILIRAGKLSAPICTQVQLQDFRKALE 362

Query: 299 KAL 301
            A+
Sbjct: 363 NAM 365

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q28GQ2|MECR_XENTR Trans-2-enoyl-CoA reductase, mitochondrial OS=Xenopus tropicalis GN=mecr PE=2 SV=1

 Score =  251 bits (642), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 137/274 (50%), Positives = 175/274 (63%), Gaps = 3/274 (1%)

Query: 11  ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVI 70
           +N+V VKMLAAPINPSDIN ++G Y + P++PAVGG EGVG V  +G  V+ + PGDWV+
Sbjct: 44  DNEVRVKMLAAPINPSDINMVQGTYALLPQLPAVGGNEGVGVVVEIGRHVSSMRPGDWVV 103

Query: 71  PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQ 130
           P     GTW +  V  +    +V  D P+  AAT+ VNP TA R+L DF TL  GD+I+Q
Sbjct: 104 PVDAGLGTWCTEAVFSEDSLVRVPSDIPVAGAATVSVNPCTAYRLLSDFETLRPGDTIIQ 163

Query: 131 NGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKG 190
           N + S VGQ +IQIA   GI +IN++RDR       ++L+ LGAD V TE QL    +K 
Sbjct: 164 NASNSGVGQAVIQIATSLGITTINVVRDREDLSSLIQRLRDLGADHVITEEQLRKPEMKD 223

Query: 191 LLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
           L  N P P L  NCVGG S +++L+ L  GGTMVTYGGMSK+P+TV  SA IFK++ L G
Sbjct: 224 LFKNCPRPRLALNCVGGKSTTEMLRHLDYGGTMVTYGGMSKQPVTVPVSALIFKNVKLCG 283

Query: 251 FWLQKWLSSEKAT---ECRNMIDYLLCLAREGKL 281
           FW+ +W      T   E   MI  L  L R GKL
Sbjct: 284 FWVTQWKKERAQTDREEIVKMIRDLCDLIRRGKL 317

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids (By similarity). Functions in pronephros development, regulating late differentiation of all pronephric tubule segments.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9V6U9|MECR_DROME Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Drosophila melanogaster GN=CG16935 PE=3 SV=2

 Score =  251 bits (640), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 137/305 (44%), Positives = 186/305 (60%), Gaps = 3/305 (0%)

Query: 10  KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWV 69
           K+N V VK+LAAPINP+DIN I+G YPV+PK PAVGG E V EV  VG  V     G  V
Sbjct: 49  KDNQVLVKILAAPINPADINTIQGKYPVKPKFPAVGGNECVAEVICVGDKVKGFEAGQHV 108

Query: 70  IPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIV 129
           IP     GTW ++ V  +     VSK   +  AAT  VNP TA RML+DF  L  GD+++
Sbjct: 109 IPLASGLGTWTTHAVYKEDQLLIVSKKVGLAEAATSTVNPTTAYRMLKDFVQLCPGDTVI 168

Query: 130 QNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK 189
           QNGA S VGQ + Q+ R  GI+S+ I+RDR    E K+ L+ LGA EV TE+++   ++ 
Sbjct: 169 QNGANSAVGQAVHQLCRAWGINSVGIVRDRPEIAELKQMLQCLGATEVLTEAEIRTSDIF 228

Query: 190 GLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLK 249
                L +P L FNCVGG SA++V + L  GG +VTYGGMS++P+TV+T   IFKD++ +
Sbjct: 229 K-SGKLKKPRLAFNCVGGKSATEVSRHLDNGGVLVTYGGMSREPVTVATGPLIFKDIAFR 287

Query: 250 GFWLQKWLSSEKATECRN-MIDYLLCLAREGKL-KYDMELVPFNNFQTALSKALGLHGSQ 307
           GFW+ +W     ++  R+ M   +  L  +GK    + E+VP   F+ A + AL   G  
Sbjct: 288 GFWMTRWSKENYSSPERSKMFKEIFELMEQGKFVAPNHEMVPLAKFKDAAAAALSFKGFT 347

Query: 308 PKQVI 312
            K+ I
Sbjct: 348 GKKYI 352

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q54YT4|MECR_DICDI Trans-2-enoyl-CoA reductase, mitochondrial OS=Dictyostelium discoideum GN=mecr PE=3 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 181/294 (61%), Gaps = 1/294 (0%)

Query: 8   EVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGD 67
           ++   DV V+ML APINP+D+N I+G Y    +V  V G EGVG V  VGS VT L   D
Sbjct: 42  KISNKDVLVEMLHAPINPADLNIIQGTYGTNVQVGGVAGMEGVGVVKKVGSGVTGLKEND 101

Query: 68  WVIPSPPSS-GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGD 126
            V+PS     G+W+S  V  +    KV  D P EY +TI +NP TA  +L DF  L  GD
Sbjct: 102 LVVPSMKQHFGSWRSKGVWSEQQLFKVPSDIPTEYLSTISINPTTAYLLLNDFVKLQQGD 161

Query: 127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVK 186
            I+QN + S+VG  +IQ+A+ RGI +IN+IRD +  ++  ++LK LG D V +E  +   
Sbjct: 162 VIIQNASNSMVGLSVIQLAKARGIKTINVIRDGSEFEDNVQRLKQLGGDIVVSEEYVRTP 221

Query: 187 NVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDL 246
             + L+++LP P L  N VGG SA+++ + L+  GT+VTYGGMS++P+T+ TS  IF+++
Sbjct: 222 AFRKLISDLPSPKLALNAVGGQSATELSRILADNGTLVTYGGMSREPVTIPTSQLIFRNI 281

Query: 247 SLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
            ++GFWL KW      +E +++ D +  L R+ + K  +E   F+ F  AL K+
Sbjct: 282 QIRGFWLNKWFEQHTDSEKQSVYDAIFDLIRKKQFKLLIEKHKFSEFDQALLKS 335

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|O45903|MECR1_CAEEL Probable trans-2-enoyl-CoA reductase 1, mitochondrial OS=Caenorhabditis elegans GN=W09H1.5 PE=3 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/272 (45%), Positives = 171/272 (62%), Gaps = 6/272 (2%)

Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP 71
           + V V+ +AAPINP+D+N+I+GVYPV+P +PAVGG EG G+V SVGS V+ +  GD VIP
Sbjct: 46  DQVLVQWIAAPINPADLNQIQGVYPVKPALPAVGGNEGFGKVISVGSNVSSIKVGDHVIP 105

Query: 72  SPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN 131
                GTW+   +  ++    +     MEYAAT  VNP TA RML+DF  L  GD++ QN
Sbjct: 106 DRSGLGTWRELGLHQENDLFPIDNTLSMEYAATFQVNPPTAYRMLKDFIDLKKGDTVAQN 165

Query: 132 GATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGL 191
           GA S VG+ +IQI R  GI ++N++R R   +E  ++LK LGADEV T+ +L  +  K  
Sbjct: 166 GANSAVGKHVIQICRILGIKTVNVVRSRDNLEELVKELKDLGADEVITQEELYSRKKK-- 223

Query: 192 LANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGF 251
               P   L  NCVGG S+  +   L  GG MVTYGGMSK+P+   T   IFKD+SL+GF
Sbjct: 224 ---FPGVKLALNCVGGRSSLFLASLLDHGGCMVTYGGMSKQPVDCPTGPLIFKDISLRGF 280

Query: 252 WLQKWLSSEKATECRN-MIDYLLCLAREGKLK 282
           W+ +W   +K+ E R+ M   L    + G++K
Sbjct: 281 WMSRWYDIQKSPEKRHEMYQELAGWMKSGEIK 312

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
297746179	335	unnamed protein product [Vitis vinifera]	1.0	0.937	0.856	1e-158
359479028	373	PREDICTED: probable trans-2-enoyl-CoA re	1.0	0.841	0.856	1e-158
255578755	379	zinc binding dehydrogenase, putative [Ri	1.0	0.828	0.840	1e-158
224120990	368	predicted protein [Populus trichocarpa]	1.0	0.853	0.834	1e-155
118481570	368	unknown [Populus trichocarpa]	1.0	0.853	0.834	1e-155
239909313	380	trans-2-enoyl CoA reductase [Jatropha cu	0.971	0.802	0.839	1e-152
449462097	369	PREDICTED: probable trans-2-enoyl-CoA re	1.0	0.850	0.815	1e-151
18408069	375	putative trans-2-enoyl-CoA reductase [Ar	1.0	0.837	0.799	1e-149
17064956	375	oxidoreductase of zinc-binding dehydroge	1.0	0.837	0.796	1e-148
297819102	376	oxidoreductase [Arabidopsis lyrata subsp	1.0	0.835	0.792	1e-147

>gi|297746179|emb|CBI16235.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/314 (85%), Positives = 291/314 (92%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP VPAVGGYEGVGEV+S+GSAV
Sbjct: 22  VVELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPHVPAVGGYEGVGEVHSLGSAV 81

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
             L+PGDWVIPSPPSSGTWQ+YVVK+QSVWHK++KD PMEYAAT+ +NPLTALRMLEDF 
Sbjct: 82  KGLSPGDWVIPSPPSSGTWQTYVVKEQSVWHKINKDVPMEYAATVTINPLTALRMLEDFG 141

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            LN GD+IVQNGATSIVGQCIIQ+AR RGIHSINIIRDR GSDE KEKLKGLGADEVFTE
Sbjct: 142 NLNPGDAIVQNGATSIVGQCIIQLARIRGIHSINIIRDRVGSDEVKEKLKGLGADEVFTE 201

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQLEVKNVKGLLANLPEPALGFNCVGGNSA+ VLKFL QGGTMVTYGGMSKKPITVSTS+
Sbjct: 202 SQLEVKNVKGLLANLPEPALGFNCVGGNSATLVLKFLRQGGTMVTYGGMSKKPITVSTSS 261

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDLSL+GFWLQKW+SS+KA E R MIDYLL L +EGK+KY+MELVPF+NF  AL KA
Sbjct: 262 FIFKDLSLRGFWLQKWMSSDKAKESRKMIDYLLGLTQEGKIKYEMELVPFSNFHAALDKA 321

Query: 301 LGLHGSQPKQVIKF 314
           LG  GSQPKQVIKF
Sbjct: 322 LGKFGSQPKQVIKF 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479028|ref|XP_002284705.2| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial [Vitis vinifera]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/314 (85%), Positives = 291/314 (92%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP VPAVGGYEGVGEV+S+GSAV
Sbjct: 60  VVELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPHVPAVGGYEGVGEVHSLGSAV 119

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
             L+PGDWVIPSPPSSGTWQ+YVVK+QSVWHK++KD PMEYAAT+ +NPLTALRMLEDF 
Sbjct: 120 KGLSPGDWVIPSPPSSGTWQTYVVKEQSVWHKINKDVPMEYAATVTINPLTALRMLEDFG 179

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            LN GD+IVQNGATSIVGQCIIQ+AR RGIHSINIIRDR GSDE KEKLKGLGADEVFTE
Sbjct: 180 NLNPGDAIVQNGATSIVGQCIIQLARIRGIHSINIIRDRVGSDEVKEKLKGLGADEVFTE 239

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQLEVKNVKGLLANLPEPALGFNCVGGNSA+ VLKFL QGGTMVTYGGMSKKPITVSTS+
Sbjct: 240 SQLEVKNVKGLLANLPEPALGFNCVGGNSATLVLKFLRQGGTMVTYGGMSKKPITVSTSS 299

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDLSL+GFWLQKW+SS+KA E R MIDYLL L +EGK+KY+MELVPF+NF  AL KA
Sbjct: 300 FIFKDLSLRGFWLQKWMSSDKAKESRKMIDYLLGLTQEGKIKYEMELVPFSNFHAALDKA 359

Query: 301 LGLHGSQPKQVIKF 314
           LG  GSQPKQVIKF
Sbjct: 360 LGKFGSQPKQVIKF 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578755|ref|XP_002530235.1| zinc binding dehydrogenase, putative [Ricinus communis] gi|223530239|gb|EEF32141.1| zinc binding dehydrogenase, putative [Ricinus communis]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/314 (84%), Positives = 291/314 (92%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++E+PPVEVK+ DVCVKMLAAPINPSDINRIEGVYPVRP VPAVGGYEGVGEV+SVGSAV
Sbjct: 66  VVEMPPVEVKDKDVCVKMLAAPINPSDINRIEGVYPVRPPVPAVGGYEGVGEVHSVGSAV 125

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
              +PGDWVIPSPP+ GTWQ+Y+V+DQSVWHK++KDSPM+YAATI VNPLTALRMLEDFT
Sbjct: 126 KDFSPGDWVIPSPPTFGTWQTYIVQDQSVWHKINKDSPMKYAATITVNPLTALRMLEDFT 185

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
           TLNSGDS+VQNGATSIVGQCIIQIA+  GIHSINI+RDR GSDEAKE LK LGADEVFTE
Sbjct: 186 TLNSGDSVVQNGATSIVGQCIIQIAKFHGIHSINILRDRPGSDEAKEFLKELGADEVFTE 245

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
            QL VKNVKGLL NLPEPALGFNCVGGNSAS VLKFL QGGTMVTYGGMSKKP+TVSTS+
Sbjct: 246 GQLAVKNVKGLLTNLPEPALGFNCVGGNSASLVLKFLRQGGTMVTYGGMSKKPVTVSTSS 305

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDLSL+GFWLQKW++S+KA ECRNMIDYLLCLA+EGKLKY+MELVPF++F  AL KA
Sbjct: 306 FIFKDLSLRGFWLQKWMTSDKAKECRNMIDYLLCLAQEGKLKYEMELVPFDDFHVALDKA 365

Query: 301 LGLHGSQPKQVIKF 314
           LG  GSQPKQV+KF
Sbjct: 366 LGKLGSQPKQVLKF 379

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120990|ref|XP_002330876.1| predicted protein [Populus trichocarpa] gi|222872698|gb|EEF09829.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 262/314 (83%), Positives = 287/314 (91%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           +IE+  VEVKE DVCVKM+AAPINPSDINRIEGVYPVRP +PA+GGYEGVGEV SVGSAV
Sbjct: 55  VIEMEGVEVKEKDVCVKMMAAPINPSDINRIEGVYPVRPPLPAIGGYEGVGEVLSVGSAV 114

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
             L+PGDWVIPSPPSSGTWQ+Y+VK++SVWHK+SKDSP+EYAATI VNPLTALRML+DF 
Sbjct: 115 KHLSPGDWVIPSPPSSGTWQTYIVKEESVWHKISKDSPIEYAATITVNPLTALRMLQDFV 174

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
           TLNSGD IVQNGATSIVGQCIIQ+ARHRGIHSINIIRDR GSDEAKE LK LGADEVFTE
Sbjct: 175 TLNSGDCIVQNGATSIVGQCIIQLARHRGIHSINIIRDRVGSDEAKEMLKRLGADEVFTE 234

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQLEVKN+KGLL NLPEPALGFNCVGGNSAS VLKFL  GGTMVTYGGMSKKPIT+STS+
Sbjct: 235 SQLEVKNIKGLLTNLPEPALGFNCVGGNSASLVLKFLRHGGTMVTYGGMSKKPITISTSS 294

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDLSL+GFWLQK ++S+K  ECRN ID+LLCLAREGKLKY+MELV F +F TAL KA
Sbjct: 295 FIFKDLSLRGFWLQKLMNSDKVNECRNSIDHLLCLAREGKLKYEMELVSFGDFHTALDKA 354

Query: 301 LGLHGSQPKQVIKF 314
           LG  GSQPKQV+KF
Sbjct: 355 LGKLGSQPKQVLKF 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481570|gb|ABK92727.1| unknown [Populus trichocarpa]

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 262/314 (83%), Positives = 286/314 (91%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           +IE+  VEVKE DVCVKM+AAPINPSDINRIEGVYPVRP +PA+GGYEGVGEV SVGSAV
Sbjct: 55  VIEMEGVEVKEKDVCVKMMAAPINPSDINRIEGVYPVRPPLPAIGGYEGVGEVLSVGSAV 114

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
             L+PGDWVIPSPPSSGTWQ+Y+VK++SVWHK+SKDSP+EYAATI VNPLTALRML+DF 
Sbjct: 115 KHLSPGDWVIPSPPSSGTWQTYIVKEESVWHKISKDSPIEYAATITVNPLTALRMLQDFV 174

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
           TLNSGD IVQNGATSIVGQCIIQ+ARHRGIHSINIIRDR GSDEAKE LK LGADEVFTE
Sbjct: 175 TLNSGDCIVQNGATSIVGQCIIQLARHRGIHSINIIRDRVGSDEAKEMLKRLGADEVFTE 234

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQLEVKN+KGLL NLPEPALGFNCVGGNSAS VLKFL  GGTMVTYGGMSKKPIT STS+
Sbjct: 235 SQLEVKNIKGLLTNLPEPALGFNCVGGNSASLVLKFLRHGGTMVTYGGMSKKPITTSTSS 294

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDLSL+GFWLQK ++S+K  ECRN ID+LLCLAREGKLKY+MELV F +F TAL KA
Sbjct: 295 FIFKDLSLRGFWLQKLMNSDKVNECRNSIDHLLCLAREGKLKYEMELVSFGDFHTALDKA 354

Query: 301 LGLHGSQPKQVIKF 314
           LG  GSQPKQV+KF
Sbjct: 355 LGKLGSQPKQVLKF 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239909313|gb|ACS32302.1| trans-2-enoyl CoA reductase [Jatropha curcas]

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/305 (83%), Positives = 281/305 (92%)

Query: 10  KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWV 69
           K NDVCVKMLA+PINPSDINRIEGVYPVRP VPAVGGYEGVGEV+SVGSAV  L+PGDWV
Sbjct: 76  KANDVCVKMLASPINPSDINRIEGVYPVRPSVPAVGGYEGVGEVHSVGSAVKDLSPGDWV 135

Query: 70  IPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIV 129
           IPSPPS GTWQ+Y+V+DQSVWHK++K+SPMEYAAT+ VNPLTALRMLEDFT+LNSGDS+V
Sbjct: 136 IPSPPSFGTWQTYIVQDQSVWHKINKESPMEYAATVTVNPLTALRMLEDFTSLNSGDSVV 195

Query: 130 QNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK 189
           QNGATSIVGQC+IQIA+ RGI SINI+RDR GSDEAKE LK LGADEVFTESQLEVKNVK
Sbjct: 196 QNGATSIVGQCVIQIAKFRGIRSINILRDRPGSDEAKETLKKLGADEVFTESQLEVKNVK 255

Query: 190 GLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLK 249
           GLL NLPEPALGFNCVGGN+AS VLKFL QGGTMVTYGGMSKKP+TVSTS+F FKDL+L+
Sbjct: 256 GLLTNLPEPALGFNCVGGNAASLVLKFLRQGGTMVTYGGMSKKPVTVSTSSFTFKDLTLR 315

Query: 250 GFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPK 309
           GFWLQKWL+SEKA ECRNMIDYL  LA+E KLKY+ME VPF+NF TAL KALG  GSQPK
Sbjct: 316 GFWLQKWLTSEKAKECRNMIDYLPSLAQEEKLKYEMEPVPFDNFHTALDKALGKLGSQPK 375

Query: 310 QVIKF 314
           QV+KF
Sbjct: 376 QVLKF 380

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462097|ref|XP_004148778.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Cucumis sativus] gi|449527392|ref|XP_004170695.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Cucumis sativus]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/314 (81%), Positives = 289/314 (92%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           +I LPPVE+K NDVCVKMLAAPINPSDINRIEGVYPVRP+VPAVGGYEGVGEV+SVG+AV
Sbjct: 56  VINLPPVEMKANDVCVKMLAAPINPSDINRIEGVYPVRPEVPAVGGYEGVGEVHSVGNAV 115

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
             L+PGDWVIPSPPSSGTWQ+YVVKDQSVWHK++K+ PMEYAAT+ VNPLTALRMLEDF 
Sbjct: 116 QGLSPGDWVIPSPPSSGTWQTYVVKDQSVWHKINKEVPMEYAATVTVNPLTALRMLEDFV 175

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
           +L +GDS+VQNGATSIVGQCIIQ+A+ RGIHSINIIRDRAGSD++KEKLK LGADE+F+E
Sbjct: 176 SLKAGDSVVQNGATSIVGQCIIQLAKIRGIHSINIIRDRAGSDKSKEKLKRLGADEIFSE 235

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQLEVKNVK LLANLPEPALGFNCVGGN+A+ VLKFL QGGTMVTYGGMSKKPITVSTS+
Sbjct: 236 SQLEVKNVKSLLANLPEPALGFNCVGGNAATLVLKFLRQGGTMVTYGGMSKKPITVSTSS 295

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKD+SL+GFWLQK +  +KA E R +IDYLL LAR+ KLKY+ME+VPF+NF  AL+KA
Sbjct: 296 FIFKDVSLRGFWLQKLMGIDKANESRKLIDYLLDLARQEKLKYEMEVVPFDNFHIALNKA 355

Query: 301 LGLHGSQPKQVIKF 314
           LG  GSQPKQVIKF
Sbjct: 356 LGKQGSQPKQVIKF 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408069|ref|NP_566881.1| putative trans-2-enoyl-CoA reductase [Arabidopsis thaliana] gi|62900587|sp|Q8LCU7.1|MECR_ARATH RecName: Full=Probable trans-2-enoyl-CoA reductase, mitochondrial; Flags: Precursor gi|21592515|gb|AAM64465.1| nuclear receptor binding factor-like protein [Arabidopsis thaliana] gi|332644550|gb|AEE78071.1| putative trans-2-enoyl-CoA reductase [Arabidopsis thaliana]

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/314 (79%), Positives = 278/314 (88%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++ LPPVEVKENDVCVKM+AAPINPSDINRIEGVYPVRP VPAVGGYEGVGEVY+VGS V
Sbjct: 62  LVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPVRPPVPAVGGYEGVGEVYAVGSNV 121

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
              +PGDWVIPSPPSSGTWQ+YVVK++SVWHK+ K+ PMEYAATI VNPLTALRMLEDF 
Sbjct: 122 NGFSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDKECPMEYAATITVNPLTALRMLEDFV 181

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            LNSGDS+VQNGATSIVGQC+IQ+AR RGI +IN+IRDRAGSDEA+E+LK LGADEVF+E
Sbjct: 182 NLNSGDSVVQNGATSIVGQCVIQLARLRGISTINLIRDRAGSDEAREQLKALGADEVFSE 241

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQL VKNVK LL NLPEPALGFNCVGGN+AS VLK+L +GGTMVTYGGMSKKPITVST++
Sbjct: 242 SQLNVKNVKSLLGNLPEPALGFNCVGGNAASLVLKYLREGGTMVTYGGMSKKPITVSTTS 301

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDL+L+GFWLQ WLS  K  ECR MIDYLL LAR+GKLKY+ ELVPF  F  AL KA
Sbjct: 302 FIFKDLALRGFWLQSWLSMGKVKECREMIDYLLGLARDGKLKYETELVPFEEFPVALDKA 361

Query: 301 LGLHGSQPKQVIKF 314
           LG  G QPKQVI F
Sbjct: 362 LGKLGRQPKQVITF 375

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17064956|gb|AAL32632.1| oxidoreductase of zinc-binding dehydrogenase family [Arabidopsis thaliana] gi|21387141|gb|AAM47974.1| oxidoreductase of zinc-binding dehydrogenase family [Arabidopsis thaliana]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 250/314 (79%), Positives = 278/314 (88%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++ LPPVEVKENDVCVKM+AAPINPSDINRIEGVYPVRP VPAVGGYEGVGEVY+VGS V
Sbjct: 62  LVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPVRPPVPAVGGYEGVGEVYAVGSNV 121

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
              +PGDWVIPSPPSSGTWQ+YVVK++SVWHK+ K+ PMEYAATI VNPLTALRMLEDF 
Sbjct: 122 NGFSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDKECPMEYAATITVNPLTALRMLEDFV 181

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            LNSGDS+VQNGATSIVGQC+IQ+AR RGI +IN+IRDRAGSDEA+E+LK LGADEVF+E
Sbjct: 182 NLNSGDSVVQNGATSIVGQCVIQLARLRGISTINLIRDRAGSDEAREQLKALGADEVFSE 241

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQL VKNVK LL NLPEPALGFNCVGGN+AS VLK+L +GGTMVTYGGMSK+PITVST++
Sbjct: 242 SQLNVKNVKSLLGNLPEPALGFNCVGGNAASLVLKYLREGGTMVTYGGMSKEPITVSTTS 301

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDL+L+GFWLQ WLS  K  ECR MIDYLL LAR+GKLKY+ ELVPF  F  AL KA
Sbjct: 302 FIFKDLALRGFWLQSWLSMGKVKECREMIDYLLGLARDGKLKYETELVPFEEFPVALDKA 361

Query: 301 LGLHGSQPKQVIKF 314
           LG  G QPKQVI F
Sbjct: 362 LGKLGRQPKQVITF 375

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819102|ref|XP_002877434.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297323272|gb|EFH53693.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/314 (79%), Positives = 277/314 (88%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++ LPPVEVKENDVCVKM+AAPINPSDINRIEGVYPVRP VPAVGGYEGVGEVY+VGS V
Sbjct: 63  LVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPVRPPVPAVGGYEGVGEVYAVGSKV 122

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
              +PGDWVIPSPPSSGTWQ+YVVK++SVWHK+ K  PMEYAATI VNPLTALRMLEDF 
Sbjct: 123 NGFSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDKACPMEYAATITVNPLTALRMLEDFV 182

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            LNSGDS+VQNGATSIVGQC+IQ+AR RGI +IN+IRDRAGSDEA+E+LK LGAD VF+E
Sbjct: 183 VLNSGDSVVQNGATSIVGQCVIQLARLRGISTINLIRDRAGSDEAREQLKALGADGVFSE 242

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
           SQL VKNVK LL NLPEPALGFNCVGGN+AS VLK+L +GGTMVTYGGMSKKPITVST++
Sbjct: 243 SQLNVKNVKSLLGNLPEPALGFNCVGGNAASLVLKYLREGGTMVTYGGMSKKPITVSTTS 302

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
           FIFKDL+L+GFWLQ WLS  K  ECR MIDYLL LA++GKLKY+ ELVPF+ F  AL KA
Sbjct: 303 FIFKDLALRGFWLQSWLSMGKVKECREMIDYLLGLAQDGKLKYETELVPFDEFPVALGKA 362

Query: 301 LGLHGSQPKQVIKF 314
           LG  G QPKQVI F
Sbjct: 363 LGKLGRQPKQVITF 376

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2102664	375	AT3G45770 [Arabidopsis thalian	1.0	0.837	0.748	7.8e-126
RGD|3208	373	Mecr "mitochondrial trans-2-en	0.945	0.796	0.453	3.7e-64
UNIPROTKB|Q9Z311	373	Mecr "Trans-2-enoyl-CoA reduct	0.945	0.796	0.453	3.7e-64
UNIPROTKB|Q9BV79	373	MECR "Trans-2-enoyl-CoA reduct	0.958	0.806	0.429	5.4e-63
MGI|MGI:1349441	373	Mecr "mitochondrial trans-2-en	0.980	0.825	0.435	6.9e-63
UNIPROTKB|E2R1T2	367	MECR "Uncharacterized protein"	0.990	0.847	0.417	7.1e-61
UNIPROTKB|Q28GQ2	350	mecr "Trans-2-enoyl-CoA reduct	0.914	0.82	0.439	5e-60
UNIPROTKB|Q7YS70	373	MECR "Trans-2-enoyl-CoA reduct	0.945	0.796	0.428	3.5e-59
ZFIN|ZDB-GENE-050417-399	377	mecr "mitochondrial trans-2-en	0.977	0.814	0.418	1.9e-58
FB|FBgn0033883	357	CG16935 [Drosophila melanogast	0.974	0.857	0.412	1.6e-56

TAIR|locus:2102664 AT3G45770 [Arabidopsis thaliana (taxid:3702)]

 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 235/314 (74%), Positives = 261/314 (83%)

Query:     1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXX 60
             ++ LPPVEVKENDVCVKM+AAPINPSDINRIEGVYPVRP VP                  
Sbjct:    62 LVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPVRPPVPAVGGYEGVGEVYAVGSNV 121

Query:    61 TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
                +PGDWVIPSPPSSGTWQ+YVVK++SVWHK+ K+ PMEYAATI VNPLTALRMLEDF 
Sbjct:   122 NGFSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDKECPMEYAATITVNPLTALRMLEDFV 181

Query:   121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
              LNSGDS+VQNGATSIVGQC+IQ+AR RGI +IN+IRDRAGSDEA+E+LK LGADEVF+E
Sbjct:   182 NLNSGDSVVQNGATSIVGQCVIQLARLRGISTINLIRDRAGSDEAREQLKALGADEVFSE 241

Query:   181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
             SQL VKNVK LL NLPEPALGFNCVGGN+AS VLK+L +GGTMVTYGGMSKKPITVST++
Sbjct:   242 SQLNVKNVKSLLGNLPEPALGFNCVGGNAASLVLKYLREGGTMVTYGGMSKKPITVSTTS 301

Query:   241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKA 300
             FIFKDL+L+GFWLQ WLS  K  ECR MIDYLL LAR+GKLKY+ ELVPF  F  AL KA
Sbjct:   302 FIFKDLALRGFWLQSWLSMGKVKECREMIDYLLGLARDGKLKYETELVPFEEFPVALDKA 361

Query:   301 LGLHGSQPKQVIKF 314
             LG  G QPKQVI F
Sbjct:   362 LGKLGRQPKQVITF 375

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

RGD|3208 Mecr "mitochondrial trans-2-enoyl-CoA reductase" [Rattus norvegicus (taxid:10116)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 137/302 (45%), Positives = 186/302 (61%)

Query:     2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXT 61
             +EL  VE   +DV VKMLAAPINPSDIN I+G Y + PK+P                  +
Sbjct:    63 LELTAVE--GSDVHVKMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVIAVGSSVS 120

Query:    62 RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
              L PGDWVIP+    GTW++  V  +     V KD P++ AAT+ VNP TA RML DF  
Sbjct:   121 GLKPGDWVIPANAGLGTWRTEAVFSEEALIGVPKDIPLQSAATLGVNPCTAYRMLVDFEQ 180

Query:   122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES 181
             L  GDS++QN + S VGQ +IQIA   G+ +IN+IRDR    +  ++LK LGAD V TE 
Sbjct:   181 LQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLTDRLKDLGADYVLTEE 240

Query:   182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF 241
             +L +   K +  +LP P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+T S S  
Sbjct:   241 ELRMPETKNIFKDLPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVTASVSML 300

Query:   242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC-LAREGKLKYDM-ELVPFNNFQTALSK 299
             IFKDL L+GFWL +W  +    E + +I  +LC L R+G+L       +P  ++Q AL  
Sbjct:   301 IFKDLKLRGFWLSQWKKNHSPDEFKELI-LILCNLIRQGQLTAPAWSGIPLQDYQQALEA 359

Query:   300 AL 301
             ++
Sbjct:   360 SM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISO;ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA;ISO;ISS

UNIPROTKB|Q9Z311 Mecr "Trans-2-enoyl-CoA reductase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 137/302 (45%), Positives = 186/302 (61%)

Query:     2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXT 61
             +EL  VE   +DV VKMLAAPINPSDIN I+G Y + PK+P                  +
Sbjct:    63 LELTAVE--GSDVHVKMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVIAVGSSVS 120

Query:    62 RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
              L PGDWVIP+    GTW++  V  +     V KD P++ AAT+ VNP TA RML DF  
Sbjct:   121 GLKPGDWVIPANAGLGTWRTEAVFSEEALIGVPKDIPLQSAATLGVNPCTAYRMLVDFEQ 180

Query:   122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES 181
             L  GDS++QN + S VGQ +IQIA   G+ +IN+IRDR    +  ++LK LGAD V TE 
Sbjct:   181 LQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLTDRLKDLGADYVLTEE 240

Query:   182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF 241
             +L +   K +  +LP P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+T S S  
Sbjct:   241 ELRMPETKNIFKDLPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVTASVSML 300

Query:   242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC-LAREGKLKYDM-ELVPFNNFQTALSK 299
             IFKDL L+GFWL +W  +    E + +I  +LC L R+G+L       +P  ++Q AL  
Sbjct:   301 IFKDLKLRGFWLSQWKKNHSPDEFKELI-LILCNLIRQGQLTAPAWSGIPLQDYQQALEA 359

Query:   300 AL 301
             ++
Sbjct:   360 SM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9BV79 MECR "Trans-2-enoyl-CoA reductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 131/305 (42%), Positives = 185/305 (60%)

Query:     1 MIELPPVE---VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXX 57
             ++EL  +E   V+ +DV VKMLAAPINPSDIN I+G Y   P++P               
Sbjct:    57 VVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGFLPELPAVGGNEGVAQVVAVG 116

Query:    58 XXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
                T L PGDWVIP+    GTW++  V  +    +V  D P++ AAT+ VNP TA RML 
Sbjct:   117 SNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLM 176

Query:   118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
             DF  L  GDS++QN + S VGQ +IQIA   G+ +IN++RDR    +  ++LK LGA+ V
Sbjct:   177 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHV 236

Query:   178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
              TE +L    +K    ++P+P L  NCVGG S++++L+ L++GGTMVTYGGM+K+P+  S
Sbjct:   237 ITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVAS 296

Query:   238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTA 296
              S  IFKDL L+GFWL +W       + + +I  L  L R G+L       VP  ++Q+A
Sbjct:   297 VSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSA 356

Query:   297 LSKAL 301
             L  ++
Sbjct:   357 LEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1349441 Mecr "mitochondrial trans-2-enoyl-CoA reductase" [Mus musculus (taxid:10090)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 136/312 (43%), Positives = 187/312 (59%)

Query:     2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXT 61
             +EL  VE   +DV V+MLAAPINPSDIN I+G Y + PK+P                  +
Sbjct:    63 LELTAVE--GSDVHVRMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVIAVGSSVS 120

Query:    62 RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
              L PGDWVIP+    GTW++  V  +     + KD P++ AAT+ VNP TA RML DF  
Sbjct:   121 ALKPGDWVIPANAGLGTWRTEAVFSEEALIGIPKDIPLQSAATLGVNPCTAYRMLVDFEQ 180

Query:   122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES 181
             L  GDS++QN + S VGQ +IQIA    + +IN++RDR    +  ++LK LGAD V TE 
Sbjct:   181 LQPGDSVIQNASNSGVGQAVIQIASALRLKTINVVRDRPDIKKLTDRLKDLGADYVLTEE 240

Query:   182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF 241
             +L +   K +  +LP P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+T S S  
Sbjct:   241 ELRMPETKTIFKDLPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVTASVSLL 300

Query:   242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY-DMELVPFNNFQTALSKA 300
             IFKDL L+GFWL +W  +    E + +I  L  L R+G+L       VP   +Q AL  +
Sbjct:   301 IFKDLKLRGFWLSQWKKNHSPDEFKELILTLCNLIRQGRLTAPSCSEVPLQGYQQALEAS 360

Query:   301 LGLHGSQPKQVI 312
             +    S  KQ++
Sbjct:   361 MKPFVSS-KQIL 371

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005102 "receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISO

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E2R1T2 MECR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 132/316 (41%), Positives = 185/316 (58%)

Query:     1 MIELPPVE---VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXX 57
             ++EL  +E   V  +DV VKMLAAPINPSDIN I+G Y + PK+P               
Sbjct:    50 VVELKNLELAAVGGSDVHVKMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVVAVG 109

Query:    58 XXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
                T + PGDWVIP+    GTW++  V  +     V  D P++ AAT+ VNP TA RML 
Sbjct:   110 GSVTGVKPGDWVIPANAGLGTWRTEAVFSEEALIGVPSDIPLQSAATLGVNPCTAYRMLM 169

Query:   118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
             DF  L  GD ++QN + S VGQ +IQIA   G+ +IN++RDR    E  ++LK LGA+ V
Sbjct:   170 DFEQLQPGDWVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDLQELTDRLKSLGAEHV 229

Query:   178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
              TE +L    +K    ++P+P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+  S
Sbjct:   230 LTEEELRKHEMKNFFKDMPQPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVIAS 289

Query:   238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTA 296
              S  IFKDL L+GFWL +W       + + +I  L  L   G+L       VP  +++ A
Sbjct:   290 VSQLIFKDLKLRGFWLSQWKKDHSPAQFKELILTLCGLIGRGQLTAPACSEVPLQDYERA 349

Query:   297 LSKALGLHGSQPKQVI 312
             L  ++    S  KQ++
Sbjct:   350 LEASMQPFVSS-KQIL 364

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q28GQ2 mecr "Trans-2-enoyl-CoA reductase, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 128/291 (43%), Positives = 170/291 (58%)

Query:    11 ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTRLAPGDWVI 70
             +N+V VKMLAAPINPSDIN ++G Y + P++P                  + + PGDWV+
Sbjct:    44 DNEVRVKMLAAPINPSDINMVQGTYALLPQLPAVGGNEGVGVVVEIGRHVSSMRPGDWVV 103

Query:    71 PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQ 130
             P     GTW +  V  +    +V  D P+  AAT+ VNP TA R+L DF TL  GD+I+Q
Sbjct:   104 PVDAGLGTWCTEAVFSEDSLVRVPSDIPVAGAATVSVNPCTAYRLLSDFETLRPGDTIIQ 163

Query:   131 NGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKG 190
             N + S VGQ +IQIA   GI +IN++RDR       ++L+ LGAD V TE QL    +K 
Sbjct:   164 NASNSGVGQAVIQIATSLGITTINVVRDREDLSSLIQRLRDLGADHVITEEQLRKPEMKD 223

Query:   191 LLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
             L  N P P L  NCVGG S +++L+ L  GGTMVTYGGMSK+P+TV  SA IFK++ L G
Sbjct:   224 LFKNCPRPRLALNCVGGKSTTEMLRHLDYGGTMVTYGGMSKQPVTVPVSALIFKNVKLCG 283

Query:   251 FWLQKWLSSEKATECRNMIDYL--LC-LAREGKLKYDMELV-PFNNFQTAL 297
             FW+ +W      T+   ++  +  LC L R GKL        P  +F  AL
Sbjct:   284 FWVTQWKKERAQTDREEIVKMIRDLCDLIRRGKLVPPPSTQRPLEDFSRAL 334

GO:0039020 "pronephric nephron tubule development" evidence=IMP

UNIPROTKB|Q7YS70 MECR "Trans-2-enoyl-CoA reductase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 129/301 (42%), Positives = 177/301 (58%)

Query:     1 MIELPPVE---VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXX 57
             ++EL  +E   V  + V VKMLAAPINPSDIN I+G Y + P++P               
Sbjct:    57 VVELKNLELAAVGGSHVHVKMLAAPINPSDINMIQGNYGLLPQLPAVGGNEGVGQVVAVG 116

Query:    58 XXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
                T + PGDWVIP+ P  GTW++  V  +     V  D P++ AAT+ VNP TA RML 
Sbjct:   117 SGVTGVKPGDWVIPANPGLGTWRTEAVFGEEELITVPSDIPLQSAATLGVNPCTAYRMLV 176

Query:   118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
             DF  L   DSI+QN + S VGQ +IQIA  RG+ +IN++RD     +  + LK LGA+ V
Sbjct:   177 DFERLRPRDSIIQNASNSGVGQAVIQIAAARGLRTINVLRDTPDLQKLTDTLKNLGANHV 236

Query:   178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
              TE +L    +K    ++P+P L  NCVGG S++++L+ L+ GGTMVTYGGM+K+P+  S
Sbjct:   237 VTEEELRKPEMKSFFKDVPQPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPVIAS 296

Query:   238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTA 296
              S  IFKDL L+GFWL +W       + + +I  L  L R G+L       VP  ++  A
Sbjct:   297 VSQLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSEVPLQDYLCA 356

Query:   297 L 297
             L
Sbjct:   357 L 357

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-050417-399 mecr "mitochondrial trans-2-enoyl-CoA reductase" [Danio rerio (taxid:7955)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 131/313 (41%), Positives = 182/313 (58%)

Query:     2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXT 61
             ++LP  +V    V VKMLAAPINPSD+N ++G Y + P++P                   
Sbjct:    65 LDLP--QVGAECVLVKMLAAPINPSDLNMLQGTYAILPELPAVGGNEGVAQVMEVGDKVK 122

Query:    62 RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
              L  GDWVIP     GTW++  V        + KD P+  AAT+ VNP TA RML DF  
Sbjct:   123 TLKVGDWVIPKDAGIGTWRTAAVLKADDLVTLPKDIPVLSAATLGVNPCTAYRMLTDFEE 182

Query:   122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES 181
             L +GD+++QN A S VGQ +IQIA  +GIH+IN+IRDR    +  ++L  +GA  V TE 
Sbjct:   183 LKAGDTVIQNAANSGVGQAVIQIAAAKGIHTINVIRDRPDLRQLSDRLTAMGATHVITEE 242

Query:   182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF 241
              L    +K L  + P P L  N VGG SA+++L+ L  GG++VTYGGM+K+P+TV  SA 
Sbjct:   243 TLRRPEMKELFKSCPRPKLALNGVGGKSATELLRHLQSGGSLVTYGGMAKQPVTVPVSAL 302

Query:   242 IFKDLSLKGFWLQKWLSSEKATE--CRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALS 298
             IFKD+ ++GFW+ +W    +  +   R+M+D L  L R GKL   +   V   +F+ AL 
Sbjct:   303 IFKDVRVRGFWVTQWKRDNRHDDEALRHMLDELCILIRAGKLSAPICTQVQLQDFRKALE 362

Query:   299 KALGLHGSQPKQV 311
              A+  + S  KQV
Sbjct:   363 NAMKPYVST-KQV 374

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA

GO:0039020 "pronephric nephron tubule development" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

FB|FBgn0033883 CG16935 [Drosophila melanogaster (taxid:7227)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 129/313 (41%), Positives = 181/313 (57%)

Query:     3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTR 62
             +LP  + K+N V VK+LAAPINP+DIN I+G YPV+PK P                    
Sbjct:    44 KLP--DPKDNQVLVKILAAPINPADINTIQGKYPVKPKFPAVGGNECVAEVICVGDKVKG 101

Query:    63 LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
                G  VIP     GTW ++ V  +     VSK   +  AAT  VNP TA RML+DF  L
Sbjct:   102 FEAGQHVIPLASGLGTWTTHAVYKEDQLLIVSKKVGLAEAATSTVNPTTAYRMLKDFVQL 161

Query:   123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ 182
               GD+++QNGA S VGQ + Q+ R  GI+S+ I+RDR    E K+ L+ LGA EV TE++
Sbjct:   162 CPGDTVIQNGANSAVGQAVHQLCRAWGINSVGIVRDRPEIAELKQMLQCLGATEVLTEAE 221

Query:   183 LEVKNV-KGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF 241
             +   ++ K     L +P L FNCVGG SA++V + L  GG +VTYGGMS++P+TV+T   
Sbjct:   222 IRTSDIFKS--GKLKKPRLAFNCVGGKSATEVSRHLDNGGVLVTYGGMSREPVTVATGPL 279

Query:   242 IFKDLSLKGFWLQKWLSSEKATECRN-MIDYLLCLAREGK-LKYDMELVPFNNFQTALSK 299
             IFKD++ +GFW+ +W     ++  R+ M   +  L  +GK +  + E+VP   F+ A + 
Sbjct:   280 IFKDIAFRGFWMTRWSKENYSSPERSKMFKEIFELMEQGKFVAPNHEMVPLAKFKDAAAA 339

Query:   300 ALGLHGSQPKQVI 312
             AL   G   K+ I
Sbjct:   340 ALSFKGFTGKKYI 352

GO:0008270 "zinc ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISS

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V6U9	MECR_DROME	1, ., 3, ., 1, ., 3, 8	0.4491	0.9617	0.8459	yes	no
Q9BV79	MECR_HUMAN	1, ., 3, ., 1, ., 3, 8	0.4688	0.9585	0.8069	yes	no
Q54YT4	MECR_DICDI	1, ., 3, ., 1, ., 3, 8	0.4183	0.9331	0.8371	yes	no
Q10488	ETR1_SCHPO	1, ., 3, ., 1, ., 3, 8	0.3860	0.9490	0.8010	yes	no
Q8LCU7	MECR_ARATH	1, ., 3, ., 1, ., 3, 8	0.7993	1.0	0.8373	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.921
3rd Layer	1.3.1.38	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-148
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	5e-90
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	5e-57
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	5e-54
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	1e-46
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	1e-42
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-34
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	4e-32
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	6e-26
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-25
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-25
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	3e-24
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	6e-24
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-23
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-22
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	9e-20
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	9e-20
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	3e-19
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	7e-19
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	2e-18
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	2e-18
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-17
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	2e-17
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	4e-17
smart00829	287	smart00829, PKS_ER, Enoylreductase	3e-16
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	4e-16
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	8e-16
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	1e-15
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-15
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	7e-15
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	9e-15
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-14
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	1e-14
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-14
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	5e-14
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	8e-14
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	9e-14
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-13
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-13
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	4e-13
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	7e-13
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	9e-13
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	9e-13
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	2e-12
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	2e-12
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	1e-11
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-11
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	6e-11
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-10
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-10
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-10
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	2e-10
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-10
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	2e-10
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	4e-10
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	5e-10
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	5e-10
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	6e-10
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	1e-09
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-09
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	4e-09
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-08
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-08
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	2e-08
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	2e-08
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	2e-08
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-08
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	3e-08
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	4e-08
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	4e-08
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	5e-08
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	6e-08
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	9e-08
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-07
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-07
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	3e-07
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	3e-07
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	4e-07
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	2e-06
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	3e-06
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	4e-06
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-06
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	6e-06
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	7e-06
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	8e-06
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	1e-05
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-05
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	3e-05
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	3e-05
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	3e-05
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	4e-05
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	7e-05
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	2e-04
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	5e-04
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	6e-04
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	0.001
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	0.002
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	0.002
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	0.004

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score =  418 bits (1078), Expect = e-148
 Identities = 161/323 (49%), Positives = 200/323 (61%), Gaps = 12/323 (3%)

Query: 3   ELPPVEVKE-NDVCVKMLAAPINPSDINRIEGVYPVRPK----VPAVGGYEGVGEVYSVG 57
                     N+V VKMLAAPINP+DIN+I+GVYP++P      PAVGG EGVGEV  VG
Sbjct: 20  SYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG 79

Query: 58  SAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
           S V  L PGDWVIP  P  GTW+++ V       KV  D   E AAT+ VNP TA R+LE
Sbjct: 80  SGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLE 139

Query: 118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           DF  L  GD ++QNGA S VGQ +IQ+A+  GI +IN++RDR   +E KE+LK LGAD V
Sbjct: 140 DFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHV 199

Query: 178 FTESQLEVKNVKGLLANLP--EPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 235
            TE +L       LL + P   P L  NCVGG SA+++ + LS GGTMVTYGGMS +P+T
Sbjct: 200 LTEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTMVTYGGMSGQPVT 259

Query: 236 VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM----ELVPFN 291
           V TS  IFKD++L+GFWL +WL      E  +M++ L  L REGKLK          P  
Sbjct: 260 VPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLE 319

Query: 292 NFQTALSKALGLHGSQPKQVIKF 314
            F+ AL+ AL   G   KQV+  
Sbjct: 320 EFKDALANALKGGGG-GKQVLVM 341

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  271 bits (694), Expect = 5e-90
 Identities = 119/302 (39%), Positives = 165/302 (54%), Gaps = 8/302 (2%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++ LP       +V V+MLAAPINPSD+  I G Y  RP +PAV G EGVG V  VGS V
Sbjct: 16  LVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGV 75

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
           + L  G  V+P     GTWQ YVV        V      E AA + +NPLTA  ML ++ 
Sbjct: 76  SGLLVGQRVLP-LGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYL 134

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            L  GD ++QN A S VG+ +IQ+A+  G  +IN++R     DE  E+LK LGADEV   
Sbjct: 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVR----RDEQVEELKALGADEVIDS 190

Query: 181 SQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS 239
           S  +  + VK          L  + VGG SA+++ + L  GGT+V YG +S +P+    S
Sbjct: 191 SPEDLAQRVKEAT-GGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRS 249

Query: 240 AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALS 298
            FIFKD++++GFWL++WL S      +     ++ L   G L        P  +F+ A++
Sbjct: 250 VFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVA 309

Query: 299 KA 300
            A
Sbjct: 310 AA 311

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score =  186 bits (474), Expect = 5e-57
 Identities = 97/289 (33%), Positives = 143/289 (49%), Gaps = 10/289 (3%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
            E+P       +V V+   +PI+  D+  I G Y  +P++PA+GG E VG V +VG  V 
Sbjct: 19  GEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVK 78

Query: 62  RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
            L  G  V  +P   GTW  Y V        +      E AA +I  PL+AL ML DF  
Sbjct: 79  GLQVGQRVAVAP-VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSAL-MLLDFLG 136

Query: 122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF-TE 180
           +  G  ++QN A   VG+ +  +A  RGI+ IN++R     D    +L+ LG   V  TE
Sbjct: 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR----RDAGVAELRALGIGPVVSTE 192

Query: 181 SQLEVKNVKGLLANLPEPAL-GFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS 239
                  V+        P     + VGG  A ++L  L +GGT+V++G MS +P+ +S+ 
Sbjct: 193 QPGWQDKVREAAGG--APISVALDSVGGKLAGELLSLLGEGGTLVSFGSMSGEPMQISSG 250

Query: 240 AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELV 288
             IFK  +++GFW  +W         + MI  LL LA +G+L   +E V
Sbjct: 251 DLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAV 299

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  179 bits (455), Expect = 5e-54
 Identities = 90/317 (28%), Positives = 139/317 (43%), Gaps = 14/317 (4%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  E    +V V++ AA +NP D+   +G+ P    +P + G E  G V +VGS VT 
Sbjct: 19  EVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTG 78

Query: 63  LAPGDWVI--PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
              GD V         G +  YVV        +      E AA + +  LTA   L D  
Sbjct: 79  FKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRA 138

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE 180
            L  G++++ +GA   VG   IQ+A+  G   + +      S E  E LK LGAD V   
Sbjct: 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV----VSSSEKLELLKELGADHVINY 194

Query: 181 S-QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP-ITVST 238
             +  V+ V+ L        +  + VGG++ +  L  L+ GG +V+ G +S  P + ++ 
Sbjct: 195 REEDFVEQVRELTGGKG-VDVVLDTVGGDTFAASLAALAPGGRLVSIGALSGGPPVPLNL 253

Query: 239 SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELV-PFNNFQTAL 297
              + K L+L+G  L    S +        +  L  L   GKLK  ++ V P      A 
Sbjct: 254 LPLLGKRLTLRGVTL---GSRDPE-ALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAA 309

Query: 298 SKALGLHGSQPKQVIKF 314
           +  L    +  K V+K 
Sbjct: 310 AHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score =  159 bits (405), Expect = 1e-46
 Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 14/270 (5%)

Query: 2   IELPPVEV---KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVG- 57
           + LP  EV      +V +K+ AAPINPSD+  ++G Y     +P   G+EG G V + G 
Sbjct: 18  LSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGG 77

Query: 58  SAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
             + +   G  V     S GT+  Y V D      +      E  A+  VNPLTAL MLE
Sbjct: 78  GPLAQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLE 137

Query: 118 DFTTLNSGDS-IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE 176
             T    G   +V   A S +G+ ++++ +  GI  INI+R      E  + LK +GA+ 
Sbjct: 138 --TAREEGAKAVVHTAAASALGRMLVRLCKADGIKVINIVR----RKEQVDLLKKIGAEY 191

Query: 177 VFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 235
           V   S  + ++++K L+A L    + F+ VGG    ++L  +  G T+  YG +S K   
Sbjct: 192 VLNSSDPDFLEDLKELIAKL-NATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKLDE 250

Query: 236 -VSTSAFIFKDLSLKGFWLQKWLSSEKATE 264
            +     IFK+ S++GFWL  WL       
Sbjct: 251 PIDPVDLIFKNKSIEGFWLTTWLQKLGPEV 280

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  147 bits (373), Expect = 1e-42
 Identities = 72/263 (27%), Positives = 107/263 (40%), Gaps = 29/263 (11%)

Query: 13  DVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPS 72
           +V V++ AA +  +D++   G YP  PK+P + G+EG G V  VG  VT +  GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 73  PPSS----------------------GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPL 110
           P                         G +  YVV        +     +E AA +     
Sbjct: 61  PNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLA 120

Query: 111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
           TA   L     L  GD+++  GA   VG    Q+A+  G   I        SDE  E  K
Sbjct: 121 TAYHALRRAGVLKPGDTVLVLGA-GGVGLLAAQLAKAAGARVIVT----DRSDEKLELAK 175

Query: 171 GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGM 229
            LGAD V    + +++    L        +  + VGG    ++ L+ L  GG +V  GG 
Sbjct: 176 ELGADHVIDYKEEDLEEELRLTGG-GGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGT 234

Query: 230 SKKPITVSTSAFIFKDLSLKGFW 252
           S  P        +FK+L++ G  
Sbjct: 235 SGGPPLDDLRRLLFKELTIIGST 257

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  126 bits (320), Expect = 2e-34
 Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 15/230 (6%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV--PAVGGYEGVGEVYSVGS 58
           + ++P  E    +V VK+ AA +NP D+   EG+      +  P + G++  G V +VG 
Sbjct: 17  LADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGP 76

Query: 59  AVTRLAPGDWVI--PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRML 116
            VT    GD V         G +  YVV           +   E AA + +  LTA + L
Sbjct: 77  GVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQAL 136

Query: 117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE 176
            +   L +G +++ +GA   VG   +Q+A+ RG   I        S    + L+ LGADE
Sbjct: 137 FELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIAT-----ASAANADFLRSLGADE 191

Query: 177 VFTESQLEVKNVKGLLANLPEPA-LGFNCVGGNSASKVLKFLSQGGTMVT 225
           V     ++        A  P       + VGG + ++ L  +  GG +V+
Sbjct: 192 V-----IDYTKGDFERAAAPGGVDAVLDTVGGETLARSLALVKPGGRLVS 236

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  121 bits (306), Expect = 4e-32
 Identities = 89/291 (30%), Positives = 131/291 (45%), Gaps = 22/291 (7%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
            ELP       +V +++ A  +N +D     G Y   P +PA  GYE  G V +VG+ VT
Sbjct: 18  EELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVT 77

Query: 62  RLAPGDWVIPSP-PSSGTWQSY----VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRML 116
             A GD V   P    G + +Y    +V   +V       S +E AA + +  LTA   L
Sbjct: 78  GFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVE-AAALWMQYLTAYGAL 136

Query: 117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE 176
            +   L  GDS++   A+S VG   IQIA   G   I   R    + E ++ L  LGA  
Sbjct: 137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTR----TSEKRDALLALGAAH 192

Query: 177 V-FTESQLEVKNVK----GLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK 231
           V  T+ +  V  V     G   ++      F+ VGG   +K+   L+ GGT+V YG +S 
Sbjct: 193 VIVTDEEDLVAEVLRITGGKGVDVV-----FDPVGGPQFAKLADALAPGGTLVVYGALSG 247

Query: 232 KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
           +P      A + K L+ +G+ L +     +A   R  I ++L     G LK
Sbjct: 248 EPTPFPLKAALKKSLTFRGYSLDEITLDPEAR--RRAIAFILDGLASGALK 296

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  104 bits (262), Expect = 6e-26
 Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 10/282 (3%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+PP      +V +++ AA +N  D+  I+G Y V+P +P V G E  G V +VG  VT 
Sbjct: 19  EVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTG 78

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V+      G +   VV   +    +      E AA + V   TA   L     L
Sbjct: 79  FKVGDRVVALTG-QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARL 137

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ 182
             G++++  GA   VG   +Q+A+  G   I      A S+E     + LGAD V     
Sbjct: 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAA----ASSEEKLALARALGADHVIDYRD 193

Query: 183 LEVK-NVKGLLANLPEPA-LGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
            +++  VK L         + ++ VGG+     L+ L+ GG ++  G  S +   +  + 
Sbjct: 194 PDLRERVKALTG--GRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGEIPQIPANL 251

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
            + K++S+ G +   +   E      N+ + L  L  EGK++
Sbjct: 252 LLLKNISVVGVYWGAYARREPELLRANLAE-LFDLLAEGKIR 292

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  103 bits (259), Expect = 1e-25
 Identities = 84/302 (27%), Positives = 125/302 (41%), Gaps = 30/302 (9%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGV-YPVRPKV-PAVGGYEGVGEVYSVGSA 59
           +E+P    K  +V VK+ AA +NP D     G    +  +  P + G +  GEV +VGS 
Sbjct: 17  VEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSG 76

Query: 60  VTRLAPGDWVI--PSPPSSGTWQSYVVKD-QSVWHKVSKDSPMEYAATIIVNPLTALRML 116
           VTR   GD V     P   G    YVV     +  K    S  E AA + V  LTAL+ L
Sbjct: 77  VTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSF-EEAAALPVAGLTALQAL 135

Query: 117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE 176
            D   +  G  ++ NGA+  VG   +QIA+  G H   +      S    E ++ LGADE
Sbjct: 136 RDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGV-----CSTRNAELVRSLGADE 190

Query: 177 VFTESQLEVKNVKGLLANLPEPALGFNCVGGNSAS--KVLKFLSQGGTMVTYGGMSKKPI 234
           V   +  +      L A   +  + F+ VG +  S  +    L  GG  V+ GG     +
Sbjct: 191 VIDYTTEDFVA---LTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLL 247

Query: 235 TVSTSAFIF-KDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK------YDMEL 287
            V     +       +  +     ++E   +   +++       EGKLK      Y +E 
Sbjct: 248 LVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVE-------EGKLKPVIDSVYPLED 300

Query: 288 VP 289
            P
Sbjct: 301 AP 302

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  103 bits (260), Expect = 2e-25
 Identities = 70/254 (27%), Positives = 107/254 (42%), Gaps = 30/254 (11%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           +LP  E   ++V V++ AA +N  D+    G+  ++  +P + G +G G V +VG  VT 
Sbjct: 19  DLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTN 78

Query: 63  LAPGDWVIPSPPSS--------------------------GTWQSYVVKDQSVWHKVSKD 96
           + PG  V+  P  S                          G +  YV         +  +
Sbjct: 79  VKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDN 138

Query: 97  SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII 156
              E AA   +  LTA  ML     L  G++++ +GA S VG   IQIA+  G   I   
Sbjct: 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIAT- 197

Query: 157 RDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKF 216
              AGS++  E+ K LGAD V    + +       L       +    VG  +  K LK 
Sbjct: 198 ---AGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAATWEKSLKS 254

Query: 217 LSQGGTMVTYGGMS 230
           L++GG +VT G  +
Sbjct: 255 LARGGRLVTCGATT 268

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  100 bits (251), Expect = 3e-24
 Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 23/236 (9%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++P  E    +V V+  A  +N  D     G+YP+    P V G EG G V +VG  VT 
Sbjct: 18  DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPL--PFVLGVEGAGVVEAVGPGVTG 75

Query: 63  LAPGDWVI-PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
              GD V    PP  G +  Y V   S   K+      E AA +++  LTA  +L +   
Sbjct: 76  FKVGDRVAYAGPP--GAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYP 133

Query: 122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV---- 177
           +  GD+++ + A   VG  + Q A+  G   I        S+E  E  +  GAD V    
Sbjct: 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVI----GTVSSEEKAELARAAGADHVINYR 189

Query: 178 ---FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS 230
              F E   E+   +G+          ++ VG ++    L  L   GT+V++G  S
Sbjct: 190 DEDFVERVREITGGRGVDV-------VYDGVGKDTFEGSLDSLRPRGTLVSFGNAS 238

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 99.2 bits (248), Expect = 6e-24
 Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 25/261 (9%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           +LP       +V V++ A+ +NP D     G YP  P +P V G +G G V +VG  V  
Sbjct: 19  DLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDG 78

Query: 63  LAPGD----WVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED 118
           L  GD      +      GT   YVV        +      E  A + +  LTA R L  
Sbjct: 79  LKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFH 138

Query: 119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF 178
                +G++++ +G +  VG   +Q+AR  G   I      A S E  E ++  GAD VF
Sbjct: 139 RAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIAT----ASSAEGAELVRQAGADAVF 194

Query: 179 ---TESQLE-VKNVKGLLANLPEPALGFNCV----GGNSASKVLKFLSQGGTMVTYGGMS 230
               E   + +               G + +       + +K L  L+ GG +V YG   
Sbjct: 195 NYRAEDLADRILAATA--------GQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGG 246

Query: 231 KKPITVSTSAFIFKDLSLKGF 251
            +  T+  +  + K+ S++G 
Sbjct: 247 LRG-TIPINPLMAKEASIRGV 266

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 72/292 (24%), Positives = 119/292 (40%), Gaps = 40/292 (13%)

Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP 71
            +V VK+ A+ ++ +D+    G+YP +P +P   GY+ VG V ++GS VT    GD V  
Sbjct: 28  GEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAA 87

Query: 72  SPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN 131
                G    Y+  D      V +      A  +++N +TA +ML     + +G  ++ +
Sbjct: 88  LTR-VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIH 146

Query: 132 GATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA------DEVFTESQLEV 185
           GA+  VGQ ++++A   G            S+     L+ LGA       + +  + L  
Sbjct: 147 GASGGVGQALLELALLAGAEVYG-----TASERNHAALRELGATPIDYRTKDWLPAMLTP 201

Query: 186 KNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYG-------GMSKKPITVST 238
             V  +          F+ VGG S  +    L+ GGT+V YG       G        S 
Sbjct: 202 GGVDVV----------FDGVGGESYEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSL 251

Query: 239 SAFIFKDLSLKGFWLQK--------WLSSEKATECRNMIDYLLCLAREGKLK 282
            A + K   LK     +           +E     R  +  LL L  +GK++
Sbjct: 252 LARLAK---LKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIR 300

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 28/238 (11%)

Query: 8   EVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGD 67
           +   ++V VK+ A  +NP D    +  Y   P  PA+ G +  G V  VGS VTR   GD
Sbjct: 23  KPGPDEVLVKVKAVALNPVDWKHQD--YGFIPSYPAILGCDFAGTVVEVGSGVTRFKVGD 80

Query: 68  WVI-------PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA-------L 113
            V        P+ P +G +Q YVV D  +  K+  +   E AAT+ V  +TA       L
Sbjct: 81  RVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKL 140

Query: 114 RMLEDFTTLNS---GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
            +       +    G  ++  G +S VG   IQ+A+  G   I        S +  + +K
Sbjct: 141 GLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITT-----ASPKNFDLVK 195

Query: 171 GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG-GNSASKVLKFLSQ--GGTMVT 225
            LGAD VF     +V           +     +C+    SA    + L +  GG +V+
Sbjct: 196 SLGADAVFDYHDPDVVEDIRAATG-GKLRYALDCISTPESAQLCAEALGRSGGGKLVS 252

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 87.7 bits (218), Expect = 9e-20
 Identities = 84/325 (25%), Positives = 126/325 (38%), Gaps = 29/325 (8%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
            E+        +V VK+ AA +NP D   I    P     P V G +G G V +VG+ VT
Sbjct: 18  EEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVT 76

Query: 62  RLAPGDWVI--PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF 119
               GD V    S    G++  Y V D      +      E AA +    LTA + L   
Sbjct: 77  GWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKK 136

Query: 120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEVF 178
             + +G +I+  G    VG   +Q+A+  G+  I          +   E +K LGAD V 
Sbjct: 137 LRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVI------TTCSKRNFEYVKSLGADHVI 190

Query: 179 -------TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVT-YGGMS 230
                   E   E+   +G+ A         + VGG +A+ +   L+  G +V   G   
Sbjct: 191 DYNDEDVCERIKEITGGRGVDAV-------LDTVGGETAAALAPTLAFNGHLVCIQGRPD 243

Query: 231 KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL-KYDMELVP 289
             P    T A    +++L               + R   + LL L   GKL    +E++P
Sbjct: 244 ASPDPPFTRALSVHEVALGAAHDHG--DPAAWQDLRYAGEELLELLAAGKLEPLVIEVLP 301

Query: 290 FNNFQTALSKALGLHGSQPKQVIKF 314
           F     AL  AL    ++ K V+  
Sbjct: 302 FEQLPEALR-ALKDRHTRGKIVVTI 325

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 87.6 bits (218), Expect = 9e-20
 Identities = 83/329 (25%), Positives = 132/329 (40%), Gaps = 61/329 (18%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  E    +V +K+ A  +  +D++  +G +PV PK+P + G+E VG V  VG  VT 
Sbjct: 20  EVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV-PKLPLIPGHEIVGTVVEVGEGVTG 78

Query: 63  LAPGDWV-IPSPPSS--------------------------GTWQSYV-VKDQSVWHKVS 94
           L  GD V +     S                          G +  YV V  + V   + 
Sbjct: 79  LKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVK-IP 137

Query: 95  KDSPMEYAATIIVNPLT---ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH 151
           +   +  AA ++   +T   AL+       +  G  +   GA   +G   +Q A+  G  
Sbjct: 138 EGLDLAEAAPLLCAGITTYRALKKAN----VKPGKWVAVVGAGG-LGHMAVQYAKAMGAE 192

Query: 152 SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSAS 211
            I I R    S+E  E  K LGAD V   S  +       +A+     +  + VG  +  
Sbjct: 193 VIAITR----SEEKLELAKKLGADHVINSSDSDALEAVKEIADA---II--DTVGPATLE 243

Query: 212 KVLKFLSQGGTMVTYGGMSKKPI-TVSTSAFIFKDLSLKGFW-LQKWLSSEKATECRNMI 269
             LK L +GGT+V  G     PI  +     I K++S+ G     +        +    +
Sbjct: 244 PSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRA-------DLEEAL 296

Query: 270 DYLLCLAREGKLKYD-MELVPFNNFQTAL 297
           D     A EGK+K + +E +P +    A 
Sbjct: 297 D----FAAEGKIKPEILETIPLDEINEAY 321

Length = 339

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 84/337 (24%), Positives = 139/337 (41%), Gaps = 67/337 (19%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++P  E    +V VK+ A+ +  +D++   G +PV+PK+P +GG+EG G V +VG  V+ 
Sbjct: 18  DVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSG 77

Query: 63  LAPGD-----WVI-----------------PSPPSS-----GTWQSYVVKDQSVWHKVSK 95
           L  GD     W+                  P+  +S     GT+  Y + D      +  
Sbjct: 78  LKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPD 137

Query: 96  DSPMEYAATIIVNPLT---ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHS 152
               E AA ++   +T   AL+       L  GD +V +GA   +G   +Q A+  G+  
Sbjct: 138 GLSFEQAAPLLCAGVTVYKALKKAG----LKPGDWVVISGAGGGLGHLGVQYAKAMGLRV 193

Query: 153 INIIRDRAGSDEAKEKL-KGLGADEV--FTESQLEVKNVKGLLANLPEPALG----FNCV 205
           I I  D     + K +L K LGAD    F +S   V+ VK L         G        
Sbjct: 194 IAI--D---VGDEKLELAKELGADAFVDFKKSDD-VEAVKELTGG-----GGAHAVVVTA 242

Query: 206 GGNSASK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKAT- 263
              +A +  L +L  GGT+V  G      I +     + + +++ G        S   T 
Sbjct: 243 VSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVG--------SLVGTR 294

Query: 264 -ECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSK 299
            + +  ++     A  GK+K  +++VP  +      K
Sbjct: 295 QDLQEALE----FAARGKVKPHIQVVPLEDLNEVFEK 327

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 85.1 bits (211), Expect = 7e-19
 Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 20/236 (8%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E P    K NDV +K+ AA +N +D  + +G YP  P    + G E  G V  VGS V R
Sbjct: 20  ESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKR 79

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V+   P  G  +  V     V H + +    E AA I    LTA ++L+    +
Sbjct: 80  FKEGDRVMALLPGGGYAEYAVAHKGHVMH-IPQGYTFEEAAAIPEAFLTAWQLLKKHGDV 138

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA-------- 174
             G S++ +   S VG    Q+A   G  +I        S+E  +  K L A        
Sbjct: 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATII----TTSSEEKVDFCKKLAAIILIRYPD 194

Query: 175 DEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS 230
           +E F     ++   KG+        L  +CVGG+  S+  + L+  G  + YG M 
Sbjct: 195 EEGFAPKVKKLTGEKGV-------NLVLDCVGGSYLSETAEVLAVDGKWIVYGFMG 243

Length = 334

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 83.6 bits (208), Expect = 2e-18
 Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 27/259 (10%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P       +V +++ AA +N +D+ + +G+YP  P    + G E  G V +VG  VT 
Sbjct: 19  EVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTG 78

Query: 63  LAPGD----WVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED 118
              GD     +     + G +  YVV        V +   +  AA +     TA + L  
Sbjct: 79  WKVGDRVCALL-----AGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQ 133

Query: 119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD--- 175
              L +G++++ +G  S VG   IQ+A+  G   I      AGS+E  E  + LGAD   
Sbjct: 134 LGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIAT----AGSEEKLEACRALGADVAI 189

Query: 176 ----EVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK 231
               E F E   E    +G   ++       + VGG+  ++ L+ L+  G +V  G +  
Sbjct: 190 NYRTEDFAEEVKEATGGRG--VDVI-----LDMVGGDYLARNLRALAPDGRLVLIGLLGG 242

Query: 232 KPITVSTSAFIFKDLSLKG 250
               +  +  + K L+L G
Sbjct: 243 AKAELDLAPLLRKRLTLTG 261

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 27/291 (9%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  +     V V++ A+ +NP D     G    RP +PA+ G +  G V +VG  VTR
Sbjct: 19  EVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTR 78

Query: 63  LAPGDWVIPSPP----SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED 118
              GD V           G+   Y V D  +      +  M  AA + +  +TA   L D
Sbjct: 79  FRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVD 138

Query: 119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV- 177
              + +G +++ +G    VG   +Q+A+  G            S E     + LGAD + 
Sbjct: 139 RAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYA-----TASSEKAAFARSLGADPII 193

Query: 178 -----FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK 232
                  E   E    +G         + F+ VGG +     + ++  G +V+  G +  
Sbjct: 194 YYRETVVEYVAEHTGGRGF-------DVVFDTVGGETLDASFEAVALYGRVVSILGGATH 246

Query: 233 PITVSTSAFIFKDLSLKG-FWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
            +   +    F++ +  G F L   L+ E       ++     L   G+L+
Sbjct: 247 DLAPLS----FRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLR 293

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 86/331 (25%), Positives = 132/331 (39%), Gaps = 62/331 (18%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  E    +V +K+ AA +   D+   +G +P R K P + G+E VG V  VG  V R
Sbjct: 17  EVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFP-RGKYPLILGHEIVGTVEEVGEGVER 75

Query: 63  LAPGDWVIPSP--------------------------PSSGTWQSYVVKDQSVWHKVSKD 96
             PGD VI                                G +  YV   +    K+  +
Sbjct: 76  FKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDN 135

Query: 97  SPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHS 152
              E AA +    +     AL+       +  GD+++  GA   VG   IQ+A+  G   
Sbjct: 136 VSDESAA-LAACVVGTAVHALKR----AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARV 190

Query: 153 INIIRDRAGSDEAKEKLKGLGADEVFTESQL--EVKNVKGLLANLPEPALGFNCVGGNSA 210
           I + R    S E  + LK LGAD V   S+   +VK + G              VG  + 
Sbjct: 191 IAVTR----SPEKLKILKELGADYVIDGSKFSEDVKKLGGADV-------VIELVGSPTI 239

Query: 211 SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMID 270
            + L+ L++GG +V  G ++  P  +     I K++ + G        S  AT  +  ++
Sbjct: 240 EESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIG--------SISAT--KADVE 289

Query: 271 YLLCLAREGKLK--YDMELVPFNNFQTALSK 299
             L L +EGK+K   D   V   +   AL  
Sbjct: 290 EALKLVKEGKIKPVIDRV-VSLEDINEALED 319

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 79/306 (25%), Positives = 117/306 (38%), Gaps = 39/306 (12%)

Query: 6   PVEVKENDVCVKMLAAPINPSDINRIEG--------------VYPVRPKVPAVGGYEGVG 51
           PV  K N V +K+ AA +NP D+    G                    + P   G +  G
Sbjct: 24  PVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSG 83

Query: 52  EVYSVGSAVTRLAPGD--WVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNP 109
            V  +GS V     GD  W    P S GT   YVV  ++   K  K+   E AA++    
Sbjct: 84  VVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAG 143

Query: 110 LTALRMLEDFTTLN----SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA 165
           LTA   L +   LN    +G  ++  G +  VG   IQ+ +  G H          S +A
Sbjct: 144 LTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTC-----STDA 198

Query: 166 KEKLKGLGADEV--FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTM 223
              +K LGAD+V  +     E +     L    +  +  + VGG++    LK L +GGT 
Sbjct: 199 IPLVKSLGADDVIDYNNEDFEEE-----LTERGKFDVILDTVGGDTEKWALKLLKKGGTY 253

Query: 224 VTYGG-----MSKKPITVS--TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLA 276
           VT          K  +      SA      ++K             +   + +D L  L 
Sbjct: 254 VTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLV 313

Query: 277 REGKLK 282
            +GK+K
Sbjct: 314 EDGKIK 319

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 45/276 (16%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++   +    +V +++  A +NP D N I     V+P  P + G E  G V  VG  V  
Sbjct: 18  DVKDPKPGPGEVLIRVKMAGVNPVDYNVIN-AVKVKPM-PHIPGAEFAGVVEEVGDHVKG 75

Query: 63  LAPGDWV--------------------------IPSPPSSGTWQSYVVKDQSVWHKVSKD 96
           +  GD V                          I    S+G +  Y+V  +    K+   
Sbjct: 76  VKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDS 135

Query: 97  SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII 156
              E AA++ V  LTA   L+    L  G+++V  GA+   G   +Q+A+  G   I + 
Sbjct: 136 ISDELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194

Query: 157 RDRAGSDEAKEKLKGLGADEVFT--ESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVL 214
           R        K+ LK  GADEV    E + +VK +   +A++       N +G +     L
Sbjct: 195 R--------KDWLKEFGADEVVDYDEVEEKVKEITK-MADVV-----INSLGSSFWDLSL 240

Query: 215 KFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
             L +GG +VT+G ++   + +  S    K +S+ G
Sbjct: 241 SVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIG 276

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 77.0 bits (191), Expect = 3e-16
 Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 16  VKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS 75
           +++ AA +N  D+    G+YP      AV G E  G V  VG  VT LA GD V+    +
Sbjct: 1   IEVRAAGLNFRDVLIALGLYPG----EAVLGGECAGVVTRVGPGVTGLAVGDRVMGL--A 54

Query: 76  SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS 135
            G + + VV D  +   +      E AAT+ V  LTA   L D   L  G+S++ + A  
Sbjct: 55  PGAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAG 114

Query: 136 IVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGLGADE 176
            VGQ  IQ+ARH G  + +       AGS E ++ L+ LG  +
Sbjct: 115 GVGQAAIQLARHLGAEVFAT------AGSPEKRDFLRALGIPD 151

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 59/232 (25%), Positives = 91/232 (39%), Gaps = 18/232 (7%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           +    E    +V V++ A  +N +D+   +G+Y   PK P V G+E  G V +VG  V  
Sbjct: 18  KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKD 77

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V+      G +   V         +      E AA   VN LTA   L +   L
Sbjct: 78  FKVGDRVMGLTR-FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNL 136

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEVFTES 181
             G S++ + A   VG    Q+ +   + ++ ++     +  +K E LK  G   V    
Sbjct: 137 RPGQSVLVHSAAGGVGLAAGQLCKT--VPNVTVV---GTASASKHEALKENGVTHVIDYR 191

Query: 182 QL----EVKNVKGLLANLPEP-ALGFNCVGGNSASKVLKFLSQGGTMVTYGG 228
                 EVK +       PE   +  + +GG    K    L   G +V YG 
Sbjct: 192 TQDYVEEVKKI------SPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGA 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 76.5 bits (189), Expect = 8e-16
 Identities = 86/296 (29%), Positives = 123/296 (41%), Gaps = 31/296 (10%)

Query: 11  ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVI 70
             +V VK     IN SDIN   G Y    K P   G+EGVGEV +VG  VT    GD V 
Sbjct: 30  PGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAV- 88

Query: 71  PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQ 130
            +  S G +  Y V        V +  P E    ++V+ LTA   LE+   + SG++++ 
Sbjct: 89  -ATMSFGAFAEYQVVPARHAVPVPELKP-EV-LPLLVSGLTASIALEEVGEMKSGETVLV 145

Query: 131 NGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQLEVKN 187
             A    GQ  +Q+A+  G H I        SDE  E LK LG D      TE   EV  
Sbjct: 146 TAAAGGTGQFAVQLAKLAGCHVIGT----CSSDEKAEFLKSLGCDRPINYKTEDLGEV-- 199

Query: 188 VKGLLANLPEPA-LGFNCVGGNSASKVLKFLSQGGTMVTYGGMS--KKPITVSTSA---- 240
              L    P+   + +  VGG      +  L+  G ++  G +S  +     S       
Sbjct: 200 ---LKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATL 256

Query: 241 ---FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNF 293
               + K  S++GF+L  +            +D LL L + GKL  +++   F   
Sbjct: 257 PPKLLAKSASVRGFFLPHYAKLIPQH-----LDRLLQLYQRGKLVCEVDPTRFRGL 307

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 10  KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWV 69
              +V +++ A  +N  D+  + G+YP  P  P   G+E  G V +VG  VTRLA GD V
Sbjct: 6   GPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEV 65

Query: 70  IPS-PPSSGTWQSYVVKDQS-VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT--LNSG 125
           I     S G   + V   +  V  K +  S  E  A     P+  L +++ F    L  G
Sbjct: 66  IAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACAL----PVVFLTVIDAFARAGLAKG 121

Query: 126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF 178
           + I+   AT   G   +Q+AR +G      I   A SD+  E LK LG   V 
Sbjct: 122 EHILIQTATGGTGLMAVQLARLKGA----EIYATASSDDKLEYLKQLGVPHVI 170

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 74/330 (22%), Positives = 113/330 (34%), Gaps = 58/330 (17%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
            E+P  E    +V VK+ AA +  SD++ ++G  P   K+P   G+E  G V  VG+ VT
Sbjct: 17  EEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVT 76

Query: 62  RLAPGDWVIPSPP--------------------------SSGTWQSYVVKDQSVWHKVSK 95
               GD V                                 G +  Y+V        V  
Sbjct: 77  NFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPD 136

Query: 96  DSPMEYAATI---IVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHS 152
             P   AA     ++ P  A+               V       +G   +QIA+  G   
Sbjct: 137 GVPFAQAAVATDAVLTPYHAVVR----AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAV 192

Query: 153 INIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN----CVG-G 207
           I +       + AKE    LGADEV         +             GF+     VG  
Sbjct: 193 IAVDIKEEKLELAKE----LGADEVLN-----SLDDSPKDKKAAGLGGGFDVIFDFVGTQ 243

Query: 208 NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN 267
            +     K +  GG +V  G + +  +TV  S  I ++L + G +     + E   E  +
Sbjct: 244 PTFEDAQKAVKPGGRIVVVG-LGRDKLTVDLSDLIARELRIIGSF---GGTPEDLPEVLD 299

Query: 268 MIDYLLCLAREGKLKYDMELVPFNNFQTAL 297
           +I        +GKL   +E  P +     L
Sbjct: 300 LI-------AKGKLDPQVETRPLDEIPEVL 322

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 73.8 bits (182), Expect = 7e-15
 Identities = 100/352 (28%), Positives = 153/352 (43%), Gaps = 56/352 (15%)

Query: 2   IELP-PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVG-GYEGVGEVYSVGSA 59
           I+LP P   K+N++ VK+ AA +NP D+ ++   Y    KV   G G +  G +  VGS 
Sbjct: 18  IKLPLPNCYKDNEIVVKVHAAALNPVDL-KLYNSYTFHFKVKEKGLGRDYSGVIVKVGSN 76

Query: 60  V-TRLAPGDWV--IPSPPSS--GTWQSYVVKD-----QSVWHKVSKDSPMEYAATIIVNP 109
           V +    GD V  I   P    GT   Y++ D     +S+  K    S  E AA     P
Sbjct: 77  VASEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAW----P 132

Query: 110 L---TALRMLEDF-TTLNSGDSIVQNGATSIVGQCIIQIA-RHRGIHSINIIRDRAGSDE 164
           L   TA ++LED    L     ++  G ++ VG+  IQ+A  H  I ++        S  
Sbjct: 133 LVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGT----CSSR 188

Query: 165 AKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPA---LGFNCVGGN----SASKVLKF 216
           + E  K LGAD          VK +K +L N+       L  +CVGG       + +LK 
Sbjct: 189 SAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKP 248

Query: 217 LSQGGTMVTYGGMSK----KPITVSTSAF------IFKDLSLKGFWLQKWL---SSEKAT 263
            S+ G  VT  G  K    K    S          +F  L L  +  Q +L   +++   
Sbjct: 249 KSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIE 308

Query: 264 ECRNMIDYLLCLAREGKLKYDMELV-PFNNFQTALSKALGLHGSQPKQVIKF 314
           +C  +I        +GK+K  ++ V PF +++ A  + L  + ++ K VIK 
Sbjct: 309 KCAELI-------ADGKVKPPIDSVYPFEDYKEAFER-LKSNRAKGKVVIKV 352

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 73.3 bits (181), Expect = 9e-15
 Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 19/187 (10%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           IELP       D+ V++ A  +NP D     G  PV P  P + G++  G V +VGS VT
Sbjct: 21  IELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT 79

Query: 62  RLAPGDWVI--PSPPSSGTWQSYVVKDQ-SVWHKVSKDSPMEYAATIIVNPLTAL----- 113
               GD V         G+   Y + D+  V HK    S  E AA     PLT+L     
Sbjct: 80  LFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAAL----PLTSLTAWEA 135

Query: 114 ---RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
              R+       N G +++  G    VG   IQ+A+   +  + +I   A   E+   +K
Sbjct: 136 LFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQ--LTGLTVIAT-ASRPESIAWVK 192

Query: 171 GLGADEV 177
            LGAD V
Sbjct: 193 ELGADHV 199

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 79/287 (27%), Positives = 123/287 (42%), Gaps = 40/287 (13%)

Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP 71
           ++V V++ AA +N  D+    G+ P         G E  G V  VGS VT L  GD V+ 
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDE---TPLGLECSGIVTRVGSGVTGLKVGDRVMG 57

Query: 72  SPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSI-VQ 130
              + G + ++V  D  +  K+      E AAT+ V  LTA   L D   L  G+S+ + 
Sbjct: 58  L--APGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIH 115

Query: 131 NGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGLG--ADEVFTESQLEVK 186
             A   VGQ  IQ+A+H G  + +        GS+E +E L+ LG   D +F+   L   
Sbjct: 116 AAAGG-VGQAAIQLAQHLGAEVFAT------VGSEEKREFLRELGGPVDHIFSSRDLSF- 167

Query: 187 NVKGLLANLPEPALG-------FNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT---- 235
              G+L      A G        N + G       + L+  G  V    + K+ I     
Sbjct: 168 -ADGILR-----ATGGRGVDVVLNSLSGELLRASWRCLAPFGRFV---EIGKRDILSNSK 218

Query: 236 VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
           +    F+ +++S     L + L+ E+    R ++  +L L   G LK
Sbjct: 219 LGMRPFL-RNVSFSSVDLDQ-LARERPELLRELLREVLELLEAGVLK 263

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 78/329 (23%), Positives = 122/329 (37%), Gaps = 58/329 (17%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  E    +V +K+ A  +  +D++  EG +    K P V G+E VGEV  VG+ V  
Sbjct: 16  EVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWG-GSKYPLVPGHEIVGEVVEVGAGVEG 74

Query: 63  LAPGD-----WVIPS-----------PP-----------SSGTWQSYVVKDQSVWHKVSK 95
              GD     W++ S                        + G +  Y+V D      +  
Sbjct: 75  RKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPD 134

Query: 96  DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI 155
             P+  AA ++   +T    L D      G+ +   G   + G   +Q AR  G  ++ I
Sbjct: 135 GLPLAQAAPLLCAGITVYSALRDA-GPRPGERVAVLGIGGL-GHLAVQYARAMGFETVAI 192

Query: 156 IRDRAGSDEAKEKLKGLGADEV--FTESQLEVKNVKG---LLANLPEPALGFNCVGGNSA 210
            R    S + +E  + LGADEV        E     G   +L  +   A          A
Sbjct: 193 TR----SPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAA---------A 239

Query: 211 SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMID 270
              L  L +GG +V  G     P +      I K  S+ G          +A + +  +D
Sbjct: 240 EAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAG-----STHGGRA-DLQEALD 293

Query: 271 YLLCLAREGKLKYDMELVPFNNFQTALSK 299
                A EGK+K  +E  P +    A  +
Sbjct: 294 ----FAAEGKVKPMIETFPLDQANEAYER 318

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 78/334 (23%), Positives = 119/334 (35%), Gaps = 48/334 (14%)

Query: 2   IELPPVEVKENDVCVKMLAAPINP------SDINRIEGVYPVRPKVPAVGGYEGVGEVYS 55
           +++P  E  E  V ++ L   ++P      SD        PV      VGG   V +V  
Sbjct: 32  VDVP--EPGEGQVLLRTLYLSLDPYMRGRMSDAPSY--APPVELGEVMVGG--TVAKV-- 83

Query: 56  VGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKV-SKDSPMEYAATIIVNP-LTAL 113
           V S      PGD V+        WQ Y + D     K+    +P+     ++  P LTA 
Sbjct: 84  VASNHPGFQPGDIVV----GVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAY 139

Query: 114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GL 172
             L D     +G+++V + A   VG  + QIA+ +G   + I    AG  E  + L   L
Sbjct: 140 FGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGI----AGGAEKCDFLTEEL 195

Query: 173 GADEVFTESQLEVKNVKGLLANLPEPA-----LGFNCVGGNSASKVLKFLSQGGTMVT-- 225
           G D        +          L E       + F  VGG     VL  L+    +    
Sbjct: 196 GFDAGIDYKAEDFA------QALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCG 249

Query: 226 ----YGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 281
               Y      P        + K L ++GF     ++S+        +  L    +EGK+
Sbjct: 250 AISQYNAPELPPGPRRLPLLMAKRLRVQGF----IVASDYDQRFPEALRELGGWVKEGKI 305

Query: 282 KYDMELVP-FNNFQTALSKALGLHGSQPKQVIKF 314
           +Y   +V    N   A    L       K V+K 
Sbjct: 306 QYRETIVDGLENAPEAFIGLLSGKNFG-KLVVKV 338

Length = 340

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 71.0 bits (175), Expect = 5e-14
 Identities = 73/274 (26%), Positives = 107/274 (39%), Gaps = 46/274 (16%)

Query: 8   EVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGD 67
           E    +V V++ A  +N  D+  + G YP   K P +   +G GEV +VG  VTR   GD
Sbjct: 24  EPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGD 83

Query: 68  WVIPS--------------------PPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIV 107
            V+P+                     P  G    YVV  +    +       E AAT+  
Sbjct: 84  RVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPC 143

Query: 108 NPLTALRMLEDFTTLNSGDSI-VQ-NGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA 165
             LTA   L     L  GD++ VQ  G  S+     +Q A+  G   I      + SDE 
Sbjct: 144 AGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFA---LQFAKAAGARVIAT----SSSDEK 196

Query: 166 KEKLKGLGADEVFTESQ-----LEVKNVKGLLANLPEPALGFNCV----GGNSASKVLKF 216
            E+ K LGAD V           EV  + G          G + V    G  + ++ +K 
Sbjct: 197 LERAKALGADHVINYRTTPDWGEEVLKLTG--------GRGVDHVVEVGGPGTLAQSIKA 248

Query: 217 LSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
           ++ GG +   G +S     V     + K  +L+G
Sbjct: 249 VAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRG 282

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 86/350 (24%), Positives = 139/350 (39%), Gaps = 68/350 (19%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++++P       +V V++    I  SD++   G  P     P + G+E  GEV  VG  V
Sbjct: 14  VVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGV 72

Query: 61  TRLAPGDWVIPSPPSS--------------------------GTWQSYVVKDQSVWHKVS 94
             L  GD V+  P  S                          G +  Y+V        V 
Sbjct: 73  AGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVP 131

Query: 95  KDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI 150
           +   ++ AA  +V PL     A+R       + +GD+++  GA  I G  +IQ+A+ RG 
Sbjct: 132 EGLSLDQAA--LVEPLAIGAHAVRR----AGVTAGDTVLVVGAGPI-GLGVIQVAKARGA 184

Query: 151 HSI--NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN 208
             I  +I  +R   + A+E    LGAD+       +V      L +     +  +  G N
Sbjct: 185 RVIVVDIDDERL--EFARE----LGADDTINVGDEDVAARLRELTDGEGADVVIDATG-N 237

Query: 209 SAS--KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR 266
            AS  + ++ ++ GG +V   G+SK P+T     F  K+L++        L S  AT  R
Sbjct: 238 PASMEEAVELVAHGGRVV-LVGLSKGPVTFPDPEFHKKELTI--------LGSRNAT--R 286

Query: 267 NMIDYLLCLAREGKLKYDM---ELVPFNNFQTALSKALGLHGSQPKQVIK 313
                ++ L   GK+  +       PF +   A         + P  VIK
Sbjct: 287 EDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWE----APPGGVIK 332

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 70.6 bits (174), Expect = 9e-14
 Identities = 92/348 (26%), Positives = 125/348 (35%), Gaps = 90/348 (25%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           +EL        +V V++ AA +  SD++ + G  P    +PAV G+EG G V  VG  VT
Sbjct: 18  VELDDP--GPGEVLVRIAAAGLCHSDLHVVTGDLPAP--LPAVLGHEGAGVVEEVGPGVT 73

Query: 62  RLAPGDWVIPSP-PSSGT--W----QSY-------------------------------- 82
            + PGD V+ S  P+ GT  +    Q                                  
Sbjct: 74  GVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCG 133

Query: 83  --------VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT 134
                   VV + SV  K+  D P++ AA +     T +        +N+    V+ G T
Sbjct: 134 LGTFAEYTVVPEASVV-KIDDDIPLDRAALLGCGVTTGVG-----AVVNTAR--VRPGDT 185

Query: 135 SIV------GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKN 187
             V      G   IQ AR  G   I I  D     E  E  +  GA      S+ + V+ 
Sbjct: 186 VAVIGCGGVGLNAIQGARIAGASRI-IAVDP--VPEKLELARRFGATHTVNASEDDAVEA 242

Query: 188 VKGLLANLPEPALG----FNCVG-GNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFI 242
           V+ L         G    F  VG   +  + L    +GGT V  G       TVS  A  
Sbjct: 243 VRDLTD-----GRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGE-TVSLPALE 296

Query: 243 FKDLSLKGFWLQKWLSSEKATECRNMIDY--LLCLAREGKLKYDMELV 288
                   F  +K L            D   LL L R G+LK D ELV
Sbjct: 297 L-------FLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLD-ELV 336

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 70/249 (28%), Positives = 97/249 (38%), Gaps = 32/249 (12%)

Query: 49  GVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY-VVKDQSVWHKV--SKDSPMEYAATI 105
           GVGEV  V S       GD V         WQ Y VV   S   K+  S   P+     +
Sbjct: 72  GVGEV--VESRSPDFKVGDLVSGFLG----WQEYAVVDGASGLRKLDPSLGLPLSAYLGV 125

Query: 106 IVNP-LTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE 164
           +    LTA   L +      G+++V + A   VG  + QIA+  G   + I    AGSDE
Sbjct: 126 LGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGI----AGSDE 181

Query: 165 AKEKLKG-LGADEVFT--ESQLEVKNVKGLLANLPEPA-LGFNCVGGNSASKVLKFLSQG 220
               L   LG D         L     + L    P+   + F+ VGG      L  L++G
Sbjct: 182 KCRWLVEELGFDAAINYKTPDLA----EALKEAAPDGIDVYFDNVGGEILDAALTLLNKG 237

Query: 221 GTMVTYGGMS----KKPITVSTSAFI-FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCL 275
           G +   G +S     +P        I  K L+++GF     + S+ A      +  L   
Sbjct: 238 GRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGF-----IVSDYADRFPEALAELAKW 292

Query: 276 AREGKLKYD 284
             EGKLKY 
Sbjct: 293 LAEGKLKYR 301

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 14/123 (11%)

Query: 137 VGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANL 195
           VG   +Q+A+  G   + I  DR  S+E  E  K LGAD V      + V+ V+ L    
Sbjct: 2   VGLAAVQLAKALGAARV-IAVDR--SEEKLELAKELGADHVINYRDEDFVERVRELT--- 55

Query: 196 PEPALG----FNCVGGNSASKV-LKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
                G     +CVG  +  +  L+ L  GG +V  G     P+       + K+L++ G
Sbjct: 56  --GGRGVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILG 113

Query: 251 FWL 253
              
Sbjct: 114 SLG 116

Length = 131

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 71/293 (24%), Positives = 118/293 (40%), Gaps = 40/293 (13%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           + E+P  E    +V +K+ AA I  SD++  +G Y    + P V G+E  G +  VG  V
Sbjct: 16  LREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD-PVETPVVLGHEFSGTIVEVGPDV 74

Query: 61  TRLAPGDWVI----------------------PSPPSSGTWQS-----YVVKDQSVWHKV 93
                GD V+                      P     GT        YV+  +   H++
Sbjct: 75  EGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHEL 134

Query: 94  SKDSPMEYAATIIVNPLT-ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--I 150
            ++  +E AA  +  PL  A+  + + + +  GD++V  G    +G    Q+A+ +G  +
Sbjct: 135 PENLSLEAAA--LTEPLAVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATV 191

Query: 151 HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA 210
             +   +D    D AKE    LGAD V    +   + V  +  +     +   C G   A
Sbjct: 192 VVVGTEKDEVRLDVAKE----LGADAVNGGEEDLAELVNEI-TDGDGADVVIECSGAVPA 246

Query: 211 SK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKA 262
            +  L+ L +GG +V  G       ++     I K+LS+ G       S E A
Sbjct: 247 LEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTPASWETA 299

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 82/352 (23%), Positives = 124/352 (35%), Gaps = 58/352 (16%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           + E PP      DV +++ A  I  SD++   G  P  P    + G+E VGEV  VG  V
Sbjct: 15  LEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VV 73

Query: 61  TRLAPGDWVIPSPPSS-------------------------------GTWQSYV-VKDQS 88
                GD V+  P                                  G +  YV V    
Sbjct: 74  RGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADF 133

Query: 89  VWHKVSKDSPMEYAATIIVNPL-TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARH 147
              K+      E AA  +  PL TA     +   +  G ++V  GA  I G   I +A+ 
Sbjct: 134 NLAKLPDGIDEEAAA--LTEPLATAYHGHAERAAVRPGGTVVVVGAGPI-GLLAIALAKL 190

Query: 148 RGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPA-LGFNCVG 206
            G   + I+ DR  S E  E  K  G  +V      +    + L       A +    VG
Sbjct: 191 LGASVV-IVVDR--SPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247

Query: 207 GNSASK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATEC 265
              A    L+ L  GGT+V  G    + I +     + K+L+L+G               
Sbjct: 248 SPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSL---------RPSG 298

Query: 266 RNMIDYLLCLAREGKLKYDM---ELVPFNNFQTALSKALGLHGSQPKQVIKF 314
           R   +  L L   GK+  +      +P ++      +A  L   + ++ IK 
Sbjct: 299 REDFERALDLLASGKIDPEKLITHRLPLDDAA----EAYELFADRKEEAIKV 346

Length = 350

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 84/304 (27%), Positives = 130/304 (42%), Gaps = 55/304 (18%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ELPP+  K+ +V  + L   ++P    R    Y  R           V +V  + S  ++
Sbjct: 27  ELPPL--KDGEVLCEALFLSVDP--YMR---PYSKRLNEGDTMIGTQVAKV--IESKNSK 77

Query: 63  LAPGDWVIPSPPSSGTWQSYVV---KDQSVWHKV----SKDSPMEYAATIIVNP-LTALR 114
              G  V+ S    G W+++ V   KDQ   +K+      D P   A  ++  P LTA  
Sbjct: 78  FPVGTIVVAS---FG-WRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYF 133

Query: 115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA 174
            L +     +G+++V NGA   VG  + QIA+ +G   I      AGSD+    LK LG 
Sbjct: 134 GLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGC----AGSDDKVAWLKELGF 189

Query: 175 DEVFTESQLEVKNVKGLLANL-PEPALGFNC----VGGNSASKVLKFLSQGGTMV----- 224
           D VF     +  +++  L    P+   G +C    VGG  +S VL  ++  G +      
Sbjct: 190 DAVF---NYKTVSLEEALKEAAPD---GIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSI 243

Query: 225 -TYGGMSKKPITVSTSAFIFKDLSLKGF----WLQKWLSSEKATECRNMIDYLLCLAREG 279
            TY     K         IFK L ++GF    W  +W    +A +   ++ ++     EG
Sbjct: 244 STYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRW---PEALK--QLLKWIK----EG 294

Query: 280 KLKY 283
           KLKY
Sbjct: 295 KLKY 298

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 67.6 bits (166), Expect = 9e-13
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 54/284 (19%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  E   ++V +K+ A  I  +D++  EG +      P V G+E  G V +VGS VT 
Sbjct: 16  EVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFG--AAPPLVPGHEFAGVVVAVGSKVTG 73

Query: 63  LAPGDWVI--PSPP------------------------SSGTWQSYVVKDQSVWHKVSKD 96
              GD V   P+                           +G +  YVV      +K+  +
Sbjct: 74  FKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDN 133

Query: 97  SPMEYAATIIVNPLT-ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI 155
              E AA     PL+ A+  L D   +  GDS++  GA  I G  + Q+ +  G   + +
Sbjct: 134 LSFEEAALA--EPLSCAVHGL-DLLGIKPGDSVLVFGAGPI-GLLLAQLLKLNGASRVTV 189

Query: 156 IRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGFN----CVGGNSA 210
               A  +E K +L K LGA E    S+ + +  K           GF+      G    
Sbjct: 190 ----AEPNEEKLELAKKLGATETVDPSREDPEAQKED------NPYGFDVVIEATG--VP 237

Query: 211 SKV---LKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKG 250
             +   +++  +GGT++ +G  +    +++S      K+L++ G
Sbjct: 238 KTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIG 281

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 19/255 (7%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P    K  +V +++ AA +N  D+ +  G YP  P    + G E  GEV +VG  V+R
Sbjct: 19  EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSR 78

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V       G  + YV         V +   +  AA +     T    L     L
Sbjct: 79  WKVGDRVCALVAGGGYAE-YVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGL 137

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---T 179
            +G++++ +G  S +G   IQ+A+  G          AGSDE     + LGAD       
Sbjct: 138 KAGETVLIHGGASGIGTTAIQLAKAFGARVFTT----AGSDEKCAACEALGADIAINYRE 193

Query: 180 ESQLEVKNVKGLLANLPEPALGFNC----VGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 235
           E  +EV  VK           G +     VGG+  ++ +K L+  G +V  G    +   
Sbjct: 194 EDFVEV--VKAETGG-----KGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQGGRKAE 246

Query: 236 VSTSAFIFKDLSLKG 250
           +     + K L++ G
Sbjct: 247 LDLGPLLAKRLTITG 261

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 11 ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVI 70
            +V V++ AA I  SD++   G  P   K+P + G+EG G V  VG  VT L  GD V+
Sbjct: 1  PGEVLVRVKAAGICGSDLHIYRGEPP-PVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVV 59

Query: 71 PSPPSS 76
            P   
Sbjct: 60 VYPLIP 65

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 16/243 (6%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSD--INRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           ++P        V + + AA ++  D  +    G  P  P++P V G E  G V +VG  V
Sbjct: 19  DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGV 78

Query: 61  TRLAPGDW-----VIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRM 115
                  W     V  +  + G +    V D    H V     +E A  ++ +  TAL +
Sbjct: 79  ----DPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGL 134

Query: 116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD 175
           L D  TL  GD ++   A   +G  ++Q+A+  G   +      AG       ++ LGAD
Sbjct: 135 L-DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGA----AGGPAKTALVRALGAD 189

Query: 176 EVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 235
                ++ +  +            +  + VGG      L  L+ GG  +TYG  S +   
Sbjct: 190 VAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGEWTA 249

Query: 236 VST 238
           +  
Sbjct: 250 LDE 252

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 76/292 (26%), Positives = 119/292 (40%), Gaps = 58/292 (19%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDIN-----RIEGVYPVRPKVPAVGGYEGVGEVYS 55
           + E P  E    +V V++ A  I  SD++     RI G + V+   P V G+E  G V +
Sbjct: 12  LEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRI-GDFVVKE--PMVLGHESAGTVVA 68

Query: 56  VGSAVTRLAPGDWV-----IP----------------------SPPSSGTWQSYVVKDQS 88
           VGS VT L  GD V     +P                      +PP  GT   YV     
Sbjct: 69  VGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPAD 128

Query: 89  VWHKVSKDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQI 144
             HK+  +  +E  A  +V PL+    A R       +  GD+++  GA  I G     +
Sbjct: 129 FCHKLPDNVSLEEGA--LVEPLSVGVHACRRAG----VRPGDTVLVFGAGPI-GLLTAAV 181

Query: 145 ARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEVF----TESQLEVKNVKGLLANLPEPA 199
           A+  G   + ++ D    D ++ E  K LGA         ++    + +  LL     P 
Sbjct: 182 AKAFGATKV-VVTDI---DPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLG-GKGPD 236

Query: 200 LGFNCVGGNSASKVLKF-LSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
           +   C G  S  +   +    GGT+V   GM K  +T+  SA   +++ ++G
Sbjct: 237 VVIECTGAESCIQTAIYATRPGGTVVL-VGMGKPEVTLPLSAASLREIDIRG 287

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 66/296 (22%), Positives = 111/296 (37%), Gaps = 52/296 (17%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  +++   V V++  A +  SD++ + G  P  P +P + G+EGVG V ++G  VT 
Sbjct: 17  EVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVP-LPIILGHEGVGRVVALGGGVTT 75

Query: 63  ------LAPGDWVI---------------------------------PSPPSSGTWQSYV 83
                 L  GD V                                    P  SG +  ++
Sbjct: 76  DVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHI 135

Query: 84  V--KDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCI 141
                 ++  +V  + P E AA       T L  L+    + +GD++V  GA   +G   
Sbjct: 136 YLPPGTAIV-RVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYA 193

Query: 142 IQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV--FTESQLEVKNVKGLLANLPEPA 199
           +  A+  G   + I+ D  GS E  E  +  GAD      E     +            A
Sbjct: 194 VAAAKLAGARRV-IVID--GSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGA 250

Query: 200 -LGFNCVGGNSA-SKVLKFLSQGGTMVTYG-GMSKKPITVSTSAFIFKDLSLKGFW 252
            +     G  +A  + L+ L +GGT V  G       + +     + K+L++ G  
Sbjct: 251 DVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVH 306

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 71/295 (24%), Positives = 110/295 (37%), Gaps = 59/295 (20%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEG---VYPVRP-------KVPAVGGYEGVGE 52
           E+P   VK  +V +K+    I  SD++         P            P   G+E  G 
Sbjct: 16  EVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGV 75

Query: 53  VYSVGSAVTRLAPGDWVIPSP---------------------------PSSGTWQSYVVK 85
           V  VGS VT    GD V+  P                              G +  YVV 
Sbjct: 76  VVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVV 135

Query: 86  DQSVWHKVSKDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCI 141
                HK+  + P+E AA  +V PL     A+R          GD+ +  GA  I G   
Sbjct: 136 PAYHVHKLPDNVPLEEAA--LVEPLAVAWHAVRRSG----FKPGDTALVLGAGPI-GLLT 188

Query: 142 IQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG 201
           I   +  G   I I+ +   S+  +E  + LGA  V   ++++V      L       + 
Sbjct: 189 ILALKAAGASKI-IVSEP--SEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVS 245

Query: 202 FNCVG----GNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFW 252
           F+C G     ++A   L+     GT V    + +KPI+ + +  + K+ +L G  
Sbjct: 246 FDCAGVQATLDTAIDALRP---RGTAVNV-AIWEKPISFNPNDLVLKEKTLTGSI 296

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 78/286 (27%), Positives = 111/286 (38%), Gaps = 52/286 (18%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           I  P  E    +V VK+ A  I  SDI R  G     P  P V G+E  G V  VGS V 
Sbjct: 17  IPKP--EPGPGEVLVKVKACGICGSDIPRYLGTGAYHP--PLVLGHEFSGTVEEVGSGVD 72

Query: 62  RLAPGDWV--IPSPP------------------------SSGTWQSYV-VKDQSVWHKVS 94
            LA GD V   P  P                          G +  YV V  +++  K+ 
Sbjct: 73  DLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNL-IKIP 131

Query: 95  KDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI 150
                E AA I   P      A+R+      +  GD++V  GA +I G   IQ  +  G 
Sbjct: 132 DHVDYEEAAMI--EPAAVALHAVRLAG----ITLGDTVVVIGAGTI-GLLAIQWLKILGA 184

Query: 151 HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA 210
             +  + D    DE     + LGAD+     + +V+ V+ L        L     G  + 
Sbjct: 185 KRVIAV-DI--DDEKLAVARELGADDTINPKEEDVEKVRELTEGR-GADLVIEAAGSPAT 240

Query: 211 SK-VLKFLSQGGTMVTYGGMSKKPITVSTSAF---IFKDLSLKGFW 252
            +  L     GG  V   G+    +T+S  AF   + K+L+++G W
Sbjct: 241 IEQALALARPGGK-VVLVGIPYGDVTLSEEAFEKILRKELTIQGSW 285

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5  PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLA 64
          PP   K  +V +K++A  +  +D++ I+G  P    +P + G+EG G V S+G  VT L 
Sbjct: 22 PP---KAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLK 76

Query: 65 PGDWVIPS 72
          PGD VIP 
Sbjct: 77 PGDKVIPL 84

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 22/259 (8%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
            LP  ++ E DV +++  + +N  D     G   V    P   G +  G V  V S   R
Sbjct: 19  TLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTV--VSSDDPR 76

Query: 63  LAPGDWVIP-----SPPSSGTWQSYV-VKDQSVW-HKVSKDSPMEYAATIIVNPLTA--- 112
              GD V+         + G +  YV V   + W   + +   +  A  +     TA   
Sbjct: 77  FREGDEVLVTGYDLGMNTDGGFAEYVRVP--ADWVVPLPEGLSLREAMILGTAGFTAALS 134

Query: 113 -LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG 171
             R+ ++  T   G  +V  GAT  VG   + I    G +++  +    G +E  + LK 
Sbjct: 135 VHRLEDNGQTPEDGPVLV-TGATGGVGSIAVAILAKLG-YTVVAL---TGKEEQADYLKS 189

Query: 172 LGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK 231
           LGA EV     L  ++ K LL      A   + VGG+  + +LK    GG + + G  + 
Sbjct: 190 LGASEVLDREDLLDESKKPLLK--ARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAG 247

Query: 232 KPITVSTSAFIFKDLSLKG 250
             +T +   FI + +SL G
Sbjct: 248 PELTTTVLPFILRGVSLLG 266

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 63/289 (21%), Positives = 115/289 (39%), Gaps = 54/289 (18%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
            + +P  E    +V VK+ A  I  +D+ +I G +    K P + G+E  GE+  VG  V
Sbjct: 16  EVPVP--EPGPGEVLVKVRACGICGTDVKKIRGGH-TDLKPPRILGHEIAGEIVEVGDGV 72

Query: 61  TRLAPGDWVIPSP--------------------------PSSGTWQSYV-VKDQSVWH-- 91
           T    GD V  +P                             G +  YV V   +V    
Sbjct: 73  TGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGG 132

Query: 92  --KVSKDSPMEYAATIIVNPL-TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHR 148
             K+  +   E AA  +V PL   +        +  GD+++  GA  I G     +A+  
Sbjct: 133 VLKLPDNVSFEEAA--LVEPLACCINAQRKA-GIKPGDTVLVIGAGPI-GLLHAMLAKAS 188

Query: 149 GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV-----KGLLANLPEPALGFN 203
           G   + I+ D   ++   E  K LGAD     ++ ++         G  A+     +   
Sbjct: 189 GARKV-IVSDL--NEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGAD-----VVIV 240

Query: 204 CVGGNSA-SKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKG 250
             G   A ++ L+ + +GG ++ +GG+ K   + +  +   ++++++ G
Sbjct: 241 ATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITG 289

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 5  PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLA 64
          PP   K N+V +KMLA  +  +DI  IEG        P + G+EG G V SVG  VT L 
Sbjct: 24 PP---KANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLK 78

Query: 65 PGDWVIP 71
          PGD VIP
Sbjct: 79 PGDKVIP 85

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 83/339 (24%), Positives = 135/339 (39%), Gaps = 71/339 (20%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVR--PKVPAVGGYEGVGEVYSVGSAV 60
           ++P  E     V V++  A +  SD++ I+GV+      K+P   G+E  G V  VGS V
Sbjct: 17  DVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGV 76

Query: 61  TRLAPGDWVI-----------------------PSPPSSGTWQSY----VVKDQSVWHKV 93
             L  GD V+                          P  GT   +    +V  + +    
Sbjct: 77  DGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLP 136

Query: 94  SKDSPMEYAATIIVNPLT--------ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIA 145
               P+E A      PL         A++    +  L+ G ++V  G    +G   +QI 
Sbjct: 137 RGLDPVEAA------PLADAGLTAYHAVKKALPY--LDPGSTVVVIGVGG-LGHIAVQIL 187

Query: 146 RHRGIHSINIIR-DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC 204
             R +    +I  DR  S+EA +  + LGAD V   S   V+ V+ L       A+  + 
Sbjct: 188 --RALTPATVIAVDR--SEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAV-IDF 242

Query: 205 VGGNSASKV-LKFLSQGG--TMVTYGGMSKKPITVSTSAFIFKDLSLKG-FWLQKWLSSE 260
           VG +    +  K L++GG   +V YGG       + TS  +  ++S+ G  W        
Sbjct: 243 VGSDETLALAAKLLAKGGRYVIVGYGG----HGRLPTSDLVPTEISVIGSLW-------- 290

Query: 261 KATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSK 299
             T  R  +  ++ LA  GK+K ++   P  +   AL +
Sbjct: 291 -GT--RAELVEVVALAESGKVKVEITKFPLEDANEALDR 326

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 102 AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG 161
           AAT+ V  +TALR L     L  G  ++  GA+  VG+  +Q+A   G H + ++   A 
Sbjct: 111 AATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPAR 169

Query: 162 SDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGG 221
           ++  +E      A+ V   S+L    V  ++ +          VGG   ++ L+ L+ GG
Sbjct: 170 AEGLRELG---AAEVVVGGSELSGAPVDLVVDS----------VGGPQLARALELLAPGG 216

Query: 222 TMVTYGGMSKKPITVSTSAFIFK--DLSLKGFWL 253
           T+V+ G  S +P   + +AF+       L  F+L
Sbjct: 217 TVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFL 250

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 81/328 (24%), Positives = 128/328 (39%), Gaps = 80/328 (24%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  E    +V +K+ A  +  +D++ +EG  P  PK+P + G+E VG V +VG  VTR
Sbjct: 21  EVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR 79

Query: 63  LAPGDWV-IPSPPSS--------------------------GTWQSYVVKDQSVWHKVSK 95
            + GD V +P   S+                          G +  Y+V D+   + + +
Sbjct: 80  FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPE 139

Query: 96  DSPMEYAATIIVNPL--------TALRMLEDFTTLNSGDSIVQNGATSI--VGQCIIQIA 145
           D   E AA     PL         AL++      L  G  +   G           +QIA
Sbjct: 140 DYDDEEAA-----PLLCAGIIGYRALKLAG----LKPGQRL---GLYGFGASAHLALQIA 187

Query: 146 RHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEP---ALGF 202
           R++G       R     + A+E    LGAD                    PEP   A+ F
Sbjct: 188 RYQGAEVFAFTRSGEHQELARE----LGADWAGDSDD-----------LPPEPLDAAIIF 232

Query: 203 NCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKA 262
             V G      L+ + +GG +V   G+    I     AF ++ L     W +K + S   
Sbjct: 233 APV-GALVPAALRAVKKGGRVVL-AGIHMSDI----PAFDYELL-----WGEKTIRSVAN 281

Query: 263 TECRNMIDYLLCLAREGKLKYDMELVPF 290
              ++  ++ L LA E  +K ++E  P 
Sbjct: 282 LTRQDGEEF-LKLAAEIPIKPEVETYPL 308

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 74/318 (23%), Positives = 124/318 (38%), Gaps = 71/318 (22%)

Query: 10  KENDVCVKMLAAPINPSDINRIEGVY--PVRPKVPAVGGYEG-----------------V 50
              +V +++ A  +N +DIN  EG Y   V     + G  E                  V
Sbjct: 27  APGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIV 86

Query: 51  GEVYSVGSAVTRLAPGDWVI-------PSPPSS-----------GTWQSY-VVKDQSVWH 91
           G V +VG  V     G+ V+       P                G +  Y VV  ++  +
Sbjct: 87  GRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENA-Y 145

Query: 92  KVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH 151
            V+        AT   +  TA  MLE    + +G++++  GA+  VG  ++Q+A+ RG  
Sbjct: 146 PVNSPLSDVELATFPCSYSTAENMLER-AGVGAGETVLVTGASGGVGSALVQLAKRRGAI 204

Query: 152 SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGL-------LANLPEPALGFNC 204
            I +    AG+ +  E ++ LGAD V       + + K L       +A++         
Sbjct: 205 VIAV----AGAAKE-EAVRALGADTVILRDAPLLADAKALGGEPVDVVADV--------- 250

Query: 205 VGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATE 264
           VGG     +L+ L  GG  VT G ++   + +       KDL+L G  L           
Sbjct: 251 VGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLG------TREV 304

Query: 265 CRNMIDYLLCLAREGKLK 282
            R ++ Y+     EG+++
Sbjct: 305 FRRLVRYI----EEGEIR 318

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 21/187 (11%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDI-----NRIEGVYPVRPKVPAVGGYEGVGEVYS 55
           + E P        V V++    +  SD+      R   VYP  P  P   G+EG G V +
Sbjct: 9   VEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGP---GHEGWGRVVA 65

Query: 56  VGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPL-TALR 114
           +G  V  LA GD V     S G +  Y + D            +         PL  AL 
Sbjct: 66  LGPGVRGLAVGDRVAGL--SGGAFAEYDLADAD---HAVPLPSLLDGQAFPGEPLGCALN 120

Query: 115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII-RDRAGSDEAKEKLKGLG 173
           +      + +G ++   GA  I G   +Q+A   G   +  I R  A    A+E    LG
Sbjct: 121 VFR-RGWIRAGKTVAVIGAGFI-GLLFLQLAAAAGARRVIAIDRRPARLALARE----LG 174

Query: 174 ADEVFTE 180
           A EV T+
Sbjct: 175 ATEVVTD 181

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
          ++L P   +  +V V++ A  +  +D + + G  P     PAV G+EG G V +VG  VT
Sbjct: 20 VDLDPP--RAGEVLVRITATGVCHTDAHTLSGDDPEG--FPAVLGHEGAGIVEAVGEGVT 75

Query: 62 RLAPGDWVIPS 72
           + PGD VI  
Sbjct: 76 SVKPGDHVILL 86

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
          IE+ P +  E  V +K++A  I  SD + + G        P + G+E  G V SVG  VT
Sbjct: 25 IEVAPPKAHE--VRIKIVATGICRSDDHVVSGKLV--TPFPVILGHEAAGIVESVGEGVT 80

Query: 62 RLAPGDWVIP 71
           + PGD VIP
Sbjct: 81 TVKPGDKVIP 90

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 6/79 (7%)

Query: 2  IEL-PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
          IEL  P   K  +V VK++A+ +  SD + + G  P+ P+ P +GG+EG G V  VG  V
Sbjct: 19 IELDDP---KAGEVLVKLVASGLCHSDEHLVTGDLPM-PRYPILGGHEGAGVVTKVGPGV 74

Query: 61 TRLAPGDWVIPS-PPSSGT 78
          T + PGD V+ S  P+ G 
Sbjct: 75 TGVKPGDHVVLSFIPACGR 93

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 30  RIEGVYPVRPKVPAVG--GYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQ 87
            +EG+     K+P     GY  VG V  VGS VT   PGD V       G     VV   
Sbjct: 7   ALEGLSTGTEKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVF----CFGPHAERVVVPA 62

Query: 88  SVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARH 147
           ++   +    P E AA   +   TAL  + D      G+ +   G   +VG    Q+A+ 
Sbjct: 63  NLLVPLPDGLPPERAALTALAA-TALNGVRD-AEPRLGERVAVVGL-GLVGLLAAQLAKA 119

Query: 148 RG 149
            G
Sbjct: 120 AG 121

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 57/284 (20%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  +  +++V +K+  A +   D+ +++G YP R K P + G+E VG V  VG  V  
Sbjct: 17  EVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYP-RMKYPVILGHEVVGTVEEVGENVKG 75

Query: 63  LAPGDWVIP--------------------------SPPSSGTWQSYVVKDQSVWHKVSKD 96
             PGD V                                 G +  Y     +   KV  +
Sbjct: 76  FKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPN 135

Query: 97  SPMEYA-------ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG 149
              E A         +       LR       +  G++++  GA   VG   IQ+A+  G
Sbjct: 136 VSDEGAVIVPCVTGMVY----RGLRRAG----VKKGETVLVTGAGGGVGIHAIQVAKALG 187

Query: 150 IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL--EVKNVKGLLANLPEPALGFNCVGG 207
              I +      S E+K K+    AD V   S+   EVK + G         +    VG 
Sbjct: 188 AKVIAVT-----SSESKAKIVSKYADYVIVGSKFSEEVKKIGG-------ADIVIETVGT 235

Query: 208 NSASKVLKFLSQGGTMVTYGGMSKKPI-TVSTSAFIFKDLSLKG 250
            +  + L+ L+ GG ++  G +   P  ++     I KD+ + G
Sbjct: 236 PTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIG 279

Length = 334

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 29/221 (13%)

Query: 79  WQSYVVKDQSVWHKVSKD----SPMEYAATIIVNP-LTALRMLEDFTTLNSGDSIVQNGA 133
           W S+ + D     K+  +     P+  A   +  P LTA   L +   +  G++++ N A
Sbjct: 88  WTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAA 147

Query: 134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLA 193
              VG  + QIA+ +G   +      AGSDE    LK LG D  F       K VK L  
Sbjct: 148 AGAVGSVVGQIAKLKGCKVVGA----AGSDEKVAYLKKLGFDVAFN-----YKTVKSLEE 198

Query: 194 NLPEPAL-GFNC----VGGNSASKVLKFLSQGGTMVTYGGMSKK------PITVSTSAFI 242
            L + +  G++C    VGG  ++ V+  + + G +   G +S        P        I
Sbjct: 199 TLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVI 258

Query: 243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY 283
           +++L ++GF + +W    +    + ++ ++L    EGK++Y
Sbjct: 259 YQELRMEGFIVNRWQGEVRQKALKELLKWVL----EGKIQY 295

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 13/189 (6%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           I+LP  +    D+ V++ A  +NP D      + P     P + G++  G V +VG  VT
Sbjct: 20  IDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAP-EAGQPKILGWDAAGVVVAVGDEVT 78

Query: 62  RLAPGD--WVIPSPPSSGTWQSY-VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED 118
              PGD  W        G+   + +V ++ V HK  K      AA + +  +TA  +L D
Sbjct: 79  LFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHK-PKSLSFAEAAALPLTSITAWELLFD 137

Query: 119 FTTLN-----SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG 173
              +N        +++  G    VG  +IQ+AR   +  + +I   A   E++E +  LG
Sbjct: 138 RLGINDPVAGDKRALLIIGGAGGVGSILIQLARQ--LTGLTVI-ATASRPESQEWVLELG 194

Query: 174 ADEVFTESQ 182
           A  V   S+
Sbjct: 195 AHHVIDHSK 203

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 78/301 (25%), Positives = 119/301 (39%), Gaps = 81/301 (26%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVY------PVRPKVPAVGGYEGVGEVY 54
           ++E+P  +    +V +K+LAA I  +D++    +Y        R K P + G+E  GEV 
Sbjct: 15  LVEVPVPKPGPGEVLIKVLAASICGTDVH----IYEWDEWAQSRIKPPLIFGHEFAGEVV 70

Query: 55  SVGSAVTRLAPGDWV-----IP---SPPS------------------SGTWQSYV-VKDQ 87
            VG  VTR+  GD+V     I                           G +  YV V ++
Sbjct: 71  EVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEE 130

Query: 88  SVWHKVSKDSPMEYAATIIVNPL-----TALRMLEDFTTLNSGDSIVQNGATSIVGQCII 142
           ++W K  KD P E A+  I  PL     T L          SG S++  G   I G   I
Sbjct: 131 NLW-KNDKDIPPEIAS--IQEPLGNAVHTVL------AGDVSGKSVLITGCGPI-GLMAI 180

Query: 143 QIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF 202
            +A+  G   + I  D   +    E  K +GAD V    + +V  VK +           
Sbjct: 181 AVAKAAGASLV-IASDP--NPYRLELAKKMGADVVINPREEDVVEVKSVT---------- 227

Query: 203 NCVGGNSASKVLKF------LSQGGTMVTYGG-MS-----KKPITVS-TSAFIFKDLSLK 249
               G     VL+       + QG   +T GG +S       P+ +   +  IFK L+++
Sbjct: 228 ---DGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQ 284

Query: 250 G 250
           G
Sbjct: 285 G 285

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 6  PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAP 65
          P      D  V++    I  SD++   G     P    V G+E +GEV  VGSAV  L  
Sbjct: 20 PKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEP--GLVLGHEAMGEVEEVGSAVESLKV 77

Query: 66 GDWVI 70
          GD V+
Sbjct: 78 GDRVV 82

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 65/229 (28%), Positives = 92/229 (40%), Gaps = 53/229 (23%)

Query: 3   ELPPVEVK-ENDVCVKMLAAPINPSDINRI--EGV--YPVRPKVPAVGGYEGVGEVYSVG 57
           E P  E+K ++DV VK+ ++ +  SDI RI   G   YP+        G+E  G V +VG
Sbjct: 16  ESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGAHYYPI------TLGHEFSGYVEAVG 69

Query: 58  SAVTRLAPGDWV--IPSPP------------------------SSGTWQSYVVKDQSVWH 91
           S V  L PGD V  +P  P                          G    Y+V  +    
Sbjct: 70  SGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLF 129

Query: 92  KVSKDSPMEYAATIIVNPLTALRMLEDFTTLN--SGDSIVQNGATSIVGQCIIQIARHRG 149
            +  D P+E  A I   P+T    L  F       G +++  GA +I G   IQ A   G
Sbjct: 130 ALPTDMPIEDGAFI--EPITV--GLHAFHLAQGCEGKNVIIIGAGTI-GLLAIQCAVALG 184

Query: 150 IHSINIIRDRAGSDEAKEKL---KGLGADEVFTESQLEVKNVKGLLANL 195
             S+  I      D   EKL   K LGA + F   ++    ++ +L  L
Sbjct: 185 AKSVTAI------DINSEKLALAKSLGAMQTFNSREMSAPQIQSVLREL 227

Length = 347

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 52/288 (18%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDIN--RIEGVYPVRPKVPAVGGYEGVGEVYSVGS 58
           + E P  E    +V V++ A  I  SD++  +  G   VR + P V G+E  G V +VG 
Sbjct: 11  VEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGP 70

Query: 59  AVTRLAPGDWVI--PSPPS-----------------------------SGTWQSYVVKDQ 87
            VT LAPG  V   PS P                               G ++ Y+V D 
Sbjct: 71  GVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDA 130

Query: 88  SVWHKVSKDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQ 143
           S    +     +  AA  +  PL     A+    D      G  ++  GA  I G  ++ 
Sbjct: 131 SQCVPLPDGLSLRRAA--LAEPLAVALHAVNRAGDLA----GKRVLVTGAGPI-GALVVA 183

Query: 144 IARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN 203
            AR  G   I +  D A  D      + +GADE      L    +    A+  +  + F 
Sbjct: 184 AARRAGAAEI-VATDLA--DAPLAVARAMGADETV---NLARDPLAAYAADKGDFDVVFE 237

Query: 204 CVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
             G  +A +  L+ +  GGT+V   GM   P+ +  +A + K+L L+G
Sbjct: 238 ASGAPAALASALRVVRPGGTVVQV-GMLGGPVPLPLNALVAKELDLRG 284

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
          IE P      ND  V+  A     SD++ + G  P       + G+E VG V  VGS V 
Sbjct: 15 IEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERH-GMILGHEAVGVVEEVGSEVK 73

Query: 62 RLAPGDWVI 70
             PGD VI
Sbjct: 74 DFKPGDRVI 82

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 8  EVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGD 67
          + + ++V V+++A  I  +D+   +G  P     PAV G+EG G V +VGSAVT L PGD
Sbjct: 24 DPRPDEVLVRIVATGICHTDLVVRDGGLPTPL--PAVLGHEGAGVVEAVGSAVTGLKPGD 81

Query: 68 WVIPSPPSSGT 78
           V+ S  S G 
Sbjct: 82 HVVLSFASCGE 92

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 60/276 (21%), Positives = 103/276 (37%), Gaps = 56/276 (20%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSD------INRIEGVYPVRPKVPAVG--------GYE 48
            L   ++ E DV +++  + +N  D        +I   YP  P +   G         ++
Sbjct: 19  NLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESNDPRFK 78

Query: 49  GVGEV----YSVG-------SAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS 97
              EV    Y +G       S   R+ P +WV+P P                     K  
Sbjct: 79  PGDEVIVTSYDLGVSHHGGYSEYARV-PAEWVVPLP---------------------KGL 116

Query: 98  PMEYAATIIVNPLTA---LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 154
            ++ A  +     TA   +  LE+         ++  GAT  VG   + I    G   + 
Sbjct: 117 TLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVA 176

Query: 155 IIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVL 214
                 G  +A + LK LGA EV    +L+ +++K L       A+  + VGG + + +L
Sbjct: 177 ----STGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAV--DPVGGKTLAYLL 230

Query: 215 KFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
             L  GG++   G      +  +   FI + ++L G
Sbjct: 231 STLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLG 266

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 2  IELP-PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           E+P P     +D  V++ A  I  SD++   G  P   K   + G+E VGEV  VGS V
Sbjct: 15 EEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVP-GAKHGMILGHEFVGEVVEVGSDV 73

Query: 61 TRLAPGDWVI 70
           RL PGD V 
Sbjct: 74 KRLKPGDRVS 83

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 68/318 (21%), Positives = 119/318 (37%), Gaps = 74/318 (23%)

Query: 13  DVCVKMLAAPINPSDINRIEGVY-----------PVRPKVPAVGGYEGVGEVYSVGSAVT 61
           +V VK+ A  +  SD++  +G Y               K+P V G+E VGEV +VG    
Sbjct: 27  EVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDAA 86

Query: 62  RLAPGDWVI---------------------PSPPSSGTWQ-----SYVVKDQSVWHKVSK 95
            +  GD V+                         + G +Q      YV+   S +     
Sbjct: 87  DVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPG 146

Query: 96  DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIAR---HRGIHS 152
                 AAT+  + LTA   ++    L + + +V  GA   +G   + + +      I  
Sbjct: 147 GLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGG-LGLMALALLKALGPANIIV 205

Query: 153 INIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSAS 211
           ++I       +   E  K  GAD V   S  +  K +        +  + F  V  ++ +
Sbjct: 206 VDI------DEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDF--VNNSATA 257

Query: 212 KV-LKFLSQGGTMVT---YGGMSKKPITVSTSAFIFKDLSLKGFW---LQKWLSSEKATE 264
            +    L++GG +V    +GG      T+       + L+++G +   L+         E
Sbjct: 258 SLAFDILAKGGKLVLVGLFGG----EATLPLPLLPLRALTIQGSYVGSLE---------E 304

Query: 265 CRNMIDYLLCLAREGKLK 282
            R ++     LA+ GKLK
Sbjct: 305 LRELVA----LAKAGKLK 318

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
          +EL P      +V VK+ AA +  SD++ I G  P RP +P   G+E  G V  VG  VT
Sbjct: 26 VELDPP--GPGEVLVKIAAAGLCHSDLSVINGDRP-RP-LPMALGHEAAGVVVEVGEGVT 81

Query: 62 RLAPGDWVI 70
           L  GD V+
Sbjct: 82 DLEVGDHVV 90

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 11/69 (15%)

Query: 13 DVCVKMLAAPINPSDINRIEGVYPVRPKVPAVG-----GYEGVGEVYSVGSAVTRLAPGD 67
          D  VKML   I  +D++ ++G       VP V      G+EGVG V  VGSAVT    GD
Sbjct: 27 DAIVKMLKTTICGTDLHILKG------DVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGD 80

Query: 68 WVIPSPPSS 76
           V+ S  SS
Sbjct: 81 RVLISCISS 89

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 26/244 (10%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           +E  P +  EN+V V+  A  IN  D     G+YP  P +P+  G E  G V  VGS V 
Sbjct: 19  VEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVK 77

Query: 62  RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPM--------EYAATIIVNPLTAL 113
            +  GD V+ +  + G + S         H V  D           E AA   +  LT  
Sbjct: 78  HIKVGDRVVYAQSALGAYSSV--------HNVPADKAAILPDAISFEQAAASFLKGLTVY 129

Query: 114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG 173
            +L     +   +  + + A   VG    Q A+  G   I  +    GS +  ++ K  G
Sbjct: 130 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV----GSAQKAQRAKKAG 185

Query: 174 ADEV--FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK 231
           A +V  + E  + V+ VK +        + ++ VG ++    L  L + G MV++G  S 
Sbjct: 186 AWQVINYREENI-VERVKEITGGKKVRVV-YDSVGKDTWEASLDCLQRRGLMVSFGNAS- 242

Query: 232 KPIT 235
            P+T
Sbjct: 243 GPVT 246

Length = 327

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 18/79 (22%)

Query: 1  MIELPPVEVKENDVCVKMLAAPINPSDI----------NRIEGVYPVRPKVPAVGGYEGV 50
          + ++P  E   NDV +K+    I  +D+            I         VP V G+E V
Sbjct: 15 LTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTI--------PVPMVVGHEFV 66

Query: 51 GEVYSVGSAVTRLAPGDWV 69
          GEV  VGS VT    GD V
Sbjct: 67 GEVVEVGSEVTGFKVGDRV 85

Length = 341

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 47/213 (22%)

Query: 3   ELPPV-EVKENDVCVKMLAAPINPSDINRIEGVYPV----------RPKVPAVGGYEGVG 51
           E  PV E+   +V V ++AA +N +++    G  PV          R +   +GG +  G
Sbjct: 33  EDVPVPELGPGEVLVAVMAAGVNYNNVWAALG-EPVSTFAARQRRGRDEPYHIGGSDASG 91

Query: 52  EVYSVGSAVTRLAPGDWVIPSP------------------PSSGTW----------QSYV 83
            V++VG  V     GD V+                     PS   W          Q  +
Sbjct: 92  IVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFAL 151

Query: 84  VKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT--TLNSGDSIVQNGATSIVGQCI 141
           V+   +  K    S  E AA ++V   TA RML  +   T+  GD+++  GA+  +G   
Sbjct: 152 VQATQLMPKPKHLSWEEAAAYMLVGA-TAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMA 210

Query: 142 IQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA 174
           IQ+AR  G + + ++     S+E  E  + LGA
Sbjct: 211 IQLARAAGANPVAVV----SSEEKAEYCRALGA 239

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 75/354 (21%), Positives = 120/354 (33%), Gaps = 108/354 (30%)

Query: 6   PVEVKENDVCVKMLAAPINPSDIN--RIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRL 63
              +  +DV +K+    +  SD++  R E      P VP   G+E VG V +VGS VT+ 
Sbjct: 19  RRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVP---GHEIVGIVVAVGSKVTKF 75

Query: 64  APGDWV----------------------------------IPSPPSSGTWQSYVVKDQSV 89
             GD V                                       + G +  ++V D+  
Sbjct: 76  KVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERF 135

Query: 90  WHKVSKDSPMEYAAT-----IIV-NPLTALRMLEDFTTLNSGDSIVQNGATS-----IVG 138
             K+ +      AA      I V +PL                   +NG        +VG
Sbjct: 136 VFKIPEGLDSAAAAPLLCAGITVYSPL------------------KRNGVGPGKRVGVVG 177

Query: 139 QCI-------IQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE--VFTESQLEVKNVK 189
             I       ++ A+  G       R  +  ++A +    LGADE     + +   K   
Sbjct: 178 --IGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGADEFIATKDPEAMKKAAG 231

Query: 190 GLLANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSL 248
            L   +       + V  +      L  L  GGT+V   G  ++P+ V     IF   S+
Sbjct: 232 SLDLII-------DTVSASHDLDPYLSLLKPGGTLVLV-GAPEEPLPVPPFPLIFGRKSV 283

Query: 249 KGFWLQKWLS---SEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSK 299
            G       S     K T  + M+D     A E  +K  +E++P +    AL +
Sbjct: 284 AG-------SLIGGRKET--QEMLD----FAAEHGIKPWVEVIPMDGINEALER 324

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 6  PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAP 65
          PV  +  D  ++++A  +  SD+    GV P R   P   G+E VG V  VGS VT + P
Sbjct: 20 PVIEEPTDAVIRVVATCVCGSDLWPYRGVSPTRAPAPI--GHEFVGVVEEVGSEVTSVKP 77

Query: 66 GDWVI-PSPPSSGT 78
          GD+VI P   S GT
Sbjct: 78 GDFVIAPFAISDGT 91

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 76/291 (26%), Positives = 115/291 (39%), Gaps = 60/291 (20%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVY------PVRPKVPAVGGYEGVGEVY 54
           + E+P  E    +V +K+LA  I  +D++    +Y        R K P V G+E  GEV 
Sbjct: 13  LTEVPVPEPGPGEVLIKVLATSICGTDVH----IYNWDEWAQSRIKPPQVVGHEVAGEVV 68

Query: 55  SVGSAVTRLAPGDWV--------------------------IPSPPSSGTWQSY-VVKDQ 87
            +G  V  +  GD+V                          I    + G +  Y VV  Q
Sbjct: 69  GIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQ 128

Query: 88  SVWHKVSKDSPMEYAATIIVNPL-TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIAR 146
           ++W K  K  P EYA   I  PL  A+  +       SG S++  GA  I G   I +A+
Sbjct: 129 NIW-KNPKSIPPEYAT--IQEPLGNAVHTVLAGPI--SGKSVLVTGAGPI-GLMAIAVAK 182

Query: 147 HRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG 206
             G + + I+ D   ++   E  K +GA  V    + +V      L +     +     G
Sbjct: 183 ASGAYPV-IVSDP--NEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSG 239

Query: 207 GNSASKVLKFLSQGGTMVTYGG------MSKKPITVS-TSAFIFKDLSLKG 250
              A      L QG   VT GG      +    +T+  T+  IFK L++ G
Sbjct: 240 APKA------LEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYG 284

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 13 DVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPS 72
          D  VK+ AA I  SD++   G  P  P    V G+E VGEV  VG  V  L  GD V+  
Sbjct: 27 DAIVKVTAAAICGSDLHIYRGHIPSTP--GFVLGHEFVGEVVEVGPEVRTLKVGDRVVSP 84

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 51/226 (22%), Positives = 79/226 (34%), Gaps = 57/226 (25%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT- 61
           E+P    KE ++ +++ A  +  SD++ ++G  P  P  P V G+E  GEV  VG  V  
Sbjct: 17  EIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPFPP--PFVLGHEISGEVVEVGPNVEN 74

Query: 62  --RLAPGD-----WVIP---------------------------------------SPP- 74
              L+ GD     +++P                                         P 
Sbjct: 75  PYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPV 134

Query: 75  ---SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN 131
              S G    Y V   +    + +      +A +     TA   L+    +  G+++   
Sbjct: 135 YMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVI 194

Query: 132 GATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           G    VG   IQ+A+  G   I I  D    DE   K K LGA   
Sbjct: 195 GVGG-VGSSAIQLAKAFGASPI-IAVDV--RDEKLAKAKELGATHT 236

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 5  PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLA 64
           P      D  V++ A  I  SD++   G  P   K   + G+E +G V  VG  V  L 
Sbjct: 19 DPKIEDPTDAIVRVTATAICGSDLHLYHGYIP-GMKKGDILGHEFMGVVEEVGPEVRNLK 77

Query: 65 PGDWV-IPSPPSSGT 78
           GD V +P   + G 
Sbjct: 78 VGDRVVVPFTIACGE 92

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 65/295 (22%), Positives = 109/295 (36%), Gaps = 44/295 (14%)

Query: 7   VEVKE--------NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGS 58
           VE++E         +V +++ A+ +  SD++     +        + G+E  G V +VG 
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGP 71

Query: 59  AVTRLAPGDWVIP---------------------SPPSSGTWQS------YVVKDQSVWH 91
            VT    GD V+                      S  ++  W        Y++  +    
Sbjct: 72  GVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLI 131

Query: 92  KVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH 151
            +  D      A ++    TA   L     ++  D+++  GA   VG   + +AR  G  
Sbjct: 132 PLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGP-VGLGALMLARALGAE 189

Query: 152 SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA- 210
            + I  D   S E  E  K LGAD V    Q +V+ ++ L +      +   C G  +A 
Sbjct: 190 DV-IGVDP--SPERLELAKALGADFVINSGQDDVQEIRELTSGAG-ADVAIECSGNTAAR 245

Query: 211 SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFW-LQKWLSSEKATE 264
              L+ +   G +V  G   +  I VS +  I K  +L G W        E A  
Sbjct: 246 RLALEAVRPWGRLVLVGEGGELTIEVS-NDLIRKQRTLIGSWYFSVPDMEECAEF 299

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 45/206 (21%)

Query: 13  DVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWV--- 69
           DV +K++   I  +D+++I+    +    P V G+E VGEV  VGS V++   GD V   
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMS-NYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVG 94

Query: 70  -----------------------IPS--------PPSSGTWQSYVVKDQSVWHKVSKDSP 98
                                  I S         P+ G + S +V DQ    K+ +   
Sbjct: 95  VIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMA 154

Query: 99  MEYAATIIVNPLTALRMLEDFTTLNSG--DSIVQNGATSIVGQCIIQIARHRGIHSINII 156
            E AA ++   +T    L  F    SG    I+  G    VG   ++IA+  G H + +I
Sbjct: 155 PEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGG---VGHMGVKIAKAMG-HHVTVI 210

Query: 157 RDRAGSDEAKEK-LKGLGADEVFTES 181
              + SD+ +E+ L+ LGAD+    S
Sbjct: 211 ---SSSDKKREEALEHLGADDYLVSS 233

Length = 357

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 60/235 (25%), Positives = 88/235 (37%), Gaps = 35/235 (14%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYP--VRPKVPAVGGYEGVGEVYSVGSAV 60
           E+P  E K   V +++ A  +N S+I   +G  P    P+V    G E VGEV       
Sbjct: 19  EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVL---GIEAVGEVEEAPG-- 73

Query: 61  TRLAPGDWVI-------PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL 113
               PG  V         +    G++  Y +      + +  D      A +     TA 
Sbjct: 74  GTFTPGQRVATAMGGMGRTFD--GSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAW 131

Query: 114 RMLEDFTTLN--SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG 171
             L  F +L    GD+++  G TS VG   +++A+  G       R    S E    LK 
Sbjct: 132 GSL--FRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR----SPERAALLKE 185

Query: 172 LGADEVFTESQLEVKNVKGLLANLPEPALGFN----CVGGNSASKVLKFLSQGGT 222
           LGADEV  +          +   L     GF+     VG  +    L+ L  GG 
Sbjct: 186 LGADEVVIDDG-------AIAEQLRAAPGGFDKVLELVGTATLKDSLRHLRPGGI 233

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 45/215 (20%)

Query: 3   ELPPVEVKENDVCVKMLAAPIN----------PSDINRIEGVYPVRPKVPAVGGYEGVGE 52
            +P  E+   +V V ++AA +N          P         Y        + G +  G 
Sbjct: 29  VVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGKLDLPFHIIGSDASGV 88

Query: 53  VYSVGSAVTRLAPGDWVIPS-------PPSSGTWQSYVVKDQSVW-----------HKVS 94
           V+ VG  VTR   GD V+ S        P        +  +Q +W             + 
Sbjct: 89  VWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPMLSSEQRIWGYETNFGSFAEFALV 148

Query: 95  KDSPM---------EYAATIIVNPLTALRMLEDFT--TLNSGDSIVQNGATSIVGQCIIQ 143
           KD  +         E AA   +   TA R L  +    +  GD+++  GA   +G    Q
Sbjct: 149 KDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPAAVKPGDNVLIWGAAGGLGSYATQ 208

Query: 144 IARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEV 177
           +AR  G + + ++     S   K E  + LGA+ V
Sbjct: 209 LARAGGGNPVAVV-----SSPEKAEYCRSLGAEAV 238

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 5  PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLA 64
          PP   K  +V +K+LA  +  +D   + G  P     P + G+EG G V SVG  VT + 
Sbjct: 24 PP---KAGEVRIKILATGVCHTDAYTLSGADP-EGLFPVILGHEGAGIVESVGEGVTSVK 79

Query: 65 PGDWVIP 71
          PGD VIP
Sbjct: 80 PGDHVIP 86

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 71/269 (26%), Positives = 100/269 (37%), Gaps = 43/269 (15%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
            L   ++ E DV +K+  + +N  D   I G   V    P + G +  G V  V S   R
Sbjct: 18  TLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTV--VSSEDPR 75

Query: 63  LAPGDWVIPSPPSSG------TWQSYVVKDQSVWHKVSKD---------SPMEYAATIIV 107
              GD VI     +G          Y     S + +V  D         S  E A  +  
Sbjct: 76  FREGDEVI----VTGYGLGVSHDGGY-----SQYARVPADWLVPLPEGLSLRE-AMALGT 125

Query: 108 NPLTA----LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD 163
              TA    + +  +  T   G  ++  GAT  VG   + I    G   +       G  
Sbjct: 126 AGFTAALSVMALERNGLTPEDGP-VLVTGATGGVGSLAVAILSKLGYEVVAST----GKA 180

Query: 164 EAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTM 223
           E ++ LK LGA EV     L     K L       A+  + VGG++ + VL  L  GG +
Sbjct: 181 EEEDYLKELGASEVIDREDLS-PPGKPLEKERWAGAV--DTVGGHTLANVLAQLKYGGAV 237

Query: 224 VTYG--GMSKKPITVSTSAFIFKDLSLKG 250
              G  G    P TV    FI + +SL G
Sbjct: 238 AACGLAGGPDLPTTV--LPFILRGVSLLG 264

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 5  PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLA 64
          PP   ++ +V +K+L   I  +D++  +G    +   P + G+E  G V SVG  V  L 
Sbjct: 32 PP---QKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLK 88

Query: 65 PGDWVIP 71
           GD VIP
Sbjct: 89 AGDHVIP 95

Length = 381

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 65/283 (22%), Positives = 106/283 (37%), Gaps = 45/283 (15%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  E   + V V++ A  +  SD +  +G  P    +P V G+E  G V  VG  V+R
Sbjct: 17  EVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSR 75

Query: 63  LAPGDWV--------------------------IPSPPSSGTWQSYVVKDQSVWH--KVS 94
              GD V                           P     G++  YV   ++  +  ++ 
Sbjct: 76  WRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLP 135

Query: 95  KDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 154
            D     AA +     TA R L     +  G+ +  +G    VG   + IA   G   I 
Sbjct: 136 DDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGG-VGLSAVMIASALGARVIA 194

Query: 155 IIRDRAGSDEAKEKLKGLGADEVFTESQLE-----VKNVKGLLANLPEPALGFNCVGGNS 209
           +  D    D+  E  + LGA      S++E     V+++ G  A++   ALG      NS
Sbjct: 195 V--DI--DDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNS 250

Query: 210 ASKVLKFLSQGGTMVTYGGMSKKPITVS--TSAFIFKDLSLKG 250
               +  L + G  V  G    +   V+      + ++L + G
Sbjct: 251 ----VASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVG 289

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 65/265 (24%), Positives = 105/265 (39%), Gaps = 42/265 (15%)

Query: 48  EGVGEVYSVGSAVTRLAPGDWVIPSPPSSG--TWQSYVV----KDQSVWHKVSKDSPMEY 101
           EG G    V S      PGD +      SG   W+ Y +     +Q    ++  D P+ Y
Sbjct: 81  EGFGVSKVVDSDDPNFKPGDLI------SGITGWEEYSLIRSSDNQLRKIQLQDDIPLSY 134

Query: 102 AATIIVNP-LTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA 160
              ++     TA     +  +   GDS+  + A+  VGQ + Q+A+  G + +      A
Sbjct: 135 HLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVG----SA 190

Query: 161 GSDEAKEKLKG-LGADEVFT---ESQLEVKNVKGLLANLPEPA-LGFNCVGGNSASKVLK 215
           GS +  + LK  LG DE F    E  L+      L    PE   + F+ VGG+     L 
Sbjct: 191 GSSQKVDLLKNKLGFDEAFNYKEEPDLDA----ALKRYFPEGIDIYFDNVGGDMLDAALL 246

Query: 216 FLSQGGTMVTYGGMSKKPITVSTS-----AFIFKDLSLKGFWLQKWLSSEKATECRNMID 270
            +   G +   G +S   ++ S         I K + ++GF     L S+        ++
Sbjct: 247 NMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGF-----LQSDYLHLFPQFLE 301

Query: 271 YLLCLAREGKLKY--DM----ELVP 289
            +    ++GK+ Y  DM    E  P
Sbjct: 302 NVSRYYKQGKIVYIEDMSEGLESAP 326

Length = 348

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEG------VYPVRPKVPAVGGYEGVGEVYSV 56
           ++P   +K +++ +++ A  I  SDI+  E       +YP   + P V G+E  G V   
Sbjct: 43  DVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKT 102

Query: 57  GSAVTRLAPGDWV 69
           G  V     GD V
Sbjct: 103 GKNVKNFEKGDPV 115

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 32 EGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP 71
          EGV+PV      + G+EG G V +VG  VT +  GD VIP
Sbjct: 52 EGVFPV------ILGHEGAGIVEAVGEGVTSVKVGDHVIP 85

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
          +E+ P +  E  V +K+L   +  +D+   E      P  P + G+E  G V SVG  VT
Sbjct: 20 VEVAPPQAME--VRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVT 76

Query: 62 RLAPGDWVIP 71
           L PGD V+P
Sbjct: 77 DLKPGDHVLP 86

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 4   LPPVEVKENDVCVKMLAAPINPSDINRIE----GVYPVRPKVPAVGGYEGVGEVYSVGSA 59
           LPP+    +DV V+M A  I  SD++ ++      + V  K P V G+E  G +  VGS 
Sbjct: 36  LPPL--GPHDVRVRMKAVGICGSDVHYLKTMRCADFVV--KEPMVIGHECAGIIEEVGSE 91

Query: 60  VTRLAPGDWVIPSP 73
           V  L  GD V   P
Sbjct: 92  VKHLVVGDRVALEP 105

Length = 364

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	100.0
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	100.0
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	100.0
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	100.0
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	100.0
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	100.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	100.0
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	100.0
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.97
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.79
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.75
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.51
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.4
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.39
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.66
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.37
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.27
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	98.18
PLN02494	477	adenosylhomocysteinase	98.17
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.15
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.13
PRK12742	237	oxidoreductase; Provisional	98.07
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.04
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.98
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.97
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.94
PRK08324	681	short chain dehydrogenase; Validated	97.91
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.88
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.84
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.81
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.81
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.8
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.75
PRK05693	274	short chain dehydrogenase; Provisional	97.7
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.66
PRK06182	273	short chain dehydrogenase; Validated	97.64
PRK07109	334	short chain dehydrogenase; Provisional	97.63
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.61
PRK05993	277	short chain dehydrogenase; Provisional	97.59
PLN03209	576	translocon at the inner envelope of chloroplast su	97.58
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.56
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.55
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.54
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.54
PRK06139	330	short chain dehydrogenase; Provisional	97.49
PRK08339	263	short chain dehydrogenase; Provisional	97.46
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.46
PRK12939	250	short chain dehydrogenase; Provisional	97.45
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.44
PRK07060	245	short chain dehydrogenase; Provisional	97.42
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.4
PRK07832	272	short chain dehydrogenase; Provisional	97.4
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.39
PRK06196	315	oxidoreductase; Provisional	97.39
PRK08265	261	short chain dehydrogenase; Provisional	97.39
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	97.36
PRK06128	300	oxidoreductase; Provisional	97.35
PRK07806	248	short chain dehydrogenase; Provisional	97.35
PRK07062	265	short chain dehydrogenase; Provisional	97.34
PRK07326	237	short chain dehydrogenase; Provisional	97.33
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.3
PRK05872	296	short chain dehydrogenase; Provisional	97.27
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
PRK12829	264	short chain dehydrogenase; Provisional	97.24
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.23
PRK08267	260	short chain dehydrogenase; Provisional	97.21
PRK06181	263	short chain dehydrogenase; Provisional	97.21
PRK05866	293	short chain dehydrogenase; Provisional	97.2
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.2
PRK09072	263	short chain dehydrogenase; Provisional	97.19
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.18
PRK06198	260	short chain dehydrogenase; Provisional	97.18
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.16
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.16
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.16
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.16
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.15
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.15
PRK09291	257	short chain dehydrogenase; Provisional	97.15
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.14
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.11
PRK12828	239	short chain dehydrogenase; Provisional	97.1
PRK06057	255	short chain dehydrogenase; Provisional	97.09
PRK06914	280	short chain dehydrogenase; Provisional	97.08
PRK06125	259	short chain dehydrogenase; Provisional	97.07
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.06
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.06
PRK06701	290	short chain dehydrogenase; Provisional	97.05
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	97.05
PRK07478	254	short chain dehydrogenase; Provisional	97.04
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.04
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.04
PRK09242	257	tropinone reductase; Provisional	97.03
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.03
PRK06484	520	short chain dehydrogenase; Validated	97.03
PRK07831	262	short chain dehydrogenase; Provisional	97.03
PRK12367	245	short chain dehydrogenase; Provisional	97.02
PRK07814	263	short chain dehydrogenase; Provisional	97.01
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	97.0
PRK06949	258	short chain dehydrogenase; Provisional	97.0
PRK12937	245	short chain dehydrogenase; Provisional	97.0
PRK07904	253	short chain dehydrogenase; Provisional	96.99
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.98
PRK05854	313	short chain dehydrogenase; Provisional	96.98
PRK08219	227	short chain dehydrogenase; Provisional	96.98
PRK06484	520	short chain dehydrogenase; Validated	96.98
PRK06194	287	hypothetical protein; Provisional	96.98
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.97
PRK05867	253	short chain dehydrogenase; Provisional	96.96
PRK12747	252	short chain dehydrogenase; Provisional	96.96
PRK07825	273	short chain dehydrogenase; Provisional	96.95
PRK07985	294	oxidoreductase; Provisional	96.94
PRK05876	275	short chain dehydrogenase; Provisional	96.93
PRK06172	253	short chain dehydrogenase; Provisional	96.93
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.91
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	96.9
KOG0725	270	consensus Reductases with broad range of substrate	96.9
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.9
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.89
PRK07576	264	short chain dehydrogenase; Provisional	96.88
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	96.88
PRK07677	252	short chain dehydrogenase; Provisional	96.87
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.87
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.86
PRK08862	227	short chain dehydrogenase; Provisional	96.86
CHL00194	317	ycf39 Ycf39; Provisional	96.86
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.86
PRK06483	236	dihydromonapterin reductase; Provisional	96.86
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.86
PRK08263	275	short chain dehydrogenase; Provisional	96.85
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	96.84
PLN02780	320	ketoreductase/ oxidoreductase	96.84
PRK07890	258	short chain dehydrogenase; Provisional	96.83
PRK06720	169	hypothetical protein; Provisional	96.83
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.83
PRK08264	238	short chain dehydrogenase; Validated	96.82
PRK08589	272	short chain dehydrogenase; Validated	96.82
PRK06197	306	short chain dehydrogenase; Provisional	96.82
PRK08628	258	short chain dehydrogenase; Provisional	96.82
PRK06138	252	short chain dehydrogenase; Provisional	96.81
PRK07774	250	short chain dehydrogenase; Provisional	96.81
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.81
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.8
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.8
PRK07791	286	short chain dehydrogenase; Provisional	96.8
PRK06398	258	aldose dehydrogenase; Validated	96.79
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.79
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.79
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.78
PRK08177	225	short chain dehydrogenase; Provisional	96.78
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.77
PRK07063	260	short chain dehydrogenase; Provisional	96.77
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.77
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.76
PRK06940	275	short chain dehydrogenase; Provisional	96.76
PRK07035	252	short chain dehydrogenase; Provisional	96.75
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.74
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.73
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.73
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.72
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.72
PRK08643	256	acetoin reductase; Validated	96.71
PRK05717	255	oxidoreductase; Validated	96.69
PRK06500	249	short chain dehydrogenase; Provisional	96.69
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	96.69
PRK07024	257	short chain dehydrogenase; Provisional	96.69
PRK06180	277	short chain dehydrogenase; Provisional	96.68
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	96.68
PRK06841	255	short chain dehydrogenase; Provisional	96.67
PRK08703	239	short chain dehydrogenase; Provisional	96.67
PRK06179	270	short chain dehydrogenase; Provisional	96.66
PRK08017	256	oxidoreductase; Provisional	96.66
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.66
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.66
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.65
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.65
PRK07454	241	short chain dehydrogenase; Provisional	96.65
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.65
PRK12746	254	short chain dehydrogenase; Provisional	96.64
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.64
PLN02253	280	xanthoxin dehydrogenase	96.64
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.64
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.64
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.63
PRK06114	254	short chain dehydrogenase; Provisional	96.62
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.6
PRK10538	248	malonic semialdehyde reductase; Provisional	96.6
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.59
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.58
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.58
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.56
PRK08303	305	short chain dehydrogenase; Provisional	96.56
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.54
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.54
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.53
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.51
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.51
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.51
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.51
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	96.51
PRK06101	240	short chain dehydrogenase; Provisional	96.5
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.49
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.49
PRK05875	276	short chain dehydrogenase; Provisional	96.47
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.47
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.47
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.46
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.45
PRK07775	274	short chain dehydrogenase; Provisional	96.44
PRK09186	256	flagellin modification protein A; Provisional	96.44
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.42
PRK08278	273	short chain dehydrogenase; Provisional	96.41
PRK12743	256	oxidoreductase; Provisional	96.41
PRK07856	252	short chain dehydrogenase; Provisional	96.4
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.4
PRK08226	263	short chain dehydrogenase; Provisional	96.4
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.39
PRK05650	270	short chain dehydrogenase; Provisional	96.39
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.38
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.37
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.36
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.36
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.36
PRK06482	276	short chain dehydrogenase; Provisional	96.35
PRK07074	257	short chain dehydrogenase; Provisional	96.33
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.32
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.31
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	96.29
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.29
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.29
PRK07069	251	short chain dehydrogenase; Validated	96.27
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.26
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.25
PRK07067	257	sorbitol dehydrogenase; Provisional	96.24
PRK09134	258	short chain dehydrogenase; Provisional	96.24
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.22
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.21
PRK12744	257	short chain dehydrogenase; Provisional	96.21
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.17
PRK09135	249	pteridine reductase; Provisional	96.16
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.15
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.15
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.15
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.12
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.12
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.11
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.11
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.1
PLN02240	352	UDP-glucose 4-epimerase	96.1
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.1
PRK07578	199	short chain dehydrogenase; Provisional	96.1
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.09
PRK08251	248	short chain dehydrogenase; Provisional	96.08
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.08
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.08
PRK06523	260	short chain dehydrogenase; Provisional	96.06
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.03
PRK05599	246	hypothetical protein; Provisional	96.02
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	96.01
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.0
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.97
PRK06123	248	short chain dehydrogenase; Provisional	95.97
PRK07041	230	short chain dehydrogenase; Provisional	95.96
KOG1208	314	consensus Dehydrogenases with different specificit	95.96
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.95
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.94
PRK06947	248	glucose-1-dehydrogenase; Provisional	95.94
PRK05855	582	short chain dehydrogenase; Validated	95.93
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.92
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.92
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.91
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.91
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.89
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	95.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.87
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.87
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.86
PRK07201	657	short chain dehydrogenase; Provisional	95.85
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.85
PRK12827	249	short chain dehydrogenase; Provisional	95.85
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	95.85
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.83
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.82
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	95.82
PRK07102	243	short chain dehydrogenase; Provisional	95.82
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.81
PRK08328	231	hypothetical protein; Provisional	95.8
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.8
PRK06953	222	short chain dehydrogenase; Provisional	95.8
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	95.78
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.77
COG4122	219	Predicted O-methyltransferase [General function pr	95.77
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	95.77
PRK08309	177	short chain dehydrogenase; Provisional	95.75
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.75
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.74
PRK05884	223	short chain dehydrogenase; Provisional	95.74
PLN02928	347	oxidoreductase family protein	95.74
PLN00016	378	RNA-binding protein; Provisional	95.72
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	95.71
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.71
PLN00198	338	anthocyanidin reductase; Provisional	95.69
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.69
PLN00203	519	glutamyl-tRNA reductase	95.68
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.68
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.66
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.66
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.62
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.61
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.6
PLN02653	340	GDP-mannose 4,6-dehydratase	95.59
TIGR00438	188	rrmJ cell division protein FtsJ.	95.58
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.58
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	95.58
PRK12824	245	acetoacetyl-CoA reductase; Provisional	95.57
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.57
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.56
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.52
PRK08223	287	hypothetical protein; Validated	95.52
PRK07023	243	short chain dehydrogenase; Provisional	95.51
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.51
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.51
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	95.5
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.5
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.49
PLN02650	351	dihydroflavonol-4-reductase	95.48
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.48
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	95.47
PRK10675	338	UDP-galactose-4-epimerase; Provisional	95.46
PLN02686	367	cinnamoyl-CoA reductase	95.45
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.42
PRK07577	234	short chain dehydrogenase; Provisional	95.4
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.4
COG2910	211	Putative NADH-flavin reductase [General function p	95.4
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	95.39
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.39
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.36
PLN02214	342	cinnamoyl-CoA reductase	95.35
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	95.35
PRK08618	325	ornithine cyclodeaminase; Validated	95.34
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.33
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.33
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	95.32
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.27
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.26
PRK04148	134	hypothetical protein; Provisional	95.26
COG1028	251	FabG Dehydrogenases with different specificities (	95.25
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.25
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	95.24
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	95.24
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.21
PLN02589	247	caffeoyl-CoA O-methyltransferase	95.2
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.17
PRK10637	457	cysG siroheme synthase; Provisional	95.13
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.12
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.12
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.12
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.08
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.08
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.05
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.04
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.02
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	94.97
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.96
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	94.96
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.95
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.95
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.91
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	94.9
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.89
PLN02583	297	cinnamoyl-CoA reductase	94.89
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	94.89
PLN02427	386	UDP-apiose/xylose synthase	94.88
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.88
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.85
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.84
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.82
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.82
PLN02476	278	O-methyltransferase	94.81
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.81
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	94.8
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.78

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.3e-56  Score=375.67  Aligned_cols=290  Identities=28%  Similarity=0.364  Sum_probs=262.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEee-CCCC----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP-SPPS----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~-~~~~----   75 (314)
                      |+|++.|+|+++||+|+|.|+|+|++|++.+.|.++.. .+|++||||.+|+|+++|++|++|++||||.. +...    
T Consensus        18 i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~   96 (339)
T COG1064          18 IEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGE   96 (339)
T ss_pred             EEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCC
Confidence            47899999999999999999999999999999999876 59999999999999999999999999999988 4321    


Q ss_pred             ----------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           76 ----------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        76 ----------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                            +|+|+||+++++.+++++|+++++..||.+.|++.|.|++|++ .+++||++|+|.|+
T Consensus        97 C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~-~~~~pG~~V~I~G~  175 (339)
T COG1064          97 CEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKK-ANVKPGKWVAVVGA  175 (339)
T ss_pred             CccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhh-cCCCCCCEEEEECC
Confidence                                  9999999999999999999999999999999999999999988 99999999999999


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASK  212 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~  212 (314)
                       |++|++++|+|+.+|++|+++.+    ++++.+.+++||++++++..+. ..+.+++      .+|+++|+++...++.
T Consensus       176 -GGlGh~avQ~Aka~ga~Via~~~----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~------~~d~ii~tv~~~~~~~  244 (339)
T COG1064         176 -GGLGHMAVQYAKAMGAEVIAITR----SEEKLELAKKLGADHVINSSDSDALEAVKE------IADAIIDTVGPATLEP  244 (339)
T ss_pred             -cHHHHHHHHHHHHcCCeEEEEeC----ChHHHHHHHHhCCcEEEEcCCchhhHHhHh------hCcEEEECCChhhHHH
Confidence             79999999999999999999995    7899999999999999997743 3344544      2999999999556699


Q ss_pred             HHHhcccCCEEEEEcCCC-CCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeecc
Q 021311          213 VLKFLSQGGTMVTYGGMS-KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPF  290 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~  290 (314)
                      ++++|+++|+++++|... ....+++...++.+++++.|+..++.          .++++++++..+|+++|.+ +.+++
T Consensus       245 ~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~----------~d~~e~l~f~~~g~Ikp~i~e~~~l  314 (339)
T COG1064         245 SLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTR----------ADLEEALDFAAEGKIKPEILETIPL  314 (339)
T ss_pred             HHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCH----------HHHHHHHHHHHhCCceeeEEeeECH
Confidence            999999999999999774 44455777878889999999987653          6689999999999999999 59999


Q ss_pred             ccHHHHHHHHhccCCCCCceEeeC
Q 021311          291 NNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       291 ~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++||+.|++++..| ++||++
T Consensus       315 ~~in~A~~~m~~g~v~g-R~Vi~~  337 (339)
T COG1064         315 DEINEAYERMEKGKVRG-RAVIDM  337 (339)
T ss_pred             HHHHHHHHHHHcCCeee-EEEecC
Confidence            99999999999999998 999874

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.7e-53  Score=365.90  Aligned_cols=303  Identities=29%  Similarity=0.384  Sum_probs=265.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-C-CCCc
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-P-SSGT   78 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-~-~~g~   78 (314)
                      ++|+|.|+|+++||+|||.++++|+.|.....|..+....+|+++|.|++|+|+++|++|+.|++||+|+.+. . ..|+
T Consensus        17 ~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~   96 (326)
T COG0604          17 VVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGG   96 (326)
T ss_pred             EEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCc
Confidence            3688999999999999999999999999999997433336899999999999999999999999999999994 2 1699


Q ss_pred             ccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311           79 WQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      |+||..+|++.++++|+++|+++||+++++++|||+++....++++|++|||+||+|++|.+++|+|+.+|+++++++. 
T Consensus        97 ~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~-  175 (326)
T COG0604          97 YAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS-  175 (326)
T ss_pred             ceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec-
Confidence            9999999999999999999999999999999999999999899999999999999999999999999999987777773 


Q ss_pred             CCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC-CCCccc
Q 021311          159 RAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS-KKPITV  236 (314)
Q Consensus       159 ~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~  236 (314)
                         ++++.++++++|++++++|++. +.+++++++++++ +|+|||++|++.+..++++|+++|+++.+|..+ .....+
T Consensus       176 ---s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g-vDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g~~~~~~  251 (326)
T COG0604         176 ---SSEKLELLKELGADHVINYREEDFVEQVRELTGGKG-VDVVLDTVGGDTFAASLAALAPGGRLVSIGALSGGPPVPL  251 (326)
T ss_pred             ---CHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCC-ceEEEECCCHHHHHHHHHHhccCCEEEEEecCCCCCcccc
Confidence               6777779999999999999887 5588999999987 999999999999999999999999999999877 445556


Q ss_pred             ccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce-eeccccHH--HHHHHHhccCCCCCceEee
Q 021311          237 STSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME-LVPFNNFQ--TALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~--~a~~~~~~~~~~~~k~vi~  313 (314)
                      +...++.+.++..+......    +++..++.++++.+++++|++++.++ .||+++..  .++..+. ++..| |+|++
T Consensus       252 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~-~~~~G-Kvvl~  325 (326)
T COG0604         252 NLLPLLGKRLTLRGVTLGSR----DPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLE-RRTTG-KVVLK  325 (326)
T ss_pred             CHHHHhhccEEEEEecceec----chHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHHHHHcc-cCCcc-eEEEe
Confidence            66667778888888765432    23666788899999999999999976 79999954  4444444 47777 99997


Q ss_pred             C
Q 021311          314 F  314 (314)
Q Consensus       314 ~  314 (314)
                      +
T Consensus       326 ~  326 (326)
T COG0604         326 V  326 (326)
T ss_pred             C
Confidence            5

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.6e-51  Score=334.58  Aligned_cols=295  Identities=22%  Similarity=0.247  Sum_probs=258.1

Q ss_pred             CccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCCCC--CCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC--
Q 021311            1 MIELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRP--KVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS--   75 (314)
Q Consensus         1 i~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~--~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~--   75 (314)
                      |++.|+|++ .|+||+|++.++|||++|.|.+.......+  +.|+++|||.+|+|+++|++|+++++||||+.-+..  
T Consensus        18 i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~~c   97 (354)
T KOG0024|consen   18 IEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGLPC   97 (354)
T ss_pred             EeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEecCCCcc
Confidence            467888986 999999999999999999999987654432  579999999999999999999999999999876531  


Q ss_pred             -------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEE
Q 021311           76 -------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQ  130 (314)
Q Consensus        76 -------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI  130 (314)
                                               +|++++|++.+++.+++||++++++++|++. +++.+||+.++ +++++|++|||
T Consensus        98 ~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLsV~~HAcr~-~~vk~Gs~vLV  175 (354)
T KOG0024|consen   98 RDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PLSVGVHACRR-AGVKKGSKVLV  175 (354)
T ss_pred             ccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhccccc-chhhhhhhhhh-cCcccCCeEEE
Confidence                                     8999999999999999999999999999988 79999999977 99999999999


Q ss_pred             cCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-H----HHHHHHhcCCCCCcEEEecC
Q 021311          131 NGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-V----KNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       131 ~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~----~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|| |++|+++...|+.+|+..+++++.   .+.|++.++++|++.+.+..... .    +.+++..+... +|+.|||+
T Consensus       176 ~GA-GPIGl~t~l~Aka~GA~~VVi~d~---~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~-~d~~~dCs  250 (354)
T KOG0024|consen  176 LGA-GPIGLLTGLVAKAMGASDVVITDL---VANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQ-PDVTFDCS  250 (354)
T ss_pred             ECC-cHHHHHHHHHHHHcCCCcEEEeec---CHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccC-CCeEEEcc
Confidence            999 999999999999999999988886   89999999999999988765432 2    33444444343 99999999


Q ss_pred             CCccH-HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc
Q 021311          206 GGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD  284 (314)
Q Consensus       206 g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  284 (314)
                      |.+.. +.++..++.+|++++.| +.....+++...+..+++++.|+..+..          .++..+++++.+|++.+.
T Consensus       251 G~~~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~v~~kE~~~~g~fry~~----------~~y~~ai~li~sGki~~k  319 (354)
T KOG0024|consen  251 GAEVTIRAAIKATRSGGTVVLVG-MGAEEIQFPIIDVALKEVDLRGSFRYCN----------GDYPTAIELVSSGKIDVK  319 (354)
T ss_pred             CchHHHHHHHHHhccCCEEEEec-cCCCccccChhhhhhheeeeeeeeeecc----------ccHHHHHHHHHcCCcCch
Confidence            99765 88999999999988887 5566788899999999999999876543          467899999999999865


Q ss_pred             ---ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          285 ---MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       285 ---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                         ++.|+++++.+||+.+.+++....|++|.
T Consensus       320 ~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~  351 (354)
T KOG0024|consen  320 PLITHRYKFDDADEAFETLQHGEEGVIKVIIT  351 (354)
T ss_pred             hheecccccchHHHHHHHHHhCcCCceEEEEe
Confidence               68999999999999999999877899986

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2e-50  Score=316.32  Aligned_cols=303  Identities=23%  Similarity=0.293  Sum_probs=273.8

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCccc
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      +++.|.|+|+|+|+.||-.|+|+|..|..+..|.+. .+++|++||.|.+|+|+.+|++|+++++||+|+.+.+ .|.|+
T Consensus        25 ~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~-~g~ya  102 (336)
T KOG1197|consen   25 LEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNP-FGAYA  102 (336)
T ss_pred             EeeecCCCCCCCceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEecCCccccccccEEEEecc-chhhh
Confidence            367899999999999999999999999999999985 3478999999999999999999999999999999885 79999


Q ss_pred             ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311           81 SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      ++..+|...++++|+.+++..||++.+.++|||..+++.-+++||++||++.|+|++|+++.|+++..|+++|.++    
T Consensus       103 ee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~a----  178 (336)
T KOG1197|consen  103 EEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATA----  178 (336)
T ss_pred             eeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEe----
Confidence            9999999999999999999999999999999999999988999999999999999999999999999999999999    


Q ss_pred             CcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccc
Q 021311          161 GSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS  239 (314)
Q Consensus       161 ~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  239 (314)
                      ++.++++.+++.|++|.++++.++ .+++.++++++| +|+++|++|.+.+...+.+|++.|.+|.+|+.++...+++..
T Consensus       179 sTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKG-Vd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~  257 (336)
T KOG1197|consen  179 STAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKG-VDAVYDSVGKDTFAKSLAALKPMGKMVSFGNASGLIDPIPLN  257 (336)
T ss_pred             ccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCC-ceeeeccccchhhHHHHHHhccCceEEEeccccCCCCCeehh
Confidence            478999999999999999998765 588999999988 999999999999999999999999999999877765555555


Q ss_pred             cceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce-eeccccHHHHHHHHhccCCCCCceEee
Q 021311          240 AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME-LVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .+..+.+++....+..+.  ..+..+.....+++.++.+|.+++.++ .|||+++.+|+.++++++..| |+++-
T Consensus       258 ~ls~k~l~lvrpsl~gYi--~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vadA~~diesrktvG-kvlLl  329 (336)
T KOG1197|consen  258 QLSPKALQLVRPSLLGYI--DGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVG-KVLLL  329 (336)
T ss_pred             hcChhhhhhccHhhhccc--CCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccc-eEEEe
Confidence            565666766555443332  346677788999999999999999985 799999999999999999999 99874

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-49  Score=322.41  Aligned_cols=292  Identities=26%  Similarity=0.301  Sum_probs=256.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      .+++.|+|+++||+|+++|+|||++|++.+.+.++. ..+|.++|||.+|+|+++|++|++|++||+|-+=..       
T Consensus        27 ~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~C  105 (360)
T KOG0023|consen   27 FSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSC  105 (360)
T ss_pred             eEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEECCCcccccccCeeeeeEEeccccCc
Confidence            567899999999999999999999999999999988 689999999999999999999999999999954210       


Q ss_pred             ---------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCE
Q 021311           75 ---------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDS  127 (314)
Q Consensus        75 ---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  127 (314)
                                                 ++|+|++|+++++..++++|++++++.||.+.++..|+|.++.+ .++.||++
T Consensus       106 E~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~-~g~~pG~~  184 (360)
T KOG0023|consen  106 EYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKR-SGLGPGKW  184 (360)
T ss_pred             cccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHH-cCCCCCcE
Confidence                                       06779999999999999999999999999999999999999987 88999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC-hh-hHHHHHHHhcCCCCCcEEEecC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES-QL-EVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~-~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +-|.|+ |++|.+++|+|+++|.+|+++.+.   +..+.+.++.||++..++.. +. ..+.+++.+++  .+|-+.+. 
T Consensus       185 vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~---~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg--~~~~v~~~-  257 (360)
T KOG0023|consen  185 VGIVGL-GGLGHMAVQYAKAMGMRVTVISTS---SKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDG--GIDTVSNL-  257 (360)
T ss_pred             EEEecC-cccchHHHHHHHHhCcEEEEEeCC---chhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcC--cceeeeec-
Confidence            999999 559999999999999999999863   44666777889999988876 33 44677776665  46766665 


Q ss_pred             CCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc
Q 021311          206 GGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM  285 (314)
Q Consensus       206 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  285 (314)
                      ....+..++.+|+++|++|++|.+.. +..++...+..+.+++.|+..+..          ...++++++..++.+++++
T Consensus       258 a~~~~~~~~~~lk~~Gt~V~vg~p~~-~~~~~~~~lil~~~~I~GS~vG~~----------ket~E~Ldf~a~~~ik~~I  326 (360)
T KOG0023|consen  258 AEHALEPLLGLLKVNGTLVLVGLPEK-PLKLDTFPLILGRKSIKGSIVGSR----------KETQEALDFVARGLIKSPI  326 (360)
T ss_pred             cccchHHHHHHhhcCCEEEEEeCcCC-cccccchhhhcccEEEEeeccccH----------HHHHHHHHHHHcCCCcCce
Confidence            44556899999999999999996655 888888888889999999987653          5678999999999999999


Q ss_pred             eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          286 ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       286 ~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ...+++++++||++|++++... +.|+++
T Consensus       327 E~v~~~~v~~a~erm~kgdV~y-RfVvD~  354 (360)
T KOG0023|consen  327 ELVKLSEVNEAYERMEKGDVRY-RFVVDV  354 (360)
T ss_pred             EEEehhHHHHHHHHHHhcCeeE-EEEEEc
Confidence            9999999999999999999988 988874

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=3.9e-48  Score=308.78  Aligned_cols=313  Identities=54%  Similarity=0.861  Sum_probs=280.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCccc
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      +++++.|+.+.++|+||..++.|||+|+..+.|.||.+|.+|.+-|+|++|.|+.+|+.+.+|++||+|+....+.|+|+
T Consensus        37 l~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a~lGtW~  116 (354)
T KOG0025|consen   37 LKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSANLGTWR  116 (354)
T ss_pred             eecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCCCCccce
Confidence            35778899888889999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311           81 SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      +|.+.+++.++++++.++++.||++.++++|||.+|...-++.+|++|+-.||++++|++.+|+|+++|.+-+.++|.+.
T Consensus       117 t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~  196 (354)
T KOG0025|consen  117 TEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRP  196 (354)
T ss_pred             eeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          161 GSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       161 ~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ..++-.+.++++||++++...+..-...+..-...+++.+.|||+|+.......+.|..||.++.+|+++..+.+.+...
T Consensus       197 ~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGksa~~iar~L~~GgtmvTYGGMSkqPv~~~ts~  276 (354)
T KOG0025|consen  197 NIEELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKSATEIARYLERGGTMVTYGGMSKQPVTVPTSL  276 (354)
T ss_pred             cHHHHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchhHHHHHHHHhcCceEEEecCccCCCcccccch
Confidence            78888889999999999976553322333332333359999999999999999999999999999999999999999999


Q ss_pred             ceecceEEEEEechhhcccc-CHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEee
Q 021311          241 FIFKDLSLKGFWLQKWLSSE-KATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      +..+++++.|+|+..|.... .++...+.++++.+++..|+++.+. ...+|++.+.|++..........|-+|.
T Consensus       277 lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~  351 (354)
T KOG0025|consen  277 LIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIV  351 (354)
T ss_pred             heeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEE
Confidence            99999999999999997643 3777889999999999999999875 5799999999998887765543365554

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1e-48  Score=321.06  Aligned_cols=296  Identities=26%  Similarity=0.332  Sum_probs=265.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      |+|++.++|+++||+||+.++|+|++|....+|..|.  .+|.++|||.+|+|+++|++|++++|||+|+..+..     
T Consensus        17 i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C   94 (366)
T COG1062          17 IEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQC   94 (366)
T ss_pred             EEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCccccCCCCEEEEcccCCCCCC
Confidence            5789999999999999999999999999999999887  399999999999999999999999999999987641     


Q ss_pred             ------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           76 ------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        76 ------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                                .++|++|.++++.+++++++..+++.++++.+...|.+
T Consensus        95 ~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~  174 (366)
T COG1062          95 KFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGI  174 (366)
T ss_pred             chhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccCh
Confidence                                                      45999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh--hHHHHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL--EVKNVKGL  191 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~~~~i~~~  191 (314)
                      .+..+.+++++|+++.|.|. |++|++++|-|+..|+..|+.++.   .+++++++++||+++++|..+.  -.+.+.++
T Consensus       175 Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA~~agA~~IiAvD~---~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~  250 (366)
T COG1062         175 GAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGAKAAGAGRIIAVDI---NPEKLELAKKFGATHFVNPKEVDDVVEAIVEL  250 (366)
T ss_pred             HHhhhcccCCCCCeEEEEec-cHhHHHHHHHHHHcCCceEEEEeC---CHHHHHHHHhcCCceeecchhhhhHHHHHHHh
Confidence            99999999999999999999 999999999999999999988886   8999999999999999999876  34678888


Q ss_pred             hcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCC-CCCcccccccceecceEEEEEechhhccccCHHHHHHHH
Q 021311          192 LANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMS-KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMI  269 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (314)
                      |++  ++|.+|||+|+.. +..++++..++|+.+.+|... +..++.++..++.. .++.|++++....       +.++
T Consensus       251 T~g--G~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p-------~~di  320 (366)
T COG1062         251 TDG--GADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARP-------RSDI  320 (366)
T ss_pred             cCC--CCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCcc-------ccch
Confidence            887  5999999999955 589999999999999999654 44567777777766 9999998875422       3668


Q ss_pred             HHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          270 DYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       270 ~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..++++..+|++.+.   ++.++|+|++|||+.|.+++..  |.||+|
T Consensus       321 P~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I--R~Vi~~  366 (366)
T COG1062         321 PRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI--RSVIRF  366 (366)
T ss_pred             hHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee--eEEecC
Confidence            899999999999975   6799999999999999998875  777764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=2.3e-46  Score=330.99  Aligned_cols=294  Identities=23%  Similarity=0.304  Sum_probs=250.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|+|+++||+|||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|++++++++||+|++...       
T Consensus        24 ~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~  101 (371)
T cd08281          24 EEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCR  101 (371)
T ss_pred             EEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCCCc
Confidence            578889999999999999999999999999887643  46899999999999999999999999999987321       


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|+||++++++.++++|+++++++++.++++++|||+
T Consensus       102 ~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~  181 (371)
T cd08281         102 PCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVG  181 (371)
T ss_pred             cccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEECCCCCChHHhhhhcchHHHHHH
Confidence                                                    0268999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHh
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLL  192 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~  192 (314)
                      ++.+.+++++|++|||.|+ |++|++++|+|+..|++ ++++.    .++++++.++++|+++++++.+. ..+.+++++
T Consensus       182 ~~~~~~~i~~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~----~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~  256 (371)
T cd08281         182 AVVNTAGVRPGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVD----LNEDKLALARELGATATVNAGDPNAVEQVRELT  256 (371)
T ss_pred             HHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEc----CCHHHHHHHHHcCCceEeCCCchhHHHHHHHHh
Confidence            9887789999999999997 99999999999999995 66555    37888999999999999988764 346788777


Q ss_pred             cCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHHHHH
Q 021311          193 ANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMID  270 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (314)
                      ++ + +|++|||+|.. .+..++++++++|+++.+|.... ...+++...++.+++++.|++...+.       .++.++
T Consensus       257 ~~-g-~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-------~~~~~~  327 (371)
T cd08281         257 GG-G-VDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCV-------PRRDIP  327 (371)
T ss_pred             CC-C-CCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCC-------hHHHHH
Confidence            76 4 99999999975 55889999999999999996543 23456666778899999998765442       124577


Q ss_pred             HHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          271 YLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       271 ~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .+++++++|++++.   ++.|+|+|+++||+.+.+++..+ |+|+
T Consensus       328 ~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~-~vi~  371 (371)
T cd08281         328 RYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVR-QVIL  371 (371)
T ss_pred             HHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcee-eeeC
Confidence            88999999999863   57899999999999999988776 6653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=4.3e-46  Score=325.98  Aligned_cols=294  Identities=22%  Similarity=0.252  Sum_probs=247.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      +++++.|+|+++||+||+.++++|++|++.+.+.+......|.++|||++|+|+++|++++.+++||+|+..+.      
T Consensus        14 ~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c   93 (339)
T cd08239          14 LREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGAC   93 (339)
T ss_pred             EEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCCCEEEECCCCCCCCC
Confidence            35788999999999999999999999999887764322235889999999999999999999999999987541      


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                           ..|+|++|++++.+.++++|+++++++++++++++.|||+++.+ +++++|++|||+|+
T Consensus        94 ~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~G~  172 (339)
T cd08239          94 RNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRR-VGVSGRDTVLVVGA  172 (339)
T ss_pred             hhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHh-cCCCCCCEEEEECC
Confidence                                 15899999999999999999999999999999999999999965 78999999999987


Q ss_pred             CcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccH-H
Q 021311          134 TSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA-S  211 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~  211 (314)
                       |++|++++|+|+.+|++ ++++.    .++++++.++++|+++++++++...+++++.+++.+ +|++|||+|+... .
T Consensus       173 -G~vG~~~~~~ak~~G~~~vi~~~----~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~-~d~vid~~g~~~~~~  246 (339)
T cd08239         173 -GPVGLGALMLARALGAEDVIGVD----PSPERLELAKALGADFVINSGQDDVQEIRELTSGAG-ADVAIECSGNTAARR  246 (339)
T ss_pred             -CHHHHHHHHHHHHcCCCEEEEEC----CCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCC-CCEEEECCCCHHHHH
Confidence             99999999999999999 66655    267888999999999999887644566777777665 9999999998765 7


Q ss_pred             HHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ceee
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---MELV  288 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~  288 (314)
                      .++++++++|+++.+|........ ....++.+++++.|++...          .+.++++++++.+|++.+.   ++.|
T Consensus       247 ~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~~~~~g~i~~~~~i~~~~  315 (339)
T cd08239         247 LALEAVRPWGRLVLVGEGGELTIE-VSNDLIRKQRTLIGSWYFS----------VPDMEECAEFLARHKLEVDRLVTHRF  315 (339)
T ss_pred             HHHHHhhcCCEEEEEcCCCCcccC-cHHHHHhCCCEEEEEecCC----------HHHHHHHHHHHHcCCCChhHeEEEEe
Confidence            889999999999999965432221 1245667899999986532          1457889999999998753   5689


Q ss_pred             ccccHHHHHHHHhccCCCCCceEeeC
Q 021311          289 PFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       289 ~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++||+.+.+++ .| |+||+|
T Consensus       316 ~l~~~~~a~~~~~~~~-~g-Kvvi~~  339 (339)
T cd08239         316 GLDQAPEAYALFAQGE-SG-KVVFVF  339 (339)
T ss_pred             cHHHHHHHHHHHHcCC-ce-EEEEeC
Confidence            9999999999998865 56 999986

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=5.4e-46  Score=326.72  Aligned_cols=291  Identities=20%  Similarity=0.308  Sum_probs=243.1

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      .+++.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|+....       
T Consensus        28 ~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C  106 (360)
T PLN02586         28 FHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSC  106 (360)
T ss_pred             EeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECCCCCccCCCCEEEEccccCcCCCC
Confidence            467788899999999999999999999998886543 257899999999999999999999999999974210       


Q ss_pred             ---------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCE
Q 021311           75 ---------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDS  127 (314)
Q Consensus        75 ---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  127 (314)
                                                 .+|+|+||++++++.++++|+++++++++.+++.+.|+|+++.+...+++|++
T Consensus       107 ~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~  186 (360)
T PLN02586        107 ESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKH  186 (360)
T ss_pred             ccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCE
Confidence                                       14899999999999999999999999999999999999999987667889999


Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      |||.|+ |++|++++|+|+.+|++++++...   .+++.+.++++|+++++++.+.  +.+++.++   ++|++||++|.
T Consensus       187 VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~---~~~~~~~~~~~Ga~~vi~~~~~--~~~~~~~~---~~D~vid~~g~  257 (360)
T PLN02586        187 LGVAGL-GGLGHVAVKIGKAFGLKVTVISSS---SNKEDEAINRLGADSFLVSTDP--EKMKAAIG---TMDYIIDTVSA  257 (360)
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeCC---cchhhhHHHhCCCcEEEcCCCH--HHHHhhcC---CCCEEEECCCC
Confidence            999887 999999999999999998877643   3344456678999999987653  34555543   39999999997


Q ss_pred             c-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce
Q 021311          208 N-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME  286 (314)
Q Consensus       208 ~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  286 (314)
                      . .+..++++++++|+++.+|... .+..+++..++.++..+.+++.+..          ..++++++++++|++++.++
T Consensus       258 ~~~~~~~~~~l~~~G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~~~li~~g~i~~~~~  326 (360)
T PLN02586        258 VHALGPLLGLLKVNGKLITLGLPE-KPLELPIFPLVLGRKLVGGSDIGGI----------KETQEMLDFCAKHNITADIE  326 (360)
T ss_pred             HHHHHHHHHHhcCCcEEEEeCCCC-CCCccCHHHHHhCCeEEEEcCcCCH----------HHHHHHHHHHHhCCCCCcEE
Confidence            5 4688999999999999999543 3445566666778888887754321          45788999999999998878


Q ss_pred             eeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          287 LVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       287 ~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .|+|+|+++||+.+.+++..| |+|+++
T Consensus       327 ~~~l~~~~~A~~~~~~~~~~g-kvvi~~  353 (360)
T PLN02586        327 LIRMDEINTAMERLAKSDVRY-RFVIDV  353 (360)
T ss_pred             EEeHHHHHHHHHHHHcCCCcE-EEEEEc
Confidence            899999999999999998777 999874

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=8.6e-46  Score=326.33  Aligned_cols=291  Identities=21%  Similarity=0.325  Sum_probs=244.6

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      .+++.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++||+|...+        
T Consensus        22 ~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C  100 (375)
T PLN02178         22 FHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSC  100 (375)
T ss_pred             EeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCCCC
Confidence            356788899999999999999999999999887642 25689999999999999999999999999997421        


Q ss_pred             --------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhc-CCCCC
Q 021311           74 --------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT-LNSGD  126 (314)
Q Consensus        74 --------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~-~~~~~  126 (314)
                                                ...|+|+||++++++.++++|+++++++++.+++...|+|+++..... .++|+
T Consensus       101 ~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~  180 (375)
T PLN02178        101 ESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGK  180 (375)
T ss_pred             hhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCC
Confidence                                      014899999999999999999999999999999999999999876433 36899


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|+|.|+ |++|++++|+|+.+|++++++...   .+++.+.++++|+++++++.+.  +.+++.++   ++|++|||+|
T Consensus       181 ~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~---~~~~~~~a~~lGa~~~i~~~~~--~~v~~~~~---~~D~vid~~G  251 (375)
T PLN02178        181 RLGVNGL-GGLGHIAVKIGKAFGLRVTVISRS---SEKEREAIDRLGADSFLVTTDS--QKMKEAVG---TMDFIIDTVS  251 (375)
T ss_pred             EEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCC---hHHhHHHHHhCCCcEEEcCcCH--HHHHHhhC---CCcEEEECCC
Confidence            9999997 999999999999999998877642   3445677889999999987653  35555553   3999999999


Q ss_pred             Cc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc
Q 021311          207 GN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM  285 (314)
Q Consensus       207 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  285 (314)
                      .+ .+..++++++++|+++.+|... .+..++...++.+++++.|++....          +.++++++++++|++++.+
T Consensus       252 ~~~~~~~~~~~l~~~G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~~~l~~~g~i~~~i  320 (375)
T PLN02178        252 AEHALLPLFSLLKVSGKLVALGLPE-KPLDLPIFPLVLGRKMVGGSQIGGM----------KETQEMLEFCAKHKIVSDI  320 (375)
T ss_pred             cHHHHHHHHHhhcCCCEEEEEccCC-CCCccCHHHHHhCCeEEEEeCccCH----------HHHHHHHHHHHhCCCcccE
Confidence            87 4589999999999999999653 3445666677779999998765331          4578899999999999888


Q ss_pred             eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          286 ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       286 ~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.|+|+|+++||+.+.+++..| |+|+++
T Consensus       321 ~~~~l~~~~~A~~~~~~~~~~g-kvvi~~  348 (375)
T PLN02178        321 ELIKMSDINSAMDRLAKSDVRY-RFVIDV  348 (375)
T ss_pred             EEEeHHHHHHHHHHHHcCCCce-EEEEEe
Confidence            8899999999999999998877 999874

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=2.9e-45  Score=322.61  Aligned_cols=296  Identities=21%  Similarity=0.246  Sum_probs=249.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++|.|+|+++||+|||.++|+|++|++.+.|..+.  .+|.++|||++|+|+++|+++++|++||+|++.+.      
T Consensus        16 ~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c   93 (358)
T TIGR03451        16 LETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQC   93 (358)
T ss_pred             EEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccCCCCEEEEccCCCCCCC
Confidence            3678899999999999999999999999999886543  46899999999999999999999999999986210      


Q ss_pred             ---------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhc
Q 021311           75 ---------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT  121 (314)
Q Consensus        75 ---------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~  121 (314)
                                                       ..|+|+||++++++.++++|+++++++++.+++.+.+||+++.+.++
T Consensus        94 ~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~  173 (358)
T TIGR03451        94 RACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGG  173 (358)
T ss_pred             hHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccC
Confidence                                             14899999999999999999999999999999999999999888789


Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCc
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPA  199 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d  199 (314)
                      +++|++|||+|+ |++|++++|+|+..|++ ++++.    .++++++.++++|+++++++.+. ..+.+++.+++.+ +|
T Consensus       174 ~~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~----~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g-~d  247 (358)
T TIGR03451       174 VKRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVD----IDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFG-AD  247 (358)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc----CCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCC-CC
Confidence            999999999987 99999999999999997 55554    27888999999999999988764 3466888887766 99


Q ss_pred             EEEecCCCc-cHHHHHHhcccCCEEEEEcCCCCC-CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHH
Q 021311          200 LGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAR  277 (314)
Q Consensus       200 ~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  277 (314)
                      ++|||+|++ .+..++++++++|+++.+|..... ..++++..++.+++++.+++.....       .++.++.++++++
T Consensus       248 ~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~~  320 (358)
T TIGR03451       248 VVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCL-------PERDFPMLVDLYL  320 (358)
T ss_pred             EEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCC-------cHHHHHHHHHHHH
Confidence            999999974 568899999999999999965432 3455666677788999987653221       1355788999999


Q ss_pred             cCCcccc---ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          278 EGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       278 ~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      +|++++.   ++.|+++|+++||+.+++++..  |+++.
T Consensus       321 ~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~--k~~~~  357 (358)
T TIGR03451       321 QGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL--RSVVE  357 (358)
T ss_pred             cCCCCchheEEEEecHHHHHHHHHHHhCCCcc--eeEEe
Confidence            9999863   5689999999999999887653  77765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.1e-44  Score=315.15  Aligned_cols=299  Identities=30%  Similarity=0.453  Sum_probs=250.2

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCC-CCCCCEEeeCCCCCCccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR-LAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~-~~~Gd~V~~~~~~~g~~~   80 (314)
                      +++|.|+|+++||+||+.++++|++|++...|.++..+.+|.++|||++|+|+++|+++.+ |++||+|++....+|+|+
T Consensus        21 ~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~~g~~a  100 (324)
T cd08291          21 PEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGSYGTYA  100 (324)
T ss_pred             cccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCCCCcch
Confidence            5778899999999999999999999999998876544467899999999999999999996 999999998753238999


Q ss_pred             ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc-CCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311           81 SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN-GATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      +|++++++.++++|++++++++++++..++|||..+ ..++. ++++++|+ +++|++|++++|+|+.+|++++++++  
T Consensus       101 ~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~--  176 (324)
T cd08291         101 EYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVR--  176 (324)
T ss_pred             heeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC--
Confidence            999999999999999999999998888999998655 44555 45566665 77899999999999999999888774  


Q ss_pred             CCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCc-ccc
Q 021311          160 AGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPI-TVS  237 (314)
Q Consensus       160 ~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~  237 (314)
                        ++++++.++++|+++++++++. ..+.+++.+.+.+ +|++|||+|+......+++++++|+++.+|....... .++
T Consensus       177 --~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~-~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  253 (324)
T cd08291         177 --RKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLN-ATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKLDEPID  253 (324)
T ss_pred             --CHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCC-CcEEEECCCcHHHHHHHHhhCCCCEEEEEEecCCCCcccCC
Confidence              6788899999999999998764 4467888887766 9999999999888888999999999999996544433 244


Q ss_pred             cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEee
Q 021311          238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ....+.+++++.+++...+...    ...+.++.++++++ +.+++.+ ++|+|+|+++||+.+.+++..| |+++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~G-kvv~~  324 (324)
T cd08291         254 PVDLIFKNKSIEGFWLTTWLQK----LGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTG-KKLLI  324 (324)
T ss_pred             HHHHhhcCcEEEEEEHHHhhcc----cCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCC-eEEeC
Confidence            5556778999999887665321    12456788888887 8888765 5899999999999999998888 99874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=6.8e-45  Score=322.45  Aligned_cols=296  Identities=20%  Similarity=0.288  Sum_probs=246.8

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +|++.|+|+++||+|||.++|+|++|++.+.|.++....+|.++|||++|+|+++|+++++|++||+|++...       
T Consensus        26 ~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~  105 (381)
T PLN02740         26 EEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCR  105 (381)
T ss_pred             EEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCCCh
Confidence            5788899999999999999999999999998876544467999999999999999999999999999987531       


Q ss_pred             -------------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHH
Q 021311           75 -------------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLT  111 (314)
Q Consensus        75 -------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  111 (314)
                                                                 ..|+|+||++++.+.++++|+++++++++.+++++.|
T Consensus       106 ~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  185 (381)
T PLN02740        106 YCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVST  185 (381)
T ss_pred             hhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEECCCCCCHHHhhhhcccchh
Confidence                                                       1489999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh---hHHH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKN  187 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~---~~~~  187 (314)
                      ||+++.+.+++++|++|||+|+ |++|++++|+|+.+|++ ++++..    ++++++.++++|+++++++.+.   ..+.
T Consensus       186 a~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~----~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~  260 (381)
T PLN02740        186 GVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDI----NPEKFEKGKEMGITDFINPKDSDKPVHER  260 (381)
T ss_pred             hHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcC----ChHHHHHHHHcCCcEEEecccccchHHHH
Confidence            9999888789999999999997 99999999999999995 665552    7888999999999999987653   3466


Q ss_pred             HHHHhcCCCCCcEEEecCCCc-cHHHHHHhcccC-CEEEEEcCCCCC-CcccccccceecceEEEEEechhhccccCHHH
Q 021311          188 VKGLLANLPEPALGFNCVGGN-SASKVLKFLSQG-GTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATE  264 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (314)
                      +++++++ + +|++|||+|.+ ....++.+++++ |+++.+|..... ...+.+..+ .+++++.|++.+.+.       
T Consensus       261 v~~~~~~-g-~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~-------  330 (381)
T PLN02740        261 IREMTGG-G-VDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-FDGRSITGSVFGDFK-------  330 (381)
T ss_pred             HHHHhCC-C-CCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-hcCCeEEEEecCCCC-------
Confidence            7777776 4 99999999985 458899999996 999999965432 123333323 368899988765431       


Q ss_pred             HHHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          265 CRNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       265 ~~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ....+.++++++.+|.+++.   ++.|+|+|+++||+.+.+++.  .|++|+.
T Consensus       331 ~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~--~k~~~~~  381 (381)
T PLN02740        331 GKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA--LRCLLHL  381 (381)
T ss_pred             cHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc--eeEEEeC
Confidence            12457889999999998763   578999999999999988764  3999864

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1e-44  Score=319.87  Aligned_cols=295  Identities=20%  Similarity=0.277  Sum_probs=242.2

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|+|+++||+|||.++|+|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++||+|++.+.       
T Consensus        17 ~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~   95 (368)
T TIGR02818        17 EEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECK   95 (368)
T ss_pred             EEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCCCCh
Confidence            578899999999999999999999999999887653 257899999999999999999999999999987531       


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|+||++++++.++++|+++++++++++++++.|||+
T Consensus        96 ~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~  175 (368)
T TIGR02818        96 FCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIG  175 (368)
T ss_pred             hhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHH
Confidence                                                    0268999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh--h-hHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ--L-EVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~--~-~~~~i~~  190 (314)
                      ++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.    .++++++.++++|+++++++.+  . ..+.+++
T Consensus       176 a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~----~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~  250 (368)
T TIGR02818       176 AVLNTAKVEEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAID----INPAKFELAKKLGATDCVNPNDYDKPIQEVIVE  250 (368)
T ss_pred             HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc----CCHHHHHHHHHhCCCeEEcccccchhHHHHHHH
Confidence            9987789999999999987 9999999999999999 566655    3788899999999999998764  2 3356777


Q ss_pred             HhcCCCCCcEEEecCCCc-cHHHHHHhcccC-CEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          191 LLANLPEPALGFNCVGGN-SASKVLKFLSQG-GTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      ++++ + +|++|||+|.+ ....++++++++ |+++.+|.... .+.++....++. +..+.++.....       ..+.
T Consensus       251 ~~~~-g-~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~-------~~~~  320 (368)
T TIGR02818       251 ITDG-G-VDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGV-------KGRT  320 (368)
T ss_pred             HhCC-C-CCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCC-------CcHH
Confidence            7776 4 99999999975 458899999886 99999996542 233333443433 345666543321       1124


Q ss_pred             HHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++++++++++|++++.   ++.|+|+|+++||+.+.+++. . |++|+|
T Consensus       321 ~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~-k~~v~~  368 (368)
T TIGR02818       321 ELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-I-RTVIHY  368 (368)
T ss_pred             HHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-e-eEEeeC
Confidence            57889999999998753   678999999999999988654 3 999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-45  Score=318.60  Aligned_cols=288  Identities=19%  Similarity=0.203  Sum_probs=234.8

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhc-cCCCC-CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIE-GVYPV-RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-----   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~-~~~~~-~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-----   73 (314)
                      +++++.| ++++||+|||.++|||++|++++. +..+. ...+|.++|||++|+|+++  ++++|++||+|+..+     
T Consensus        18 ~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~~vGdrV~~~~~~~cg   94 (343)
T PRK09880         18 VTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQTVAINPSKPCG   94 (343)
T ss_pred             EEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccCCCCCEEEECCCCCCc
Confidence            3567776 689999999999999999999875 43322 2257899999999999999  788999999998632     


Q ss_pred             --------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCE
Q 021311           74 --------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDS  127 (314)
Q Consensus        74 --------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  127 (314)
                                                ..+|+|+||++++++.++++|+++++++++. ..++.+||+++.+ ....++++
T Consensus        95 ~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~-~~~~~~a~~al~~-~~~~~g~~  172 (343)
T PRK09880         95 HCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAF-AEPLAVAIHAAHQ-AGDLQGKR  172 (343)
T ss_pred             CChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHHh-hcHHHHHHHHHHh-cCCCCCCE
Confidence                                      1259999999999999999999999987664 4478899999976 56678999


Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      |+|+|+ |++|++++|+|+.+|++ ++++.    .++++++.++++|+++++++++....++...   .+++|++|||+|
T Consensus       173 VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~----~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~---~g~~D~vid~~G  244 (343)
T PRK09880        173 VFVSGV-GPIGCLIVAAVKTLGAAEIVCAD----VSPRSLSLAREMGADKLVNPQNDDLDHYKAE---KGYFDVSFEVSG  244 (343)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCcEEEEEe----CCHHHHHHHHHcCCcEEecCCcccHHHHhcc---CCCCCEEEECCC
Confidence            999997 99999999999999996 44454    2788999999999999999877554443322   224999999999


Q ss_pred             Cc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-
Q 021311          207 GN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-  284 (314)
Q Consensus       207 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-  284 (314)
                      .+ .+..++++++++|+++.+|... ...+++...++.+++++.+++..           .+.++.+++++++|++++. 
T Consensus       245 ~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~-----------~~~~~~~~~l~~~g~i~~~~  312 (343)
T PRK09880        245 HPSSINTCLEVTRAKGVMVQVGMGG-APPEFPMMTLIVKEISLKGSFRF-----------TEEFNTAVSWLANGVINPLP  312 (343)
T ss_pred             CHHHHHHHHHHhhcCCEEEEEccCC-CCCccCHHHHHhCCcEEEEEeec-----------cccHHHHHHHHHcCCCCchh
Confidence            85 4689999999999999999543 33455666677899999987531           1457889999999999863 


Q ss_pred             --ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 --MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 --~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                        ++.|+++|+++||+.+.+++..+ |+++++
T Consensus       313 ~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvl~~  343 (343)
T PRK09880        313 LLSAEYPFTDLEEALIFAGDKTQAA-KVQLVF  343 (343)
T ss_pred             heEEEEEHHHHHHHHHHHhcCCCce-EEEEeC
Confidence              47899999999999999987766 999975

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.2e-44  Score=320.02  Aligned_cols=294  Identities=22%  Similarity=0.277  Sum_probs=246.4

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++|+|.|+|+++||+|||.++|+|++|++.+.+..    .+|.++|||++|+|+++|+++++|++||+|++...      
T Consensus        27 ~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C  102 (378)
T PLN02827         27 MEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSC  102 (378)
T ss_pred             EEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCCCC
Confidence            35789999999999999999999999999887642    35789999999999999999999999999998632      


Q ss_pred             -----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           75 -----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        75 -----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                               ..|+|+||+.++++.++++|+++++++++.+++++.++|
T Consensus       103 ~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~  182 (378)
T PLN02827        103 RHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGL  182 (378)
T ss_pred             hhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCCCHHHhhhhcchhHhhH
Confidence                                                     027999999999999999999999999999988889999


Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHHHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVKNVKG  190 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~i~~  190 (314)
                      +++.+.+++++|++|||+|+ |++|++++|+|+.+|++.+++++.   ++++.+.++++|+++++++++   ...+.+++
T Consensus       183 ~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~---~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~  258 (378)
T PLN02827        183 GAAWNVADVSKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDI---NPEKAEKAKTFGVTDFINPNDLSEPIQQVIKR  258 (378)
T ss_pred             HHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECC---CHHHHHHHHHcCCcEEEcccccchHHHHHHHH
Confidence            98877788999999999997 999999999999999976555543   678889999999999998765   23456777


Q ss_pred             HhcCCCCCcEEEecCCCc-cHHHHHHhcccC-CEEEEEcCCCCCCccccc-ccceecceEEEEEechhhccccCHHHHHH
Q 021311          191 LLANLPEPALGFNCVGGN-SASKVLKFLSQG-GTMVTYGGMSKKPITVST-SAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      ++++ + +|++|||+|.. .+..+++.++++ |+++.+|..... ..+.. ..++.+++++.|++...+.       ...
T Consensus       259 ~~~~-g-~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~-------~~~  328 (378)
T PLN02827        259 MTGG-G-ADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK-PEVSAHYGLFLSGRTLKGSLFGGWK-------PKS  328 (378)
T ss_pred             HhCC-C-CCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC-ccccccHHHHhcCceEEeeecCCCc-------hhh
Confidence            7765 4 99999999986 468999999998 999999965432 23333 3466789999998765431       124


Q ss_pred             HHHHHHHHHHcCCccc--c-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKY--D-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++.+++++++|++++  . ++.|+|+++++||+.+.+++. . |+||.|
T Consensus       329 ~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~-k~vi~~  376 (378)
T PLN02827        329 DLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-L-RCVIHM  376 (378)
T ss_pred             hHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-e-EEEEEe
Confidence            5778899999999997  2 568999999999999998876 4 999875

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.2e-44  Score=314.45  Aligned_cols=284  Identities=18%  Similarity=0.173  Sum_probs=239.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      ++++|.|+|+++||+|||.++|+|++|.+.+.|.++.. ..|.++|||++|+|+++|+++++|++||+|+..+       
T Consensus        17 ~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~   95 (329)
T TIGR02822        17 FVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVH-RPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGV   95 (329)
T ss_pred             EEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCC-CCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcCCC
Confidence            36789999999999999999999999999998876432 3478999999999999999999999999997521       


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ..+|+|+||+.++++.++++|+++++++++.+++++.|||+++.+ +++++|++|||+|+
T Consensus        96 c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~VlV~G~  174 (329)
T TIGR02822        96 CRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLPPGGRLGLYGF  174 (329)
T ss_pred             ChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHh-cCCCCCCEEEEEcC
Confidence                                014899999999999999999999999999999999999999965 88999999999998


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCc-cHHH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN-SASK  212 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~-~~~~  212 (314)
                       |++|++++|+|+..|++++++.+    ++++++.++++|+++++++.+..         .. ++|+++++.+.. .+..
T Consensus       175 -g~iG~~a~~~a~~~G~~vi~~~~----~~~~~~~a~~~Ga~~vi~~~~~~---------~~-~~d~~i~~~~~~~~~~~  239 (329)
T TIGR02822       175 -GGSAHLTAQVALAQGATVHVMTR----GAAARRLALALGAASAGGAYDTP---------PE-PLDAAILFAPAGGLVPP  239 (329)
T ss_pred             -CHHHHHHHHHHHHCCCeEEEEeC----ChHHHHHHHHhCCceeccccccC---------cc-cceEEEECCCcHHHHHH
Confidence             99999999999999999887763    67889999999999998754321         11 389999888764 4589


Q ss_pred             HHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeecccc
Q 021311          213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNN  292 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  292 (314)
                      ++++++++|+++.+|...+....+++..++.+++++.+++...          +..+.++++++++|++++.++.|+|+|
T Consensus       240 ~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~i~~i~~~~~l~~  309 (329)
T TIGR02822       240 ALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNT----------RADAREFLELAAQHGVRVTTHTYPLSE  309 (329)
T ss_pred             HHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCC----------HHHHHHHHHHHHhCCCeeEEEEEeHHH
Confidence            9999999999999996433333445555667888888875421          234677889999999987778899999


Q ss_pred             HHHHHHHHhccCCCCCceEe
Q 021311          293 FQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       293 ~~~a~~~~~~~~~~~~k~vi  312 (314)
                      +++||+.+.+++..| |+||
T Consensus       310 ~~~A~~~~~~~~~~G-kvvl  328 (329)
T TIGR02822       310 ADRALRDLKAGRFDG-AAVL  328 (329)
T ss_pred             HHHHHHHHHcCCCce-EEEe
Confidence            999999999998888 9887

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.8e-45  Score=296.07  Aligned_cols=297  Identities=23%  Similarity=0.291  Sum_probs=260.5

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      |+|+..++|+.+||+||+.++++|++|...++|..+. ..+|.++|||.+|+|+.+|..|+.+++||+|+.++..     
T Consensus        22 IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~-~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeC  100 (375)
T KOG0022|consen   22 IEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE-GLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGEC  100 (375)
T ss_pred             EEEEEeCCCCCceEEEEEEEEeeccccceeecCCCcc-ccCceEecccceeEEEEecCCccccCCCCEEeeccccCCCCc
Confidence            5789999999999999999999999999999998643 3789999999999999999999999999999987632     


Q ss_pred             -------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHH
Q 021311           76 -------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA  112 (314)
Q Consensus        76 -------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  112 (314)
                                                                 ..+|+||.+++...++++++..+++.++++.+...|.
T Consensus       101 k~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG  180 (375)
T KOG0022|consen  101 KFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTG  180 (375)
T ss_pred             ccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeecccccc
Confidence                                                       4489999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh---hHHHHH
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKNVK  189 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~---~~~~i~  189 (314)
                      |.+.-+.++++||+++.|+|- |++|+++++-||..||..|+-+|-   .+++.+.++++|+++.+|..+.   ..+.++
T Consensus       181 ~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Gaka~GAsrIIgvDi---N~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~  256 (375)
T KOG0022|consen  181 YGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGAKAAGASRIIGVDI---NPDKFEKAKEFGATEFINPKDLKKPIQEVII  256 (375)
T ss_pred             chhhhhhcccCCCCEEEEEec-chHHHHHHHhHHhcCcccEEEEec---CHHHHHHHHhcCcceecChhhccccHHHHHH
Confidence            999999999999999999999 999999999999999988888876   7899999999999999988742   236688


Q ss_pred             HHhcCCCCCcEEEecCCCccH-HHHHHhcccC-CEEEEEcCCC-CCCcccccccceecceEEEEEechhhccccCHHHHH
Q 021311          190 GLLANLPEPALGFNCVGGNSA-SKVLKFLSQG-GTMVTYGGMS-KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR  266 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (314)
                      +.|++  ++|+-|||.|.... .+++.+.+.+ |+-|.+|... +..+++.+..++ ++.++.|+.++.|       ..+
T Consensus       257 EmTdg--GvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~-~GR~~~Gs~FGG~-------K~~  326 (375)
T KOG0022|consen  257 EMTDG--GVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLV-TGRTWKGSAFGGF-------KSK  326 (375)
T ss_pred             HHhcC--CceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhc-cccEEEEEecccc-------cch
Confidence            89986  79999999999654 7888888777 9999999654 345677777776 5788888877765       345


Q ss_pred             HHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          267 NMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       267 ~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++..+++...++++...   +|.+||+++++||+.|.+++..  |.|+.+
T Consensus       327 ~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi--R~vl~~  375 (375)
T KOG0022|consen  327 SDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI--RCVLWM  375 (375)
T ss_pred             hhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE--EEEEeC
Confidence            678888999999999865   7899999999999999998875  777653

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=2.5e-43  Score=306.76  Aligned_cols=304  Identities=31%  Similarity=0.522  Sum_probs=260.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|.+.++||+|||.++++|+.|+..+.|.++..+..|.++|||++|+|+++|++++.+++||+|++... .|+|++
T Consensus        19 ~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~g~~~~   97 (324)
T cd08292          19 GEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPV-HGTWAE   97 (324)
T ss_pred             eecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccC-CCccee
Confidence            5678889999999999999999999999988876543456889999999999999999999999999999853 489999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |+.++++.++++|+++++++++.++..+.+||+++.. +++++|++|||+|++|.+|++++++|+.+|++++++++    
T Consensus        98 ~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~----  172 (324)
T cd08292          98 YFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR----  172 (324)
T ss_pred             EEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec----
Confidence            9999999999999999999999999999999999855 89999999999999999999999999999999998885    


Q ss_pred             cHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ++++++.++++|.++++++++. +.+.++.++.+++ +|++|||+|+.....++++++++|+++.+|.......++.+..
T Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~-~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  251 (324)
T cd08292         173 RDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAP-ISVALDSVGGKLAGELLSLLGEGGTLVSFGSMSGEPMQISSGD  251 (324)
T ss_pred             CHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCC-CcEEEECCCChhHHHHHHhhcCCcEEEEEecCCCCCCcCCHHH
Confidence            5677777788899999888764 3466888888776 9999999999888899999999999999986533334444444


Q ss_pred             ceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .+.+++++.++....+.....+....+.++.+++++.+|.+.+. ++.|+++++.+|++.+.+++..+ |++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~-kvvv~  324 (324)
T cd08292         252 LIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAG-KVLLR  324 (324)
T ss_pred             HhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCc-eEEeC
Confidence            56789999998876553322255566788999999999999855 56799999999999999887776 88874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.1e-43  Score=312.13  Aligned_cols=291  Identities=24%  Similarity=0.293  Sum_probs=243.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      +++++.|+|+++||+|||.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++||+|+...       
T Consensus        24 ~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~  102 (357)
T PLN02514         24 PYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGE  102 (357)
T ss_pred             EEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCcccccCCCEEEEcCccccCCC
Confidence            3578899999999999999999999999998886543 25689999999999999999999999999997421       


Q ss_pred             ---------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCC
Q 021311           74 ---------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGD  126 (314)
Q Consensus        74 ---------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  126 (314)
                                                 ...|+|+||++++.+.++++|+++++++++.+++++.|||+++.+....++|+
T Consensus       103 C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~  182 (357)
T PLN02514        103 CSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGL  182 (357)
T ss_pred             ChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCC
Confidence                                       01489999999999999999999999999999999999999998766678999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +++|+|+ |++|++++|+|+.+|++++++++    +++++. .++.+|++.++++.+.  +.+++.+.   ++|++|||+
T Consensus       183 ~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~----~~~~~~~~~~~~Ga~~~i~~~~~--~~~~~~~~---~~D~vid~~  252 (357)
T PLN02514        183 RGGILGL-GGVGHMGVKIAKAMGHHVTVISS----SDKKREEALEHLGADDYLVSSDA--AEMQEAAD---SLDYIIDTV  252 (357)
T ss_pred             eEEEEcc-cHHHHHHHHHHHHCCCeEEEEeC----CHHHHHHHHHhcCCcEEecCCCh--HHHHHhcC---CCcEEEECC
Confidence            9999976 99999999999999999888774    444444 4467999988776543  34555443   399999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD  284 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  284 (314)
                      |.. ....++++++++|+++.+|.... ..++....++.+++++.|++....          ..++++++++++|++++.
T Consensus       253 g~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~~~~~~~g~l~~~  321 (357)
T PLN02514        253 PVFHPLEPYLSLLKLDGKLILMGVINT-PLQFVTPMLMLGRKVITGSFIGSM----------KETEEMLEFCKEKGLTSM  321 (357)
T ss_pred             CchHHHHHHHHHhccCCEEEEECCCCC-CCcccHHHHhhCCcEEEEEecCCH----------HHHHHHHHHHHhCCCcCc
Confidence            964 56889999999999999996543 345556667788999999866432          357889999999999887


Q ss_pred             ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 ~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.|+++|+.+||+.+.+++..+ |+|+++
T Consensus       322 i~~~~l~~~~~A~~~~~~~~~~g-k~v~~~  350 (357)
T PLN02514        322 IEVVKMDYVNTAFERLEKNDVRY-RFVVDV  350 (357)
T ss_pred             EEEEcHHHHHHHHHHHHcCCCce-eEEEEc
Confidence            88899999999999999998777 999864

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2e-43  Score=308.99  Aligned_cols=294  Identities=22%  Similarity=0.279  Sum_probs=242.1

Q ss_pred             CCCCC-CCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCc--ceEEEEEEecCCCCCCCCCCEEeeCCCCCCccc
Q 021311            4 LPPVE-VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGY--EGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         4 ~~~p~-~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~--e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      ++.|. ++++||||||.++++|+.|+....+... .+..|.++|+  |++|+|..+|+++++|++||+|+++    |+|+
T Consensus        35 ~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~-~~~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~----~~~a  109 (348)
T PLN03154         35 IELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD-SYLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI----TGWE  109 (348)
T ss_pred             cCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC-CCCCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec----CCcE
Confidence            56663 5899999999999999998765443222 1235789997  8899999999999999999999875    6899


Q ss_pred             ceEeeeccc--eEE--cCCCCCHH-HhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEE
Q 021311           81 SYVVKDQSV--WHK--VSKDSPME-YAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI  155 (314)
Q Consensus        81 ~~~~~~~~~--~~~--~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~  155 (314)
                      +|.+++.+.  +.+  +|++++++ ++|+++++++|||+++.+.+++++|++|||+|++|++|++++|+|+.+|++++++
T Consensus       110 ey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~  189 (348)
T PLN03154        110 EYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGS  189 (348)
T ss_pred             EEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE
Confidence            999999753  544  59999986 6889999999999999888899999999999999999999999999999998877


Q ss_pred             ecCCCCcHHHHHHHH-hCCCcEEEecCh--hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC
Q 021311          156 IRDRAGSDEAKEKLK-GLGADEVFTESQ--LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~-~lg~~~~~~~~~--~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      +.    ++++.+.++ ++|+++++++++  ...+.+++.+++  ++|++|||+|+..+..++++++++|+++.+|...+.
T Consensus       190 ~~----~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~--gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~~  263 (348)
T PLN03154        190 AG----SSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPE--GIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSLN  263 (348)
T ss_pred             cC----CHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCC--CcEEEEECCCHHHHHHHHHHhccCCEEEEECccccC
Confidence            73    677888887 799999999874  334567776653  499999999998789999999999999999965443


Q ss_pred             Ccc-----cccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce-eeccccHHHHHHHHhccCCC
Q 021311          233 PIT-----VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME-LVPFNNFQTALSKALGLHGS  306 (314)
Q Consensus       233 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~a~~~~~~~~~~  306 (314)
                      ...     .+...++.+++++.|++...+.     ....+.++++++++++|++++.++ .|+|+++++||+.+.+++..
T Consensus       264 ~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~-----~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~  338 (348)
T PLN03154        264 SLSASQGIHNLYNLISKRIRMQGFLQSDYL-----HLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNV  338 (348)
T ss_pred             CCCCCCCcccHHHHhhccceEEEEEHHHHH-----HHHHHHHHHHHHHHHCCCccCceecccCHHHHHHHHHHHHcCCCC
Confidence            221     2334567789999998765431     223467889999999999998765 79999999999999999988


Q ss_pred             CCceEeeC
Q 021311          307 QPKQVIKF  314 (314)
Q Consensus       307 ~~k~vi~~  314 (314)
                      | |+|+++
T Consensus       339 G-KvVl~~  345 (348)
T PLN03154        339 G-KQVIRV  345 (348)
T ss_pred             c-eEEEEe
Confidence            8 999874

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.2e-43  Score=313.63  Aligned_cols=294  Identities=20%  Similarity=0.299  Sum_probs=245.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++|.|+|+++||+|||.++++|++|++.+.|..+. +.+|.++|||++|+|+++|+++++|++||+|++.+.      
T Consensus        17 l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c   95 (369)
T cd08301          17 IEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKEC   95 (369)
T ss_pred             EEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCCCC
Confidence            3678899999999999999999999999999887653 367899999999999999999999999999997521      


Q ss_pred             ------------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHH
Q 021311           75 ------------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA  112 (314)
Q Consensus        75 ------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  112 (314)
                                                                ..|+|+||++++++.++++|+++++++++++++++.||
T Consensus        96 ~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta  175 (369)
T cd08301          96 RHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTG  175 (369)
T ss_pred             chhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCCCHHHhhhhcchhhHH
Confidence                                                      13789999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHHHH
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVKNV  188 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~i  188 (314)
                      |+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.+    ++++++.++++|++.++++.+   ...+.+
T Consensus       176 ~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~----~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v  250 (369)
T cd08301         176 LGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDL----NPSKFEQAKKFGVTEFVNPKDHDKPVQEVI  250 (369)
T ss_pred             HHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC----CHHHHHHHHHcCCceEEcccccchhHHHHH
Confidence            999888889999999999987 9999999999999999 5666663    678899999999999998764   233557


Q ss_pred             HHHhcCCCCCcEEEecCCCcc-HHHHHHhcccC-CEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHH
Q 021311          189 KGLLANLPEPALGFNCVGGNS-ASKVLKFLSQG-GTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATEC  265 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (314)
                      ++++++  ++|++|||+|... ...++++++++ |+++.+|.... ...++.+..++ +++++.|++...+.       .
T Consensus       251 ~~~~~~--~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~-------~  320 (369)
T cd08301         251 AEMTGG--GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFGGYK-------P  320 (369)
T ss_pred             HHHhCC--CCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHh-cCCeEEEEecCCCC-------h
Confidence            777765  4999999999864 58889999996 99999996543 23344433344 68999998765441       2


Q ss_pred             HHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          266 RNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       266 ~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      +..++.+++++.+|.+++.   ++.|+|+|+++||+.+.+++. . |++|
T Consensus       321 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~-k~~~  368 (369)
T cd08301         321 KTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGEC-L-RCIL  368 (369)
T ss_pred             HHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCc-e-eEEe
Confidence            2457889999999988763   578999999999999998875 3 8876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1e-43  Score=313.73  Aligned_cols=295  Identities=23%  Similarity=0.336  Sum_probs=242.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++|.|+|+++||+|||.++|+|++|++.+.|.++.. .+|.++|||++|+|+++|+++++|++||+|++.+.      
T Consensus        17 ~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~-~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C   95 (368)
T cd08300          17 IEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEG-LFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGEC   95 (368)
T ss_pred             EEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccC-CCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCCC
Confidence            35788999999999999999999999999998876532 57999999999999999999999999999987521      


Q ss_pred             -----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           75 -----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        75 -----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                               ..|+|+||+.++++.++++|+++++++++.+++++.|||
T Consensus        96 ~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~  175 (368)
T cd08300          96 KFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGY  175 (368)
T ss_pred             hhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCCChhhhhhhccchhhhH
Confidence                                                     136899999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh---hHHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKNVK  189 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~---~~~~i~  189 (314)
                      +++.+.+++++|++|||+|+ |++|++++|+|+.+|+. ++++..    ++++++.++++|+++++++++.   ..+.++
T Consensus       176 ~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~----~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~  250 (368)
T cd08300         176 GAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDI----NPDKFELAKKFGATDCVNPKDHDKPIQQVLV  250 (368)
T ss_pred             HHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC----CHHHHHHHHHcCCCEEEcccccchHHHHHHH
Confidence            99887789999999999986 99999999999999994 666653    7888899999999999988653   346677


Q ss_pred             HHhcCCCCCcEEEecCCCc-cHHHHHHhcccC-CEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHH
Q 021311          190 GLLANLPEPALGFNCVGGN-SASKVLKFLSQG-GTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR  266 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (314)
                      +++++ + +|++|||+|+. ....++++++++ |+++.+|.... ....+....+. ++.++.++....+.       ..
T Consensus       251 ~~~~~-g-~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-------~~  320 (368)
T cd08300         251 EMTDG-G-VDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWK-------SR  320 (368)
T ss_pred             HHhCC-C-CcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccC-------cH
Confidence            77775 4 99999999975 568899999886 99999996532 22333333333 34566666554431       13


Q ss_pred             HHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          267 NMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       267 ~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      +.+.++++++.+|++++.   ++.|+|+|+++||+.+.+++.  .|++|+
T Consensus       321 ~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~--~k~~~~  368 (368)
T cd08300         321 SQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS--IRTVVK  368 (368)
T ss_pred             HHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC--ceeeeC
Confidence            457788999999999863   578999999999999988764  398874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=2.2e-43  Score=309.65  Aligned_cols=294  Identities=21%  Similarity=0.250  Sum_probs=245.0

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++|.|+|+++||+|||.++|+|++|++.+.+.+.....+|.++|||++|+|+++|+++..+ +||+|++.+.      
T Consensus        13 ~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~~cg~c   91 (349)
T TIGR03201        13 KTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVIPCGEC   91 (349)
T ss_pred             EEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCCCCCCC
Confidence            368899999999999999999999999988744332223568999999999999999999887 9999987320      


Q ss_pred             --------------------CCCcccceEeeeccceEEcCC------CCCHHHhhcccccHHHHHHHHHHhhcCCCCCEE
Q 021311           75 --------------------SSGTWQSYVVKDQSVWHKVSK------DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSI  128 (314)
Q Consensus        75 --------------------~~g~~~~~~~~~~~~~~~~p~------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~v  128 (314)
                                          .+|+|+||+.++.+.++++|+      +++++.++.++.++.++|+++.+ .++++|++|
T Consensus        92 ~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~~-~~~~~g~~V  170 (349)
T TIGR03201        92 ELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ-AGLKKGDLV  170 (349)
T ss_pred             hhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHHh-cCCCCCCEE
Confidence                                158999999999999999999      89999999999999999999876 889999999


Q ss_pred             EEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh----hHHHHHHHhcCCCCCc----E
Q 021311          129 VQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL----EVKNVKGLLANLPEPA----L  200 (314)
Q Consensus       129 lI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~----~~~~i~~~~~~~g~~d----~  200 (314)
                      +|+|+ |++|++++|+|+..|++++++.+    ++++++.++++|+++++++.+.    ..+.+++++++.| +|    +
T Consensus       171 lV~G~-G~vG~~a~~~a~~~G~~vi~~~~----~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g-~d~~~d~  244 (349)
T TIGR03201       171 IVIGA-GGVGGYMVQTAKAMGAAVVAIDI----DPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARG-LRSTGWK  244 (349)
T ss_pred             EEECC-CHHHHHHHHHHHHcCCeEEEEcC----CHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCC-CCCCcCE
Confidence            99999 99999999999999998777663    7888899999999999987653    3355777777766 76    8


Q ss_pred             EEecCCCccH-HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcC
Q 021311          201 GFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       201 v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      +|||+|+... ..++++++++|+++.+|.... ..++++..++.+++++.|.+...          .+.++.+++++++|
T Consensus       245 v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~i~~g  313 (349)
T TIGR03201       245 IFECSGSKPGQESALSLLSHGGTLVVVGYTMA-KTEYRLSNLMAFHARALGNWGCP----------PDRYPAALDLVLDG  313 (349)
T ss_pred             EEECCCChHHHHHHHHHHhcCCeEEEECcCCC-CcccCHHHHhhcccEEEEEecCC----------HHHHHHHHHHHHcC
Confidence            9999998764 678999999999999996543 33445556666778888875421          14578899999999


Q ss_pred             Ccccc--ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          280 KLKYD--MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       280 ~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++.  ++.|+|+|+++||+.+.+++..+ |+++++
T Consensus       314 ~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~-k~~~~~  349 (349)
T TIGR03201       314 KIQLGPFVERRPLDQIEHVFAAAHHHKLKR-RAILTP  349 (349)
T ss_pred             CCCcccceEEecHHHHHHHHHHHHcCCccc-eEEecC
Confidence            99763  56799999999999999998777 998864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=3.1e-43  Score=310.38  Aligned_cols=294  Identities=24%  Similarity=0.336  Sum_probs=243.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++|.|.++++||+|||.++++|++|++.+.|..+  +.+|.++|||++|+|+++|++++++++||+|++...      
T Consensus        17 ~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c   94 (365)
T cd08277          17 IEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGEC   94 (365)
T ss_pred             EEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCCC
Confidence            367889999999999999999999999999988765  357899999999999999999999999999987521      


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|+||++++.+.++++|+++++++++++++++.|||+
T Consensus        95 ~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~  174 (365)
T cd08277          95 SNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYG  174 (365)
T ss_pred             chhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHH
Confidence                                                    1378999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh---hHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~---~~~~i~~  190 (314)
                      ++.+.+++++|++|||+|+ |++|++++|+|+.+|+. ++++.    .++++++.++++|++++++..+.   ..+.+++
T Consensus       175 ~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~----~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~  249 (365)
T cd08277         175 AAWNTAKVEPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVD----INEDKFEKAKEFGATDFINPKDSDKPVSEVIRE  249 (365)
T ss_pred             HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEe----CCHHHHHHHHHcCCCcEeccccccchHHHHHHH
Confidence            9877789999999999986 99999999999999995 65555    26888899999999999987653   2456777


Q ss_pred             HhcCCCCCcEEEecCCCcc-HHHHHHhcccC-CEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHH
Q 021311          191 LLANLPEPALGFNCVGGNS-ASKVLKFLSQG-GTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNM  268 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (314)
                      +++ . ++|++|||+|... ...++++++++ |+++.+|...+...++++..++. ++++.|++.+.+.       .+..
T Consensus       250 ~~~-~-g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~-------~~~~  319 (365)
T cd08277         250 MTG-G-GVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFK-------SRSD  319 (365)
T ss_pred             HhC-C-CCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCC-------hHHH
Confidence            776 3 4999999999754 48899999885 99999996554334444444543 7888888765441       1245


Q ss_pred             HHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          269 IDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       269 ~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ++.++++++++.+++.   ++.|+++|+++||+.+.+++ . .|++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~-~k~~i~  365 (365)
T cd08277         320 VPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-C-IRTVIT  365 (365)
T ss_pred             HHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-C-ceEeeC
Confidence            7889999999987753   57899999999999998876 3 398874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=5.5e-43  Score=309.91  Aligned_cols=293  Identities=15%  Similarity=0.120  Sum_probs=229.0

Q ss_pred             CccCCCCCCC-------CCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC
Q 021311            1 MIELPPVEVK-------ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP   73 (314)
Q Consensus         1 i~~~~~p~~~-------~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~   73 (314)
                      ++|+|.|+|+       ++||+|||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++|++|++||||.+.+
T Consensus        16 ~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~   93 (393)
T TIGR02819        16 VQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPF   93 (393)
T ss_pred             EEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEcCccccccCCCEEEEec
Confidence            3678888874       689999999999999999999886542  4689999999999999999999999999997631


Q ss_pred             C------------------------------------CCCcccceEeeecc--ceEEcCCCCCH----HHhhcccccHHH
Q 021311           74 P------------------------------------SSGTWQSYVVKDQS--VWHKVSKDSPM----EYAATIIVNPLT  111 (314)
Q Consensus        74 ~------------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~----~~aa~~~~~~~t  111 (314)
                      .                                    .+|+|+||++++..  +++++|++++.    ..++++..++.+
T Consensus        94 ~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~t  173 (393)
T TIGR02819        94 NIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPT  173 (393)
T ss_pred             ccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcccccccccceeeeccHHHH
Confidence            0                                    14899999999964  79999998753    356677778999


Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEec-Ch-hhHHHHH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE-SQ-LEVKNVK  189 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~-~~~~~i~  189 (314)
                      +|+++.+ ++++++++|||.|+ |++|++++|+|+.+|++++++++.   ++++++.++++|++. +++ .+ ...+.+.
T Consensus       174 a~~a~~~-~~~~~g~~VlV~G~-G~iG~~aiqlAk~~Ga~~vi~~d~---~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~  247 (393)
T TIGR02819       174 GYHGAVT-AGVGPGSTVYIAGA-GPVGLAAAASAQLLGAAVVIVGDL---NPARLAQARSFGCET-VDLSKDATLPEQIE  247 (393)
T ss_pred             HHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCC---CHHHHHHHHHcCCeE-EecCCcccHHHHHH
Confidence            9999865 88999999999776 999999999999999998776653   678999999999975 444 33 3345677


Q ss_pred             HHhcCCCCCcEEEecCCCc---------------cHHHHHHhcccCCEEEEEcCCCC-CCcc-----------cccccce
Q 021311          190 GLLANLPEPALGFNCVGGN---------------SASKVLKFLSQGGTMVTYGGMSK-KPIT-----------VSTSAFI  242 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~~-~~~~-----------~~~~~~~  242 (314)
                      +++++.+ +|++|||+|.+               .+..++++++++|+++.+|.... ....           +.....+
T Consensus       248 ~~~~~~g-~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~  326 (393)
T TIGR02819       248 QILGEPE-VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGW  326 (393)
T ss_pred             HHcCCCC-CcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhh
Confidence            7777665 99999999986               46889999999999999997532 2211           2222333


Q ss_pred             ecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---c-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---M-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .+++++.+...          ...+...++++++.+|++.+.   + +.|+|+|+++||+.+.+++. + |++|++
T Consensus       327 ~~~~~i~g~~~----------~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~-~-Kvvi~~  390 (393)
T TIGR02819       327 AKSHSFHTGQT----------PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA-K-KFVIDP  390 (393)
T ss_pred             ccCceEEeccC----------ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc-e-EEEEeC
Confidence            44444444211          011234678999999999863   4 57999999999999998743 4 999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-42  Score=305.00  Aligned_cols=297  Identities=24%  Similarity=0.275  Sum_probs=239.2

Q ss_pred             ccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            2 IELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         2 ~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      +|+|.|+| +++||+|||.++++|++|+........  ..+|.++|||++|+|+++|+++++|++||+|++.+.      
T Consensus        15 ~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c   92 (347)
T PRK10309         15 AESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTC   92 (347)
T ss_pred             EECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCC
Confidence            57888987 589999999999999999875432111  135789999999999999999999999999998641      


Q ss_pred             --------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           75 --------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        75 --------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                                          ..|+|++|+.++++.++++|+++++++++++. +..++|+++ +.+.++++++|+|+|+ 
T Consensus        93 ~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~-  169 (347)
T PRK10309         93 PECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGA-  169 (347)
T ss_pred             cchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECC-
Confidence                                15899999999999999999999999999874 466688886 4478999999999986 


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCc-EEEecCCCc-cHHH
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPA-LGFNCVGGN-SASK  212 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d-~v~d~~g~~-~~~~  212 (314)
                      |++|++++|+|+.+|++++++++   .++++++.++++|+++++++++...+++.+++.+.+ +| ++|||+|.+ .+..
T Consensus       170 g~vG~~~~~~a~~~G~~~v~~~~---~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~-~d~~v~d~~G~~~~~~~  245 (347)
T PRK10309        170 GTIGLLAIQCAVALGAKSVTAID---INSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELR-FDQLILETAGVPQTVEL  245 (347)
T ss_pred             CHHHHHHHHHHHHcCCCeEEEEC---CCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCC-CCeEEEECCCCHHHHHH
Confidence            99999999999999998544443   278888899999999999887655566777777665 88 999999985 5589


Q ss_pred             HHHhcccCCEEEEEcCCCCCCcccc---cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---cce
Q 021311          213 VLKFLSQGGTMVTYGGMSKKPITVS---TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---DME  286 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~~  286 (314)
                      ++++++++|+++.+|.... ..+++   ...++.+++++.|++.+....     ..++.++++++++++|.+++   .++
T Consensus       246 ~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~i~~  319 (347)
T PRK10309        246 AIEIAGPRAQLALVGTLHH-DLHLTSATFGKILRKELTVIGSWMNYSSP-----WPGQEWETASRLLTERKLSLEPLIAH  319 (347)
T ss_pred             HHHHhhcCCEEEEEccCCC-CcccChhhhhHHhhcCcEEEEEeccccCC-----cchhHHHHHHHHHHcCCCCchhheEE
Confidence            9999999999999996543 22232   234667899999986532100     01245778999999999864   257


Q ss_pred             eeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          287 LVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       287 ~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .|+|+|+++||+.+.+++..| |+|+++
T Consensus       320 ~~~l~~~~~A~~~~~~~~~~g-Kvvv~~  346 (347)
T PRK10309        320 RGSFESFAQAVRDLAGNPMPG-KVLLQI  346 (347)
T ss_pred             EeeHHHHHHHHHHHhcCCcce-EEEEeC
Confidence            899999999999999988777 999875

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=1.8e-42  Score=303.96  Aligned_cols=298  Identities=22%  Similarity=0.251  Sum_probs=233.6

Q ss_pred             ccCCCCCCC-CCcEEEEEEeecCChhhhhhhccCC--CCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCc
Q 021311            2 IELPPVEVK-ENDVCVKMLAAPINPSDINRIEGVY--PVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGT   78 (314)
Q Consensus         2 ~~~~~p~~~-~~eV~v~v~~~~i~~~D~~~~~~~~--~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~   78 (314)
                      +|.+.|+|+ ++||+|||.|+|||+.|........  .....+|.++|||++|+|+++|+++++|++||+|+++.   ++
T Consensus        26 ~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~  102 (345)
T cd08293          26 EECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN---WP  102 (345)
T ss_pred             EeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC---CC
Confidence            578888875 9999999999999999965433211  11124678999999999999999999999999999863   68


Q ss_pred             ccceEeeeccceEEcCCCCCHH----HhhcccccHHHHHHHHHHhhcCCCC--CEEEEcCCCcHHHHHHHHHHHHcCC-c
Q 021311           79 WQSYVVKDQSVWHKVSKDSPME----YAATIIVNPLTALRMLEDFTTLNSG--DSIVQNGATSIVGQCIIQIARHRGI-H  151 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~p~~~~~~----~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~g~~g~~G~~a~~la~~~g~-~  151 (314)
                      |+||++++++.++++|+++++.    .+++++.+++|||+++.+.++++++  ++|||+|++|++|++++|+|+.+|+ +
T Consensus       103 ~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~  182 (345)
T cd08293         103 WQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSR  182 (345)
T ss_pred             ceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCE
Confidence            9999999999999999985432    2456677899999999887888877  9999999999999999999999999 6


Q ss_pred             EEEEecCCCCcHHHHHHHHh-CCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          152 SINIIRDRAGSDEAKEKLKG-LGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       152 vi~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      ++++++    ++++.+.+++ +|+++++++++.. .+.++++++ .| +|++|||+|+..+..++++|+++|+++.+|..
T Consensus       183 Vi~~~~----s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~-~g-vd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  256 (345)
T cd08293         183 VVGICG----SDEKCQLLKSELGFDAAINYKTDNVAERLRELCP-EG-VDVYFDNVGGEISDTVISQMNENSHIILCGQI  256 (345)
T ss_pred             EEEEcC----CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCC-CC-ceEEEECCCcHHHHHHHHHhccCCEEEEEeee
Confidence            887773    6778888876 9999999987644 466777765 44 99999999998888999999999999999843


Q ss_pred             CCC--Cccccc------cc-ceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce-eeccccHHHHHHH
Q 021311          230 SKK--PITVST------SA-FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME-LVPFNNFQTALSK  299 (314)
Q Consensus       230 ~~~--~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~a~~~  299 (314)
                      ...  +.....      .. ...++++..++....     .+....+.++.+++++.+|++++... .++++++++||+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~  331 (345)
T cd08293         257 SQYNKDVPYPPPLPEATEAILKERNITRERFLVLN-----YKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQS  331 (345)
T ss_pred             ecccCccCccccccchhHHHhhhcceEEEEEEeec-----cHhHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHH
Confidence            221  111111      01 122344444433211     13345677888999999999987643 4699999999999


Q ss_pred             HhccCCCCCceEeeC
Q 021311          300 ALGLHGSQPKQVIKF  314 (314)
Q Consensus       300 ~~~~~~~~~k~vi~~  314 (314)
                      +.+++..| |+|+++
T Consensus       332 ~~~~~~~g-kvvl~~  345 (345)
T cd08293         332 MMNGGNIG-KQIVKV  345 (345)
T ss_pred             HhcCCCCC-eEEEEC
Confidence            99988777 999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.1e-42  Score=302.87  Aligned_cols=296  Identities=25%  Similarity=0.271  Sum_probs=240.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCc-cCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPA-VGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~-~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      ++.+.|.+.+++|+|||.++|||++|++.+.+..+.. ..|. ++|||++|+|+++| .++.+++||||.+.+..     
T Consensus        16 ~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg~C   93 (350)
T COG1063          16 EEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHC   93 (350)
T ss_pred             ccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEec-cccCCCCCCEEEECCCcCCCCC
Confidence            4555566899999999999999999999999976543 3344 99999999999999 77889999999887531     


Q ss_pred             --------------------------CCcccceEeeeccceEE-cCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEE
Q 021311           76 --------------------------SGTWQSYVVKDQSVWHK-VSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSI  128 (314)
Q Consensus        76 --------------------------~g~~~~~~~~~~~~~~~-~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~v  128 (314)
                                                +|+|+||+++|.+++++ +|++++.+.+++ ..++.++|++........++.+|
T Consensus        94 ~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~~~~aal-~epla~~~~~~a~~~~~~~~~~V  172 (350)
T COG1063          94 RYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAAL-TEPLATAYHGHAERAAVRPGGTV  172 (350)
T ss_pred             hhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCChhhhhh-cChhhhhhhhhhhccCCCCCCEE
Confidence                                      48999999999765555 578885555554 44999998884444556666699


Q ss_pred             EEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCcEEEecCh-hhHHHHHHHhcCCCCCcEEEecCC
Q 021311          129 VQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEVFTESQ-LEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       129 lI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~-~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|+|+ |++|++++++++.+|+..+++++.   +++|++.+++ .+++.+++... .....+.+.+++.| +|++|||+|
T Consensus       173 ~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~---~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g-~D~vie~~G  247 (350)
T COG1063         173 VVVGA-GPIGLLAIALAKLLGASVVIVVDR---SPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRG-ADVVIEAVG  247 (350)
T ss_pred             EEECC-CHHHHHHHHHHHHcCCceEEEeCC---CHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCC-CCEEEECCC
Confidence            99999 999999999999999999988875   8999999988 77777776655 34466888888877 999999999


Q ss_pred             Ccc-HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-
Q 021311          207 GNS-ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-  284 (314)
Q Consensus       207 ~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-  284 (314)
                      ... +..+++.++++|+++.+|........++...++.+++++.|++...         .+..++.+++++.+|++.+. 
T Consensus       248 ~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~---------~~~~~~~~~~ll~~g~i~~~~  318 (350)
T COG1063         248 SPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPS---------GREDFERALDLLASGKIDPEK  318 (350)
T ss_pred             CHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCC---------CcccHHHHHHHHHcCCCChhH
Confidence            765 4899999999999999996654433566778889999999984311         12457889999999999986 


Q ss_pred             --ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 --MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 --~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                        ++.++++++++||+.+.+++....|+++++
T Consensus       319 lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         319 LITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             ceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence              678999999999999999765445999875

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=3.9e-42  Score=300.69  Aligned_cols=294  Identities=23%  Similarity=0.272  Sum_probs=241.0

Q ss_pred             CCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcce--EEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            5 PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEG--VGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         5 ~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~--~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      +.|+|+++||||||.|+++|+.|+....|..+.....|.++|+++  .|++..+|+.++.|++||+|+++    |+|+||
T Consensus        31 ~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~----g~~aey  106 (338)
T cd08295          31 KVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF----TGWEEY  106 (338)
T ss_pred             CCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec----CCceeE
Confidence            348899999999999999999999988885432124578889754  45666678889999999999976    689999


Q ss_pred             Eeeec-cceEEcC-CCCCHH-HhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311           83 VVKDQ-SVWHKVS-KDSPME-YAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus        83 ~~~~~-~~~~~~p-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      +++++ ..++++| +++++. +++.+++++.|||+++.+.+++++|++|||+|++|++|++++|+|+.+|++++++++  
T Consensus       107 ~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~--  184 (338)
T cd08295         107 SLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG--  184 (338)
T ss_pred             EEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC--
Confidence            99999 7999995 678887 789999999999999988889999999999999999999999999999999888774  


Q ss_pred             CCcHHHHHHHHh-CCCcEEEecCh--hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcc-
Q 021311          160 AGSDEAKEKLKG-LGADEVFTESQ--LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT-  235 (314)
Q Consensus       160 ~~~~~~~~~~~~-lg~~~~~~~~~--~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-  235 (314)
                        ++++.+.+++ +|+++++++.+  ...+.+++.++ . ++|++||++|+..+..++++++++|+++.+|........ 
T Consensus       185 --~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~-~-gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~  260 (338)
T cd08295         185 --SDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFP-N-GIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQYNLEW  260 (338)
T ss_pred             --CHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCC-C-CcEEEEECCCHHHHHHHHHHhccCcEEEEecccccCCCCC
Confidence              6888888988 99999998753  33455666664 4 499999999998789999999999999999864432211 


Q ss_pred             ----cccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCce
Q 021311          236 ----VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQ  310 (314)
Q Consensus       236 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~  310 (314)
                          .+....+.+++++.++....+     .....+.++.+++++.+|++++.. ..|+++++++|++.+.+++..| |+
T Consensus       261 ~~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~G-kv  334 (338)
T cd08295         261 PEGVRNLLNIIYKRVKIQGFLVGDY-----LHRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIG-KQ  334 (338)
T ss_pred             CCCccCHHHHhhccceeeEEEehhh-----HHHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCc-eE
Confidence                223445567788887655332     223456788999999999998764 4699999999999999998888 99


Q ss_pred             EeeC
Q 021311          311 VIKF  314 (314)
Q Consensus       311 vi~~  314 (314)
                      |+++
T Consensus       335 Vl~~  338 (338)
T cd08295         335 VVKV  338 (338)
T ss_pred             EEEC
Confidence            9875

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=1.2e-42  Score=299.50  Aligned_cols=279  Identities=18%  Similarity=0.193  Sum_probs=223.5

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCC-hhhhhhhccCCCCC--CCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC---
Q 021311            1 MIELPPVEVKENDVCVKMLAAPIN-PSDINRIEGVYPVR--PKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP---   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~-~~D~~~~~~~~~~~--~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~---   74 (314)
                      +++.+.|+|+++||+|||.++||| ++|++.+.|.++..  ..+|.++|||++|+|+++|+++ +|++||+|+....   
T Consensus        15 ~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~~~~c~   93 (308)
T TIGR01202        15 LREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFRPGDRVFVPGSNCY   93 (308)
T ss_pred             EEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCCCCCEEEEeCcccc
Confidence            357889999999999999999996 79999888876543  2579999999999999999998 6999999997421   


Q ss_pred             -----CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC
Q 021311           75 -----SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG  149 (314)
Q Consensus        75 -----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g  149 (314)
                           ..|+|+||++++++.++++|++++++. ++++ ...|||+++.+ . ..++++++|+|+ |++|++++|+|+.+|
T Consensus        94 ~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~-G~vG~~a~q~ak~~G  168 (308)
T TIGR01202        94 EDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGH-GTLGRLLARLTKAAG  168 (308)
T ss_pred             ccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECC-CHHHHHHHHHHHHcC
Confidence                 159999999999999999999999865 4444 57899999966 3 346889999987 999999999999999


Q ss_pred             CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcC
Q 021311          150 IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       150 ~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~  228 (314)
                      ++++++++.   .+++++.+...   .++|+.+.         .+. ++|++|||+|++. +..++++++++|+++.+|.
T Consensus       169 ~~~v~~~~~---~~~rl~~a~~~---~~i~~~~~---------~~~-g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       169 GSPPAVWET---NPRRRDGATGY---EVLDPEKD---------PRR-DYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CceEEEeCC---CHHHHHhhhhc---cccChhhc---------cCC-CCCEEEECCCCHHHHHHHHHhhhcCcEEEEEee
Confidence            998777753   55666555443   44544321         123 4999999999965 5899999999999999996


Q ss_pred             CCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCC
Q 021311          229 MSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHG  305 (314)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~  305 (314)
                      .. .+.+++...++.+++++.++...          ..+.++++++++++|++++.   ++.|+|+|+++||+.+.+++.
T Consensus       233 ~~-~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~  301 (308)
T TIGR01202       233 YT-EPVNFDFVPAFMKEARLRIAAEW----------QPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPD  301 (308)
T ss_pred             cC-CCcccccchhhhcceEEEEeccc----------chhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcC
Confidence            53 34556666677788888876432          12468899999999999863   578999999999999887765


Q ss_pred             CCCceEee
Q 021311          306 SQPKQVIK  313 (314)
Q Consensus       306 ~~~k~vi~  313 (314)
                      .+ |++|+
T Consensus       302 ~~-Kv~~~  308 (308)
T TIGR01202       302 CL-KMILD  308 (308)
T ss_pred             ce-EEEeC
Confidence            55 99874

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=1.5e-41  Score=297.61  Aligned_cols=310  Identities=52%  Similarity=0.834  Sum_probs=260.3

Q ss_pred             ccCCCCCCCC-CcEEEEEEeecCChhhhhhhccCCCCCCC----CCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCC
Q 021311            2 IELPPVEVKE-NDVCVKMLAAPINPSDINRIEGVYPVRPK----VPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSS   76 (314)
Q Consensus         2 ~~~~~p~~~~-~eV~v~v~~~~i~~~D~~~~~~~~~~~~~----~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~   76 (314)
                      ++.|.|+|.+ ++|+||+.++++|+.|.....|..+..+.    +|.++|||++|+|+++|+++..+++||+|++.....
T Consensus        19 ~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (341)
T cd08290          19 ESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPGL   98 (341)
T ss_pred             eecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCCCC
Confidence            5678888887 99999999999999999998887653322    678999999999999999999999999999986335


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      |+|++|+.++.+.++++|+++++++++.+++.+.|||+++.....++++++|||+|++|++|++++++|+..|+++++++
T Consensus        99 g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~  178 (341)
T cd08290          99 GTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVV  178 (341)
T ss_pred             ccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEE
Confidence            89999999999999999999999999999999999999998878899999999999999999999999999999999988


Q ss_pred             cCCCCcHHHHHHHHhCCCcEEEecChh----hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC
Q 021311          157 RDRAGSDEAKEKLKGLGADEVFTESQL----EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~lg~~~~~~~~~~----~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      +.....+++++.++++|++++++++..    ..+.++.++++ + +|++|||+|+......+++++++|+++.+|.....
T Consensus       179 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-~-~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  256 (341)
T cd08290         179 RDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGG-R-PKLALNCVGGKSATELARLLSPGGTMVTYGGMSGQ  256 (341)
T ss_pred             cCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCC-C-ceEEEECcCcHhHHHHHHHhCCCCEEEEEeccCCC
Confidence            642212267788888999999988763    44567777666 4 99999999998888899999999999999854433


Q ss_pred             CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceee---ccccHHHHHHHHhccCCCCC
Q 021311          233 PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELV---PFNNFQTALSKALGLHGSQP  308 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~~  308 (314)
                      +..+.+...+.+++++.+.....+.....+......++.+++++.+|.+.+. ...+   ++++++++++.+.+++..+ 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-  335 (341)
T cd08290         257 PVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGG-  335 (341)
T ss_pred             CcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCCC-
Confidence            4445554567899999998876543212355666788999999999999875 3456   9999999999999988777 


Q ss_pred             ceEeeC
Q 021311          309 KQVIKF  314 (314)
Q Consensus       309 k~vi~~  314 (314)
                      |+|+++
T Consensus       336 k~v~~~  341 (341)
T cd08290         336 KQVLVM  341 (341)
T ss_pred             eEEEeC
Confidence            999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=6e-42  Score=298.03  Aligned_cols=290  Identities=23%  Similarity=0.329  Sum_probs=236.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +|.+.|+|+++||+|||.|+++|+.++.   |.++.. ..|.++|+|++|+|+++|+   .|++||+|+++    ++|++
T Consensus        22 ~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~-~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~----~~~~~   90 (325)
T TIGR02825        22 KTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLK-EGDTMMGQQVARVVESKNV---ALPKGTIVLAS----PGWTS   90 (325)
T ss_pred             EeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCC-CCCcEecceEEEEEEeCCC---CCCCCCEEEEe----cCcee
Confidence            5789999999999999999999997653   333222 3478999999999999774   69999999986    37999


Q ss_pred             eEeeeccceEEc----CCCCCHHHh-hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311           82 YVVKDQSVWHKV----SKDSPMEYA-ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus        82 ~~~~~~~~~~~~----p~~~~~~~a-a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      |++++.+.+.++    |++++++++ +++++++.|||+++.+.+++++|++|||+|++|++|++++|+|+..|+++++++
T Consensus        91 ~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~  170 (325)
T TIGR02825        91 HSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAA  170 (325)
T ss_pred             eEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEe
Confidence            999999988888    999999987 678889999999998889999999999999999999999999999999998887


Q ss_pred             cCCCCcHHHHHHHHhCCCcEEEecChh-hHH-HHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC--
Q 021311          157 RDRAGSDEAKEKLKGLGADEVFTESQL-EVK-NVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK--  232 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~-~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~--  232 (314)
                      +    ++++.+.++++|+++++++++. +.. .++..+ +.+ +|++|||+|++.+..++++++++|+++.+|.....  
T Consensus       171 ~----s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~-~~g-vdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~  244 (325)
T TIGR02825       171 G----SDEKVAYLKKLGFDVAFNYKTVKSLEETLKKAS-PDG-YDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNR  244 (325)
T ss_pred             C----CHHHHHHHHHcCCCEEEeccccccHHHHHHHhC-CCC-eEEEEECCCHHHHHHHHHHhCcCcEEEEecchhhccc
Confidence            4    6788999999999999998763 443 344444 344 99999999998889999999999999999854321  


Q ss_pred             --Ccc--cccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCC
Q 021311          233 --PIT--VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQ  307 (314)
Q Consensus       233 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~  307 (314)
                        ..+  .....++.+++++.++....+    .+....+.++.+++++++|++++.. ..|+++++++|++.+.+++..|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~g  320 (325)
T TIGR02825       245 TGPLPPGPPPEIVIYQELRMEGFIVNRW----QGEVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLG  320 (325)
T ss_pred             CCCCCCCcchHHHhhhcceEeEEEehhh----hhhhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCC
Confidence              111  123345567888888765433    1233456788999999999999864 4699999999999999998887


Q ss_pred             CceEee
Q 021311          308 PKQVIK  313 (314)
Q Consensus       308 ~k~vi~  313 (314)
                       |+|++
T Consensus       321 -kvVv~  325 (325)
T TIGR02825       321 -KTIVK  325 (325)
T ss_pred             -eEEeC
Confidence             99874

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=6.3e-42  Score=301.19  Aligned_cols=291  Identities=22%  Similarity=0.270  Sum_probs=224.4

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCC--CCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP--KVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP----   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~--~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~----   74 (314)
                      ++++|.|+|+++||+|||.++|+|++|++.+.|.++..+  .+|.++|||++|+|+++|++ +.|++||+|+....    
T Consensus        15 ~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~~~~cg   93 (355)
T cd08230          15 VVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPG   93 (355)
T ss_pred             EEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCCCCCEEEeccccCCC
Confidence            367899999999999999999999999999998754322  46889999999999999999 99999999987531    


Q ss_pred             -------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh------hcCC
Q 021311           75 -------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF------TTLN  123 (314)
Q Consensus        75 -------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~------~~~~  123 (314)
                                               .+|+|+||++++.+.++++|++++ + ++++..+..++++++...      .+.+
T Consensus        94 ~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~-~a~~~~p~~~~~~a~~~~~~~~~~~~~~  171 (355)
T cd08230          94 KCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-D-VGVLLEPLSVVEKAIEQAEAVQKRLPTW  171 (355)
T ss_pred             cChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-c-ceeecchHHHHHHHHHHHhhhhhhcccC
Confidence                                     148899999999999999999999 4 344444666655554321      2357


Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +|++|+|+|+ |++|++++|+|+..|++++++.+.. .++++++.++++|+++ +++.+....+ .. . .. ++|++||
T Consensus       172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~-~~~~~~~~~~~~Ga~~-v~~~~~~~~~-~~-~-~~-~~d~vid  244 (355)
T cd08230         172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRD-PPDPKADIVEELGATY-VNSSKTPVAE-VK-L-VG-EFDLIIE  244 (355)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEE-ecCCccchhh-hh-h-cC-CCCEEEE
Confidence            8999999997 9999999999999999887777421 1478888999999987 4555443322 11 1 22 4999999


Q ss_pred             cCCCc-cHHHHHHhcccCCEEEEEcCCCC-CCcccc----cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHH
Q 021311          204 CVGGN-SASKVLKFLSQGGTMVTYGGMSK-KPITVS----TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAR  277 (314)
Q Consensus       204 ~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  277 (314)
                      |+|.+ .+..++++++++|+++.+|.... ...+++    ...++.+++++.|++...      .    +.++.+++++.
T Consensus       245 ~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~------~----~~~~~~~~~l~  314 (355)
T cd08230         245 ATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNAN------K----RHFEQAVEDLA  314 (355)
T ss_pred             CcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCc------h----hhHHHHHHHHH
Confidence            99986 45899999999999999997655 234444    345677999999975422      1    33566777777


Q ss_pred             cCC------cccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          278 EGK------LKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       278 ~g~------~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.      +++. +++|+++|+++||+.+.++.  . |+||+|
T Consensus       315 ~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~-K~v~~~  355 (355)
T cd08230         315 QWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--I-KVVIEW  355 (355)
T ss_pred             hcccccccchHHheeeeecHHHHHHHHHhcccCC--e-EEEeeC
Confidence            766      3333 56899999999999987543  4 999986

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2.3e-41  Score=297.37  Aligned_cols=293  Identities=24%  Similarity=0.335  Sum_probs=242.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCC---CC-------CCCCCccCCcceEEEEEEecCCCCCCCCCCEEee
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVY---PV-------RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP   71 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~---~~-------~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~   71 (314)
                      ++++.|+|+++||+||+.++++|++|+....+..   +.       ...+|.++|||++|+|+++|+++++|++||+|.+
T Consensus        15 ~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~   94 (351)
T cd08233          15 EEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVV   94 (351)
T ss_pred             EeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeCCCCCCCCCCCEEEE
Confidence            5788899999999999999999999988765321   10       1136889999999999999999999999999997


Q ss_pred             CCC---------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCC
Q 021311           72 SPP---------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNS  124 (314)
Q Consensus        72 ~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  124 (314)
                      ...                           .+|+|++|+.++.+.++++|+++++++++.+ .+..|||+++ ..+++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~  172 (351)
T cd08233          95 EPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKP  172 (351)
T ss_pred             CCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCC
Confidence            321                           1489999999999999999999999998876 5788999999 5689999


Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~  202 (314)
                      |++|+|+|+ |.+|++++|+|+.+|+ +++++.    .++++.+.++++|++.++++++. ..+++++.+++.+ +|+++
T Consensus       173 g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~----~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~-~d~vi  246 (351)
T cd08233         173 GDTALVLGA-GPIGLLTILALKAAGASKIIVSE----PSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGG-VDVSF  246 (351)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEC----CCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCC-CCEEE
Confidence            999999986 9999999999999999 555554    26778888889999999998765 3466888877765 99999


Q ss_pred             ecCCC-ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCc
Q 021311          203 NCVGG-NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL  281 (314)
Q Consensus       203 d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  281 (314)
                      ||+|. ..+..++++++++|+++.+|... .+.++++..++.+++++.+.+...          ++.++++++++.+|++
T Consensus       247 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~~~~~g~l  315 (351)
T cd08233         247 DCAGVQATLDTAIDALRPRGTAVNVAIWE-KPISFNPNDLVLKEKTLTGSICYT----------REDFEEVIDLLASGKI  315 (351)
T ss_pred             ECCCCHHHHHHHHHhccCCCEEEEEccCC-CCCccCHHHHHhhCcEEEEEeccC----------cchHHHHHHHHHcCCC
Confidence            99986 45688999999999999999655 445566666778899999876421          2567899999999999


Q ss_pred             ccc---ceeeccccH-HHHHHHHhccCCCCCceEee
Q 021311          282 KYD---MELVPFNNF-QTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       282 ~~~---~~~~~~~~~-~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ++.   ++.|+++|+ ++|++.+.+++..++|+||.
T Consensus       316 ~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         316 DAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             ChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            653   458999996 78999999998763499873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=5.2e-41  Score=296.26  Aligned_cols=295  Identities=24%  Similarity=0.298  Sum_probs=241.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCC------CCCCCEEeeCCC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR------LAPGDWVIPSPP   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~------~~~Gd~V~~~~~   74 (314)
                      +++++.|+|+++||+|||.++++|++|+....|.++. ..+|.++|||++|+|+++|+++++      |++||+|+++..
T Consensus        15 ~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~   93 (361)
T cd08231          15 IREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVG   93 (361)
T ss_pred             EEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEccc
Confidence            3578889999999999999999999999999887653 357899999999999999999986      999999998721


Q ss_pred             ---------------------------------CCCcccceEeeecc-ceEEcCCCCCHHHhhcccccHHHHHHHHHHhh
Q 021311           75 ---------------------------------SSGTWQSYVVKDQS-VWHKVSKDSPMEYAATIIVNPLTALRMLEDFT  120 (314)
Q Consensus        75 ---------------------------------~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~  120 (314)
                                                       ..|+|++|+.++++ .++++|++++++.+++++++++|||+++.+..
T Consensus        94 ~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~  173 (361)
T cd08231          94 APCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAG  173 (361)
T ss_pred             CCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhcc
Confidence                                             24899999999986 79999999999999999899999999998877


Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH----HHHHHHhcCC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV----KNVKGLLANL  195 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~----~~i~~~~~~~  195 (314)
                      ..+++++|||+|+ |.+|++++++|+.+|+ +++++.+    ++++.+.++++|++.++++++...    ..+++.+++.
T Consensus       174 ~~~~g~~vlI~g~-g~vG~~~~~lak~~G~~~v~~~~~----~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~  248 (361)
T cd08231         174 PVGAGDTVVVQGA-GPLGLYAVAAAKLAGARRVIVIDG----SPERLELAREFGADATIDIDELPDPQRRAIVRDITGGR  248 (361)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC----CHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCC
Confidence            7779999999986 9999999999999999 7777763    678888889999999988765322    4577777776


Q ss_pred             CCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHH
Q 021311          196 PEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLL  273 (314)
Q Consensus       196 g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (314)
                      + +|++|||+|+. ....++++++++|+++.+|.... ...++....++.+++++.+++..+      +    +.+++++
T Consensus       249 ~-~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~  317 (361)
T cd08231         249 G-ADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYD------P----SHLYRAV  317 (361)
T ss_pred             C-CcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCC------c----hhHHHHH
Confidence            6 99999999874 45889999999999999996542 223444445677899988876432      2    2355666


Q ss_pred             HHHHcC--Ccc--cc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          274 CLAREG--KLK--YD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       274 ~~l~~g--~~~--~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++.++  .+.  +. ++.|+++++++||+.+.+++. + |+||++
T Consensus       318 ~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~-~-k~vi~~  361 (361)
T cd08231         318 RFLERTQDRFPFAELVTHRYPLEDINEALELAESGTA-L-KVVIDP  361 (361)
T ss_pred             HHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCc-e-EEEeCC
Confidence            777666  333  22 567999999999999988763 4 999874

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=2.2e-41  Score=295.63  Aligned_cols=281  Identities=19%  Similarity=0.197  Sum_probs=215.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC---CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC---
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV---RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP---   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~---~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~---   74 (314)
                      ++|+|.|+ +++||+|||.++|||++|++.+.|.+..   ...+|.++|||++|+|+++|..  .|++||+|...+.   
T Consensus        16 ~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~vGdrV~~~~~~~~   92 (341)
T cd08237          16 VTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYKVGTKVVMVPNTPV   92 (341)
T ss_pred             EeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccCCCCEEEECCCCCc
Confidence            35788885 9999999999999999999999987532   1257999999999999998764  7999999987531   


Q ss_pred             --------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh--hcCCCCCEEEEcC
Q 021311           75 --------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF--TTLNSGDSIVQNG  132 (314)
Q Consensus        75 --------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlI~g  132 (314)
                                          .+|+|+||+++++++++++|+++++++||++. +++++|+++.+.  +.+++|++|||.|
T Consensus        93 ~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G  171 (341)
T cd08237          93 EKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWG  171 (341)
T ss_pred             hhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEEC
Confidence                                14889999999999999999999999887654 888999998643  4578999999999


Q ss_pred             CCcHHHHHHHHHHHH-cCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCc--
Q 021311          133 ATSIVGQCIIQIARH-RGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN--  208 (314)
Q Consensus       133 ~~g~~G~~a~~la~~-~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~--  208 (314)
                      + |++|++++|+++. .|+ +++++..    ++++++.++.+++++.++   .       ...+.+ +|++|||+|+.  
T Consensus       172 ~-G~vGl~~~~~a~~~~g~~~vi~~~~----~~~k~~~a~~~~~~~~~~---~-------~~~~~g-~d~viD~~G~~~~  235 (341)
T cd08237         172 D-GNLGYITALLLKQIYPESKLVVFGK----HQEKLDLFSFADETYLID---D-------IPEDLA-VDHAFECVGGRGS  235 (341)
T ss_pred             C-CHHHHHHHHHHHHhcCCCcEEEEeC----cHhHHHHHhhcCceeehh---h-------hhhccC-CcEEEECCCCCcc
Confidence            7 9999999999986 565 5555552    677888888766654331   1       111223 99999999963  


Q ss_pred             --cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcC-----Cc
Q 021311          209 --SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG-----KL  281 (314)
Q Consensus       209 --~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-----~~  281 (314)
                        .+..++++++++|+++.+|.. ..+.+++...++.+++++.|+....          .+.++++++++.++     .+
T Consensus       236 ~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~k~~~i~g~~~~~----------~~~~~~~~~~~~~~~~~~~~l  304 (341)
T cd08237         236 QSAINQIIDYIRPQGTIGLMGVS-EYPVPINTRMVLEKGLTLVGSSRST----------REDFERAVELLSRNPEVAEYL  304 (341)
T ss_pred             HHHHHHHHHhCcCCcEEEEEeec-CCCcccCHHHHhhCceEEEEecccC----------HHHHHHHHHHHHhCCcccCCh
Confidence              358899999999999999954 3344566666778999999875421          14577889999998     34


Q ss_pred             ccc-ceeeccc---cHHHHHHHHhccCCCCCceEeeC
Q 021311          282 KYD-MELVPFN---NFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       282 ~~~-~~~~~~~---~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++. ++.|+++   ++.++|+.+.++ ..| |+||++
T Consensus       305 ~~~i~~~~~l~~l~~~~~a~~~~~~~-~~g-Kvvi~~  339 (341)
T cd08237         305 RKLVGGVFPVRSINDIHRAFESDLTN-SWG-KTVMEW  339 (341)
T ss_pred             HHHhccccccccHHHHHHHHHHHhhc-Ccc-eEEEEe
Confidence            443 4679985   555555555543 456 999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=5.7e-41  Score=299.85  Aligned_cols=296  Identities=15%  Similarity=0.122  Sum_probs=232.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhh-ccCC-CC----CCCCCccCCcceEEEEEEecCCCC-CCCCCCEEeeCC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRI-EGVY-PV----RPKVPAVGGYEGVGEVYSVGSAVT-RLAPGDWVIPSP   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~-~~~~-~~----~~~~p~~~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~~   73 (314)
                      ++++|.|+|+++||+|||.++|+|++|++.+ .+.. +.    ...+|.++|||++|+|+++|++|+ .|++||+|++.+
T Consensus        16 ~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~   95 (410)
T cd08238          16 LEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQP   95 (410)
T ss_pred             EEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCCccCCCCCCCEEEEcC
Confidence            3678999999999999999999999999976 4532 11    013688999999999999999998 699999998853


Q ss_pred             C---------------CCCcccceEeeecc----ceEEcCCCCCHHHhhcccccHH---HHHHHH--------HHhhcCC
Q 021311           74 P---------------SSGTWQSYVVKDQS----VWHKVSKDSPMEYAATIIVNPL---TALRML--------EDFTTLN  123 (314)
Q Consensus        74 ~---------------~~g~~~~~~~~~~~----~~~~~p~~~~~~~aa~~~~~~~---ta~~~l--------~~~~~~~  123 (314)
                      .               .+|+|+||++++++    .++++|+++++++++.+. ++.   +++.++        .+.++++
T Consensus        96 ~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~e-pl~~~~~~~~a~~~~~~~~~~~~~~~~  174 (410)
T cd08238          96 ALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVE-PLSCVIGAYTANYHLQPGEYRHRMGIK  174 (410)
T ss_pred             CcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcc-hHHHHHHHhhhcccccccchhhhcCCC
Confidence            1               15899999999987    689999999999988652 222   233332        3457889


Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC---cEEEEecCCCCcHHHHHHHHhC--------CCc-EEEecCh--hhHHHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI---HSINIIRDRAGSDEAKEKLKGL--------GAD-EVFTESQ--LEVKNVK  189 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~---~vi~~~~~~~~~~~~~~~~~~l--------g~~-~~~~~~~--~~~~~i~  189 (314)
                      +|++|+|+|++|++|++++|+|+.+|+   +++++.    .++++++.++++        |++ .++++.+  ...+.++
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~----~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD----VNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc----CCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHH
Confidence            999999999889999999999999864   565555    378888899887        666 5677653  3446678


Q ss_pred             HHhcCCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEEcCCC-CC-CcccccccceecceEEEEEechhhccccCHHHHH
Q 021311          190 GLLANLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTYGGMS-KK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR  266 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (314)
                      +++++.+ +|++||++|. ..+..++++++++|+++.++... .. ..+++...++.+++++.|++...          .
T Consensus       251 ~~t~g~g-~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~  319 (410)
T cd08238         251 ELTGGQG-FDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGN----------T  319 (410)
T ss_pred             HHhCCCC-CCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCC----------H
Confidence            8887766 9999999986 44588999999999888775432 21 23556667788999999976432          2


Q ss_pred             HHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          267 NMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       267 ~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.++++++++++|++++.   ++.|+|+++++||+.+. ++..| |+|+.+
T Consensus       320 ~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~g-Kvvl~~  368 (410)
T cd08238         320 DDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGG-KKLIYT  368 (410)
T ss_pred             HHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCc-eEEEEC
Confidence            457889999999999974   57899999999999999 66666 999863

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=9.6e-41  Score=291.14  Aligned_cols=290  Identities=25%  Similarity=0.315  Sum_probs=237.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      ++++.|+|+++||+|||.+++||+.|......  +  ..+|.++|+|++|+|++   .++.|++||+|+++    ++|++
T Consensus        24 ~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~----~~~~~   92 (329)
T cd08294          24 VEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---KNSKFPVGTIVVAS----FGWRT   92 (329)
T ss_pred             EecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---CCCCCCCCCEEEee----CCeee
Confidence            57899999999999999999999987653211  1  14588999999999985   45689999999975    47999


Q ss_pred             eEeeecc---ceEEcCCCCC-----HHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           82 YVVKDQS---VWHKVSKDSP-----MEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        82 ~~~~~~~---~~~~~p~~~~-----~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                      |++++.+   .++++|++++     ...+++++.+++|||+++.+.+++++|++|||+|++|++|++++|+|+.+|++++
T Consensus        93 ~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi  172 (329)
T cd08294          93 HTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVI  172 (329)
T ss_pred             EEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence            9999999   9999999998     2333467889999999998889999999999999999999999999999999988


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ++++    ++++.+.++++|+++++++++.. .+++++.++ . ++|++||++|++....++++++++|+++.+|.....
T Consensus       173 ~~~~----s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~-~-gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~~~~  246 (329)
T cd08294         173 GCAG----SDDKVAWLKELGFDAVFNYKTVSLEEALKEAAP-D-GIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTY  246 (329)
T ss_pred             EEeC----CHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCC-C-CcEEEEECCCHHHHHHHHHhhccCCEEEEEcchhcc
Confidence            8874    77889999999999999987654 456776665 4 499999999998889999999999999999853221


Q ss_pred             Cc------ccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCC
Q 021311          233 PI------TVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHG  305 (314)
Q Consensus       233 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~  305 (314)
                      ..      .......+.+++++.+++...+     .....+.++.+++++.+|++++. ...|+++++++|++.+.+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~  321 (329)
T cd08294         247 NDKEPKKGPYVQETIIFKQLKMEGFIVYRW-----QDRWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGEN  321 (329)
T ss_pred             CCCCCCcCcccHHHHhhhcceEEEEEhhhh-----HHHHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCC
Confidence            11      1222345567888888765332     13445678899999999999875 356999999999999999988


Q ss_pred             CCCceEeeC
Q 021311          306 SQPKQVIKF  314 (314)
Q Consensus       306 ~~~k~vi~~  314 (314)
                      .| |+|+++
T Consensus       322 ~g-kvvv~~  329 (329)
T cd08294         322 TG-KAIVKV  329 (329)
T ss_pred             CC-eEEEeC
Confidence            87 999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=3.5e-40  Score=286.85  Aligned_cols=305  Identities=39%  Similarity=0.626  Sum_probs=261.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      ++.+.|++.+++|+||+.++++|+.|...+.+.++..+.+|..+|+|++|+|+++|++++.+++||+|++... .|+|++
T Consensus        17 ~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-~g~~~~   95 (323)
T cd05282          17 VSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG-EGTWQE   95 (323)
T ss_pred             EeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC-CCccee
Confidence            4567888999999999999999999999888776544456789999999999999999999999999999853 389999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |+.++.+.++++|+++++.+++.++..+.+||+++...+.+.+++++||+|++|.+|++++++|+.+|++++++++    
T Consensus        96 ~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~----  171 (323)
T cd05282          96 YVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVR----  171 (323)
T ss_pred             EEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec----
Confidence            9999999999999999999999999999999999988888999999999999999999999999999999988885    


Q ss_pred             cHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ++++++.++++|.++++++++. ....+++.+++.+ +|+++||+|+......+++++++|+++.+|........++...
T Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  250 (323)
T cd05282         172 RDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAG-ARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRSV  250 (323)
T ss_pred             ChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCC-ceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCCCCCCCHHH
Confidence            5677888889999999988764 4466787877776 9999999999888888999999999999986544333344444


Q ss_pred             ceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      +..+++++.+..+..+.....+....+.++.+++++.++.+.+. ++.|++++++++|+.+.+++..+ |+|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-kvv~~  323 (323)
T cd05282         251 FIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGG-KVLLT  323 (323)
T ss_pred             HhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCc-eEeeC
Confidence            44589999998876654322567778889999999999998865 57899999999999999988777 88874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=2e-40  Score=290.38  Aligned_cols=294  Identities=27%  Similarity=0.328  Sum_probs=249.1

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      ++.+.|++.+++|+||+.++++|++|+....+.++.  ...+|.++|+|++|+|+++|+++..+++||+|+++..     
T Consensus        16 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   95 (340)
T cd05284          16 EDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGT   95 (340)
T ss_pred             EeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCC
Confidence            467888899999999999999999999998887652  3356889999999999999999999999999998641     


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh-hcCCCCCEEEEcC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF-TTLNSGDSIVQNG  132 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~g  132 (314)
                                           ..|+|++|+.++++.++++|+++++++++.++..+.|||+++.+. ..+.++++|||+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g  175 (340)
T cd05284          96 CRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIG  175 (340)
T ss_pred             ChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEc
Confidence                                 158999999999999999999999999999999999999999876 4688999999999


Q ss_pred             CCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC-ccH
Q 021311          133 ATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG-NSA  210 (314)
Q Consensus       133 ~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~-~~~  210 (314)
                      + |.+|++++++|+.+| .+++.+++    ++++.+.++++|+++++++++...+++++++++.+ +|+++||+|+ ...
T Consensus       176 ~-~~vg~~~~~~a~~~g~~~v~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~-~dvvld~~g~~~~~  249 (340)
T cd05284         176 V-GGLGHIAVQILRALTPATVIAVDR----SEEALKLAERLGADHVLNASDDVVEEVRELTGGRG-ADAVIDFVGSDETL  249 (340)
T ss_pred             C-cHHHHHHHHHHHHhCCCcEEEEeC----CHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCC-CCEEEEcCCCHHHH
Confidence            6 679999999999999 78887773    67788888999999999988765566877777665 9999999997 556


Q ss_pred             HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeecc
Q 021311          211 SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPF  290 (314)
Q Consensus       211 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  290 (314)
                      ..++++++++|+++.+|....  .++.....+.+++++.+.....          ...++.+++++.+|.+++.++.|++
T Consensus       250 ~~~~~~l~~~g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~g~l~~~~~~~~~  317 (340)
T cd05284         250 ALAAKLLAKGGRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWGT----------RAELVEVVALAESGKVKVEITKFPL  317 (340)
T ss_pred             HHHHHHhhcCCEEEEEcCCCC--CccCHHHhhhcceEEEEEeccc----------HHHHHHHHHHHHhCCCCcceEEEeH
Confidence            899999999999999985432  2333334356888888865421          2457788899999999887788999


Q ss_pred             ccHHHHHHHHhccCCCCCceEeeC
Q 021311          291 NNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       291 ~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++|++.+.+++..+ |+++.+
T Consensus       318 ~~~~~a~~~~~~~~~~g-kvv~~~  340 (340)
T cd05284         318 EDANEALDRLREGRVTG-RAVLVP  340 (340)
T ss_pred             HHHHHHHHHHHcCCccc-eEEecC
Confidence            99999999999988887 998864

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=5.2e-40  Score=286.71  Aligned_cols=290  Identities=21%  Similarity=0.279  Sum_probs=244.1

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      ++++|.|+++++||+||+.++++|++|+..+.|..+.. .+|..+|||++|+|+++|++++++++||+|++.+       
T Consensus        15 ~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~   93 (333)
T cd08296          15 LVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL-SYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGT   93 (333)
T ss_pred             EEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCC-CCCcccCcceeEEEEEECCCCccCCCCCEEEeccccCCCCC
Confidence            35788899999999999999999999999988866432 4588999999999999999999999999998721       


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ...|+|++|+.++.+.++++|+++++++++.++.++.+||+++.. .+++++++|||+| 
T Consensus        94 ~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g-  171 (333)
T cd08296          94 CDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQG-  171 (333)
T ss_pred             ChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEEC-
Confidence                                114899999999999999999999999999999999999999976 5899999999999 


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCC-ccHH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGG-NSAS  211 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~-~~~~  211 (314)
                      +|++|++++++|+.+|++++.+++    ++++++.++++|+++++++.+... +.++.+   . ++|+++|+.|. ....
T Consensus       172 ~g~iG~~~~~~a~~~G~~vi~~~~----~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~---~-~~d~vi~~~g~~~~~~  243 (333)
T cd08296         172 IGGLGHLAVQYAAKMGFRTVAISR----GSDKADLARKLGAHHYIDTSKEDVAEALQEL---G-GAKLILATAPNAKAIS  243 (333)
T ss_pred             CcHHHHHHHHHHHHCCCeEEEEeC----ChHHHHHHHHcCCcEEecCCCccHHHHHHhc---C-CCCEEEECCCchHHHH
Confidence            599999999999999999888774    677888999999999998876433 445544   2 39999999864 5568


Q ss_pred             HHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccc
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFN  291 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  291 (314)
                      .++++++++|+++.+|... ...+++...++.+++++.++....          .+.++.+++++.++.+++.++.|+++
T Consensus       244 ~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~l~~~v~~~~~~  312 (333)
T cd08296         244 ALVGGLAPRGKLLILGAAG-EPVAVSPLQLIMGRKSIHGWPSGT----------ALDSEDTLKFSALHGVRPMVETFPLE  312 (333)
T ss_pred             HHHHHcccCCEEEEEecCC-CCCCcCHHHHhhcccEEEEeCcCC----------HHHHHHHHHHHHhCCCCceEEEEEHH
Confidence            8999999999999999654 334455556668999999976321          13466778888899888767789999


Q ss_pred             cHHHHHHHHhccCCCCCceEee
Q 021311          292 NFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       292 ~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ++.+||+.+.+++..| |+|++
T Consensus       313 ~~~~a~~~~~~~~~~g-k~v~~  333 (333)
T cd08296         313 KANEAYDRMMSGKARF-RVVLT  333 (333)
T ss_pred             HHHHHHHHHHCCCCce-eEEeC
Confidence            9999999999998888 99874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=6.8e-40  Score=288.18  Aligned_cols=292  Identities=25%  Similarity=0.363  Sum_probs=243.7

Q ss_pred             CCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC-------------------CCCCCccCCcceEEEEEEecCCCCCCC
Q 021311            4 LPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-------------------RPKVPAVGGYEGVGEVYSVGSAVTRLA   64 (314)
Q Consensus         4 ~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~-------------------~~~~p~~~G~e~~G~V~~~G~~v~~~~   64 (314)
                      ++.|++.+++|+|||.++++|++|+....|.++.                   ...+|.++|||++|+|+++|++++.|+
T Consensus        21 ~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~  100 (350)
T cd08274          21 VPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTAR  100 (350)
T ss_pred             CCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcccCCcceEEEEEeCCCCCCCC
Confidence            4667789999999999999999999988775431                   235788999999999999999999999


Q ss_pred             CCCEEeeCC------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCC
Q 021311           65 PGDWVIPSP------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGD  126 (314)
Q Consensus        65 ~Gd~V~~~~------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  126 (314)
                      +||+|++..                  ...|+|++|+.++.+.++++|+++++.+++.+++++.|||+++ ..+++++++
T Consensus       101 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~  179 (350)
T cd08274         101 IGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGE  179 (350)
T ss_pred             CCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCC
Confidence            999999842                  1148999999999999999999999999999999999999998 558899999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      ++||+|++|++|++++++|+.+|++++.+++    ++ +++.++++|++.+.+........ ...+.+.+ +|++|||+|
T Consensus       180 ~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~----~~-~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~-~d~vi~~~g  252 (350)
T cd08274         180 TVLVTGASGGVGSALVQLAKRRGAIVIAVAG----AA-KEEAVRALGADTVILRDAPLLAD-AKALGGEP-VDVVADVVG  252 (350)
T ss_pred             EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC----ch-hhHHHHhcCCeEEEeCCCccHHH-HHhhCCCC-CcEEEecCC
Confidence            9999999999999999999999999888873    33 77888889987666655444444 55566655 999999999


Q ss_pred             CccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-c
Q 021311          207 GNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-M  285 (314)
Q Consensus       207 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~  285 (314)
                      +..+..++++++++|+++.+|........++...++.+++++.++....          .+.++.+++++.++++.+. +
T Consensus       253 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~l~~~~~  322 (350)
T cd08274         253 GPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGT----------REVFRRLVRYIEEGEIRPVVA  322 (350)
T ss_pred             HHHHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCC----------HHHHHHHHHHHHCCCcccccc
Confidence            9888999999999999999985533324455556677889998876521          3567889999999998764 5


Q ss_pred             eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          286 ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       286 ~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.+++++++++++.+..++..+ |+|+++
T Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~-kvvi~~  350 (350)
T cd08274         323 KTFPLSEIREAQAEFLEKRHVG-KLVLVP  350 (350)
T ss_pred             cccCHHHHHHHHHHHhcCCCce-EEEEeC
Confidence            6799999999999999887777 999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=7e-40  Score=292.08  Aligned_cols=295  Identities=21%  Similarity=0.283  Sum_probs=244.8

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC---------CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV---------RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPS   72 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~---------~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~   72 (314)
                      +++|.|.++++||+|++.++++|.+|++...+....         ....+.++|||++|+|+++|++++.+++||+|++.
T Consensus        33 ~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  112 (393)
T cd08246          33 EDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVH  112 (393)
T ss_pred             eecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEeCCCCCcCCCCCEEEEe
Confidence            567888899999999999999999999887664110         00123588999999999999999999999999987


Q ss_pred             CC---------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh--hcCC
Q 021311           73 PP---------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF--TTLN  123 (314)
Q Consensus        73 ~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~  123 (314)
                      ..                           ..|+|++|++++...++++|+++++++++.++.++.|||+++...  ++++
T Consensus       113 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~  192 (393)
T cd08246         113 CSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVK  192 (393)
T ss_pred             ccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCC
Confidence            41                           148999999999999999999999999999999999999998765  6789


Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh--------------------
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL--------------------  183 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~--------------------  183 (314)
                      ++++|+|+|++|++|++++++|+.+|++++++++    ++++++.++++|+++++++++.                    
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~----s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  268 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS----SEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKE  268 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC----CHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhc
Confidence            9999999999999999999999999999888773    7788899999999998886432                    


Q ss_pred             ---hHHHHHHHhcCC-CCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccc
Q 021311          184 ---EVKNVKGLLANL-PEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSS  259 (314)
Q Consensus       184 ---~~~~i~~~~~~~-g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (314)
                         +.+.+++++++. + +|++|||+|+.....++++++++|+++.+|........+....++.++.++.+.+...+   
T Consensus       269 ~~~~~~~v~~l~~~~~g-~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~---  344 (393)
T cd08246         269 ARRFGKAIWDILGGRED-PDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFAND---  344 (393)
T ss_pred             cchHHHHHHHHhCCCCC-CeEEEECCchHhHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcH---
Confidence               235577788876 5 99999999987778999999999999999865443334444556667778877654321   


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhcc-CCCCCceEe
Q 021311          260 EKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGL-HGSQPKQVI  312 (314)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~-~~~~~k~vi  312 (314)
                             +.+..++++++++.+.+. ++.|++++++++++.+.++ +..+ |+++
T Consensus       345 -------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~g-kvvv  391 (393)
T cd08246         345 -------REAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVG-NMAV  391 (393)
T ss_pred             -------HHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhCccccc-eEEE
Confidence                   457788999999998864 5689999999999999988 6777 8876

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.4e-39  Score=284.65  Aligned_cols=300  Identities=22%  Similarity=0.278  Sum_probs=242.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--CCCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--PSSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--~~~g~~   79 (314)
                      +|+|.|+|+++||+|||.++++|+.|.....+..+. ..+|.++|+|++|+|+++|++++.|++||+|+++.  ...|+|
T Consensus        20 ~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~   98 (336)
T TIGR02817        20 IDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSN   98 (336)
T ss_pred             cccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcc
Confidence            578899999999999999999999999888776543 25688999999999999999999999999999874  225899


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCC-----CCEEEEcCCCcHHHHHHHHHHHHc-CCcEE
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNS-----GDSIVQNGATSIVGQCIIQIARHR-GIHSI  153 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlI~g~~g~~G~~a~~la~~~-g~~vi  153 (314)
                      ++|++++++.++++|+++++++++.+++++.|||+++....++++     +++|||+|++|++|++++|+|+.+ |++++
T Consensus        99 ~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi  178 (336)
T TIGR02817        99 AEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVI  178 (336)
T ss_pred             cceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEE
Confidence            999999999999999999999999999999999999988788887     999999999999999999999998 99999


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEEcCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ++++    ++++.+.++++|+++++++.....+.+++. .+.+ +|+++||.++ ......+++++++|+++.++..   
T Consensus       179 ~~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~-~~~~-vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---  249 (336)
T TIGR02817       179 ATAS----RPESQEWVLELGAHHVIDHSKPLKAQLEKL-GLEA-VSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---  249 (336)
T ss_pred             EEcC----cHHHHHHHHHcCCCEEEECCCCHHHHHHHh-cCCC-CCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---
Confidence            9884    677888889999999998665444566663 3344 9999999865 5568999999999999988522   


Q ss_pred             CcccccccceecceEEEEEechhhccccCHHHH--HHHHHHHHHHHHcCCcccc-ceee---ccccHHHHHHHHhccCCC
Q 021311          233 PITVSTSAFIFKDLSLKGFWLQKWLSSEKATEC--RNMIDYLLCLAREGKLKYD-MELV---PFNNFQTALSKALGLHGS  306 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~~~~~-~~~~---~~~~~~~a~~~~~~~~~~  306 (314)
                       ..++...+..+++++.+..+........+...  +..++.+++++.++.+++. ++.+   +++++++|++.+.+++..
T Consensus       250 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  328 (336)
T TIGR02817       250 -AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKAR  328 (336)
T ss_pred             -ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCcc
Confidence             22333334445566665433211011112222  3678999999999998864 3344   578999999999999888


Q ss_pred             CCceEee
Q 021311          307 QPKQVIK  313 (314)
Q Consensus       307 ~~k~vi~  313 (314)
                      + |++++
T Consensus       329 g-kvvv~  334 (336)
T TIGR02817       329 G-KIVLE  334 (336)
T ss_pred             c-eEEEe
Confidence            7 98874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=7.6e-39  Score=278.58  Aligned_cols=301  Identities=22%  Similarity=0.260  Sum_probs=252.4

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-CCCcc
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-SSGTW   79 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~g~~   79 (314)
                      +.+.|.+.+++|+|++.++++|+.|+....|..+.  .+.+|..+|||++|+|+++|+++..+++||+|++... ..|+|
T Consensus        19 ~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~   98 (324)
T cd08244          19 DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGY   98 (324)
T ss_pred             ccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCcee
Confidence            45556688999999999999999999988876532  2356788999999999999999999999999999741 14899


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      ++|+.++.+.++++|+++++++++.+++.+.||| ++...++++++++++|+|++|.+|++++++|+..|++++.+++  
T Consensus        99 ~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~--  175 (324)
T cd08244          99 AELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG--  175 (324)
T ss_pred             eEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC--
Confidence            9999999999999999999999999999999995 5556689999999999999999999999999999999888874  


Q ss_pred             CCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccc
Q 021311          160 AGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVST  238 (314)
Q Consensus       160 ~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  238 (314)
                        ++++.+.++.+|+++++++.+.. .+.+.+.+++++ +|+++||+|+.....++++++++|+++.+|........++.
T Consensus       176 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~  252 (324)
T cd08244         176 --GPAKTALVRALGADVAVDYTRPDWPDQVREALGGGG-VTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGEWTALDE  252 (324)
T ss_pred             --CHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCC-ceEEEECCChHhHHHHHHHhccCcEEEEEecCCCCCCccCH
Confidence              67778888899999888877643 466777777665 99999999998888999999999999999965444334444


Q ss_pred             ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          239 SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ...+.+++++.++.....    .+....+.++.+++++.++.+.+. +..|+++++.++++.+.+++..+ |+++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-kvv~~~  324 (324)
T cd08244         253 DDARRRGVTVVGLLGVQA----ERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHAALEARSTVG-KVLLLP  324 (324)
T ss_pred             HHHhhCCcEEEEeecccC----CHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHHHHHcCCCCc-eEEEeC
Confidence            455678899888776432    234556788899999999998754 46799999999999999988887 999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=3.6e-40  Score=283.25  Aligned_cols=304  Identities=28%  Similarity=0.379  Sum_probs=237.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCC---CCCccCCcce---EEEEEEec-CCCCCCCCCCEEeeCCC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP---KVPAVGGYEG---VGEVYSVG-SAVTRLAPGDWVIPSPP   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~---~~p~~~G~e~---~G~V~~~G-~~v~~~~~Gd~V~~~~~   74 (314)
                      ++.++|+|.+++++|++.++++|+.|+.+..|.+...+   .+|.++++++   +|.+...| ..+..+..||.+.....
T Consensus        23 ~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  102 (347)
T KOG1198|consen   23 EEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFLS  102 (347)
T ss_pred             ecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEeeccC
Confidence            57899999999999999999999999999999887766   6775555444   45555556 34455888888887776


Q ss_pred             CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhh------cCCCCCEEEEcCCCcHHHHHHHHHHHHc
Q 021311           75 SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT------TLNSGDSIVQNGATSIVGQCIIQIARHR  148 (314)
Q Consensus        75 ~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~~~~vlI~g~~g~~G~~a~~la~~~  148 (314)
                       .|+|+||.++|+..++++|++++++++|++|.++.|||.++.+.+      +.++|++|||+|++|++|++++|+|+..
T Consensus       103 -~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~  181 (347)
T KOG1198|consen  103 -SGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHA  181 (347)
T ss_pred             -CCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhc
Confidence             699999999999999999999999999999999999999999988      8999999999999999999999999999


Q ss_pred             CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEc
Q 021311          149 GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       149 g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g  227 (314)
                      ++..++++.    ++++.++++++|+++++||++.+. +++++.+ +. +||+||||+|+......+.++..+|+...++
T Consensus       182 ~~~~v~t~~----s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~-~~-~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~  255 (347)
T KOG1198|consen  182 GAIKVVTAC----SKEKLELVKKLGADEVVDYKDENVVELIKKYT-GK-GVDVVLDCVGGSTLTKSLSCLLKGGGGAYIG  255 (347)
T ss_pred             CCcEEEEEc----ccchHHHHHHcCCcEeecCCCHHHHHHHHhhc-CC-CccEEEECCCCCccccchhhhccCCceEEEE
Confidence            954444442    789999999999999999998765 5677777 44 4999999999998888888888888655555


Q ss_pred             CCCCCCcccccccce--ecceEEEE--EechhhccccCHHHHHHHHHHHHHHHHcCCccccce-eeccccHHHHHHHHhc
Q 021311          228 GMSKKPITVSTSAFI--FKDLSLKG--FWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME-LVPFNNFQTALSKALG  302 (314)
Q Consensus       228 ~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~a~~~~~~  302 (314)
                      .......+.......  .+.+.+..  .+...+ .........+.++.+.+++++|++++.++ .||++++.+||+.+.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~  334 (347)
T KOG1198|consen  256 LVGDELANYKLDDLWQSANGIKLYSLGLKGVNY-RWLYFVPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEK  334 (347)
T ss_pred             eccccccccccccchhhhhhhhheeeeeeccce-eeeeecCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhh
Confidence            333222111111000  11111111  111110 00112233467899999999999999875 7999999999999999


Q ss_pred             cCCCCCceEeeC
Q 021311          303 LHGSQPKQVIKF  314 (314)
Q Consensus       303 ~~~~~~k~vi~~  314 (314)
                      +...| |+++.+
T Consensus       335 ~~~~G-K~vl~~  345 (347)
T KOG1198|consen  335 SHATG-KVVLEK  345 (347)
T ss_pred             cCCcc-eEEEEe
Confidence            88888 999864

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=5.2e-39  Score=280.75  Aligned_cols=305  Identities=26%  Similarity=0.292  Sum_probs=254.6

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      +.+.|++.++||+|||.++++|+.|.....+.++..+..|.++|||++|+|+++|+++..+++||+|+++.. .|+|++|
T Consensus        20 ~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~-~g~~~~~   98 (334)
T PTZ00354         20 ESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMALLP-GGGYAEY   98 (334)
T ss_pred             eCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEecC-CCceeeE
Confidence            556677899999999999999999999888866544456779999999999999999999999999999853 4899999


Q ss_pred             EeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc
Q 021311           83 VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS  162 (314)
Q Consensus        83 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~  162 (314)
                      ++++.+.++++|+++++.+++.++.++.+||+++.+.+.++++++++|+|++|.+|++++++|+..|++++++++    +
T Consensus        99 ~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~----~  174 (334)
T PTZ00354         99 AVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS----S  174 (334)
T ss_pred             EEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC----C
Confidence            999999999999999999999999999999999988889999999999999999999999999999999887663    6


Q ss_pred             HHHHHHHHhCCCcEEEecChh--hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcc-cccc
Q 021311          163 DEAKEKLKGLGADEVFTESQL--EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT-VSTS  239 (314)
Q Consensus       163 ~~~~~~~~~lg~~~~~~~~~~--~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~  239 (314)
                      +++.+.++++|.+++++....  ..+.++..+++.+ +|++|||.++.....++++++++|+++.+|........ +...
T Consensus       175 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~  253 (334)
T PTZ00354        175 EEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKG-VNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLL  253 (334)
T ss_pred             HHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCC-ceEEEECCchHHHHHHHHHhccCCeEEEEecCCCCcccccCHH
Confidence            788888888999989987653  4466777777666 99999999988888999999999999999854443322 4445


Q ss_pred             cceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          240 AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++.+..++.+...........+....+.++.+++++.++.+.+. ++.+++++++++++.+.+++..+ |+|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-kvvv~~  328 (334)
T PTZ00354        254 PLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIG-KVVLTV  328 (334)
T ss_pred             HHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCc-eEEEec
Confidence            555677788887654322212234445667889999999998864 56799999999999999887776 999864

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=8.5e-39  Score=278.39  Aligned_cols=300  Identities=21%  Similarity=0.264  Sum_probs=245.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-----CCC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-----PSS   76 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-----~~~   76 (314)
                      +++|.|.+++++|+|++.++++|++|+....|.++..+.+|..+|||++|+|+++  +++.+++||+|++..     ...
T Consensus        18 ~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~~~~g~~~~   95 (325)
T cd05280          18 RTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVTGYDLGMNTD   95 (325)
T ss_pred             EeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCCCCCEEEEcccccCCCCC
Confidence            5778899999999999999999999999998876544456889999999999998  467899999999863     115


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcC--C-CCCEEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL--N-SGDSIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~--~-~~~~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                      |+|++|+.++++.++++|+++++++++.+++.+.+||+++....+.  . .+++|+|+|++|.+|++++++|+.+|++++
T Consensus        96 g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~  175 (325)
T cd05280          96 GGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVV  175 (325)
T ss_pred             ceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEE
Confidence            8999999999999999999999999999999999999998765433  5 357999999999999999999999999988


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  233 (314)
                      ++++    ++++++.++++|++++++..+.. ..+.....+.+ +|+++||.++.....++++++++|+++.+|.....+
T Consensus       176 ~~~~----~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~-~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~  249 (325)
T cd05280         176 ALTG----KEEQADYLKSLGASEVLDREDLL-DESKKPLLKAR-WAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAGPE  249 (325)
T ss_pred             EEeC----CHHHHHHHHhcCCcEEEcchhHH-HHHHHHhcCCC-ccEEEECCchHHHHHHHHhhcCCCEEEEEecCCCCc
Confidence            7774    67888899999999998876532 23334444444 999999999988899999999999999999654433


Q ss_pred             cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          234 ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ..+.+..++.+++++.+......    .+....+.++.+.+++..+...+.+..|++++++++++.+.+++..| |+|++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g-k~vv~  324 (325)
T cd05280         250 LTTTVLPFILRGVSLLGIDSVNC----PMELRKQVWQKLATEWKPDLLEIVVREISLEELPEAIDRLLAGKHRG-RTVVK  324 (325)
T ss_pred             cccccchheeeeeEEEEEEeecC----chhHHHHHHHHHHHHHhcCCccceeeEecHHHHHHHHHHHhcCCcce-EEEEe
Confidence            34445555578899888765432    12344466777778778885555567899999999999999998887 99987


Q ss_pred             C
Q 021311          314 F  314 (314)
Q Consensus       314 ~  314 (314)
                      +
T Consensus       325 ~  325 (325)
T cd05280         325 I  325 (325)
T ss_pred             C
Confidence            4

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=4.7e-39  Score=280.26  Aligned_cols=304  Identities=23%  Similarity=0.264  Sum_probs=248.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      ++++.|+|+++||+||+.++|+|++|+....+.++. +.+|..+|||++|+|+.+|+.++.+++||+|++.....|+|++
T Consensus        19 ~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~g~~~~   97 (327)
T PRK10754         19 VEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSS   97 (327)
T ss_pred             eeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCCCCcceee
Confidence            567888899999999999999999999988887653 2468899999999999999999999999999876433589999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |+.++.+.++++|+++++++++.++..+.+||+++....++++|++++|+|++|.+|++++++|+.+|++++.+++    
T Consensus        98 ~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~----  173 (327)
T PRK10754         98 VHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG----  173 (327)
T ss_pred             EEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC----
Confidence            9999999999999999999999999999999999988888999999999998899999999999999999988874    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ++++++.++++|++++++.++.. .+.++..+++.+ +|+++||+++......+++++++|+++.+|........+....
T Consensus       174 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  252 (327)
T PRK10754        174 SAQKAQRAKKAGAWQVINYREENIVERVKEITGGKK-VRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGPVTGVNLGI  252 (327)
T ss_pred             CHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCC-eEEEEECCcHHHHHHHHHHhccCCEEEEEccCCCCCCCcCHHH
Confidence            67788888999999998876543 456788887766 9999999998877889999999999999985542212222222


Q ss_pred             ceecceEE-EEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          241 FIFKDLSL-KGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +..++..+ ........  ...+....+.+..+++++.+|.+++.   ++.|+++++.++++.+.+++..+ |+|+..
T Consensus       253 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~  327 (327)
T PRK10754        253 LNQKGSLYVTRPSLQGY--ITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQG-SSLLIP  327 (327)
T ss_pred             HhccCceEEecceeecc--cCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcc-eEEEeC
Confidence            22222111 11111111  12345566778889999999999853   57899999999999999988887 999863

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=7.4e-39  Score=280.57  Aligned_cols=296  Identities=27%  Similarity=0.378  Sum_probs=250.1

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      ++++.|.|.+++|+||+.++++|+.|.....+.++.....|..+|||++|+|+++|++++.+++||+|++.+.       
T Consensus        17 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~~~   96 (341)
T cd08297          17 KDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKC   96 (341)
T ss_pred             EEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCCCCEEEEecCCCCCCCC
Confidence            5677888999999999999999999999988876544456778999999999999999999999999987520       


Q ss_pred             --------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           75 --------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        75 --------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                                          ..|+|++|+.++.+.++++|+++++.+++.++..+.|||+++.. .++++++++||+|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~  175 (341)
T cd08297          97 EYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAG  175 (341)
T ss_pred             ccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCC
Confidence                                15899999999999999999999999999999999999999977 589999999999998


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCC-ccHHH
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGG-NSASK  212 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~-~~~~~  212 (314)
                      +.+|++++++|+.+|++++.+++    ++++.+.++++|++.++++++. ..+.+.+++++.+ +|+++||.++ .....
T Consensus       176 ~~vg~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~-vd~vl~~~~~~~~~~~  250 (341)
T cd08297         176 GGLGHLGVQYAKAMGLRVIAIDV----GDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGG-AHAVVVTAVSAAAYEQ  250 (341)
T ss_pred             chHHHHHHHHHHHCCCeEEEEeC----CHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCC-CCEEEEcCCchHHHHH
Confidence            88999999999999999988884    6778888889999999988764 4466877776665 9999997765 55688


Q ss_pred             HHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeecccc
Q 021311          213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNN  292 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  292 (314)
                      ++++++++|+++.+|.......++.....+.+++++.+..+..          .+.++.+++++.++.+.+.++.|++++
T Consensus       251 ~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~  320 (341)
T cd08297         251 ALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGT----------RQDLQEALEFAARGKVKPHIQVVPLED  320 (341)
T ss_pred             HHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCC----------HHHHHHHHHHHHcCCCcceeEEEcHHH
Confidence            9999999999999985543323444444556888888754321          356788999999999987777899999


Q ss_pred             HHHHHHHHhccCCCCCceEeeC
Q 021311          293 FQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       293 ~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++++.+..++..+ |++++|
T Consensus       321 ~~~a~~~~~~~~~~g-kvvi~~  341 (341)
T cd08297         321 LNEVFEKMEEGKIAG-RVVVDF  341 (341)
T ss_pred             HHHHHHHHHcCCccc-eEEEeC
Confidence            999999999988887 999876

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=4.6e-39  Score=282.85  Aligned_cols=297  Identities=22%  Similarity=0.233  Sum_probs=239.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      ++.+.|.+.++||+|||.++++|++|++...+.++. ..+|.++|||++|+|+++|+.++++++||+|++.+.       
T Consensus        15 ~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~   93 (351)
T cd08285          15 IEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSV   93 (351)
T ss_pred             EECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCH
Confidence            467888899999999999999999999988876543 256899999999999999999999999999998431       


Q ss_pred             ----------------------CCCcccceEeeecc--ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEE
Q 021311           75 ----------------------SSGTWQSYVVKDQS--VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQ  130 (314)
Q Consensus        75 ----------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI  130 (314)
                                            ..|+|++|+.++.+  .++++|+++++++++.++..+.|||+++ ..++++++++|||
T Consensus        94 ~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI  172 (351)
T cd08285          94 AAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAV  172 (351)
T ss_pred             HHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHH-HccCCCCCCEEEE
Confidence                                  25899999999974  8999999999999999999999999996 5588999999999


Q ss_pred             cCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCc-
Q 021311          131 NGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGN-  208 (314)
Q Consensus       131 ~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~-  208 (314)
                      +|+ |++|++++|+|+..|+..+++++.   ++++.+.++++|+++++++.+. ..+++..++.+++ +|+++||+|+. 
T Consensus       173 ~g~-g~iG~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~-~d~vld~~g~~~  247 (351)
T cd08285         173 FGI-GPVGLMAVAGARLRGAGRIIAVGS---RPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKG-VDAVIIAGGGQD  247 (351)
T ss_pred             ECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCC-CcEEEECCCCHH
Confidence            975 999999999999999975555543   6778889999999999988754 3466777776665 99999999975 


Q ss_pred             cHHHHHHhcccCCEEEEEcCCCCC-Cccccc--ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc--
Q 021311          209 SASKVLKFLSQGGTMVTYGGMSKK-PITVST--SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY--  283 (314)
Q Consensus       209 ~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--  283 (314)
                      .+..++++++++|+++.+|..... ...++.  .....+..++.+.+...         ..+.++++++++++|++++  
T Consensus       248 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~g~i~~~~  318 (351)
T cd08285         248 TFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPG---------GRLRMERLASLIEYGRVDPSK  318 (351)
T ss_pred             HHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCC---------ccccHHHHHHHHHcCCCChhh
Confidence            558999999999999999865432 222221  11223445555432211         1245788999999999998  


Q ss_pred             -cce-eeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          284 -DME-LVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       284 -~~~-~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                       .++ .++++++++|++.+.+++....|++|++
T Consensus       319 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         319 LLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             ceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence             244 5999999999999999876434999875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=1.2e-38  Score=277.30  Aligned_cols=300  Identities=22%  Similarity=0.249  Sum_probs=245.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----C
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----S   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~   75 (314)
                      ++++|.|.+++++|+||+.++++|+.|+....|.++....+|..+|||++|+|+.  +++..|++||+|+++..     .
T Consensus        16 ~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~~~~~~   93 (323)
T TIGR02823        16 VETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTGYGLGVSH   93 (323)
T ss_pred             EeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCCCCEEEEccCCCCCCC
Confidence            4688999999999999999999999999988887643335688999999999998  56778999999998741     2


Q ss_pred             CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh--hcCCCCC-EEEEcCCCcHHHHHHHHHHHHcCCcE
Q 021311           76 SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF--TTLNSGD-SIVQNGATSIVGQCIIQIARHRGIHS  152 (314)
Q Consensus        76 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vlI~g~~g~~G~~a~~la~~~g~~v  152 (314)
                      .|+|++|+.++.+.++++|+++++++++.++..+.+||+++...  +++.+++ +++|+|++|.+|++++++|+.+|+++
T Consensus        94 ~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~v  173 (323)
T TIGR02823        94 DGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEV  173 (323)
T ss_pred             CccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeE
Confidence            58999999999999999999999999999999999999887543  3488898 99999999999999999999999999


Q ss_pred             EEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC
Q 021311          153 INIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       153 i~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      +++++    ++++++.++++|++.+++.++... .++.+..+  ++|+++||+|+.....++++++++|+++.+|.....
T Consensus       174 i~~~~----~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  246 (323)
T TIGR02823       174 VASTG----KAEEEDYLKELGASEVIDREDLSP-PGKPLEKE--RWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAGGP  246 (323)
T ss_pred             EEEeC----CHHHHHHHHhcCCcEEEccccHHH-HHHHhcCC--CceEEEECccHHHHHHHHHHhCCCCEEEEEcccCCC
Confidence            88874    567778889999988888765332 34444443  499999999998888999999999999999965443


Q ss_pred             CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          233 PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      ..+.....++.+++++.+.+....    ........++.+.+++..+.+.+.++.++++++++||+.+.+++..+ |+|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~-k~vv  321 (323)
T TIGR02823       247 DLPTTVLPFILRGVSLLGIDSVYC----PMALREAAWQRLATDLKPRNLESITREITLEELPEALEQILAGQHRG-RTVV  321 (323)
T ss_pred             CccccHHHHhhcceEEEEEecccc----CchhHHHHHHHHHHHhhcCCCcCceeeecHHHHHHHHHHHhCCCccc-eEEE
Confidence            333433455578899988765322    11233456777788888898876677899999999999999998887 9998


Q ss_pred             eC
Q 021311          313 KF  314 (314)
Q Consensus       313 ~~  314 (314)
                      ++
T Consensus       322 ~~  323 (323)
T TIGR02823       322 DV  323 (323)
T ss_pred             eC
Confidence            64

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=6.2e-39  Score=283.04  Aligned_cols=295  Identities=25%  Similarity=0.334  Sum_probs=244.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      ++.+.|++.++||+|||.++++|++|+....+.++.  .+|.++|||++|+|+++|+++..+++||+|++..        
T Consensus        18 ~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~   95 (365)
T cd08278          18 EDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFASCGECAN   95 (365)
T ss_pred             EEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCCCEEEEcccCCCCChH
Confidence            577888999999999999999999999999887652  4688999999999999999999999999999521        


Q ss_pred             ----------------------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           74 ----------------------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        74 ----------------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                              ...|+|++|+.++++.++++|++++++.++.+++++.|||
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~  175 (365)
T cd08278          96 CLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGA  175 (365)
T ss_pred             HhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhh
Confidence                                                    0148899999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHh
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLL  192 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~  192 (314)
                      +++.....++++++|||+|+ |++|++++++|+..|++++++++.   ++++.+.++++|++.++++++. ..+.+++.+
T Consensus       176 ~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la~~~G~~~v~~~~~---~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~  251 (365)
T cd08278         176 GAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAAKIAGCTTIIAVDI---VDSRLELAKELGATHVINPKEEDLVAAIREIT  251 (365)
T ss_pred             HHHhhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh
Confidence            99988889999999999976 999999999999999975555543   6788888899999999988764 346677777


Q ss_pred             cCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCC-CCCcccccccceecceEEEEEechhhccccCHHHHHHHHH
Q 021311          193 ANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMS-KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMID  270 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (314)
                       +.+ +|+++||+|.. .+..++++++++|+++.+|... .....++...++.+++++.++.....    .+   .+.++
T Consensus       252 -~~~-~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~  322 (365)
T cd08278         252 -GGG-VDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDS----VP---QEFIP  322 (365)
T ss_pred             -CCC-CcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCc----Ch---HHHHH
Confidence             555 99999999874 4589999999999999999653 22334555555578888888765321    11   35678


Q ss_pred             HHHHHHHcCCccc--cceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          271 YLLCLAREGKLKY--DMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       271 ~~~~~l~~g~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .+++++.++++.+  .+..+++++++++++.+.+++..  |+||+
T Consensus       323 ~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~~--k~~~~  365 (365)
T cd08278         323 RLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKVI--KPVLR  365 (365)
T ss_pred             HHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCce--EEEEC
Confidence            8899999999865  24679999999999999886643  88874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=9.8e-39  Score=283.58  Aligned_cols=296  Identities=22%  Similarity=0.222  Sum_probs=243.1

Q ss_pred             CccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            1 MIELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         1 i~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      +++++.|.| ++++|+||+.++++|++|+..+.|.++.. ++|.++|||++|+|+++|+++.++++||+|++...     
T Consensus        14 ~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~   92 (386)
T cd08283          14 VEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGM-KKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGE   92 (386)
T ss_pred             EEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCC-CCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCC
Confidence            356788888 49999999999999999999999987653 56889999999999999999999999999988531     


Q ss_pred             -----------------------------------------CCCcccceEeeecc--ceEEcCCCCCHHHhhcccccHHH
Q 021311           75 -----------------------------------------SSGTWQSYVVKDQS--VWHKVSKDSPMEYAATIIVNPLT  111 (314)
Q Consensus        75 -----------------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~t  111 (314)
                                                               ..|+|++|++++.+  .++++|+++++++++.++..+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~t  172 (386)
T cd08283          93 CFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPT  172 (386)
T ss_pred             ChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhh
Confidence                                                     14889999999987  89999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh--hHHHH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL--EVKNV  188 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~~~~i  188 (314)
                      ||+++ ..++++++++|||+|+ |.+|++++++|+..|+. ++++..    ++++.+.+++++...++++.+.  ..+.+
T Consensus       173 a~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la~~~g~~~vi~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~l  246 (386)
T cd08283         173 GYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAIDR----VPERLEMARSHLGAETINFEEVDDVVEAL  246 (386)
T ss_pred             hHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC----CHHHHHHHHHcCCcEEEcCCcchHHHHHH
Confidence            99999 6789999999999976 99999999999999985 655553    6888889988844467776653  44667


Q ss_pred             HHHhcCCCCCcEEEecCCCc----------------------cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecce
Q 021311          189 KGLLANLPEPALGFNCVGGN----------------------SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDL  246 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~----------------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  246 (314)
                      +.++.+.+ +|++|||+|++                      ....++++++++|+++.+|........+.....+.+++
T Consensus       247 ~~~~~~~~-~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  325 (386)
T cd08283         247 RELTGGRG-PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGL  325 (386)
T ss_pred             HHHcCCCC-CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCc
Confidence            77777666 99999999864                      34788999999999999986544333344445567888


Q ss_pred             EEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          247 SLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.+....          ..+.++.+++++.++++.+.   ++.|+++++++|++.+.+++...+|+||++
T Consensus       326 ~i~~~~~~----------~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         326 TLRMGQTH----------VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             EEEeccCC----------chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            88886321          23567888999999999863   467999999999999998875545999874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.5e-38  Score=276.61  Aligned_cols=288  Identities=24%  Similarity=0.299  Sum_probs=242.2

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeC---------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPS---------   72 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~---------   72 (314)
                      ++++.|+|+++||+||+.++++|++|++...+.+.. ..+|..+|||++|+|+++|+.++.|++||+|+..         
T Consensus        15 ~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~   93 (337)
T cd05283          15 FTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTC   93 (337)
T ss_pred             EeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCCCCEEEEecCCCCCCCC
Confidence            578899999999999999999999999999887643 3568999999999999999999999999999731         


Q ss_pred             -------------------------CCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCE
Q 021311           73 -------------------------PPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDS  127 (314)
Q Consensus        73 -------------------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  127 (314)
                                               ....|+|++|+.++.+.++++|+++++++++.+.+.+.+||+++.+ ..++++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~  172 (337)
T cd05283          94 EQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR-NGVGPGKR  172 (337)
T ss_pred             ccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHh-cCCCCCCE
Confidence                                     0225899999999999999999999999999999999999999977 56899999


Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      ++|.|+ |.+|++++++|+..|++++++.+    ++++.+.++.+|++.+++.++...  .+. . +. ++|++|||++.
T Consensus       173 vlV~g~-g~vG~~~~~~a~~~G~~v~~~~~----~~~~~~~~~~~g~~~vi~~~~~~~--~~~-~-~~-~~d~v~~~~g~  242 (337)
T cd05283         173 VGVVGI-GGLGHLAVKFAKALGAEVTAFSR----SPSKKEDALKLGADEFIATKDPEA--MKK-A-AG-SLDLIIDTVSA  242 (337)
T ss_pred             EEEECC-cHHHHHHHHHHHHcCCeEEEEcC----CHHHHHHHHHcCCcEEecCcchhh--hhh-c-cC-CceEEEECCCC
Confidence            999875 99999999999999998887774    667788888999999888765432  111 1 23 49999999998


Q ss_pred             cc-HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce
Q 021311          208 NS-ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME  286 (314)
Q Consensus       208 ~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  286 (314)
                      .. ...++++++++|+++.+|..... ..+++..++.+++++.+.....          .+.++.+++++.++++++.++
T Consensus       243 ~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~  311 (337)
T cd05283         243 SHDLDPYLSLLKPGGTLVLVGAPEEP-LPVPPFPLIFGRKSVAGSLIGG----------RKETQEMLDFAAEHGIKPWVE  311 (337)
T ss_pred             cchHHHHHHHhcCCCEEEEEeccCCC-CccCHHHHhcCceEEEEecccC----------HHHHHHHHHHHHhCCCccceE
Confidence            75 68899999999999999865332 2445555567899999876542          145778889999999988778


Q ss_pred             eeccccHHHHHHHHhccCCCCCceEee
Q 021311          287 LVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       287 ~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .++++++++||+.+.+++..| |+|++
T Consensus       312 ~~~~~~~~~a~~~~~~~~~~~-k~v~~  337 (337)
T cd05283         312 VIPMDGINEALERLEKGDVRY-RFVLD  337 (337)
T ss_pred             EEEHHHHHHHHHHHHcCCCcc-eEeeC
Confidence            899999999999999998887 98874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=4.4e-38  Score=274.36  Aligned_cols=296  Identities=27%  Similarity=0.352  Sum_probs=245.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCccc
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      +++++.|.+.++||+|||.++++|+.|+....|.++..+.+|.++|+|++|+|+.+|+.++.+++||+|+++.  .|+|+
T Consensus        20 ~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~--~g~~~   97 (329)
T cd08250          20 IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMS--FGAFA   97 (329)
T ss_pred             EEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCCCCCCCEEEEec--Cccee
Confidence            3577888899999999999999999999988887654346788999999999999999999999999999986  58999


Q ss_pred             ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311           81 SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      +|+.++.+.++++|++  +.+++.++.++.|||+++.+..+++++++++|+|++|.+|++++++|+..|++++.+++   
T Consensus        98 s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---  172 (329)
T cd08250          98 EYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---  172 (329)
T ss_pred             EEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---
Confidence            9999999999999997  35677888899999999988788999999999999999999999999999999988874   


Q ss_pred             CcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC------
Q 021311          161 GSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP------  233 (314)
Q Consensus       161 ~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~------  233 (314)
                       ++++.+.++.+|++.+++.++... +.+....+ .+ +|++|||.|+......+++++++|+++.+|......      
T Consensus       173 -~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~-~~-vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~  249 (329)
T cd08250         173 -SDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYP-KG-VDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPS  249 (329)
T ss_pred             -cHHHHHHHHHcCCceEEeCCCccHHHHHHHhcC-CC-CeEEEECCcHHHHHHHHHHhccCCeEEEEecccCCcccCccc
Confidence             667788888899988887765433 44555443 44 999999999877789999999999999998654321      


Q ss_pred             ----cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCC
Q 021311          234 ----ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGS  306 (314)
Q Consensus       234 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~  306 (314)
                          ..+ ....+.+++++.++....+.     ....+.+.++++++.++.+.+.   ++.++++++++|++.+.+++..
T Consensus       250 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~  323 (329)
T cd08250         250 PVKGATL-PPKLLAKSASVRGFFLPHYA-----KLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNI  323 (329)
T ss_pred             ccccccc-cHHHhhcCceEEEEEhHHHH-----HHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCC
Confidence                111 23446788999988764431     2245678889999999998873   3459999999999999988777


Q ss_pred             CCceEee
Q 021311          307 QPKQVIK  313 (314)
Q Consensus       307 ~~k~vi~  313 (314)
                      + |++++
T Consensus       324 ~-kvvv~  329 (329)
T cd08250         324 G-KVVVE  329 (329)
T ss_pred             c-eEEeC
Confidence            6 98874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=3.6e-38  Score=278.60  Aligned_cols=294  Identities=22%  Similarity=0.273  Sum_probs=236.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|++.++||+|||.++++|++|.+...|.++.  .+|.++|||++|+|+++|++++.+++||+|+++..       
T Consensus        23 ~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~  100 (373)
T cd08299          23 EEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCR  100 (373)
T ss_pred             EEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCccCCCCCEEEECCCCCCCCCh
Confidence            578889999999999999999999999999887632  46889999999999999999999999999987620       


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|+||++++.+.++++|+++++++++++++++.+||+
T Consensus       101 ~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~  180 (373)
T cd08299         101 ACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYG  180 (373)
T ss_pred             hhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCCChHHhheeccchHHHHH
Confidence                                                    1488999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChh---hHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~---~~~~i~~  190 (314)
                      ++.+.++++++++|+|+|+ |++|++++++|+..|+ +++++.+    ++++++.++++|++++++..+.   ..+.+++
T Consensus       181 ~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~----~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~  255 (373)
T cd08299         181 AAVNTAKVTPGSTCAVFGL-GGVGLSAIMGCKAAGASRIIAVDI----NKDKFAKAKELGATECINPQDYKKPIQEVLTE  255 (373)
T ss_pred             HHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC----CHHHHHHHHHcCCceEecccccchhHHHHHHH
Confidence            9888889999999999976 9999999999999999 5766653    6788899999999999987643   3355666


Q ss_pred             HhcCCCCCcEEEecCCCcc-HHHHHHh-cccCCEEEEEcCCCCC-CcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          191 LLANLPEPALGFNCVGGNS-ASKVLKF-LSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~-~~~~~~~-l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      ++. . ++|+++||+|++. ...++.. ++++|+++.+|..... ..++.+.. +.++.++.+++...+..       ++
T Consensus       256 ~~~-~-~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-------~~  325 (373)
T cd08299         256 MTD-G-GVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPML-LLTGRTWKGAVFGGWKS-------KD  325 (373)
T ss_pred             HhC-C-CCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHH-HhcCCeEEEEEecCCcc-------HH
Confidence            666 3 4999999999754 4665665 4689999999965432 23333322 34678888887655421       13


Q ss_pred             HHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .+.++++.+.++.+++.   ++.|+++++.+||+.+.+.+.  .|+++++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~--~k~~~~~  373 (373)
T cd08299         326 SVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS--IRTVLTF  373 (373)
T ss_pred             HHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc--ceEEEeC
Confidence            34556666777765542   568999999999999887653  3888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=3.4e-38  Score=278.32  Aligned_cols=294  Identities=23%  Similarity=0.342  Sum_probs=242.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      ++++.|.+++++|+|++.++++|+.|++...+.++.  .+|.++|||++|+|+++|++++.+++||+|++...       
T Consensus        16 ~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~~~   93 (365)
T cd05279          16 EEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCK   93 (365)
T ss_pred             EEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCCCh
Confidence            577889999999999999999999999998887643  45789999999999999999999999999998631       


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|++|+.++++.++++|+++++++++.+..++.+||+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~  173 (365)
T cd05279          94 QCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYG  173 (365)
T ss_pred             hhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHHHhhHhccchhHHHH
Confidence                                                    1368999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh---hHHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKNVKGL  191 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~---~~~~i~~~  191 (314)
                      ++.+.+++++|++|||+|+ |++|++++++|+.+|++++++++.   ++++.+.++++|++++++.++.   ..+.++++
T Consensus       174 al~~~~~~~~g~~vlI~g~-g~vG~~a~~~a~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~  249 (365)
T cd05279         174 AAVNTAKVTPGSTCAVFGL-GGVGLSVIMGCKAAGASRIIAVDI---NKDKFEKAKQLGATECINPRDQDKPIVEVLTEM  249 (365)
T ss_pred             HHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCeecccccccchHHHHHHHH
Confidence            9888889999999999976 999999999999999986655543   7788888899999999987654   33557777


Q ss_pred             hcCCCCCcEEEecCCC-ccHHHHHHhcc-cCCEEEEEcCCC-CCCcccccccceecceEEEEEechhhccccCHHHHHHH
Q 021311          192 LANLPEPALGFNCVGG-NSASKVLKFLS-QGGTMVTYGGMS-KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNM  268 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~-~~~~~~~~~l~-~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (314)
                      ++ . ++|+++|++|. .....++++++ ++|+++.+|... ....++....+ .++.++.|.++..+.       ..+.
T Consensus       250 ~~-~-~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~-------~~~~  319 (365)
T cd05279         250 TD-G-GVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWK-------SKDS  319 (365)
T ss_pred             hC-C-CCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCc-------hHhH
Confidence            74 4 49999999986 55688999999 999999998543 23344444445 577788887654331       2356


Q ss_pred             HHHHHHHHHcCCccc---cceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          269 IDYLLCLAREGKLKY---DMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       269 ~~~~~~~l~~g~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      +..+++++.++.+.+   .++.++++++++||+.+.+++..  |++++
T Consensus       320 ~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~--~~~~~  365 (365)
T cd05279         320 VPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESI--RTILT  365 (365)
T ss_pred             HHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCce--eeeeC
Confidence            778889999999875   35779999999999999876543  77663

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=3.6e-38  Score=277.14  Aligned_cols=295  Identities=24%  Similarity=0.305  Sum_probs=243.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC-----------CCCCCccCCcceEEEEEEecCCCCCCCCCCEE
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-----------RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWV   69 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~-----------~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V   69 (314)
                      ++++|.|++.++||+|++.++++|++|+..+.+.++.           ...+|..+|+|++|+|+++|++++.+++||+|
T Consensus        15 ~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V   94 (350)
T cd08240          15 EVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKV   94 (350)
T ss_pred             EEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEeeCCCCCCCCCCCEE
Confidence            3578889999999999999999999999998876542           22457889999999999999999999999999


Q ss_pred             eeCCC--------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCC
Q 021311           70 IPSPP--------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLN  123 (314)
Q Consensus        70 ~~~~~--------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~  123 (314)
                      ++++.                          ..|+|++|+.++.+.++++|+++++.+++++.+.+.|||+++.+...+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~  174 (350)
T cd08240          95 LVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLV  174 (350)
T ss_pred             EECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCC
Confidence            98731                          2589999999999999999999999999999999999999998877777


Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v  201 (314)
                      ++++|+|+|+ |++|++++|+|+..|++ ++++.    .++++.+.++++|++.++++++.. .+.+.+..++ + +|++
T Consensus       175 ~~~~vlI~g~-g~vg~~~~~~a~~~G~~~v~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-~d~v  247 (350)
T cd08240         175 ADEPVVIIGA-GGLGLMALALLKALGPANIIVVD----IDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGG-G-VDAV  247 (350)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCCeEEEEe----CCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCC-C-CcEE
Confidence            8999999975 99999999999999995 55554    267888888999998888876543 3567776666 4 9999


Q ss_pred             EecCCC-ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          202 FNCVGG-NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       202 ~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      ||++|. .....++++|+++|+++.+|..... ..+.......+++++.+.+....          +.+..++++++++.
T Consensus       248 id~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~ll~~~~  316 (350)
T cd08240         248 IDFVNNSATASLAFDILAKGGKLVLVGLFGGE-ATLPLPLLPLRALTIQGSYVGSL----------EELRELVALAKAGK  316 (350)
T ss_pred             EECCCCHHHHHHHHHHhhcCCeEEEECCCCCC-CcccHHHHhhcCcEEEEcccCCH----------HHHHHHHHHHHcCC
Confidence            999986 4568999999999999999865432 22222233447888887655321          45778889999999


Q ss_pred             cccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          281 LKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       281 ~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++. +..+++++++++++.+.+++..+ |+++++
T Consensus       317 i~~~~~~~~~~~~~~~a~~~~~~~~~~g-kvvv~~  350 (350)
T cd08240         317 LKPIPLTERPLSDVNDALDDLKAGKVVG-RAVLKP  350 (350)
T ss_pred             CccceeeEEcHHHHHHHHHHHHcCCccc-eEEecC
Confidence            8764 56799999999999999988887 998864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=3.4e-38  Score=277.06  Aligned_cols=294  Identities=25%  Similarity=0.272  Sum_probs=240.6

Q ss_pred             ccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            2 IELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         2 ~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      .++|.|.| .+++|+||+.++++|+.|+....+.++. .++|.++|+|++|+|+++|++++++++||+|++..       
T Consensus        15 ~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~   93 (347)
T cd05278          15 EEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRC   93 (347)
T ss_pred             EEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccccCCCCEEEecCCCCCCCC
Confidence            46788888 8999999999999999999999887764 36689999999999999999999999999999731       


Q ss_pred             ----------------------CCCCcccceEeeecc--ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEE
Q 021311           74 ----------------------PSSGTWQSYVVKDQS--VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIV  129 (314)
Q Consensus        74 ----------------------~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vl  129 (314)
                                            ...|+|++|++++++  .++++|+++++++++.++.++.|||+++ ...+++++++||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~Vl  172 (347)
T cd05278          94 RFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVA  172 (347)
T ss_pred             hhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEE
Confidence                                  125899999999987  8999999999999999999999999998 568899999999


Q ss_pred             EcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCC
Q 021311          130 QNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       130 I~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      |.|+ |.+|++++|+|+.+|+ .++++.    .++++.+.++++|++.++++++.. .+.++..+++.+ +|++|||+++
T Consensus       173 I~g~-g~vg~~~iqlak~~g~~~v~~~~----~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~-~d~vld~~g~  246 (347)
T cd05278         173 VIGA-GPVGLCAVAGARLLGAARIIAVD----SNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRG-VDCVIEAVGF  246 (347)
T ss_pred             EECC-CHHHHHHHHHHHHcCCCEEEEEe----CCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCC-CcEEEEccCC
Confidence            9875 9999999999999997 566664    267778888899999999887653 355777776655 9999999998


Q ss_pred             -ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc--
Q 021311          208 -NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD--  284 (314)
Q Consensus       208 -~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~--  284 (314)
                       ......+++|+++|+++.+|..............+.+++++.+.....          .+.++.+++++.++.+.+.  
T Consensus       247 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~  316 (347)
T cd05278         247 EETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPV----------RARMPELLDLIEEGKIDPSKL  316 (347)
T ss_pred             HHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCc----------hhHHHHHHHHHHcCCCChhHc
Confidence             566889999999999999985433221112223345677777643211          3578889999999999863  


Q ss_pred             -ceeeccccHHHHHHHHhccCC-CCCceEeeC
Q 021311          285 -MELVPFNNFQTALSKALGLHG-SQPKQVIKF  314 (314)
Q Consensus       285 -~~~~~~~~~~~a~~~~~~~~~-~~~k~vi~~  314 (314)
                       +..+++++++++++.+..++. .+ |+|+++
T Consensus       317 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~vv~~  347 (347)
T cd05278         317 ITHRFPLDDILKAYRLFDNKPDGCI-KVVIRP  347 (347)
T ss_pred             EEEEecHHHHHHHHHHHhcCCCCce-EEEecC
Confidence             456999999999999988776 55 998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.8e-38  Score=275.86  Aligned_cols=291  Identities=22%  Similarity=0.228  Sum_probs=232.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      ++++.|+|+++||+||+.++++|++|++.+.+.++.. .+|.++|||++|+|+.+|+++..+++||+|+..+        
T Consensus        15 ~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~   93 (339)
T PRK10083         15 EERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFA-KYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCY   93 (339)
T ss_pred             EeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcC-CCCcccccceEEEEEEECCCCccCCCCCEEEEccccCCCCCc
Confidence            5788899999999999999999999999988876532 5689999999999999999999999999998421        


Q ss_pred             ------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           74 ------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        74 ------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                        ..+|+|++|+.++.+.++++|++++++.++ +..++.++|++. +.+++++|++|+|+|+ |
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~-~~~~~~~g~~vlI~g~-g  170 (339)
T PRK10083         94 PCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT-GRTGPTEQDVALIYGA-G  170 (339)
T ss_pred             cccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH-HhcCCCCCCEEEEECC-C
Confidence                              114899999999999999999999998876 445778888644 5589999999999995 9


Q ss_pred             HHHHHHHHHHHH-cCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCc-cHHH
Q 021311          136 IVGQCIIQIARH-RGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGN-SASK  212 (314)
Q Consensus       136 ~~G~~a~~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~-~~~~  212 (314)
                      ++|++++|+|+. +|++++++++.   ++++.+.++++|+++++++++... +.+..  .+. ++|++|||+|++ ....
T Consensus       171 ~vG~~~~~~a~~~~G~~~v~~~~~---~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~--~g~-~~d~vid~~g~~~~~~~  244 (339)
T PRK10083        171 PVGLTIVQVLKGVYNVKAVIVADR---IDERLALAKESGADWVINNAQEPLGEALEE--KGI-KPTLIIDAACHPSILEE  244 (339)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcC---CHHHHHHHHHhCCcEEecCccccHHHHHhc--CCC-CCCEEEECCCCHHHHHH
Confidence            999999999996 69987766653   788889999999999998876432 33322  122 267999999964 5689


Q ss_pred             HHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---cceeec
Q 021311          213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---DMELVP  289 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~~~~~  289 (314)
                      ++++++++|+++.+|.... ...+....+..+++++.+...           ..+.++.+++++.+|++.+   .++.|+
T Consensus       245 ~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~l~~~~~~~~~~~  312 (339)
T PRK10083        245 AVTLASPAARIVLMGFSSE-PSEIVQQGITGKELSIFSSRL-----------NANKFPVVIDWLSKGLIDPEKLITHTFD  312 (339)
T ss_pred             HHHHhhcCCEEEEEccCCC-CceecHHHHhhcceEEEEEec-----------ChhhHHHHHHHHHcCCCChHHheeeeec
Confidence            9999999999999996542 223333344457777776532           1245788999999999987   357899


Q ss_pred             cccHHHHHHHHhccCCCCCceEeeC
Q 021311          290 FNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++++|++.+.+++....|++++|
T Consensus       313 l~~~~~a~~~~~~~~~~~~kvvv~~  337 (339)
T PRK10083        313 FQHVADAIELFEKDQRHCCKVLLTF  337 (339)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEec
Confidence            9999999999986543323999875

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=5.2e-38  Score=280.14  Aligned_cols=297  Identities=21%  Similarity=0.262  Sum_probs=242.6

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC-------C--CCCC-ccCCcceEEEEEEecCCCCCCCCCCEEee
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-------R--PKVP-AVGGYEGVGEVYSVGSAVTRLAPGDWVIP   71 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~-------~--~~~p-~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~   71 (314)
                      ++++.|.|++++|+||+.++++|..|.+...+....       .  ...| .++|||++|+|+++|++++.+++||+|++
T Consensus        28 ~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~  107 (398)
T TIGR01751        28 EVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVA  107 (398)
T ss_pred             eecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEEEEEEeCCCCCCCCCCCEEEE
Confidence            467888899999999999999999998766553210       0  0123 37999999999999999999999999998


Q ss_pred             CCC---------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHH--hhcC
Q 021311           72 SPP---------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED--FTTL  122 (314)
Q Consensus        72 ~~~---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~  122 (314)
                      ...                           ..|+|++|+.++.+.++++|+++++++++.+...+.+||+++..  .+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~  187 (398)
T TIGR01751       108 SCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATV  187 (398)
T ss_pred             ccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCC
Confidence            641                           24899999999999999999999999999999999999999865  4778


Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-------------------
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-------------------  183 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-------------------  183 (314)
                      .++++++|+|++|.+|++++++|+.+|++++++++    ++++.+.++++|++.++|+++.                   
T Consensus       188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  263 (398)
T TIGR01751       188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVS----SPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTK  263 (398)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcC----CHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhh
Confidence            99999999999999999999999999999887763    6778888999999999986532                   


Q ss_pred             ----hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccc
Q 021311          184 ----EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSS  259 (314)
Q Consensus       184 ----~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (314)
                          +.+.+.+++++.+ +|++|||+|.......+++++++|+++.+|........++...++.++.++.+.....+   
T Consensus       264 ~~~~~~~~~~~~~~~~g-~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  339 (398)
T TIGR01751       264 SFKRFGKRIRELTGGED-PDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANL---  339 (398)
T ss_pred             cchhHHHHHHHHcCCCC-ceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcH---
Confidence                1244666676665 99999999987778899999999999999965544344444455566777776543221   


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          260 EKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                             +.++.++++++++++.+. ++.+++++++++|+.+.+++..+ |+|+++
T Consensus       340 -------~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~g-kvvv~~  387 (398)
T TIGR01751       340 -------REAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQG-NVAVLV  387 (398)
T ss_pred             -------HHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcCCCCc-eEEEEe
Confidence                   346788899999998865 46899999999999999988888 998864

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.5e-38  Score=278.04  Aligned_cols=294  Identities=22%  Similarity=0.288  Sum_probs=244.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCC---CCCCCEEeeCC-----
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR---LAPGDWVIPSP-----   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~---~~~Gd~V~~~~-----   73 (314)
                      ++.|.|.+.++||+|++.++++|++|+....+.++.  .+|..+|||++|+|+.+|+++++   |++||+|++..     
T Consensus        16 ~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~~~~~~~   93 (367)
T cd08263          16 EEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCG   93 (367)
T ss_pred             EEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEcCCCCCC
Confidence            467788899999999999999999999988887653  56889999999999999999988   99999999831     


Q ss_pred             -------------------------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHH
Q 021311           74 -------------------------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPL  110 (314)
Q Consensus        74 -------------------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  110 (314)
                                                                 ...|+|++|+.++.+.++++|+++++.+++.++..++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~  173 (367)
T cd08263          94 KCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGF  173 (367)
T ss_pred             CChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEECCCCCCHHHHhHhcchHH
Confidence                                                       1258999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHH
Q 021311          111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNV  188 (314)
Q Consensus       111 ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i  188 (314)
                      |||+++.+.+.+.+++++||+|+ |.+|++++++|+..|++ ++++..    ++++.+.++++|++.++++++.. .+.+
T Consensus       174 tA~~~l~~~~~~~~g~~VlI~g~-g~vG~~~~~lak~~G~~~vi~~~~----s~~~~~~~~~~g~~~v~~~~~~~~~~~l  248 (367)
T cd08263         174 TAYGALKHAADVRPGETVAVIGV-GGVGSSAIQLAKAFGASPIIAVDV----RDEKLAKAKELGATHTVNAAKEDAVAAI  248 (367)
T ss_pred             HHHHHHHhcccCCCCCEEEEECC-cHHHHHHHHHHHHcCCCeEEEEeC----CHHHHHHHHHhCCceEecCCcccHHHHH
Confidence            99999988888899999999964 99999999999999998 655552    67778888889999999887643 4567


Q ss_pred             HHHhcCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCCC-CcccccccceecceEEEEEechhhccccCHHHHH
Q 021311          189 KGLLANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR  266 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (314)
                      +..+++.+ +|+++||+++. ....++++|+++|+++.+|..... ...+....++.+++++.+++..      .+   .
T Consensus       249 ~~~~~~~~-~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~  318 (367)
T cd08263         249 REITGGRG-VDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGA------RP---R  318 (367)
T ss_pred             HHHhCCCC-CCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCC------Cc---H
Confidence            77776665 99999999997 778899999999999999854322 2233444444678887774321      11   3


Q ss_pred             HHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          267 NMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       267 ~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      +.++.+++++.++.+.+.   ++.++++++.++++.+.+++..| |+|++
T Consensus       319 ~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~  367 (367)
T cd08263         319 QDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHG-RAIVE  367 (367)
T ss_pred             HHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccc-eeeeC
Confidence            568889999999998863   46799999999999999988777 98874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=6.4e-38  Score=273.01  Aligned_cols=300  Identities=20%  Similarity=0.231  Sum_probs=234.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----CC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----SS   76 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~~   76 (314)
                      ++.|.|.|.++||+||+.++++|++|.....+.......+|..+|||++|+|++.|  +..+++||+|++...     ..
T Consensus        18 ~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~~~~~~~~~   95 (326)
T cd08289          18 KNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTSYDLGVSHH   95 (326)
T ss_pred             EEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCCCCCEEEEcccccCCCCC
Confidence            57788889999999999999999999876543221122458899999999999854  577999999998741     25


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhc---CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT---LNSGDSIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                      |+|++|+.++++.++++|+++++++++.+++.+.|||+++....+   ..++++|||+|++|.+|++++++|+.+|++++
T Consensus        96 g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~  175 (326)
T cd08289          96 GGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVV  175 (326)
T ss_pred             CcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEE
Confidence            899999999999999999999999999999999999988865333   34578999999999999999999999999998


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  233 (314)
                      ++++    ++++++.++++|++++++.++...+.++.+. +. ++|++|||+|+.....++++++++|+++.+|......
T Consensus       176 ~~~~----~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~-~~-~~d~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~~~~  249 (326)
T cd08289         176 ASTG----KADAADYLKKLGAKEVIPREELQEESIKPLE-KQ-RWAGAVDPVGGKTLAYLLSTLQYGGSVAVSGLTGGGE  249 (326)
T ss_pred             EEec----CHHHHHHHHHcCCCEEEcchhHHHHHHHhhc-cC-CcCEEEECCcHHHHHHHHHHhhcCCEEEEEeecCCCC
Confidence            8874    6788889999999999987765444555553 33 4999999999987789999999999999999654433


Q ss_pred             cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCc-cccceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          234 ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL-KYDMELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .++++..++.+++++.+.+....    ......+.+..+.+.+..+.+ .+.++.|+++++.+||+.+.+++..+ |+|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~g-kvvv  324 (326)
T cd08289         250 VETTVFPFILRGVNLLGIDSVEC----PMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALKQILQGRVTG-RTVV  324 (326)
T ss_pred             CCcchhhhhhccceEEEEEeEec----CchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHHHHhcCcccc-eEEE
Confidence            44445556678899988753211    011122344444444432222 23467899999999999999998887 9998


Q ss_pred             eC
Q 021311          313 KF  314 (314)
Q Consensus       313 ~~  314 (314)
                      ++
T Consensus       325 ~~  326 (326)
T cd08289         325 KL  326 (326)
T ss_pred             eC
Confidence            74

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.4e-37  Score=268.43  Aligned_cols=286  Identities=25%  Similarity=0.312  Sum_probs=238.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      ++.+.|.+.++||+||+.++++|+.|.......     ..|..+|||++|+|+++|+++..|++||+|+++.. .|+|++
T Consensus        17 ~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-~g~~~~   90 (305)
T cd08270          17 GEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGPAVGARVVGLGA-MGAWAE   90 (305)
T ss_pred             EecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEecC-Ccceee
Confidence            367788899999999999999999998876521     23578999999999999999999999999999853 489999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++.+.++++|+++++++++++++.+.|||+++.+.... +|++++|+|++|.+|++++++|+..|++++.+++    
T Consensus        91 ~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~----  165 (305)
T cd08270          91 LVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG----  165 (305)
T ss_pred             EEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC----
Confidence            99999999999999999999999999999999999876555 5999999999999999999999999999888874    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF  241 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  241 (314)
                      ++++.+.++++|++..++....       +.+ . ++|+++||.|+.....++++|+++|+++.+|........++...+
T Consensus       166 ~~~~~~~~~~~g~~~~~~~~~~-------~~~-~-~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  236 (305)
T cd08270         166 SPARAEGLRELGAAEVVVGGSE-------LSG-A-PVDLVVDSVGGPQLARALELLAPGGTVVSVGSSSGEPAVFNPAAF  236 (305)
T ss_pred             CHHHHHHHHHcCCcEEEecccc-------ccC-C-CceEEEECCCcHHHHHHHHHhcCCCEEEEEeccCCCcccccHHHH
Confidence            6788889988998766543321       122 2 499999999998889999999999999999965433333444444


Q ss_pred             ee--cceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          242 IF--KDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       242 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..  +++++.++++..      +....+.++.+++++.++++.+. .+.+++++++++++.+.+++..+ |+|+++
T Consensus       237 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~g-kvvi~~  305 (305)
T cd08270         237 VGGGGGRRLYTFFLYD------GEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRG-KAVLDV  305 (305)
T ss_pred             hcccccceEEEEEccC------HHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCc-eEEEeC
Confidence            33  588888887643      33455778999999999999865 46799999999999999988887 999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=9.2e-38  Score=273.34  Aligned_cols=291  Identities=20%  Similarity=0.247  Sum_probs=238.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      ++++|.|++.++||+|||.++++|++|+....+.++.  ..|.++|||++|+|+++|++++.|++||+|++.+       
T Consensus        15 ~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~   92 (338)
T PRK09422         15 VVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGH   92 (338)
T ss_pred             EEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCCCCCEEEEccCCCCCCC
Confidence            4678999999999999999999999999988887643  2367899999999999999999999999998621       


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ...|++++|+.++.+.++++|+++++.+++.++..+.|||+++ ..++++++++|||+|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~  171 (338)
T PRK09422         93 CEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGA  171 (338)
T ss_pred             ChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECC
Confidence                                0148999999999999999999999999999999999999998 5688999999999995


Q ss_pred             CcHHHHHHHHHHHH-cCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh--hhHHHHHHHhcCCCCCcE-EEecCCCcc
Q 021311          134 TSIVGQCIIQIARH-RGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ--LEVKNVKGLLANLPEPAL-GFNCVGGNS  209 (314)
Q Consensus       134 ~g~~G~~a~~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~~~~i~~~~~~~g~~d~-v~d~~g~~~  209 (314)
                       |++|++++++|+. .|++++.+++    ++++++.++++|++.+++++.  ...+.+++.++  + +|+ ++++.+...
T Consensus       172 -g~vG~~~~~la~~~~g~~v~~~~~----~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~--~-~d~vi~~~~~~~~  243 (338)
T PRK09422        172 -GGLGNLALQYAKNVFNAKVIAVDI----NDDKLALAKEVGADLTINSKRVEDVAKIIQEKTG--G-AHAAVVTAVAKAA  243 (338)
T ss_pred             -cHHHHHHHHHHHHhCCCeEEEEeC----ChHHHHHHHHcCCcEEecccccccHHHHHHHhcC--C-CcEEEEeCCCHHH
Confidence             9999999999998 4999888874    778899999999999998753  23455666654  3 885 455555556


Q ss_pred             HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeec
Q 021311          210 ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVP  289 (314)
Q Consensus       210 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  289 (314)
                      +..++++++++|+++.+|.... ..++.......++.++.+..+..          .+.++.+++++.+|++.+.++.++
T Consensus       244 ~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~g~l~~~v~~~~  312 (338)
T PRK09422        244 FNQAVDAVRAGGRVVAVGLPPE-SMDLSIPRLVLDGIEVVGSLVGT----------RQDLEEAFQFGAEGKVVPKVQLRP  312 (338)
T ss_pred             HHHHHHhccCCCEEEEEeeCCC-CceecHHHHhhcCcEEEEecCCC----------HHHHHHHHHHHHhCCCCccEEEEc
Confidence            6899999999999999985432 23334444555677776654321          245778889999999887677799


Q ss_pred             cccHHHHHHHHhccCCCCCceEeeC
Q 021311          290 FNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++|+.+.+++..+ |+++++
T Consensus       313 ~~~~~~a~~~~~~~~~~g-kvvv~~  336 (338)
T PRK09422        313 LEDINDIFDEMEQGKIQG-RMVIDF  336 (338)
T ss_pred             HHHHHHHHHHHHcCCccc-eEEEec
Confidence            999999999999988877 998864

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=7.7e-38  Score=252.37  Aligned_cols=294  Identities=23%  Similarity=0.289  Sum_probs=241.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCC--CCCccCCcceEEEEEEec--CCCCCCCCCCEEeeCCCCC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP--KVPAVGGYEGVGEVYSVG--SAVTRLAPGDWVIPSPPSS   76 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~--~~p~~~G~e~~G~V~~~G--~~v~~~~~Gd~V~~~~~~~   76 (314)
                      ++|.+.|+|+++|||+|+.|.+++|.    ++|.....+  --|+-+|...+|.++...  |+..+|++||.|.+..   
T Consensus        29 lee~~vp~p~~GqvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~---  101 (340)
T COG2130          29 LEEVDVPEPGEGQVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS---  101 (340)
T ss_pred             eEeccCCCCCcCceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---
Confidence            47899999999999999999999993    233322222  346778876655333322  6778899999999884   


Q ss_pred             CcccceEeeeccceEEcCCC---CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           77 GTWQSYVVKDQSVWHKVSKD---SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~---~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                       +|++|..++.+.+.+++++   +++... .+..+..|||.+|.+.+++++|++|+|.+|+|++|..+.|+||..|++|+
T Consensus       102 -GWq~y~i~~~~~l~Kvd~~~~pl~~~Lg-vLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVV  179 (340)
T COG2130         102 -GWQEYAISDGEGLRKLDPSPAPLSAYLG-VLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVV  179 (340)
T ss_pred             -cceEEEeechhhceecCCCCCCcchHHh-hcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEE
Confidence             8999999999999999865   333333 34558999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCcHHHHHHHHh-CCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKG-LGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      .++    +++++.+++.+ +|.+..+||+.+++ +.+++.+.+  ++|+.|||+|++.++..+..|+..+|++.+|..+.
T Consensus       180 Gia----Gg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~--GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~  253 (340)
T COG2130         180 GIA----GGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPK--GIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQ  253 (340)
T ss_pred             Eec----CCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCC--CeEEEEEcCCchHHHHHHHhhccccceeeeeehhh
Confidence            999    58999999987 99999999998766 568887776  69999999999999999999999999999997765


Q ss_pred             CCcc-c-----ccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccccee-eccccHHHHHHHHhccC
Q 021311          232 KPIT-V-----STSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMEL-VPFNNFQTALSKALGLH  304 (314)
Q Consensus       232 ~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~a~~~~~~~~  304 (314)
                      .+.+ .     ....++.+.+++.|+.....+    .....+.++++.+|+++|+++...+. -.||++++||.-|.+++
T Consensus       254 YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~----~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~  329 (340)
T COG2130         254 YNAPELPPGPRRLPLLMAKRLRVQGFIVASDY----DQRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGK  329 (340)
T ss_pred             cCCCCCCCCcchhhHHHhhhheeEEEEechhh----hhhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCC
Confidence            4332 2     224467788999999773221    22334778999999999999988654 57999999999999999


Q ss_pred             CCCCceEeeC
Q 021311          305 GSQPKQVIKF  314 (314)
Q Consensus       305 ~~~~k~vi~~  314 (314)
                      ..| |.|+++
T Consensus       330 N~G-K~vvKv  338 (340)
T COG2130         330 NFG-KLVVKV  338 (340)
T ss_pred             ccc-eEEEEe
Confidence            999 999875

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.7e-37  Score=272.80  Aligned_cols=292  Identities=25%  Similarity=0.306  Sum_probs=237.0

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--------CCCCCccCCcceEEEEEEecCCCC--CCCCCCEEe
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--------RPKVPAVGGYEGVGEVYSVGSAVT--RLAPGDWVI   70 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--------~~~~p~~~G~e~~G~V~~~G~~v~--~~~~Gd~V~   70 (314)
                      +++++.|++++++|+||+.++++|+.|+....|....        ...+|..+|||++|+|+++|+.++  .|++||+|+
T Consensus        14 ~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~   93 (350)
T cd08256          14 LEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVI   93 (350)
T ss_pred             EEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCCcccCCCCCCCEEE
Confidence            3578889999999999999999999999988775311        013577899999999999999999  899999999


Q ss_pred             eCC----------------------------CCCCcccceEeeecc-ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhc
Q 021311           71 PSP----------------------------PSSGTWQSYVVKDQS-VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT  121 (314)
Q Consensus        71 ~~~----------------------------~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~  121 (314)
                      +..                            ...|+|++|+.++++ .++++|++++++.++.+ .+++|+|+++ +.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~  171 (350)
T cd08256          94 SEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRAN  171 (350)
T ss_pred             ECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcC
Confidence            721                            125899999999988 57899999999999988 7899999998 6689


Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcE
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPAL  200 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~  200 (314)
                      ++++++|+|.|+ |.+|++++++|+.+|++++++++.   ++++.+.++++|+++++++.+. ..+.+.+++++.+ +|+
T Consensus       172 ~~~g~~vlI~g~-g~vG~~~~~~a~~~G~~~v~~~~~---~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~-vdv  246 (350)
T cd08256         172 IKFDDVVVLAGA-GPLGLGMIGAARLKNPKKLIVLDL---KDERLALARKFGADVVLNPPEVDVVEKIKELTGGYG-CDI  246 (350)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEcC---CHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCC-CCE
Confidence            999999999555 999999999999999987766653   6778888899999999887754 4466777777766 999


Q ss_pred             EEecCCCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccc-eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHc
Q 021311          201 GFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF-IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLARE  278 (314)
Q Consensus       201 v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (314)
                      +|||+|+. ....++++++++|+++.+|.... ...+..... ..+++++.+++...           ..++++++++++
T Consensus       247 vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~  314 (350)
T cd08256         247 YIEATGHPSAVEQGLNMIRKLGRFVEFSVFGD-PVTVDWSIIGDRKELDVLGSHLGP-----------YCYPIAIDLIAS  314 (350)
T ss_pred             EEECCCChHHHHHHHHHhhcCCEEEEEccCCC-CCccChhHhhcccccEEEEeccCc-----------hhHHHHHHHHHc
Confidence            99999964 56789999999999999985432 222222222 35677777765421           246788999999


Q ss_pred             CCccc---cceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          279 GKLKY---DMELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       279 g~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      |.+++   .++.|+++++++|++.+.+++..+ |+++
T Consensus       315 g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~-kvv~  350 (350)
T cd08256         315 GRLPTDGIVTHQFPLEDFEEAFELMARGDDSI-KVVL  350 (350)
T ss_pred             CCCChhHheEEEeEHHHHHHHHHHHHhCCCce-EEeC
Confidence            99987   356799999999999999887776 8874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.7e-37  Score=271.46  Aligned_cols=291  Identities=24%  Similarity=0.341  Sum_probs=241.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      .+++.|+++++||+|+|.++++|+.|+....+.++.. .+|.++|+|++|+|+++|++++.+++||+|++...       
T Consensus        15 ~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~   93 (337)
T cd08261          15 VDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECY   93 (337)
T ss_pred             EECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCCCCh
Confidence            5788899999999999999999999999988876543 45788999999999999999999999999997311       


Q ss_pred             -------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           75 -------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                         ..|+|++|+.++++ ++++|+++++++++.+ ..++++++++ ..++++++++|||+|+ |
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~-g  169 (337)
T cd08261          94 ACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGA-G  169 (337)
T ss_pred             hhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECC-C
Confidence                               15899999999999 9999999999999877 4788899888 6689999999999975 8


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCc-cHHHH
Q 021311          136 IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGN-SASKV  213 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~-~~~~~  213 (314)
                      .+|++++|+|+.+|++++++++    ++++.+.++++|+++++++.+.. .+.+..++++.+ +|++|||.|+. ....+
T Consensus       170 ~vG~~a~~lA~~~g~~v~~~~~----s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~-vd~vld~~g~~~~~~~~  244 (337)
T cd08261         170 PIGLGVIQVAKARGARVIVVDI----DDERLEFARELGADDTINVGDEDVAARLRELTDGEG-ADVVIDATGNPASMEEA  244 (337)
T ss_pred             HHHHHHHHHHHHcCCeEEEECC----CHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCC-CCEEEECCCCHHHHHHH
Confidence            9999999999999999988874    67888888999999999888643 466777777665 99999999874 55889


Q ss_pred             HHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc--c-ceeecc
Q 021311          214 LKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY--D-MELVPF  290 (314)
Q Consensus       214 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--~-~~~~~~  290 (314)
                      +++|+++|+++.+|... ....+....+..+++++.+...          ...+.++.+++++.+|.+++  . +..+++
T Consensus       245 ~~~l~~~G~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~  313 (337)
T cd08261         245 VELVAHGGRVVLVGLSK-GPVTFPDPEFHKKELTILGSRN----------ATREDFPDVIDLLESGKVDPEALITHRFPF  313 (337)
T ss_pred             HHHHhcCCEEEEEcCCC-CCCccCHHHHHhCCCEEEEecc----------CChhhHHHHHHHHHcCCCChhhheEEEeeH
Confidence            99999999999998543 2233334445556777766421          12356788899999999987  3 567999


Q ss_pred             ccHHHHHHHHhccC-CCCCceEeeC
Q 021311          291 NNFQTALSKALGLH-GSQPKQVIKF  314 (314)
Q Consensus       291 ~~~~~a~~~~~~~~-~~~~k~vi~~  314 (314)
                      +++.++++.+.+++ ..+ |+|++|
T Consensus       314 ~~~~~a~~~~~~~~~~~~-k~v~~~  337 (337)
T cd08261         314 EDVPEAFDLWEAPPGGVI-KVLIEF  337 (337)
T ss_pred             HHHHHHHHHHhcCCCceE-EEEEeC
Confidence            99999999999874 555 999876

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2e-37  Score=271.47  Aligned_cols=293  Identities=22%  Similarity=0.248  Sum_probs=234.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCC----------CCCCCCccCCcceEEEEEEecCCCCC-CCCCCEEe
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYP----------VRPKVPAVGGYEGVGEVYSVGSAVTR-LAPGDWVI   70 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~----------~~~~~p~~~G~e~~G~V~~~G~~v~~-~~~Gd~V~   70 (314)
                      ++++.|++++++|+|+|.++++|+.|+....|...          ..+.+|.++|+|++|+|+++|++++. +++||+|+
T Consensus        14 ~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~   93 (341)
T cd08262          14 RDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVT   93 (341)
T ss_pred             EecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCCCCcCCCCCCCEEE
Confidence            57889999999999999999999999998887321          11235788999999999999999997 99999999


Q ss_pred             eCCC----------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           71 PSPP----------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        71 ~~~~----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                      +++.                ..|+|++|++++.+.++++|+++++++++ ++.++++||+++ ..++++++++|||+|+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-~~~~~~~g~~VlI~g~-  170 (341)
T cd08262          94 SLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-RRARLTPGEVALVIGC-  170 (341)
T ss_pred             ecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-HhcCCCCCCEEEEECC-
Confidence            8731                25899999999999999999999999887 566888999996 6689999999999986 


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH----HHHHHHhcCCCCCcEEEecCCCc-c
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV----KNVKGLLANLPEPALGFNCVGGN-S  209 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~----~~i~~~~~~~g~~d~v~d~~g~~-~  209 (314)
                      |++|++++|+|+.+|++++++++.   ++++.+.++++|+++++++++...    ..+...+.+.+ +|+++||+|+. .
T Consensus       171 g~vg~~~~~la~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~-~d~vid~~g~~~~  246 (341)
T cd08262         171 GPIGLAVIAALKARGVGPIVASDF---SPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPK-PAVIFECVGAPGL  246 (341)
T ss_pred             CHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCC-CCEEEECCCCHHH
Confidence            999999999999999987776653   688888889999999998765421    13444555554 99999999984 5


Q ss_pred             HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ce
Q 021311          210 ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---ME  286 (314)
Q Consensus       210 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~  286 (314)
                      ...++++++++|+++.+|...... ...+...+.+++++.+....      .    .+.+..+++++++|.+.+.   ++
T Consensus       247 ~~~~~~~l~~~g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~l~~~g~i~~~~~i~~  315 (341)
T cd08262         247 IQQIIEGAPPGGRIVVVGVCMESD-NIEPALAIRKELTLQFSLGY------T----PEEFADALDALAEGKVDVAPMVTG  315 (341)
T ss_pred             HHHHHHHhccCCEEEEECCCCCCC-ccCHHHHhhcceEEEEEecc------c----HHHHHHHHHHHHcCCCChHHheEE
Confidence            688899999999999998553221 12222223466777654321      1    1356788899999999863   46


Q ss_pred             eeccccHHHHHHHHhccCCCCCceEee
Q 021311          287 LVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       287 ~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .+++++++++++.+.+++..+ |+|++
T Consensus       316 ~~~l~~~~~a~~~~~~~~~~~-kvvv~  341 (341)
T cd08262         316 TVGLDGVPDAFEALRDPEHHC-KILVD  341 (341)
T ss_pred             EeeHHHHHHHHHHHhcCCCce-EEEeC
Confidence            799999999999999988877 99874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=4.1e-37  Score=267.12  Aligned_cols=291  Identities=23%  Similarity=0.246  Sum_probs=239.0

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----CCC
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----SSG   77 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~~g   77 (314)
                      +.+.|.+.++||+||+.++++|+.|+....+.++. ...|.++|||++|+|+++|+  ..+++||+|+++..     ..|
T Consensus        19 ~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~~~~~~~~~g   95 (320)
T cd08243          19 EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAMGGMGRTFDG   95 (320)
T ss_pred             ecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCCCCCEEEEecCCCCCCCCc
Confidence            55667789999999999999999999988886543 24578999999999999995  57999999998752     248


Q ss_pred             cccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311           78 TWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus        78 ~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +|++|+.++++.++++|+++++++++.++.++.|||+++.+..++++|++|||+|++|.+|++++++|+..|++++.+++
T Consensus        96 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~  175 (320)
T cd08243          96 SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR  175 (320)
T ss_pred             ccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999999988874


Q ss_pred             CCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCc--c
Q 021311          158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPI--T  235 (314)
Q Consensus       158 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~--~  235 (314)
                          ++++++.++++|++++++......+.++++  +. ++|+++||+|+......+++++++|+++.+|.......  .
T Consensus       176 ----~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~--~~-~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  248 (320)
T cd08243         176 ----SPERAALLKELGADEVVIDDGAIAEQLRAA--PG-GFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGGQWTLED  248 (320)
T ss_pred             ----CHHHHHHHHhcCCcEEEecCccHHHHHHHh--CC-CceEEEECCChHHHHHHHHHhccCCEEEEEccCCCCcccCC
Confidence                677888888999988876544444567666  44 49999999999878899999999999999986432211  1


Q ss_pred             ccccc--ceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          236 VSTSA--FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       236 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .....  .+.+++++.++.....        ....++.++++++++.+++. ++.++++++++|++.+.+++..+ |+|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~-kvvv  319 (320)
T cd08243         249 FNPMDDIPSGVNLTLTGSSSGDV--------PQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFG-KVVV  319 (320)
T ss_pred             cchhhhhhhccceEEEecchhhh--------hHHHHHHHHHHHHCCceecccccEEcHHHHHHHHHHHHhCCCCC-cEEe
Confidence            11111  2256777776654221        13567888999999998864 57899999999999999887777 8775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.9e-37  Score=270.10  Aligned_cols=292  Identities=23%  Similarity=0.266  Sum_probs=245.2

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEee----------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP----------   71 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~----------   71 (314)
                      ++++.|.+.+++|+||+.++++|+.|+....|..+. ..+|..+|+|++|+|+.+|++++.+++||+|++          
T Consensus        16 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~~~   94 (345)
T cd08260          16 REVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCP   94 (345)
T ss_pred             EEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCCCCCEEEECCCCCCCCCc
Confidence            467888899999999999999999999998887653 256889999999999999999999999999987          


Q ss_pred             -----------------CCCCCCcccceEeeecc--ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcC
Q 021311           72 -----------------SPPSSGTWQSYVVKDQS--VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNG  132 (314)
Q Consensus        72 -----------------~~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g  132 (314)
                                       +.. .|+|++|++++.+  .++++|++++.++++.++.+++|||+++.+.+++.++++++|+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g  173 (345)
T cd08260          95 YCRAGDSNVCEHQVQPGFTH-PGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHG  173 (345)
T ss_pred             cccCcCcccCCCCcccccCC-CCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEEC
Confidence                             211 5899999999975  89999999999999999999999999998778899999999999


Q ss_pred             CCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-h-hHHHHHHHhcCCCCCcEEEecCCC-cc
Q 021311          133 ATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-L-EVKNVKGLLANLPEPALGFNCVGG-NS  209 (314)
Q Consensus       133 ~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~-~~~~i~~~~~~~g~~d~v~d~~g~-~~  209 (314)
                       +|.+|++++++|+..|+++++++.    +.++.+.++++|++.++++++ . ..+.++.+..+ + +|++|||.|+ ..
T Consensus       174 -~g~vg~~~~~~a~~~G~~vi~~~~----~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~-~-~d~vi~~~g~~~~  246 (345)
T cd08260         174 -CGGVGLSAVMIASALGARVIAVDI----DDDKLELARELGAVATVNASEVEDVAAAVRDLTGG-G-AHVSVDALGIPET  246 (345)
T ss_pred             -CCHHHHHHHHHHHHcCCeEEEEeC----CHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCC-C-CCEEEEcCCCHHH
Confidence             599999999999999999988874    677888888999999998876 3 34567777766 4 9999999986 45


Q ss_pred             HHHHHHhcccCCEEEEEcCCCCCC--cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---
Q 021311          210 ASKVLKFLSQGGTMVTYGGMSKKP--ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---  284 (314)
Q Consensus       210 ~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---  284 (314)
                      ....+++++++|+++.+|......  ..++...+..+++++.+.....          ...++.++++++++++.+.   
T Consensus       247 ~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~i~~~~~~  316 (345)
T cd08260         247 CRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMP----------AHRYDAMLALIASGKLDPEPLV  316 (345)
T ss_pred             HHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCC----------HHHHHHHHHHHHcCCCChhhhe
Confidence            588999999999999998654332  2334444556788888765421          2457788899999998753   


Q ss_pred             ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          285 MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       285 ~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ++.+++++++++++.+..++..+ |+|++
T Consensus       317 ~~~~~~~~~~~a~~~~~~~~~~~-~~v~~  344 (345)
T cd08260         317 GRTISLDEAPDALAAMDDYATAG-ITVIT  344 (345)
T ss_pred             eEEecHHHHHHHHHHHHcCCCCc-eEEec
Confidence            56799999999999999988887 88875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=4.3e-37  Score=269.82  Aligned_cols=294  Identities=23%  Similarity=0.248  Sum_probs=241.5

Q ss_pred             ccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            2 IELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         2 ~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++.|+| .++||+||+.++++|+.|+..+.|.++.. .+|.++|||++|+|+++|++++.+++||+|++...      
T Consensus        15 ~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~   93 (345)
T cd08286          15 EDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTV-TPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTC   93 (345)
T ss_pred             EecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCC-CCCceecccceEEEEEeccCccccCCCCEEEECCcCCCCCC
Confidence            56788886 79999999999999999999998876532 45789999999999999999999999999998531      


Q ss_pred             ---------------------CCCcccceEeeecc--ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           75 ---------------------SSGTWQSYVVKDQS--VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                                           ..|+|++|+.++.+  .++++|++++..+++.++..+++||+++...+++++++++||.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~  173 (345)
T cd08286          94 GYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIV  173 (345)
T ss_pred             hHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEE
Confidence                                 02889999999987  8999999999999999999999999987777889999999998


Q ss_pred             CCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCc-
Q 021311          132 GATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGN-  208 (314)
Q Consensus       132 g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~-  208 (314)
                      |+ |++|++++|+|+.+| .+++++.    .++++.+.++++|++.++++.+. ..+.+.+++.+.+ +|++|||++.. 
T Consensus       174 g~-g~~g~~~~~~a~~~G~~~v~~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~-~d~vld~~g~~~  247 (345)
T cd08286         174 GA-GPVGLAALLTAQLYSPSKIIMVD----LDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRG-VDVVIEAVGIPA  247 (345)
T ss_pred             CC-CHHHHHHHHHHHHcCCCeEEEEc----CCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCC-CCEEEECCCCHH
Confidence            86 999999999999999 5666643    26777888899999999988754 3456777777665 99999999864 


Q ss_pred             cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---cc
Q 021311          209 SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---DM  285 (314)
Q Consensus       209 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~  285 (314)
                      .+..++++++++|+++.+|... ....+++...+.+++++.+....           .+.++.+.++++++.+.+   .+
T Consensus       248 ~~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~  315 (345)
T cd08286         248 TFELCQELVAPGGHIANVGVHG-KPVDLHLEKLWIKNITITTGLVD-----------TNTTPMLLKLVSSGKLDPSKLVT  315 (345)
T ss_pred             HHHHHHHhccCCcEEEEecccC-CCCCcCHHHHhhcCcEEEeecCc-----------hhhHHHHHHHHHcCCCChHHcEE
Confidence            4588889999999999998543 23445555556788888875331           134778889999999875   35


Q ss_pred             eeeccccHHHHHHHHhccCC-CCCceEeeC
Q 021311          286 ELVPFNNFQTALSKALGLHG-SQPKQVIKF  314 (314)
Q Consensus       286 ~~~~~~~~~~a~~~~~~~~~-~~~k~vi~~  314 (314)
                      +.+++++++++++.+.+.+. ...|++|+|
T Consensus       316 ~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         316 HRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             eEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            78999999999999987632 235999875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=6.4e-37  Score=265.85  Aligned_cols=303  Identities=24%  Similarity=0.304  Sum_probs=252.5

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      +.+.|.+.+++|+||+.++++|+.|+....+.++....+|..+|||++|+|+++|+++..+++||+|.++.. .|+|++|
T Consensus        19 ~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~-~g~~~~~   97 (323)
T cd05276          19 EVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCALLA-GGGYAEY   97 (323)
T ss_pred             ecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEecC-CCceeEE
Confidence            556667889999999999999999999888776544457889999999999999999999999999999853 4899999


Q ss_pred             EeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc
Q 021311           83 VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS  162 (314)
Q Consensus        83 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~  162 (314)
                      +.++.+.++++|+++++.+++.++.++.++|+++.+.+.+.++++++|+|++|++|++++++++..|++++.+.+    +
T Consensus        98 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~----~  173 (323)
T cd05276          98 VVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG----S  173 (323)
T ss_pred             EEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC----C
Confidence            999999999999999999999999999999999988888999999999999999999999999999999888774    5


Q ss_pred             HHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccc
Q 021311          163 DEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF  241 (314)
Q Consensus       163 ~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  241 (314)
                      +++.+.++.+|.+.+++.... ..+.+...+.+.+ +|+++||.|+......+++++++|+++.+|........+....+
T Consensus       174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~  252 (323)
T cd05276         174 EEKLEACRALGADVAINYRTEDFAEEVKEATGGRG-VDVILDMVGGDYLARNLRALAPDGRLVLIGLLGGAKAELDLAPL  252 (323)
T ss_pred             HHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCC-eEEEEECCchHHHHHHHHhhccCCEEEEEecCCCCCCCCchHHH
Confidence            677788888998888887654 3355666666555 99999999988888899999999999999865443334444445


Q ss_pred             eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      +.+++++.++..........+......++++.+++.++++.+. ++.|++++++++++.+.+++..+ |+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-kvv~  323 (323)
T cd05276         253 LRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIG-KIVL  323 (323)
T ss_pred             HHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcc-eEeC
Confidence            5688999888765432222344455677888999999988764 57899999999999999887776 8764

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=2.8e-37  Score=272.54  Aligned_cols=291  Identities=26%  Similarity=0.339  Sum_probs=240.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      ++++.|++++++|+|++.++++|+.|+..+.+.++.  .+|..+|+|++|+|+++|++++.+++||+|++..        
T Consensus        16 ~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~   93 (363)
T cd08279          16 EEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCR   93 (363)
T ss_pred             EEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccCCCCEEEECCCCCCCCCh
Confidence            577889999999999999999999999998887653  5678999999999999999999999999999842        


Q ss_pred             --------------------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHH
Q 021311           74 --------------------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRM  115 (314)
Q Consensus        74 --------------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~  115 (314)
                                                            ...|+|++|+.++++.++++|+++++++++.+++++.+||++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~  173 (363)
T cd08279          94 YCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGA  173 (363)
T ss_pred             hhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHH
Confidence                                                  125899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhc
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLA  193 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~  193 (314)
                      +.+.++++++++|||+|+ |.+|++++++|+..|++ ++.++.    ++++.+.++++|++++++++.. ...+++.++.
T Consensus       174 ~~~~~~~~~g~~vLI~g~-g~vG~a~i~lak~~G~~~Vi~~~~----~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~  248 (363)
T cd08279         174 VVNTARVRPGDTVAVIGC-GGVGLNAIQGARIAGASRIIAVDP----VPEKLELARRFGATHTVNASEDDAVEAVRDLTD  248 (363)
T ss_pred             HHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcC----CHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcC
Confidence            988899999999999965 99999999999999997 666653    6777788889999999988764 4456777765


Q ss_pred             CCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHHHHHH
Q 021311          194 NLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDY  271 (314)
Q Consensus       194 ~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (314)
                      +.+ +|+++||+++ .....++++++++|+++.+|.... .+..+....+..++..+.++++...       ...+.++.
T Consensus       249 ~~~-vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  320 (363)
T cd08279         249 GRG-ADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSA-------NPRRDIPR  320 (363)
T ss_pred             CCC-CCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCc-------CcHHHHHH
Confidence            555 9999999995 455899999999999999985442 2334444445556677676554221       22467888


Q ss_pred             HHHHHHcCCccc---cceeeccccHHHHHHHHhccCCCC
Q 021311          272 LLCLAREGKLKY---DMELVPFNNFQTALSKALGLHGSQ  307 (314)
Q Consensus       272 ~~~~l~~g~~~~---~~~~~~~~~~~~a~~~~~~~~~~~  307 (314)
                      +++++.++.+.+   .++.|+++++++|++.+.+++..+
T Consensus       321 ~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  359 (363)
T cd08279         321 LLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENAR  359 (363)
T ss_pred             HHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCcee
Confidence            999999999885   346799999999999999877653

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=5.4e-37  Score=269.03  Aligned_cols=291  Identities=23%  Similarity=0.331  Sum_probs=238.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      ++.+.|++.+++|+||+.++++|+.|+....+.++ .+..|.++|+|++|+|+++|++++.+++||+|+++..       
T Consensus        15 ~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~   93 (343)
T cd08235          15 EEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECH   93 (343)
T ss_pred             EEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCCCh
Confidence            46788889999999999999999999999888764 2245789999999999999999999999999998631       


Q ss_pred             -------------------CCCcccceEeeeccc-----eEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEE
Q 021311           75 -------------------SSGTWQSYVVKDQSV-----WHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQ  130 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~-----~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI  130 (314)
                                         ..|+|++|+.++.+.     ++++|+++++.+++.+ .++.+||+++.. .++++|++|+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~g~~VlV  171 (343)
T cd08235          94 YCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCINAQRK-AGIKPGDTVLV  171 (343)
T ss_pred             HHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHHHHHHh-cCCCCCCEEEE
Confidence                               258999999999998     9999999999999876 688999999976 58999999999


Q ss_pred             cCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCc
Q 021311          131 NGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGN  208 (314)
Q Consensus       131 ~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~  208 (314)
                      +|+ |.+|++++++|+..|++ +++++.    ++++.+.++.+|.++++++++.. .+.+++.+.+.+ +|++|||+++.
T Consensus       172 ~g~-g~vg~~~~~la~~~g~~~v~~~~~----s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~-vd~vld~~~~~  245 (343)
T cd08235         172 IGA-GPIGLLHAMLAKASGARKVIVSDL----NEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRG-ADVVIVATGSP  245 (343)
T ss_pred             ECC-CHHHHHHHHHHHHcCCcEEEEECC----CHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcC-CCEEEECCCCh
Confidence            975 99999999999999999 666653    67777788889999999887654 356777777665 99999999975


Q ss_pred             -cHHHHHHhcccCCEEEEEcCCCCC-CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---
Q 021311          209 -SASKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---  283 (314)
Q Consensus       209 -~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---  283 (314)
                       .....+++++++|+++.+|..... ...+.......+++++.+.+...      +    +.++.+++++.++.+.+   
T Consensus       246 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~----~~~~~~~~l~~~~~l~~~~~  315 (343)
T cd08235         246 EAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAAS------P----EDYKEALELIASGKIDVKDL  315 (343)
T ss_pred             HHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCC------h----hhHHHHHHHHHcCCCChHHh
Confidence             568889999999999999864432 23333444556777777654321      1    45677889999999863   


Q ss_pred             cceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          284 DMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       284 ~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ....|+++++.++++.+.+++ .+ |+|++
T Consensus       316 ~~~~~~~~~~~~a~~~~~~~~-~~-k~vi~  343 (343)
T cd08235         316 ITHRFPLEDIEEAFELAADGK-SL-KIVIT  343 (343)
T ss_pred             eeeEeeHHHHHHHHHHHhCCC-cE-EEEeC
Confidence            245799999999999999988 76 99874

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=2.5e-37  Score=270.46  Aligned_cols=297  Identities=27%  Similarity=0.351  Sum_probs=238.5

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      +++++.|+|+++||+|++.++++|+.|+....+.+.  ..+|.++|||++|+|+.+|++++.+++||+|+++..      
T Consensus        16 ~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~   93 (339)
T cd08249          16 VVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPND   93 (339)
T ss_pred             ccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEeccccCCC
Confidence            357889999999999999999999999987755541  134678999999999999999999999999999752      


Q ss_pred             -CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcC----------CCCCEEEEcCCCcHHHHHHHH
Q 021311           75 -SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL----------NSGDSIVQNGATSIVGQCIIQ  143 (314)
Q Consensus        75 -~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~----------~~~~~vlI~g~~g~~G~~a~~  143 (314)
                       .+|+|++|++++.+.++++|+++++++++.+++.+.|||+++.+..++          .++++++|+|++|.+|+++++
T Consensus        94 ~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~  173 (339)
T cd08249          94 PRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQ  173 (339)
T ss_pred             CCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHH
Confidence             148999999999999999999999999999999999999998776554          789999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCC-ccHHHHHHhccc--
Q 021311          144 IARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQ--  219 (314)
Q Consensus       144 la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~--  219 (314)
                      +|+.+|++++.++     +.++++.++.+|+++++++.+.. .+.+++.++ . ++|+++|++|+ ..+..+++++++  
T Consensus       174 ~a~~~G~~v~~~~-----~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~-~-~~d~vl~~~g~~~~~~~~~~~l~~~~  246 (339)
T cd08249         174 LAKLAGYKVITTA-----SPKNFDLVKSLGADAVFDYHDPDVVEDIRAATG-G-KLRYALDCISTPESAQLCAEALGRSG  246 (339)
T ss_pred             HHHHcCCeEEEEE-----CcccHHHHHhcCCCEEEECCCchHHHHHHHhcC-C-CeeEEEEeeccchHHHHHHHHHhccC
Confidence            9999999998877     33677788889999999887643 456776665 3 49999999998 677899999999  


Q ss_pred             CCEEEEEcCCCCCCcccccccceecceEEEEEechhhcc--ccCHHHHHHHHHHHHHHHHcCCcccc-ceeec--cccHH
Q 021311          220 GGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLS--SEKATECRNMIDYLLCLAREGKLKYD-MELVP--FNNFQ  294 (314)
Q Consensus       220 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~--~~~~~  294 (314)
                      +|+++.+|......       .+..+.+........+..  ...+......++.+.+++.++++.+. ...++  +++++
T Consensus       247 ~g~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  319 (339)
T cd08249         247 GGKLVSLLPVPEET-------EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQ  319 (339)
T ss_pred             CCEEEEecCCCccc-------cCCCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHH
Confidence            99999998554322       111223333322222110  01233344667889999999999875 34577  99999


Q ss_pred             HHHHHHhccC-CCCCceEeeC
Q 021311          295 TALSKALGLH-GSQPKQVIKF  314 (314)
Q Consensus       295 ~a~~~~~~~~-~~~~k~vi~~  314 (314)
                      +||+.+.+++ ..+ |+|+++
T Consensus       320 ~a~~~~~~~~~~~~-kvvv~~  339 (339)
T cd08249         320 EGLDLLRKGKVSGE-KLVVRL  339 (339)
T ss_pred             HHHHHHHCCCccce-EEEEeC
Confidence            9999999988 666 999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=4.8e-37  Score=269.46  Aligned_cols=291  Identities=23%  Similarity=0.236  Sum_probs=239.2

Q ss_pred             CccCCCCCCC-CCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            1 MIELPPVEVK-ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         1 i~~~~~p~~~-~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      +++++.|+|. ++||+|++.++++|+.|+....+.++.  ..|..+|+|++|+|+++|++++.+++||+|++...     
T Consensus        14 ~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   91 (344)
T cd08284          14 VEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGE   91 (344)
T ss_pred             EEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccccCCCCEEEEcccCCCCC
Confidence            3578889885 999999999999999999988887653  45789999999999999999999999999998531     


Q ss_pred             -------------------------CCCcccceEeeecc--ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCE
Q 021311           75 -------------------------SSGTWQSYVVKDQS--VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDS  127 (314)
Q Consensus        75 -------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  127 (314)
                                               ..|+|++|+.++++  .++++|+++++++++.++..++|||+++.. +++.++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~~-~~~~~~~~  170 (344)
T cd08284          92 CFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR-AQVRPGDT  170 (344)
T ss_pred             ChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhhHh-cCCccCCE
Confidence                                     13889999999965  999999999999999999999999999966 88999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      |||+|+ |.+|++++++|+.+|+ +++++.    .++++.+.++++|+. .++.+.. +.+.+.+++++.+ +|++|||+
T Consensus       171 vlI~g~-g~vg~~~~~~a~~~g~~~v~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~-~dvvid~~  243 (344)
T cd08284         171 VAVIGC-GPVGLCAVLSAQVLGAARVFAVD----PVPERLERAAALGAE-PINFEDAEPVERVREATEGRG-ADVVLEAV  243 (344)
T ss_pred             EEEECC-cHHHHHHHHHHHHcCCceEEEEc----CCHHHHHHHHHhCCe-EEecCCcCHHHHHHHHhCCCC-CCEEEECC
Confidence            999975 9999999999999997 666664    267788888889975 4555543 4466777777665 99999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc-
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY-  283 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-  283 (314)
                      ++. ....++++++++|+++.+|..............+.+++++.+...          ...+.++.+++++.++.+.+ 
T Consensus       244 ~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~  313 (344)
T cd08284         244 GGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRC----------PVRSLFPELLPLLESGRLDLE  313 (344)
T ss_pred             CCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecC----------CcchhHHHHHHHHHcCCCChH
Confidence            974 558999999999999999965544444444555667887765421          12466888999999999875 


Q ss_pred             --cceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          284 --DMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       284 --~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                        .++.+++++++++++.+.+++. + |+|++
T Consensus       314 ~~~~~~~~~~~~~~a~~~~~~~~~-~-k~Vi~  343 (344)
T cd08284         314 FLIDHRMPLEEAPEAYRLFDKRKV-L-KVVLD  343 (344)
T ss_pred             HhEeeeecHHHHHHHHHHHhcCCc-e-EEEec
Confidence              3567999999999999988776 6 99986

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-37  Score=270.33  Aligned_cols=291  Identities=24%  Similarity=0.317  Sum_probs=240.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++|.|++.++||+|++.++++|+.|+....+.++.. .+|..+|||++|+|+.+|+.+..+++||+|++...      
T Consensus        15 ~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~   93 (334)
T PRK13771         15 IEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRM-KYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTC   93 (334)
T ss_pred             EEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCC-CCCeeccccceEEEEEeCCCCccCCCCCEEEECCCCCCcCC
Confidence            35778899999999999999999999999888876532 45789999999999999999989999999998741      


Q ss_pred             --------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           75 --------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        75 --------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                                          ..|+|++|+.++.+.++++|+++++..++.+++.+.+||+++.+. .++++++++|+|++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~  172 (334)
T PRK13771         94 EYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAG  172 (334)
T ss_pred             hhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCC
Confidence                                148999999999999999999999999999999999999999875 89999999999999


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHH
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVL  214 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~  214 (314)
                      |.+|++++++|+..|++++.+++    ++++.+.++++ ++++++++ ...+.++++  +  ++|+++||+|+.....++
T Consensus       173 g~~g~~~~~la~~~g~~vi~~~~----~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~--~--~~d~~ld~~g~~~~~~~~  242 (334)
T PRK13771        173 GGVGIHAIQVAKALGAKVIAVTS----SESKAKIVSKY-ADYVIVGS-KFSEEVKKI--G--GADIVIETVGTPTLEESL  242 (334)
T ss_pred             ccHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHH-HHHhcCch-hHHHHHHhc--C--CCcEEEEcCChHHHHHHH
Confidence            99999999999999999888874    67777888878 77777665 333455553  2  499999999998778999


Q ss_pred             HhcccCCEEEEEcCCCCCCc-ccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeecccc
Q 021311          215 KFLSQGGTMVTYGGMSKKPI-TVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNN  292 (314)
Q Consensus       215 ~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~  292 (314)
                      ++++++|+++.+|....... .......+.+++++.+....          ..+.++.+++++.++.+++. ++.|++++
T Consensus       243 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  312 (334)
T PRK13771        243 RSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISA----------TKRDVEEALKLVAEGKIKPVIGAEVSLSE  312 (334)
T ss_pred             HHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCC----------CHHHHHHHHHHHHcCCCcceEeeeEcHHH
Confidence            99999999999996443221 22222334578888776321          13567889999999998764 56799999


Q ss_pred             HHHHHHHHhccCCCCCceEeeC
Q 021311          293 FQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       293 ~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++||+.+.+++..+ |++++.
T Consensus       313 ~~~a~~~~~~~~~~~-kvv~~~  333 (334)
T PRK13771        313 IDKALEELKDKSRIG-KILVKP  333 (334)
T ss_pred             HHHHHHHHHcCCCcc-eEEEec
Confidence            999999999887777 988763

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=7.3e-37  Score=267.64  Aligned_cols=294  Identities=25%  Similarity=0.286  Sum_probs=246.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      .+.+.|.+.+++|+|++.++++|+.|.....+.++....+|.++|+|++|+|+.+|+.+..+++||+|++.+.       
T Consensus        17 ~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~   96 (338)
T cd08254          17 EEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACA   96 (338)
T ss_pred             eccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCCCCEEEECCCCCCCCCh
Confidence            4567888899999999999999999999998887644456889999999999999999999999999987210       


Q ss_pred             -------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           75 -------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                         ..|+|++|+.++.+.++++|+++++++++.++.+++|||+++....+++++++|||.|+ |
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~-g  175 (338)
T cd08254          97 LCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGL-G  175 (338)
T ss_pred             hhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECC-c
Confidence                               14899999999999999999999999999999999999999988888999999999865 9


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCc-cHHHH
Q 021311          136 IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGN-SASKV  213 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~-~~~~~  213 (314)
                      .+|++++++|+..|++++.++.    ++++.+.++.+|.+++++.++... +.+ ..+.+.+ +|+++||.|.. ....+
T Consensus       176 ~vG~~~~~la~~~G~~V~~~~~----s~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~-~D~vid~~g~~~~~~~~  249 (338)
T cd08254         176 GLGLNAVQIAKAMGAAVIAVDI----KEEKLELAKELGADEVLNSLDDSPKDKK-AAGLGGG-FDVIFDFVGTQPTFEDA  249 (338)
T ss_pred             HHHHHHHHHHHHcCCEEEEEcC----CHHHHHHHHHhCCCEEEcCCCcCHHHHH-HHhcCCC-ceEEEECCCCHHHHHHH
Confidence            9999999999999999887773    677888888899999888776543 334 5555554 99999999865 55889


Q ss_pred             HHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccH
Q 021311          214 LKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNF  293 (314)
Q Consensus       214 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~  293 (314)
                      +++|+++|+++.+|... ....+....++.++.++.+++...          .+.++.++++++++.+.+.++.++++++
T Consensus       250 ~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ll~~~~l~~~~~~~~~~~~  318 (338)
T cd08254         250 QKAVKPGGRIVVVGLGR-DKLTVDLSDLIARELRIIGSFGGT----------PEDLPEVLDLIAKGKLDPQVETRPLDEI  318 (338)
T ss_pred             HHHhhcCCEEEEECCCC-CCCccCHHHHhhCccEEEEeccCC----------HHHHHHHHHHHHcCCCcccceeEcHHHH
Confidence            99999999999998543 223344455667788888764321          2567888899999999877778999999


Q ss_pred             HHHHHHHhccCCCCCceEeeC
Q 021311          294 QTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       294 ~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++.+.+++..+ |+|+++
T Consensus       319 ~~a~~~~~~~~~~~-kvv~~~  338 (338)
T cd08254         319 PEVLERLHKGKVKG-RVVLVP  338 (338)
T ss_pred             HHHHHHHHcCCccc-eEEEeC
Confidence            99999999998887 999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=1.2e-36  Score=264.87  Aligned_cols=299  Identities=20%  Similarity=0.211  Sum_probs=243.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----CC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----SS   76 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~~   76 (314)
                      +++|.|+|+++||+|++.++++|+.|.....+.++..+.+|..+|||++|+|+.  +++..+++||+|+++..     ..
T Consensus        18 ~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~~~~~~~   95 (324)
T cd08288          18 RELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFKPGDRVVLTGWGVGERHW   95 (324)
T ss_pred             EECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCCCCCEEEECCccCCCCCC
Confidence            578889999999999999999999999988886543335678899999999998  77788999999998631     15


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHH--hhcCC-CCCEEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED--FTTLN-SGDSIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~-~~~~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                      |+|++|++++.+.++++|+++++++++.++..+++|+.++..  ..+.. ++++++|+|++|++|++++|+|+.+|++++
T Consensus        96 g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi  175 (324)
T cd08288          96 GGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVV  175 (324)
T ss_pred             CcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence            899999999999999999999999999999999999877641  13445 678999999999999999999999999998


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  233 (314)
                      +++.    ++++++.++++|+++++++++... .++.++.+  ++|.++|++++......+..++.+|+++.+|.....+
T Consensus       176 ~~~~----~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~  248 (324)
T cd08288         176 ASTG----RPEEADYLRSLGASEIIDRAELSE-PGRPLQKE--RWAGAVDTVGGHTLANVLAQTRYGGAVAACGLAGGAD  248 (324)
T ss_pred             EEeC----CHHHHHHHHhcCCCEEEEcchhhH-hhhhhccC--cccEEEECCcHHHHHHHHHHhcCCCEEEEEEecCCCC
Confidence            8874    678888999999999998875332 44444444  4899999999866778888999999999999653322


Q ss_pred             cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          234 ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ....+..++.+++++.+.+.....    .....+.++.+.+++.++.+.+.++.+++++++++++.+.+++..+ |++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~-~vvv~  323 (324)
T cd08288         249 LPTTVMPFILRGVTLLGIDSVMAP----IERRRAAWARLARDLDPALLEALTREIPLADVPDAAEAILAGQVRG-RVVVD  323 (324)
T ss_pred             CCcchhhhhccccEEEEEEeeccc----chhhHHHHHHHHHHHhcCCccccceeecHHHHHHHHHHHhcCCccC-eEEEe
Confidence            333444454789999987643321    1234567788888999998887778899999999999999998887 99987


Q ss_pred             C
Q 021311          314 F  314 (314)
Q Consensus       314 ~  314 (314)
                      +
T Consensus       324 ~  324 (324)
T cd08288         324 V  324 (324)
T ss_pred             C
Confidence            4

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.8e-37  Score=266.78  Aligned_cols=290  Identities=29%  Similarity=0.365  Sum_probs=240.6

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|++.+++|+|++.++++|+.|+....|.++. ...|.++|||++|+|+++|++++.+++||+|+++..       
T Consensus        16 ~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~   94 (332)
T cd08259          16 EEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCE   94 (332)
T ss_pred             EEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCCCCCEEEECCCCCCcCCh
Confidence            467888999999999999999999999998887654 256789999999999999999999999999998751       


Q ss_pred             -------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           75 -------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                         ..|+|++|++++.+.++++|+++++++++.++..+.+||+++.. +++++++++||+|++|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g  173 (332)
T cd08259          95 YCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGG  173 (332)
T ss_pred             hhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCC
Confidence                               14899999999999999999999999999999999999999988 8999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHH
Q 021311          136 IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLK  215 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~  215 (314)
                      .+|++++++++..|++++.+++    ++++.+.+..++.+.+++..+ ..+.+....    ++|++++|+|......+++
T Consensus       174 ~vG~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~d~v~~~~g~~~~~~~~~  244 (332)
T cd08259         174 GVGIHAIQLAKALGARVIAVTR----SPEKLKILKELGADYVIDGSK-FSEDVKKLG----GADVVIELVGSPTIEESLR  244 (332)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeC----CHHHHHHHHHcCCcEEEecHH-HHHHHHhcc----CCCEEEECCChHHHHHHHH
Confidence            9999999999999999988884    567777888889888887665 334454432    3999999999888889999


Q ss_pred             hcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHH
Q 021311          216 FLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQ  294 (314)
Q Consensus       216 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~  294 (314)
                      +++++|+++.+|........+.......++.++.+....          ....++.+++++.+|.+.+. ++.|++++++
T Consensus       245 ~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  314 (332)
T cd08259         245 SLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISA----------TKADVEEALKLVKEGKIKPVIDRVVSLEDIN  314 (332)
T ss_pred             HhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCC----------CHHHHHHHHHHHHcCCCccceeEEEcHHHHH
Confidence            999999999998654332222222223466666665311          13457788899999998765 5689999999


Q ss_pred             HHHHHHhccCCCCCceEee
Q 021311          295 TALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       295 ~a~~~~~~~~~~~~k~vi~  313 (314)
                      ++|+.+.+++..+ |++++
T Consensus       315 ~a~~~~~~~~~~~-kvv~~  332 (332)
T cd08259         315 EALEDLKSGKVVG-RIVLK  332 (332)
T ss_pred             HHHHHHHcCCccc-EEEeC
Confidence            9999999988777 88874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.8e-37  Score=264.93  Aligned_cols=294  Identities=22%  Similarity=0.233  Sum_probs=237.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhh-ccCCCCC-CCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRI-EGVYPVR-PKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~-~~~~~~~-~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~   79 (314)
                      ++++.|+++++||+|++.++++|+.|+... .+..+.. +..|..+|+|++|+|+++|+.++.+++||+|+++.  .|+|
T Consensus        10 ~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~--~g~~   87 (312)
T cd08269          10 EEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS--GGAF   87 (312)
T ss_pred             EECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec--CCcc
Confidence            577889999999999999999999999887 6654321 23478999999999999999999999999999986  5899


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecC
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRD  158 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~  158 (314)
                      ++|+.++.+.++++|+++  ..++....++.++|+++. .++++++++++|+|+ |.+|++++++|+..|++ ++++.+ 
T Consensus        88 ~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~-g~vg~~~~~la~~~g~~~v~~~~~-  162 (312)
T cd08269          88 AEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGA-GFIGLLFLQLAAAAGARRVIAIDR-  162 (312)
T ss_pred             eeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECC-
Confidence            999999999999999998  233332267889999987 689999999999975 99999999999999999 777663 


Q ss_pred             CCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCCCCccc
Q 021311          159 RAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKKPITV  236 (314)
Q Consensus       159 ~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~  236 (314)
                         ++++.+.++.+|++++++.+.. ..+.+++++.+.+ +|+++||.|+. .....+++|+++|+++.+|.....+..+
T Consensus       163 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~-vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~  238 (312)
T cd08269         163 ---RPARLALARELGATEVVTDDSEAIVERVRELTGGAG-ADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPV  238 (312)
T ss_pred             ---CHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCC-CCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCccc
Confidence               6777888889999888886643 4566888777766 99999999875 4588999999999999998554333334


Q ss_pred             ccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---cceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          237 STSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---DMELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .+.....+++++.++...+      +....+.++.+++++.++.+.+   .++.|++++++++++.+.+++....|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         239 PFQTWNWKGIDLINAVERD------PRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             CHHHHhhcCCEEEEecccC------ccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            4445556777777654322      2334577889999999999886   24679999999999999998764348876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=2.6e-36  Score=261.72  Aligned_cols=301  Identities=25%  Similarity=0.294  Sum_probs=252.9

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      +.+.|.+.+++|+|+|.++++|+.|+....+.++.  .+|..+|||++|+|+.+|+++.++++||+|+++.. .|+|++|
T Consensus        18 ~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~-~g~~~~~   94 (320)
T cd05286          18 DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGP-PGAYAEY   94 (320)
T ss_pred             ecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCCCCEEEEecC-CCceeEE
Confidence            44556688999999999999999999988876643  45778999999999999999999999999999752 4799999


Q ss_pred             EeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc
Q 021311           83 VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS  162 (314)
Q Consensus        83 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~  162 (314)
                      +.++.+.++++|++++..+++.++..+.++|+++.+.+++.++++++|+|++|.+|++++++++.+|++++++++    +
T Consensus        95 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~----~  170 (320)
T cd05286          95 RVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS----S  170 (320)
T ss_pred             EEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC----C
Confidence            999999999999999999999999999999999988889999999999999899999999999999999988874    6


Q ss_pred             HHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccc
Q 021311          163 DEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF  241 (314)
Q Consensus       163 ~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  241 (314)
                      +++.+.++.+|++++++..+. ..+.++.++.+.+ +|+++||.++.....++++++++|+++.+|........+....+
T Consensus       171 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  249 (320)
T cd05286         171 EEKAELARAAGADHVINYRDEDFVERVREITGGRG-VDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRL  249 (320)
T ss_pred             HHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCC-eeEEEECCCcHhHHHHHHhhccCcEEEEEecCCCCCCccCHHHH
Confidence            777888888999998887664 3456777777666 99999999988778999999999999999854433222333333


Q ss_pred             eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..+++++.+.....+.  ..+....+.+..+++++.++.+.+. ++.|++++++++++.+.+++..+ |+++++
T Consensus       250 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-~vv~~~  320 (320)
T cd05286         250 SKGSLFLTRPSLFHYI--ATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTG-KLLLIP  320 (320)
T ss_pred             HhcCcEEEEEehhhhc--CCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCc-eEEEeC
Confidence            3678888776654432  3466677788899999999988864 56799999999999999988777 998864

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=1.2e-36  Score=266.07  Aligned_cols=301  Identities=23%  Similarity=0.248  Sum_probs=246.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--CCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--SSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~~g~~   79 (314)
                      ++++.|++.+++|+|++.++++|+.|+....+.++. ..+|.++|||++|+|+++|+++..+++||+|++...  ..|+|
T Consensus        21 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~   99 (336)
T cd08252          21 IELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSN   99 (336)
T ss_pred             ccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccc
Confidence            356778889999999999999999999988776552 245778999999999999999999999999998742  35899


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCC-----CCEEEEcCCCcHHHHHHHHHHHHcC-CcEE
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNS-----GDSIVQNGATSIVGQCIIQIARHRG-IHSI  153 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlI~g~~g~~G~~a~~la~~~g-~~vi  153 (314)
                      ++|+.++.+.++++|+++++++++.++..+.+||+++.+.+.+++     +++|+|+|++|++|++++++|+.+| ++++
T Consensus       100 ~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~  179 (336)
T cd08252         100 AEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVI  179 (336)
T ss_pred             eEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEE
Confidence            999999999999999999999999999999999999888788888     9999999988999999999999999 8988


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEEcCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      .+++    ++++.+.++++|++++++..+...+.++.. .+. ++|+++||+|+ .....++++++++|+++.+|...  
T Consensus       180 ~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~-~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--  251 (336)
T cd08252         180 ATAS----RPESIAWVKELGADHVINHHQDLAEQLEAL-GIE-PVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--  251 (336)
T ss_pred             EEcC----ChhhHHHHHhcCCcEEEeCCccHHHHHHhh-CCC-CCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--
Confidence            8874    677788889999999998775444556533 333 49999999996 56689999999999999998542  


Q ss_pred             CcccccccceecceEEEEEechhhcc--ccCHHHHHHHHHHHHHHHHcCCcccc----ceeeccccHHHHHHHHhccCCC
Q 021311          233 PITVSTSAFIFKDLSLKGFWLQKWLS--SEKATECRNMIDYLLCLAREGKLKYD----MELVPFNNFQTALSKALGLHGS  306 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~~~----~~~~~~~~~~~a~~~~~~~~~~  306 (314)
                       ..++...+..+++++.+..+..+..  ...+....+.++.+++++.+|.+.+.    ...+++++++++++.+.+++..
T Consensus       252 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  330 (336)
T cd08252         252 -EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTI  330 (336)
T ss_pred             -CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCcc
Confidence             2344444446788888766543111  11222445778899999999999864    2347999999999999998887


Q ss_pred             CCceEee
Q 021311          307 QPKQVIK  313 (314)
Q Consensus       307 ~~k~vi~  313 (314)
                      + |++++
T Consensus       331 ~-~vv~~  336 (336)
T cd08252         331 G-KIVLE  336 (336)
T ss_pred             c-eEEeC
Confidence            7 88864

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=100.00  E-value=1.8e-36  Score=263.36  Aligned_cols=302  Identities=25%  Similarity=0.314  Sum_probs=253.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC----CCC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP----SSG   77 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~----~~g   77 (314)
                      ++++.|++.+++|+|++.++++|++|+....+.++..+..|..+|||++|+|+++|+.+.+|++||+|++...    ..|
T Consensus        18 ~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~~~~~~g   97 (325)
T cd08253          18 GDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRRQG   97 (325)
T ss_pred             eecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCCCCCEEEEeccccCCCCc
Confidence            4677888899999999999999999999888876544457889999999999999999999999999999852    158


Q ss_pred             cccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311           78 TWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus        78 ~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ++++|+.++.+.++++|+++++++++.++.++.+||+++...+++.+|++++|+|+++.+|++++++++..|++++.+++
T Consensus        98 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~  177 (325)
T cd08253          98 TAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATAS  177 (325)
T ss_pred             ceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999888874


Q ss_pred             CCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccc
Q 021311          158 DRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV  236 (314)
Q Consensus       158 ~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  236 (314)
                          ++++.+.+..+|.+++++.... ..+.+++++.+.+ +|+++||++.......+++++++|+++.+|... ....+
T Consensus       178 ----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~-~~~~~  251 (325)
T cd08253         178 ----SAEGAELVRQAGADAVFNYRAEDLADRILAATAGQG-VDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGG-LRGTI  251 (325)
T ss_pred             ----CHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCc-eEEEEECCchHHHHHHHHhhCCCCEEEEEeecC-CcCCC
Confidence                5777888888999988887654 3456777666655 999999999987788899999999999998544 22334


Q ss_pred             ccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          237 STSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ....++.++.++.+.....    ..+....+.++.+.+++.++.+++. ++.+++++++++++.+.+++..+ |+++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-kvv~~~  325 (325)
T cd08253         252 PINPLMAKEASIRGVLLYT----ATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIG-KVVLDP  325 (325)
T ss_pred             ChhHHHhcCceEEeeehhh----cCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHcCCCcc-eEEEeC
Confidence            4444456777777765322    2355667788888999999988765 56899999999999999988777 998864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08251 polyketide_synthase polyketide synthase

Probab=100.00  E-value=3.5e-36  Score=259.19  Aligned_cols=298  Identities=25%  Similarity=0.298  Sum_probs=246.2

Q ss_pred             CCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-CCCCcccceEe
Q 021311            6 PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-PSSGTWQSYVV   84 (314)
Q Consensus         6 ~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-~~~g~~~~~~~   84 (314)
                      .|++.+++|+|++.++++|+.|+....+.++..+.+|..+|+|++|+|+++|+.+.++++||+|+++. ...|+|++|+.
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~   81 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVT   81 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEE
Confidence            57789999999999999999999998887655446788999999999999999999999999999875 23489999999


Q ss_pred             eeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHH
Q 021311           85 KDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE  164 (314)
Q Consensus        85 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~  164 (314)
                      ++++.++++|+++++++++.++..+.+||+++. ..++++|++++|+++++.+|++++++++.+|++++.+++    +++
T Consensus        82 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~----~~~  156 (303)
T cd08251          82 VPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATAS----SDD  156 (303)
T ss_pred             ccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcC----CHH
Confidence            999999999999999999999999999999985 589999999999999999999999999999999888874    677


Q ss_pred             HHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC-cccccccce
Q 021311          165 AKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP-ITVSTSAFI  242 (314)
Q Consensus       165 ~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~  242 (314)
                      +.+.++.+|.+.+++.... ..+.++..+.+.+ +|+++||+++......+++++++|+++.+|...... ..+... .+
T Consensus       157 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~-~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~-~~  234 (303)
T cd08251         157 KLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRG-VDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLS-VL  234 (303)
T ss_pred             HHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCC-ceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCccCccChh-Hh
Confidence            8888889999999887664 3456777777666 999999998877788999999999999988543221 122222 23


Q ss_pred             ecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .+++.+....+..+.. ..+....+.+..+.+++.+|.+++. ++.|++++++++++.+.+++..+ |+++
T Consensus       235 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~  303 (303)
T cd08251         235 SNNQSFHSVDLRKLLL-LDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIG-KVVV  303 (303)
T ss_pred             hcCceEEEEehHHhhh-hCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcc-eEeC
Confidence            3455555554433222 2455667788899999999998864 57899999999999999988777 8764

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=1.5e-36  Score=265.79  Aligned_cols=290  Identities=25%  Similarity=0.354  Sum_probs=229.8

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhc-cCCCC-CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIE-GVYPV-RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~-~~~~~-~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~------   73 (314)
                      ++.+.|+++++||+||+.++++|++|+.... +.++. ...+|.++|+|++|+|+++|+++++|++||+|++.+      
T Consensus        12 ~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~   91 (339)
T cd08232          12 EERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGT   91 (339)
T ss_pred             EEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCcCCC
Confidence            5678899999999999999999999988763 33211 113577999999999999999999999999998731      


Q ss_pred             -------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEE
Q 021311           74 -------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSI  128 (314)
Q Consensus        74 -------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~v  128 (314)
                                               ...|+|++|++++.+.++++|+++++++++. ..++++||+++.+.... ++++|
T Consensus        92 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~V  169 (339)
T cd08232          92 CDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRV  169 (339)
T ss_pred             ChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEE
Confidence                                     1258999999999999999999999999876 56888999999876666 99999


Q ss_pred             EEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC
Q 021311          129 VQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       129 lI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      ||.|+ |.+|++++|+|+.+|+ +++++..    ++++.+.++.+|.++++++++..   +..+....+++|+++||.|.
T Consensus       170 LI~g~-g~vG~~~~~lak~~G~~~v~~~~~----s~~~~~~~~~~g~~~vi~~~~~~---~~~~~~~~~~vd~vld~~g~  241 (339)
T cd08232         170 LVTGA-GPIGALVVAAARRAGAAEIVATDL----ADAPLAVARAMGADETVNLARDP---LAAYAADKGDFDVVFEASGA  241 (339)
T ss_pred             EEECC-CHHHHHHHHHHHHcCCcEEEEECC----CHHHHHHHHHcCCCEEEcCCchh---hhhhhccCCCccEEEECCCC
Confidence            99875 9999999999999999 5555542    57777788889999999887644   23333332349999999996


Q ss_pred             -ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc--
Q 021311          208 -NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD--  284 (314)
Q Consensus       208 -~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~--  284 (314)
                       ......+++|+++|+++.+|... .+....+...+.+++++.+...           ..+.++.+++++.+|.+++.  
T Consensus       242 ~~~~~~~~~~L~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~  309 (339)
T cd08232         242 PAALASALRVVRPGGTVVQVGMLG-GPVPLPLNALVAKELDLRGSFR-----------FDDEFAEAVRLLAAGRIDVRPL  309 (339)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCC-CCccCcHHHHhhcceEEEEEec-----------CHHHHHHHHHHHHcCCCCchhh
Confidence             45688999999999999998544 2233333444567788777642           12457788899999988642  


Q ss_pred             -ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 -MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 -~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                       .+.|++++++++++.+.+++..+ |+|+++
T Consensus       310 ~~~~~~~~~~~~a~~~~~~~~~~g-kvvv~~  339 (339)
T cd08232         310 ITAVFPLEEAAEAFALAADRTRSV-KVQLSF  339 (339)
T ss_pred             eeEEecHHHHHHHHHHHHhCCCce-eEEEeC
Confidence             46799999999999999887777 999875

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.3e-36  Score=263.19  Aligned_cols=295  Identities=26%  Similarity=0.294  Sum_probs=250.4

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--------
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--------   74 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--------   74 (314)
                      +.+.|.++++|++|++.++++|+.|+....+.++..+..|.++|||++|+|+++|+.+.++++||+|.+...        
T Consensus        19 ~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~   98 (336)
T cd08276          19 EEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPP   98 (336)
T ss_pred             eccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCCCCCEEEEecccccccccc
Confidence            556677899999999999999999999988876654457889999999999999999999999999998651        


Q ss_pred             ------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHH
Q 021311           75 ------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCII  142 (314)
Q Consensus        75 ------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~  142 (314)
                                  ..|+|++|+.++.+.++++|+++++.+++.++..+.+||+++...+.+++|++++|+|+ |++|++++
T Consensus        99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~-g~~g~~~~  177 (336)
T cd08276          99 TAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGT-GGVSLFAL  177 (336)
T ss_pred             cccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECC-cHHHHHHH
Confidence                        14789999999999999999999999999999999999999988889999999999964 99999999


Q ss_pred             HHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-h-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccC
Q 021311          143 QIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-L-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQG  220 (314)
Q Consensus       143 ~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~  220 (314)
                      ++|+..|++++.+++    ++++++.+.++|.+.+++.+. . ....++..+++.+ +|+++||++......++++++++
T Consensus       178 ~~a~~~G~~v~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~l~~~  252 (336)
T cd08276         178 QFAKAAGARVIATSS----SDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRG-VDHVVEVGGPGTLAQSIKAVAPG  252 (336)
T ss_pred             HHHHHcCCEEEEEeC----CHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCC-CcEEEECCChHHHHHHHHhhcCC
Confidence            999999999888874    677888888899999988765 3 4456777777666 99999999987788999999999


Q ss_pred             CEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHH
Q 021311          221 GTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSK  299 (314)
Q Consensus       221 G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~  299 (314)
                      |+++.+|..............+.+++++.++....          ...++.+++++.++.+.+. ++.+++++++++++.
T Consensus       253 G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~  322 (336)
T cd08276         253 GVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS----------RAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRY  322 (336)
T ss_pred             CEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc----------HHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHH
Confidence            99999996544333444556678899999886532          2567788889988888764 568999999999999


Q ss_pred             HhccCCCCCceEeeC
Q 021311          300 ALGLHGSQPKQVIKF  314 (314)
Q Consensus       300 ~~~~~~~~~k~vi~~  314 (314)
                      +.+++..+ |+++++
T Consensus       323 ~~~~~~~~-kvv~~~  336 (336)
T cd08276         323 LESGSHFG-KVVIRV  336 (336)
T ss_pred             HHhCCCCc-eEEEeC
Confidence            99887777 988863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=1.7e-36  Score=265.77  Aligned_cols=295  Identities=26%  Similarity=0.298  Sum_probs=239.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      ++.+.|+++++||+||+.++++|+.|+....+.++.  ..|..+|+|++|+|+.+|+++..|++||+|+++..       
T Consensus        15 ~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~--~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~   92 (343)
T cd08236          15 EDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY--HPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCE   92 (343)
T ss_pred             EecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC--CCCcccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCh
Confidence            567888999999999999999999999988776522  45788999999999999999999999999998721       


Q ss_pred             -------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           75 -------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                         ..|+|++|+.++++.++++|+++++++++++ ..+++||+++. .++++++++|+|+|+ |
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~-g  169 (343)
T cd08236          93 YCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGA-G  169 (343)
T ss_pred             hHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECC-C
Confidence                               2589999999999999999999999999887 57889999996 588999999999975 9


Q ss_pred             HHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCc-cHHHH
Q 021311          136 IVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN-SASKV  213 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~-~~~~~  213 (314)
                      .+|++++++|+.+|++ ++++++    ++++.+.++++|++.++++++....+++..+++.+ +|+++||.|.. ....+
T Consensus       170 ~~g~~~~~lA~~~G~~~v~~~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~d~vld~~g~~~~~~~~  244 (343)
T cd08236         170 TIGLLAIQWLKILGAKRVIAVDI----DDEKLAVARELGADDTINPKEEDVEKVRELTEGRG-ADLVIEAAGSPATIEQA  244 (343)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEcC----CHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCC-CCEEEECCCCHHHHHHH
Confidence            9999999999999998 776663    56778888889999999887544566777777665 99999999864 55889


Q ss_pred             HHhcccCCEEEEEcCCCCCC-c-ccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---cceee
Q 021311          214 LKFLSQGGTMVTYGGMSKKP-I-TVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---DMELV  288 (314)
Q Consensus       214 ~~~l~~~G~~v~~g~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~~~~  288 (314)
                      +++|+++|+++.+|...... . .......+.+++++.+++....    .+ ...+.++.+.+++.++.+.+   ....+
T Consensus       245 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~  319 (343)
T cd08236         245 LALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYS----AP-FPGDEWRTALDLLASGKIKVEPLITHRL  319 (343)
T ss_pred             HHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccc----cc-cchhhHHHHHHHHHcCCCChHHheeeee
Confidence            99999999999998554221 1 1122334467889888876322    11 23456788899999999862   24679


Q ss_pred             ccccHHHHHHHHhc-cCCCCCceEe
Q 021311          289 PFNNFQTALSKALG-LHGSQPKQVI  312 (314)
Q Consensus       289 ~~~~~~~a~~~~~~-~~~~~~k~vi  312 (314)
                      ++++++++++.+.+ +...+ |+|+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~-k~v~  343 (343)
T cd08236         320 PLEDGPAAFERLADREEFSG-KVLL  343 (343)
T ss_pred             cHHHHHHHHHHHHcCCCCee-EEeC
Confidence            99999999999998 44455 8875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=2e-36  Score=267.95  Aligned_cols=290  Identities=21%  Similarity=0.195  Sum_probs=232.8

Q ss_pred             ccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            2 IELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         2 ~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      +++|.|++ +++||+|||.++++|+.|++...|.++.  .+|.++|||++|+|+++|+.+..+++||+|++...      
T Consensus        15 ~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~   92 (375)
T cd08282          15 EDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRC   92 (375)
T ss_pred             EeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCCC
Confidence            57888986 7999999999999999999999887652  46889999999999999999999999999987211      


Q ss_pred             ------------------------------CCCcccceEeeecc--ceEEcCCCCCHH---HhhcccccHHHHHHHHHHh
Q 021311           75 ------------------------------SSGTWQSYVVKDQS--VWHKVSKDSPME---YAATIIVNPLTALRMLEDF  119 (314)
Q Consensus        75 ------------------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~---~aa~~~~~~~ta~~~l~~~  119 (314)
                                                    ..|+|++|++++.+  .++++|++++++   .++.+..++++||+++ ..
T Consensus        93 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~  171 (375)
T cd08282          93 RNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-EL  171 (375)
T ss_pred             HHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-Hh
Confidence                                          13889999999975  899999999998   5677888899999999 66


Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPE  197 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~  197 (314)
                      +++++|++|+|.|+ |.+|++++|+|+.+|+ ++++ ++   .++++.+.++++|+. .+++++. ..+.+++++. . +
T Consensus       172 ~~~~~g~~vlI~g~-g~vg~~~~~~a~~~G~~~vi~-~~---~~~~~~~~~~~~g~~-~v~~~~~~~~~~i~~~~~-~-~  243 (375)
T cd08282         172 AGVQPGDTVAVFGA-GPVGLMAAYSAILRGASRVYV-VD---HVPERLDLAESIGAI-PIDFSDGDPVEQILGLEP-G-G  243 (375)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEE-EC---CCHHHHHHHHHcCCe-EeccCcccHHHHHHHhhC-C-C
Confidence            89999999999876 9999999999999998 5666 43   278888899999984 5666543 4466777766 3 4


Q ss_pred             CcEEEecCCCcc------------HHHHHHhcccCCEEEEEcCCCCCC------------cccccccceecceEEEEEec
Q 021311          198 PALGFNCVGGNS------------ASKVLKFLSQGGTMVTYGGMSKKP------------ITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       198 ~d~v~d~~g~~~------------~~~~~~~l~~~G~~v~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~  253 (314)
                      +|+++||+|++.            +..++++++++|+++.+|......            ..++...++.++.++.+...
T Consensus       244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (375)
T cd08282         244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQA  323 (375)
T ss_pred             CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecC
Confidence            999999999874            578899999999999888543221            12233334445555554321


Q ss_pred             hhhccccCHHHHHHHHHHHHHHHHcCCccc---cceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          254 QKWLSSEKATECRNMIDYLLCLAREGKLKY---DMELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                                ...+.++.++++++++++++   .++.+++++++++++.+.+++ .+ |+|+++
T Consensus       324 ----------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~-kvvv~~  375 (375)
T cd08282         324 ----------PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ET-KVVIKP  375 (375)
T ss_pred             ----------CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ce-EEEeCC
Confidence                      12356788899999999986   467899999999999999888 76 999864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=2.4e-36  Score=264.76  Aligned_cols=292  Identities=24%  Similarity=0.284  Sum_probs=233.8

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccC-CCC-CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGV-YPV-RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~-~~~-~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~------   73 (314)
                      ++.+.|.+.++||+|+|.++++|+.|...+.+. .+. ...+|.++|+|++|+|+++|+.++++++||+|++.+      
T Consensus        13 ~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   92 (343)
T cd05285          13 EERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRT   92 (343)
T ss_pred             EECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEEccccCCCC
Confidence            567888899999999999999999998876322 111 113577899999999999999999999999998621      


Q ss_pred             ---------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcC
Q 021311           74 ---------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNG  132 (314)
Q Consensus        74 ---------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g  132 (314)
                                           ...|+|++|++++++.++++|+++++++++.+ .++.+||+++ ..+++++++++||.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g  170 (343)
T cd05285          93 CEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFG  170 (343)
T ss_pred             ChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC
Confidence                                 12589999999999999999999999999877 4788999997 669999999999987


Q ss_pred             CCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhh----HHHHHHHhcCCCCCcEEEecCCC
Q 021311          133 ATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLE----VKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       133 ~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      + |.+|++++++|+.+|++ ++++.+    ++++.+.++++|+++++++++..    .+.+.+.+++.+ +|++|||.|+
T Consensus       171 ~-g~vG~~a~~lak~~G~~~v~~~~~----~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~-~d~vld~~g~  244 (343)
T cd05285         171 A-GPIGLLTAAVAKAFGATKVVVTDI----DPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKG-PDVVIECTGA  244 (343)
T ss_pred             C-CHHHHHHHHHHHHcCCcEEEEECC----CHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCC-CCEEEECCCC
Confidence            6 89999999999999998 666653    67788888899999999887643    566777777765 9999999998


Q ss_pred             c-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---
Q 021311          208 N-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---  283 (314)
Q Consensus       208 ~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---  283 (314)
                      . .....+++++++|+++.+|.... ...+++.....+++++.++...           .+.++.+++++.++.+.+   
T Consensus       245 ~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~  312 (343)
T cd05285         245 ESCIQTAIYATRPGGTVVLVGMGKP-EVTLPLSAASLREIDIRGVFRY-----------ANTYPTAIELLASGKVDVKPL  312 (343)
T ss_pred             HHHHHHHHHHhhcCCEEEEEccCCC-CCccCHHHHhhCCcEEEEeccC-----------hHHHHHHHHHHHcCCCCchHh
Confidence            6 66889999999999999984432 2233333455567777765431           145778889999998753   


Q ss_pred             cceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          284 DMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       284 ~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .++.|+++++.++++.+.+++..-+|++|.
T Consensus       313 ~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~  342 (343)
T cd05285         313 ITHRFPLEDAVEAFETAAKGKKGVIKVVIE  342 (343)
T ss_pred             EEEEEeHHHHHHHHHHHHcCCCCeeEEEEe
Confidence            246799999999999999875432399873

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.2e-36  Score=261.95  Aligned_cols=296  Identities=28%  Similarity=0.352  Sum_probs=246.6

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--------
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--------   74 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--------   74 (314)
                      +.+.|.+.+++|+|++.++++|.+|+....|..+....+|..+|||++|+|+++|+++..+++||+|++...        
T Consensus        19 ~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~   98 (342)
T cd08266          19 DLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEY   98 (342)
T ss_pred             ecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCCCCCEEEEccccccccchh
Confidence            556677899999999999999999999888865433356889999999999999999999999999998732        


Q ss_pred             ------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcH
Q 021311           75 ------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSI  136 (314)
Q Consensus        75 ------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~  136 (314)
                                        ..|++++|+.++.+.++++|++++++++++++..+.+||+++.+..++.++++++|+|+++.
T Consensus        99 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~  178 (342)
T cd08266          99 CLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSG  178 (342)
T ss_pred             hccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCch
Confidence                              25789999999999999999999999999999999999999988889999999999999899


Q ss_pred             HHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHH
Q 021311          137 VGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLK  215 (314)
Q Consensus       137 ~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~  215 (314)
                      +|++++++++..|++++.+.+    ++++.+.+..++.+.+++..+. ..+.+...+.+.+ +|++++++|...+...++
T Consensus       179 iG~~~~~~~~~~g~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~g~~~~~~~~~  253 (342)
T cd08266         179 VGSAAIQIAKLFGATVIATAG----SEDKLERAKELGADYVIDYRKEDFVREVRELTGKRG-VDVVVEHVGAATWEKSLK  253 (342)
T ss_pred             HHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCC-CcEEEECCcHHHHHHHHH
Confidence            999999999999999888774    5677778888888877776553 3355666666554 999999999988889999


Q ss_pred             hcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHH
Q 021311          216 FLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQ  294 (314)
Q Consensus       216 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~  294 (314)
                      +++++|+++.++........+.....+.+++++.+.....          ...+..+++++.++.+.+. ++.|++++++
T Consensus       254 ~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  323 (342)
T cd08266         254 SLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGT----------KAELDEALRLVFRGKLKPVIDSVFPLEEAA  323 (342)
T ss_pred             HhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCC----------HHHHHHHHHHHHcCCcccceeeeEcHHHHH
Confidence            9999999999986554333333334566788888875432          2467788899999988764 5689999999


Q ss_pred             HHHHHHhccCCCCCceEeeC
Q 021311          295 TALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       295 ~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++.+.+++..+ |+++++
T Consensus       324 ~a~~~~~~~~~~~-kvv~~~  342 (342)
T cd08266         324 EAHRRLESREQFG-KIVLTP  342 (342)
T ss_pred             HHHHHHHhCCCCc-eEEEeC
Confidence            9999999887777 999864

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.9e-36  Score=267.68  Aligned_cols=292  Identities=20%  Similarity=0.272  Sum_probs=230.8

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCC------CCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVY------PVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~------~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--   73 (314)
                      +++|.|++++++|+||+.++++|++|++...+..      +..+.+|.++|||++|+|+++|++++.|++||+|++.+  
T Consensus        42 ~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~  121 (384)
T cd08265          42 EDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMM  121 (384)
T ss_pred             EECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCC
Confidence            5789999999999999999999999998876321      22235688999999999999999999999999998621  


Q ss_pred             ------------------------CCCCcccceEeeeccceEEcCCC-------CCHHHhhcccccHHHHHHHHHHh-hc
Q 021311           74 ------------------------PSSGTWQSYVVKDQSVWHKVSKD-------SPMEYAATIIVNPLTALRMLEDF-TT  121 (314)
Q Consensus        74 ------------------------~~~g~~~~~~~~~~~~~~~~p~~-------~~~~~aa~~~~~~~ta~~~l~~~-~~  121 (314)
                                              ..+|+|++|+.++++.++++|++       ++.+ +++++.++++||+++... .+
T Consensus       122 ~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~  200 (384)
T cd08265         122 WCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGG  200 (384)
T ss_pred             CCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCC
Confidence                                    01589999999999999999986       3455 555666889999999765 68


Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecCh----hhHHHHHHHhcCCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQ----LEVKNVKGLLANLP  196 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~----~~~~~i~~~~~~~g  196 (314)
                      +++|++|+|+|+ |++|++++++|+..|+. ++++..    ++++.+.++++|+++++++++    .+.+.+++++.+++
T Consensus       201 ~~~g~~VlV~g~-g~vG~~ai~lA~~~G~~~vi~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~g  275 (384)
T cd08265         201 FRPGAYVVVYGA-GPIGLAAIALAKAAGASKVIAFEI----SEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWG  275 (384)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC----CHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCC
Confidence            999999999975 99999999999999994 665553    566888889999999988763    34466888887776


Q ss_pred             CCcEEEecCCCc--cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHH
Q 021311          197 EPALGFNCVGGN--SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC  274 (314)
Q Consensus       197 ~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (314)
                       +|+++||.|..  ....++++|+++|+++.+|.... ...+.......+..++.+.+...         ....++++++
T Consensus       276 -vDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~  344 (384)
T cd08265         276 -ADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAAT-TVPLHLEVLQVRRAQIVGAQGHS---------GHGIFPSVIK  344 (384)
T ss_pred             -CCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCC-CCcccHHHHhhCceEEEEeeccC---------CcchHHHHHH
Confidence             99999999974  45888999999999999985432 23333344445566777664211         1245788999


Q ss_pred             HHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          275 LAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       275 ~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      ++.++.+.+.   ++.|+++++++|++.+.++ ..+ |+|+
T Consensus       345 ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~-kvvv  383 (384)
T cd08265         345 LMASGKIDMTKIITARFPLEGIMEAIKAASER-TDG-KITI  383 (384)
T ss_pred             HHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCc-eEEe
Confidence            9999999863   5679999999999997664 455 8775

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.7e-36  Score=262.65  Aligned_cols=282  Identities=26%  Similarity=0.352  Sum_probs=228.2

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      ++.+.|+++++||+||+.++++|++|+....+. +. ..+|..+|||++|+|+.+|++++.+++||+|++...       
T Consensus        17 ~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~-~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~   94 (325)
T cd08264          17 EDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KV-KPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCD   94 (325)
T ss_pred             EeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CC-CCCCeecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCCCh
Confidence            356677889999999999999999998887642 21 135778999999999999999999999999997632       


Q ss_pred             -------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           75 -------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                         ..|+|++|+.++.+.++++|+++++++++.++.++.+||+++.. ++++++++++|+|++|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g  173 (325)
T cd08264          95 MCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGLGPGETVVVFGASG  173 (325)
T ss_pred             hhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCc
Confidence                               25899999999999999999999999999999999999999976 8999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHH
Q 021311          136 IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLK  215 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~  215 (314)
                      ++|++++++|+.+|++++.+++        .+.++.+|++++++.++. .+.++.++  . ++|+++||+|......+++
T Consensus       174 ~vg~~~~~~a~~~G~~v~~~~~--------~~~~~~~g~~~~~~~~~~-~~~l~~~~--~-~~d~vl~~~g~~~~~~~~~  241 (325)
T cd08264         174 NTGIFAVQLAKMMGAEVIAVSR--------KDWLKEFGADEVVDYDEV-EEKVKEIT--K-MADVVINSLGSSFWDLSLS  241 (325)
T ss_pred             hHHHHHHHHHHHcCCeEEEEeH--------HHHHHHhCCCeeecchHH-HHHHHHHh--C-CCCEEEECCCHHHHHHHHH
Confidence            9999999999999999877762        256677999888887653 44566666  3 4999999999877799999


Q ss_pred             hcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccHHH
Q 021311          216 FLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQT  295 (314)
Q Consensus       216 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~  295 (314)
                      +|+++|+++.+|........++...++.++.++.+...+.          ++.++.+++++....+ ..++.|+++++++
T Consensus       242 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~  310 (325)
T cd08264         242 VLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGT----------RKELLELVKIAKDLKV-KVWKTFKLEEAKE  310 (325)
T ss_pred             hhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCC----------HHHHHHHHHHHHcCCc-eeEEEEcHHHHHH
Confidence            9999999999986433234445555666777777764321          2456667777754442 2356799999999


Q ss_pred             HHHHHhccCCCCCce
Q 021311          296 ALSKALGLHGSQPKQ  310 (314)
Q Consensus       296 a~~~~~~~~~~~~k~  310 (314)
                      |++.+.+++..+ |+
T Consensus       311 a~~~~~~~~~~~-kv  324 (325)
T cd08264         311 ALKELFSKERDG-RI  324 (325)
T ss_pred             HHHHHHcCCCcc-cc
Confidence            999999877665 65

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=4.3e-36  Score=263.47  Aligned_cols=293  Identities=22%  Similarity=0.286  Sum_probs=234.7

Q ss_pred             CccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEee-CCC----
Q 021311            1 MIELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP-SPP----   74 (314)
Q Consensus         1 i~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~-~~~----   74 (314)
                      +++.|.|+| +++||+||+.++++|++|+..+.|.++.  ..|.++|||++|+|+++|+++..+++||+|++ +..    
T Consensus        14 ~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   91 (345)
T cd08287          14 VEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGT   91 (345)
T ss_pred             EEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCccCCCCEEEeccccCCCC
Confidence            357788886 8999999999999999999988887653  45789999999999999999999999999987 221    


Q ss_pred             ---------------------CCCcccceEeeecc--ceEEcCCCCCHHHhh-----cccccHHHHHHHHHHhhcCCCCC
Q 021311           75 ---------------------SSGTWQSYVVKDQS--VWHKVSKDSPMEYAA-----TIIVNPLTALRMLEDFTTLNSGD  126 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa-----~~~~~~~ta~~~l~~~~~~~~~~  126 (314)
                                           ..|+|++|+.++.+  .++++|++++++.+.     ++...+.+||+++. .+++++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~~-~~~~~~g~  170 (345)
T cd08287          92 CPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAV-SAGVRPGS  170 (345)
T ss_pred             ChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHHH-hcCCCCCC
Confidence                                 13889999999964  999999999883221     22256888999985 58899999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +++|.|+ |++|++++++|+..|++++++++.   ++++.+.++++|+++++++.+. ..+.+.+.+++.+ +|+++||+
T Consensus       171 ~vlI~g~-g~vg~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~-~d~il~~~  245 (345)
T cd08287         171 TVVVVGD-GAVGLCAVLAAKRLGAERIIAMSR---HEDRQALAREFGATDIVAERGEEAVARVRELTGGVG-ADAVLECV  245 (345)
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCC-CCEEEECC
Confidence            9999775 999999999999999986555543   5677888899999999998765 3466777777666 99999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc-
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY-  283 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-  283 (314)
                      |+. ....++++++++|+++.+|.... +..++....+.+++++.+...          ...+.++++++++.++.+++ 
T Consensus       246 g~~~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~  314 (345)
T cd08287         246 GTQESMEQAIAIARPGGRVGYVGVPHG-GVELDVRELFFRNVGLAGGPA----------PVRRYLPELLDDVLAGRINPG  314 (345)
T ss_pred             CCHHHHHHHHHhhccCCEEEEecccCC-CCccCHHHHHhcceEEEEecC----------CcHHHHHHHHHHHHcCCCCHH
Confidence            874 45899999999999999985542 333444345678888877422          23457888999999999886 


Q ss_pred             --cceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          284 --DMELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       284 --~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                        .++.+++++++++++.+.+.+. . |++|++
T Consensus       315 ~~~~~~~~l~~~~~a~~~~~~~~~-~-k~~~~~  345 (345)
T cd08287         315 RVFDLTLPLDEVAEGYRAMDERRA-I-KVLLRP  345 (345)
T ss_pred             HhEEeeecHHHHHHHHHHHhCCCc-e-EEEeCC
Confidence              3567999999999999887654 3 999864

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1e-35  Score=259.61  Aligned_cols=297  Identities=25%  Similarity=0.313  Sum_probs=238.6

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      ++.+.|.|.+++|+|++.++++|+.|+....+.++..+.+|..+|||++|+|+.+|+++..|++||+|.++.. .|+|++
T Consensus        18 ~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~-~g~~~~   96 (331)
T cd08273          18 VEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALTR-VGGNAE   96 (331)
T ss_pred             eccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCCCCEEEEeCC-Ccceee
Confidence            4668888999999999999999999999888876543356889999999999999999999999999999863 389999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |+.++.+.++++|+++++++++.++.++.+||+++.+.+++.++++++|+|++|.+|++++++|+..|++++.++     
T Consensus        97 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~-----  171 (331)
T cd08273          97 YINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTA-----  171 (331)
T ss_pred             EEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEe-----
Confidence            999999999999999999999999999999999998888999999999999999999999999999999988887     


Q ss_pred             cHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCc-ccc--c
Q 021311          162 SDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPI-TVS--T  238 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~--~  238 (314)
                      ++++.+.++.+|+.. ++......... .... . ++|+++||+++.....++++++++|+++.+|.....+. ...  +
T Consensus       172 ~~~~~~~~~~~g~~~-~~~~~~~~~~~-~~~~-~-~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  247 (331)
T cd08273         172 SERNHAALRELGATP-IDYRTKDWLPA-MLTP-G-GVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQGRRSLAA  247 (331)
T ss_pred             CHHHHHHHHHcCCeE-EcCCCcchhhh-hccC-C-CceEEEECCchHHHHHHHHHhcCCCEEEEEccCCCCCCccccccc
Confidence            366777888899754 44443222111 2233 2 49999999999888899999999999999985543221 111  0


Q ss_pred             ------------ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCC
Q 021311          239 ------------SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHG  305 (314)
Q Consensus       239 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~  305 (314)
                                  ...+.+++++.+.+.  + ...++....+.++.+++++++|.+.+. ++.+++++++++++.+.+++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~  324 (331)
T cd08273         248 LGSLLARLAKLKLLPTGRRATFYYVWR--D-RAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKV  324 (331)
T ss_pred             hhhhhhhhhhhcceeccceeEEEeech--h-cccCHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCC
Confidence                        111223344444333  1 223456667889999999999999864 568999999999999998887


Q ss_pred             CCCceEe
Q 021311          306 SQPKQVI  312 (314)
Q Consensus       306 ~~~k~vi  312 (314)
                      .+ |+|+
T Consensus       325 ~g-kvv~  330 (331)
T cd08273         325 VG-KIVL  330 (331)
T ss_pred             cc-eEEe
Confidence            77 8775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.8e-35  Score=257.46  Aligned_cols=304  Identities=29%  Similarity=0.388  Sum_probs=253.8

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC----CCCc
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP----SSGT   78 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~----~~g~   78 (314)
                      +.+.|.+++++|+|+|.++++|+.|.....+.+...+.+|..+|||++|+|+.+|+++..+++||+|.++..    ..|+
T Consensus        19 ~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~   98 (328)
T cd08268          19 ELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYGT   98 (328)
T ss_pred             ecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCCCCCEEEeccccccCCCcc
Confidence            456677899999999999999999998887766544456789999999999999999999999999998753    2489


Q ss_pred             ccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311           79 WQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus        79 ~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +++|+.++.+.++++|+++++..++.++.++.+||+++.....+.++++++|+|++|.+|++++++++..|++++.+++ 
T Consensus        99 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~-  177 (328)
T cd08268          99 YAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTR-  177 (328)
T ss_pred             ceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC-
Confidence            9999999999999999999999999999999999999988889999999999999999999999999999999888874 


Q ss_pred             CCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccc
Q 021311          159 RAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS  237 (314)
Q Consensus       159 ~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  237 (314)
                         +.++.+.++.+|.+.+++.+... ...+...+.+.+ +|++++|.++.....++++++++|+++.+|........++
T Consensus       178 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  253 (328)
T cd08268         178 ---TSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKG-VDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGEPTPFP  253 (328)
T ss_pred             ---CHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCC-ceEEEECCchHhHHHHHHhhccCCEEEEEEeCCCCCCCCc
Confidence               56777788888988888776543 355666666655 9999999999777889999999999999985443323333


Q ss_pred             cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ....+.+++++.+..+....  ..+......++.+.+++.++.+.+. +..|+++++.++++.+.+++..+ |+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vv~~~  328 (328)
T cd08268         254 LKAALKKSLTFRGYSLDEIT--LDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIG-KIVVTP  328 (328)
T ss_pred             hHHHhhcCCEEEEEeccccc--CCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCc-eEEEeC
Confidence            34356788988887765432  3456677788888888989988765 56799999999999999887777 998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=100.00  E-value=1.5e-35  Score=257.65  Aligned_cols=305  Identities=24%  Similarity=0.282  Sum_probs=251.7

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      +.+.|.+++++|+|++.++++|+.|+....+.++....+|..+|||++|+|+.+|+.+..+++||+|.++.. .|+|++|
T Consensus        19 ~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~-~~~~~~~   97 (325)
T TIGR02824        19 EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVA-GGGYAEY   97 (325)
T ss_pred             eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEccC-CCcceeE
Confidence            344556889999999999999999998887766543356789999999999999999999999999999853 3899999


Q ss_pred             EeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc
Q 021311           83 VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS  162 (314)
Q Consensus        83 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~  162 (314)
                      +.++.+.++++|+++++..+++++.++.+||+++.+...++++++++|+|++|.+|++++++++..|++++.+.+    +
T Consensus        98 ~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~----~  173 (325)
T TIGR02824        98 VAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG----S  173 (325)
T ss_pred             EEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC----C
Confidence            999999999999999999999999999999999888899999999999999999999999999999999988874    5


Q ss_pred             HHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccc
Q 021311          163 DEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF  241 (314)
Q Consensus       163 ~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  241 (314)
                      +++.+.++.+|.+.+++.... ..+.++....+.+ +|++++|+|+.....++++++++|+++.+|........+++..+
T Consensus       174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  252 (325)
T TIGR02824       174 DEKCAACEALGADIAINYREEDFVEVVKAETGGKG-VDVILDIVGGSYLNRNIKALALDGRIVQIGFQGGRKAELDLGPL  252 (325)
T ss_pred             HHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCC-eEEEEECCchHHHHHHHHhhccCcEEEEEecCCCCcCCCChHHH
Confidence            667777788998888776653 3355776666555 99999999987778899999999999999854322223444445


Q ss_pred             eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.+++++.+...........+......+..+++++.++.+.+. ++.+++++++++++.+.+++..+ |+++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~  325 (325)
T TIGR02824       253 LAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIG-KIVLTV  325 (325)
T ss_pred             HhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcc-eEEEeC
Confidence            5789999998765432222334455677888999999988754 67799999999999999887777 998864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=8.6e-36  Score=263.21  Aligned_cols=293  Identities=24%  Similarity=0.277  Sum_probs=230.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~------   73 (314)
                      ++.+.|+++++||+||+.++++|++|+....+....  ...+|.++|||++|+|+++|+++..|++||+|++..      
T Consensus        32 ~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~  111 (364)
T PLN02702         32 QPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWR  111 (364)
T ss_pred             EeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCCCCCC
Confidence            466778889999999999999999999988763211  113577899999999999999999999999998721      


Q ss_pred             ---------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcC
Q 021311           74 ---------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNG  132 (314)
Q Consensus        74 ---------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g  132 (314)
                                           ...|+|++|++++.+.++++|++++++++++. .++.++|+++ +..++.++++++|+|
T Consensus       112 c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g  189 (364)
T PLN02702        112 CNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMG  189 (364)
T ss_pred             CcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC
Confidence                                 11489999999999999999999999988763 2456688887 568899999999997


Q ss_pred             CCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC---hhhHHHHHHH--hcCCCCCcEEEecCCC
Q 021311          133 ATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES---QLEVKNVKGL--LANLPEPALGFNCVGG  207 (314)
Q Consensus       133 ~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~---~~~~~~i~~~--~~~~g~~d~v~d~~g~  207 (314)
                      + |++|++++++|+.+|++.+++++.   ++++.+.++++|++.++++.   ....+.+..+  ..+. ++|++|||.|+
T Consensus       190 ~-g~vG~~~~~~a~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vid~~g~  264 (364)
T PLN02702        190 A-GPIGLVTMLAARAFGAPRIVIVDV---DDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGG-GIDVSFDCVGF  264 (364)
T ss_pred             C-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCC-CCCEEEECCCC
Confidence            6 999999999999999987666653   67788888999999887653   2233445443  2233 49999999995


Q ss_pred             -ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---
Q 021311          208 -NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---  283 (314)
Q Consensus       208 -~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---  283 (314)
                       .....++++++++|+++.+|.... ...+.......+++++.+++..           ...++.++++++++.+.+   
T Consensus       265 ~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~  332 (364)
T PLN02702        265 NKTMSTALEATRAGGKVCLVGMGHN-EMTVPLTPAAAREVDVVGVFRY-----------RNTWPLCLEFLRSGKIDVKPL  332 (364)
T ss_pred             HHHHHHHHHHHhcCCEEEEEccCCC-CCcccHHHHHhCccEEEEeccC-----------hHHHHHHHHHHHcCCCCchHh
Confidence             556899999999999999995433 2334445566788888886532           134677899999998863   


Q ss_pred             cceeecc--ccHHHHHHHHhccCCCCCceEeeC
Q 021311          284 DMELVPF--NNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       284 ~~~~~~~--~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++.|++  +++++|++.+.+++..+ |++|.+
T Consensus       333 ~~~~~~l~~~~~~~a~~~~~~~~~~~-kvv~~~  364 (364)
T PLN02702        333 ITHRFGFSQKEVEEAFETSARGGNAI-KVMFNL  364 (364)
T ss_pred             eEEEeccChHHHHHHHHHHhcCCCce-EEEEeC
Confidence            2456555  79999999999887766 999863

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=6.7e-36  Score=261.78  Aligned_cols=293  Identities=23%  Similarity=0.274  Sum_probs=229.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCC-C-CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVY-P-VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~-~-~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      .++|.|.|+++||+||+.++++|++|+.++.+.. . ....+|.++|||++|+|+++|++++.+++||+|++...     
T Consensus        16 ~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   95 (341)
T PRK05396         16 TDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGH   95 (341)
T ss_pred             EECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCC
Confidence            5778899999999999999999999998765531 1 12246788999999999999999999999999998621     


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                           ..|+|++|+.++.+.++++|+++++++++++ ..+.++++++..  ...+|++|+|.|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~  172 (341)
T PRK05396         96 CRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGA  172 (341)
T ss_pred             ChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECC
Confidence                                 2589999999999999999999999988754 466777766543  3468999999876


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCcc-HH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNS-AS  211 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~-~~  211 (314)
                       |++|++++++|+.+|++.+.+++   .++++.+.++++|+++++++++.. .+.++.++.+.+ +|++|||.|+.. ..
T Consensus       173 -g~vg~~~~~la~~~G~~~v~~~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~d~v~d~~g~~~~~~  247 (341)
T PRK05396        173 -GPIGIMAAAVAKHVGARHVVITD---VNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEG-FDVGLEMSGAPSAFR  247 (341)
T ss_pred             -CHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCC-CCEEEECCCCHHHHH
Confidence             99999999999999995444443   367888888999999999887654 355777776665 999999998754 58


Q ss_pred             HHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcC-Ccccc-ceeec
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG-KLKYD-MELVP  289 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~~-~~~~~  289 (314)
                      ..+++++++|+++.+|... ...++....++.+++++.++....         ....+..+++++.++ ++.+. ++.++
T Consensus       248 ~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (341)
T PRK05396        248 QMLDNMNHGGRIAMLGIPP-GDMAIDWNKVIFKGLTIKGIYGRE---------MFETWYKMSALLQSGLDLSPIITHRFP  317 (341)
T ss_pred             HHHHHHhcCCEEEEEecCC-CCCcccHHHHhhcceEEEEEEccC---------ccchHHHHHHHHHcCCChhHheEEEEe
Confidence            8999999999999998543 223333455666788887764211         113345677888888 34333 46799


Q ss_pred             cccHHHHHHHHhccCCCCCceEeeC
Q 021311          290 FNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++|+.+.+++ .+ |++++|
T Consensus       318 l~~~~~a~~~~~~~~-~g-k~vv~~  340 (341)
T PRK05396        318 IDDFQKGFEAMRSGQ-SG-KVILDW  340 (341)
T ss_pred             HHHHHHHHHHHhcCC-Cc-eEEEec
Confidence            999999999999876 66 999876

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.5e-35  Score=257.93  Aligned_cols=302  Identities=23%  Similarity=0.294  Sum_probs=250.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC----CCC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP----SSG   77 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~----~~g   77 (314)
                      ++.+.|.+.+++|+|++.++++|+.|.....+.....+..|..+|||++|+|+.+|+++..+++||+|.++..    ..|
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g   97 (326)
T cd08272          18 REVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQG   97 (326)
T ss_pred             eecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCCcCCCCC
Confidence            3556677899999999999999999999887765433346789999999999999999999999999999752    147


Q ss_pred             cccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311           78 TWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus        78 ~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +|++|+.++.+.++++|+++++..++.++..+.+||+++.+.++++++++++|+|+++.+|++++++++..|++++.+++
T Consensus        98 ~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~  177 (326)
T cd08272          98 SLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS  177 (326)
T ss_pred             ceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec
Confidence            89999999999999999999999999999999999999888899999999999999899999999999999999988873


Q ss_pred             CCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccc
Q 021311          158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS  237 (314)
Q Consensus       158 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  237 (314)
                          + ++.+.++.+|.+.+++......+.++..+.+.+ +|+++||.++......+++++++|+++.++...  ...+.
T Consensus       178 ----~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~--~~~~~  249 (326)
T cd08272         178 ----S-EKAAFARSLGADPIIYYRETVVEYVAEHTGGRG-FDVVFDTVGGETLDASFEAVALYGRVVSILGGA--THDLA  249 (326)
T ss_pred             ----h-HHHHHHHHcCCCEEEecchhHHHHHHHhcCCCC-CcEEEECCChHHHHHHHHHhccCCEEEEEecCC--ccchh
Confidence                5 777888889998888876654456777777666 999999999877788999999999999998543  22222


Q ss_pred             cccceecceEEEEEechh-hccccCHHHHHHHHHHHHHHHHcCCcccc-c-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          238 TSAFIFKDLSLKGFWLQK-WLSSEKATECRNMIDYLLCLAREGKLKYD-M-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                        ....+++++.+..+.. +....++......++.+++++.++.+.+. + +.|++++++++++.+.+++..+ |+++++
T Consensus       250 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vv~~~  326 (326)
T cd08272         250 --PLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARG-KIVIDV  326 (326)
T ss_pred             --hHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCccc-EEEEEC
Confidence              2235778888776432 11223455566788999999999998865 3 7899999999999999887777 999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.8e-35  Score=257.94  Aligned_cols=281  Identities=25%  Similarity=0.285  Sum_probs=229.9

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--------
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--------   74 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--------   74 (314)
                      +.+.|.++++||+||+.++++|++|+....|.++. ..+|..+|||++|+|+++|+++.++++||+|.+.+.        
T Consensus        21 ~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~   99 (329)
T cd08298          21 EVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECR   99 (329)
T ss_pred             eccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCCh
Confidence            56667789999999999999999999998887654 356889999999999999999999999999986210        


Q ss_pred             -------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           75 -------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                         .+|+|++|+.++.+.++++|+++++.+++.++.++.|||+++ +.++++++++++|+|+ |
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~-g  177 (329)
T cd08298         100 YCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGF-G  177 (329)
T ss_pred             hHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECC-c
Confidence                               158999999999999999999999999999999999999999 7799999999999985 9


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC-ccHHHHH
Q 021311          136 IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG-NSASKVL  214 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~~  214 (314)
                      ++|++++++++..|++++++++    ++++++.++++|++++++....         .+. ++|+++++.+. ..+..++
T Consensus       178 ~vg~~~~~la~~~g~~v~~~~~----~~~~~~~~~~~g~~~~~~~~~~---------~~~-~vD~vi~~~~~~~~~~~~~  243 (329)
T cd08298         178 ASAHLALQIARYQGAEVFAFTR----SGEHQELARELGADWAGDSDDL---------PPE-PLDAAIIFAPVGALVPAAL  243 (329)
T ss_pred             HHHHHHHHHHHHCCCeEEEEcC----ChHHHHHHHHhCCcEEeccCcc---------CCC-cccEEEEcCCcHHHHHHHH
Confidence            9999999999999999988874    6678888899999888876542         123 49999998665 4458999


Q ss_pred             HhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccHH
Q 021311          215 KFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQ  294 (314)
Q Consensus       215 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~  294 (314)
                      ++++++|+++.+|........++... +.++..+.+....          ..+.++.+++++.++.+++.++.|++++++
T Consensus       244 ~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----------~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~  312 (329)
T cd08298         244 RAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANL----------TRQDGEEFLKLAAEIPIKPEVETYPLEEAN  312 (329)
T ss_pred             HHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCC----------CHHHHHHHHHHHHcCCCCceEEEEeHHHHH
Confidence            99999999998874322111122222 3355566554321          224578888999999988777889999999


Q ss_pred             HHHHHHhccCCCCCceEe
Q 021311          295 TALSKALGLHGSQPKQVI  312 (314)
Q Consensus       295 ~a~~~~~~~~~~~~k~vi  312 (314)
                      +|++.+.+++..+ |+|+
T Consensus       313 ~a~~~~~~~~~~~-~~v~  329 (329)
T cd08298         313 EALQDLKEGRIRG-AAVL  329 (329)
T ss_pred             HHHHHHHcCCCcc-eeeC
Confidence            9999999988887 8764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=3.4e-35  Score=257.17  Aligned_cols=292  Identities=25%  Similarity=0.279  Sum_probs=230.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCC--CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYP--VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~--~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~------   73 (314)
                      ++.|.|.|+++||+||+.++++|+.|+.++.+...  ....+|.++|+|++|+|+.+|++++.+++||+|++..      
T Consensus        14 ~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   93 (340)
T TIGR00692        14 TEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGK   93 (340)
T ss_pred             EECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEECCcCCCCC
Confidence            57788899999999999999999999987655311  1113567899999999999999999999999998831      


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ...|+|++|++++++.++++|++++.+++ +++.++.+||+++  ....++|++++|.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~~  170 (340)
T TIGR00692        94 CYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGPISGKSVLVTGA  170 (340)
T ss_pred             ChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccCCCCCEEEEECC
Confidence                                02589999999999999999999998655 5667889999887  355789999999875


Q ss_pred             CcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCc-cH
Q 021311          134 TSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGN-SA  210 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~-~~  210 (314)
                       |.+|++++++|+.+|++ ++++ +   +++++.+.++++|+++++++.+. ..+.+.+++++.+ +|+++||.|+. ..
T Consensus       171 -g~vg~~a~~la~~~G~~~v~~~-~---~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~-~d~vld~~g~~~~~  244 (340)
T TIGR00692       171 -GPIGLMAIAVAKASGAYPVIVS-D---PNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEG-VDVFLEMSGAPKAL  244 (340)
T ss_pred             -CHHHHHHHHHHHHcCCcEEEEE-C---CCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCC-CCEEEECCCCHHHH
Confidence             99999999999999997 5555 3   37888888899999888887654 3466777776665 99999998864 45


Q ss_pred             HHHHHhcccCCEEEEEcCCCCCCcccccc-cceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---cce
Q 021311          211 SKVLKFLSQGGTMVTYGGMSKKPITVSTS-AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---DME  286 (314)
Q Consensus       211 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~~  286 (314)
                      ...+++|+++|+++.+|.... ..++... .++.+++++.+....         ...+.+..++++++++.+++   .++
T Consensus       245 ~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~  314 (340)
T TIGR00692       245 EQGLQAVTPGGRVSLLGLPPG-KVTIDFTNKVIFKGLTIYGITGR---------HMFETWYTVSRLIQSGKLDLDPIITH  314 (340)
T ss_pred             HHHHHhhcCCCEEEEEccCCC-CcccchhhhhhhcceEEEEEecC---------CchhhHHHHHHHHHcCCCChHHheee
Confidence            888999999999999986432 2222222 445567777665421         11245678899999999873   356


Q ss_pred             eeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          287 LVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       287 ~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++++++.++++.+.+++ .| |+|++|
T Consensus       315 ~~~l~~~~~a~~~~~~~~-~g-kvvv~~  340 (340)
T TIGR00692       315 KFKFDKFEKGFELMRSGQ-TG-KVILSL  340 (340)
T ss_pred             eeeHHHHHHHHHHHhcCC-Cc-eEEEeC
Confidence            799999999999999876 46 999986

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.5e-35  Score=257.29  Aligned_cols=275  Identities=21%  Similarity=0.260  Sum_probs=223.0

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      +++++.|+++++||+||+.++++|++|.....+.++    +|.++|||++|+|+++|++   +++||+|....       
T Consensus        14 ~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~~G~~V~~~~~~~~~~~   86 (319)
T cd08242          14 VEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---ELVGKRVVGEINIACGRC   86 (319)
T ss_pred             EEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CCCCCeEEECCCcCCCCC
Confidence            357899999999999999999999999998888654    4789999999999999998   67999997421       


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ..+|+|++|++++.+.++++|++++.++++.+ .+..++|..+ +..+++++++|||+|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~-~~~~~~~g~~vlV~g~  164 (319)
T cd08242          87 EYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL-EQVPITPGDKVAVLGD  164 (319)
T ss_pred             hhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECC
Confidence                                12589999999999999999999999988864 3455666655 5588999999999985


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCc-cHHH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN-SASK  212 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~-~~~~  212 (314)
                       |.+|++++|+|+.+|+++++++.    ++++++.++++|++.+++++..        +.+. ++|+++||.|+. ....
T Consensus       165 -g~vg~~~~q~a~~~G~~vi~~~~----~~~~~~~~~~~g~~~~~~~~~~--------~~~~-~~d~vid~~g~~~~~~~  230 (319)
T cd08242         165 -GKLGLLIAQVLALTGPDVVLVGR----HSEKLALARRLGVETVLPDEAE--------SEGG-GFDVVVEATGSPSGLEL  230 (319)
T ss_pred             -CHHHHHHHHHHHHcCCeEEEEcC----CHHHHHHHHHcCCcEEeCcccc--------ccCC-CCCEEEECCCChHHHHH
Confidence             99999999999999999877763    6788899999999988877542        2334 499999999885 4588


Q ss_pred             HHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcc--c-cceeec
Q 021311          213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK--Y-DMELVP  289 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--~-~~~~~~  289 (314)
                      ++++++++|+++..+... ....++...+..++.++.+.+...             ++.+++++.+++++  + .++.|+
T Consensus       231 ~~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~  296 (319)
T cd08242         231 ALRLVRPRGTVVLKSTYA-GPASFDLTKAVVNEITLVGSRCGP-------------FAPALRLLRKGLVDVDPLITAVYP  296 (319)
T ss_pred             HHHHhhcCCEEEEEcccC-CCCccCHHHheecceEEEEEeccc-------------HHHHHHHHHcCCCChhhceEEEEe
Confidence            899999999999876433 234445555667888888765421             57788999999984  3 257899


Q ss_pred             cccHHHHHHHHhccCCCCCceEeeC
Q 021311          290 FNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++++||+.+.++. .+ |+||++
T Consensus       297 l~~~~~a~~~~~~~~-~~-k~vi~~  319 (319)
T cd08242         297 LEEALEAFERAAEPG-AL-KVLLRP  319 (319)
T ss_pred             HHHHHHHHHHHhcCC-ce-EEEeCC
Confidence            999999999998765 45 999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=100.00  E-value=3.1e-35  Score=256.41  Aligned_cols=293  Identities=25%  Similarity=0.299  Sum_probs=236.2

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~   79 (314)
                      ++++.|++.+++|+||+.++++|+.|.....+....  +...+..+|+|++|+|+++|++  .+++||+|+++    ++|
T Consensus        23 ~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~----~~~   96 (329)
T cd05288          23 VEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSGF----LGW   96 (329)
T ss_pred             EeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEecc----cce
Confidence            567888899999999999999999887655543211  1123467899999999999964  79999999986    489


Q ss_pred             cceEeeec-cceEEcCCCCC--HHHhhc-ccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEE
Q 021311           80 QSYVVKDQ-SVWHKVSKDSP--MEYAAT-IIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI  155 (314)
Q Consensus        80 ~~~~~~~~-~~~~~~p~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~  155 (314)
                      ++|+.++. +.++++|++++  +..++. +++++.|||+++.+...+.++++|||+|++|.+|++++++|+..|++++.+
T Consensus        97 ~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~  176 (329)
T cd05288          97 QEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGI  176 (329)
T ss_pred             EEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEE
Confidence            99999999 99999999995  555555 888999999999887889999999999988999999999999999998888


Q ss_pred             ecCCCCcHHHHHHHHh-CCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC
Q 021311          156 IRDRAGSDEAKEKLKG-LGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP  233 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~~-lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  233 (314)
                      ++    ++++.+.+++ +|++.++++++. ..+.+..+++ . ++|++|||+|+.....++++++++|+++.+|......
T Consensus       177 ~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~-~-~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  250 (329)
T cd05288         177 AG----SDEKCRWLVEELGFDAAINYKTPDLAEALKEAAP-D-GIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYN  250 (329)
T ss_pred             eC----CHHHHHHHHhhcCCceEEecCChhHHHHHHHhcc-C-CceEEEEcchHHHHHHHHHhcCCCceEEEEeeccCcc
Confidence            74    6778888887 999999988764 3456776664 3 4999999999987889999999999999998654332


Q ss_pred             cc-----cccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCC
Q 021311          234 IT-----VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQ  307 (314)
Q Consensus       234 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~  307 (314)
                      ..     +.....+.+++++.++.+..+     .....+.+..+++++.+|.+++. ...++++++.++++.+.+++..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~g  325 (329)
T cd05288         251 ATEPPGPKNLGNIITKRLTMQGFIVSDY-----ADRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTG  325 (329)
T ss_pred             cccccccccHHHHhhCcceEEeecchhh-----HHHHHHHHHHHHHHHHCCCccccccccccHHHHHHHHHHHhcCCCcc
Confidence            21     223445568888888765432     12345678889999999998864 45689999999999999887776


Q ss_pred             CceEe
Q 021311          308 PKQVI  312 (314)
Q Consensus       308 ~k~vi  312 (314)
                       |+++
T Consensus       326 -kvvv  329 (329)
T cd05288         326 -KLVV  329 (329)
T ss_pred             -ceeC
Confidence             8764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=4.8e-35  Score=255.78  Aligned_cols=286  Identities=24%  Similarity=0.327  Sum_probs=231.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      .+.+.|++.++||+||+.++++|+.|+....|.++.  .+|..+|+|++|+|+++|+.++.+++||+|++...       
T Consensus        15 ~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~   92 (334)
T cd08234          15 EEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECF   92 (334)
T ss_pred             EeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCCc
Confidence            467889999999999999999999999998887653  36889999999999999999999999999987210       


Q ss_pred             -------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           75 -------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        75 -------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                         ..|+|++|+.++.+.++++|+++++.+++.+ ..+.++++++ ..++++++++|||+|+ |
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~-g  169 (334)
T cd08234          93 YCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGA-G  169 (334)
T ss_pred             cccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECC-C
Confidence                               2589999999999999999999999998876 6788999998 6689999999999986 9


Q ss_pred             HHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCc-cHHH
Q 021311          136 IVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGN-SASK  212 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~-~~~~  212 (314)
                      .+|++++++|+..|++ ++++.+    ++++.+.++++|.+.++++.+... .+  ..+.+.+ +|++|||.+.. ....
T Consensus       170 ~vg~~~~~la~~~G~~~v~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~-vd~v~~~~~~~~~~~~  242 (334)
T cd08234         170 PIGLLLAQLLKLNGASRVTVAEP----NEEKLELAKKLGATETVDPSREDPEAQ--KEDNPYG-FDVVIEATGVPKTLEQ  242 (334)
T ss_pred             HHHHHHHHHHHHcCCcEEEEECC----CHHHHHHHHHhCCeEEecCCCCCHHHH--HHhcCCC-CcEEEECCCChHHHHH
Confidence            9999999999999998 555552    677788888899988888765432 22  3444444 99999999864 4588


Q ss_pred             HHHhcccCCEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ceee
Q 021311          213 VLKFLSQGGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---MELV  288 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~  288 (314)
                      .+++|+++|+++.+|.... ...++.....+.+++++.+....           ...++.+++++.++++.+.   ...+
T Consensus       243 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~  311 (334)
T cd08234         243 AIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN-----------PYTFPRAIALLESGKIDVKGLVSHRL  311 (334)
T ss_pred             HHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC-----------HHHHHHHHHHHHcCCCChhhhEEEEe
Confidence            8999999999999985443 12333333334467777776431           2357888899999998752   4679


Q ss_pred             ccccHHHHHHHHhccCCCCCceEe
Q 021311          289 PFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       289 ~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      ++++++++++.+.+ +..+ |+|+
T Consensus       312 ~~~~~~~a~~~~~~-~~~~-k~vi  333 (334)
T cd08234         312 PLEEVPEALEGMRS-GGAL-KVVV  333 (334)
T ss_pred             cHHHHHHHHHHHhc-CCce-EEEe
Confidence            99999999999998 6666 8876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=4.3e-35  Score=255.60  Aligned_cols=288  Identities=26%  Similarity=0.302  Sum_probs=236.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      ++.|.|.+.+++|+|++.++++|++|+....+.++. ..+|..+|||++|+|+++|+.++.+++||+|+...        
T Consensus        15 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~   93 (330)
T cd08245          15 EEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRC   93 (330)
T ss_pred             EeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccccCCEEEEccccCCCCCC
Confidence            577888899999999999999999999998887643 35688999999999999999999999999998421        


Q ss_pred             -------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           74 -------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        74 -------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                                         ...|+|++|+.++.+.++++|+++++.+++.++..+.+||+++.. .+++++++|||+|+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~-  171 (330)
T cd08245          94 EYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGI-  171 (330)
T ss_pred             hhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECC-
Confidence                               025899999999999999999999999999999999999999976 78999999999976 


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC-ccHHHH
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG-NSASKV  213 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~  213 (314)
                      |.+|++++++|+..|++++++++    ++++.+.++++|++.+++......  ... .. . ++|+++||.+. .....+
T Consensus       172 g~iG~~~~~~a~~~G~~v~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~--~~~-~~-~-~~d~vi~~~~~~~~~~~~  242 (330)
T cd08245         172 GGLGHLAVQYARAMGFETVAITR----SPDKRELARKLGADEVVDSGAELD--EQA-AA-G-GADVILVTVVSGAAAEAA  242 (330)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhCCcEEeccCCcch--HHh-cc-C-CCCEEEECCCcHHHHHHH
Confidence            77999999999999999888874    677788888899988887654332  111 22 2 49999999875 455889


Q ss_pred             HHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccH
Q 021311          214 LKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNF  293 (314)
Q Consensus       214 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~  293 (314)
                      +++++++|+++.++.............++.++.++.++....          .+.++.+++++.++.+.+.++.++++++
T Consensus       243 ~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ll~~~~l~~~~~~~~~~~~  312 (330)
T cd08245         243 LGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGG----------RADLQEALDFAAEGKVKPMIETFPLDQA  312 (330)
T ss_pred             HHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCC----------HHHHHHHHHHHHcCCCcceEEEEcHHHH
Confidence            999999999999985433322222334556777887775432          2467788899999999877788999999


Q ss_pred             HHHHHHHhccCCCCCceEe
Q 021311          294 QTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       294 ~~a~~~~~~~~~~~~k~vi  312 (314)
                      +++|+.+.+++..+ |+|+
T Consensus       313 ~~a~~~~~~~~~~~-~~v~  330 (330)
T cd08245         313 NEAYERMEKGDVRF-RFVL  330 (330)
T ss_pred             HHHHHHHHcCCCCc-ceeC
Confidence            99999999988887 8774

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=9e-36  Score=262.01  Aligned_cols=302  Identities=27%  Similarity=0.303  Sum_probs=230.5

Q ss_pred             CccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCC--------------CCCCCCccCCcceEEEEEEecCCCCCCCC
Q 021311            1 MIELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYP--------------VRPKVPAVGGYEGVGEVYSVGSAVTRLAP   65 (314)
Q Consensus         1 i~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~--------------~~~~~p~~~G~e~~G~V~~~G~~v~~~~~   65 (314)
                      ++|++.|+| +++||+|++.++++|+.|+....+...              ....+|.++|||++|+|+.+|+++..+++
T Consensus        18 ~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~vG~~v~~~~~   97 (350)
T cd08248          18 LENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEI   97 (350)
T ss_pred             ecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEecCCCcccCCC
Confidence            467888989 499999999999999999998877421              02356889999999999999999999999


Q ss_pred             CCEEeeCCC--CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCC----CCEEEEcCCCcHHHH
Q 021311           66 GDWVIPSPP--SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNS----GDSIVQNGATSIVGQ  139 (314)
Q Consensus        66 Gd~V~~~~~--~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~----~~~vlI~g~~g~~G~  139 (314)
                      ||+|++...  ..|+|++|+.++++.++++|++++++.++.+++.+.|||+++.+.+.+.+    |++++|+|++|.+|+
T Consensus        98 Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~  177 (350)
T cd08248          98 GDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGT  177 (350)
T ss_pred             CCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHH
Confidence            999998642  25899999999999999999999999999999999999999988777754    999999999899999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcc
Q 021311          140 CIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLS  218 (314)
Q Consensus       140 ~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~  218 (314)
                      +++++|+.+|++++++++     .++.+.++.+|.+++++..+.. .+.+.   ... ++|++|||.|+.....++++++
T Consensus       178 ~~~~~a~~~G~~v~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~l~---~~~-~vd~vi~~~g~~~~~~~~~~l~  248 (350)
T cd08248         178 FAIQLLKAWGAHVTTTCS-----TDAIPLVKSLGADDVIDYNNEDFEEELT---ERG-KFDVILDTVGGDTEKWALKLLK  248 (350)
T ss_pred             HHHHHHHHCCCeEEEEeC-----cchHHHHHHhCCceEEECCChhHHHHHH---hcC-CCCEEEECCChHHHHHHHHHhc
Confidence            999999999999888773     2466778889998888876532 23332   333 4999999999987789999999


Q ss_pred             cCCEEEEEcCCCCCCc---ccccccceecceEEEEEechhhcc-----ccCHHHHHHHHHHHHHHHHcCCcccc-ceeec
Q 021311          219 QGGTMVTYGGMSKKPI---TVSTSAFIFKDLSLKGFWLQKWLS-----SEKATECRNMIDYLLCLAREGKLKYD-MELVP  289 (314)
Q Consensus       219 ~~G~~v~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~  289 (314)
                      ++|+++.+|.......   .+.... +..++++..........     ..........++.+++++.+|.+.+. ++.|+
T Consensus       249 ~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  327 (350)
T cd08248         249 KGGTYVTLVSPLLKNTDKLGLVGGM-LKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFP  327 (350)
T ss_pred             cCCEEEEecCCcccccccccccchh-hhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeec
Confidence            9999999985432111   010000 00111111000000000     00001124568889999999998765 56899


Q ss_pred             cccHHHHHHHHhccCCCCCceEee
Q 021311          290 FNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ++++.++++.+.+++..+ |++++
T Consensus       328 ~~~~~~a~~~~~~~~~~~-~vv~~  350 (350)
T cd08248         328 FEEVPEAYEKVESGHARG-KTVIK  350 (350)
T ss_pred             HHHHHHHHHHHhcCCCce-EEEeC
Confidence            999999999999887766 88763

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.7e-34  Score=249.92  Aligned_cols=301  Identities=26%  Similarity=0.314  Sum_probs=243.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--CCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--SSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~~g~~   79 (314)
                      +++|.|++.+++|+||+.++++|+.|+....+.+... ..|..+|||++|+|+.+|+.+..+++||+|.++..  ..|+|
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~   96 (325)
T cd08271          18 EEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAW-SYPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSF   96 (325)
T ss_pred             eccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCcccccceEEEEEEeCCCCCcCCCCCEEEeccCCCCCccc
Confidence            5678889999999999999999999998887765321 23678999999999999999999999999999841  14899


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      ++|+.++.+.++++|+++++.+++.+.+.+.+||+++.+.+++++|++++|+|+++.+|++++++++..|++++.++   
T Consensus        97 ~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~---  173 (325)
T cd08271          97 AEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC---  173 (325)
T ss_pred             eeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE---
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999988776   


Q ss_pred             CCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccc
Q 021311          160 AGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVST  238 (314)
Q Consensus       160 ~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  238 (314)
                        +.++.+.+..+|.+.+++.... ..+.++..+.+.+ +|++++|+++......+++++++|+++.++......    .
T Consensus       174 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~----~  246 (325)
T cd08271         174 --SKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRG-VDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDAS----P  246 (325)
T ss_pred             --cHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCC-CcEEEECCCcHhHHHHHHhhccCCEEEEEcCCCCCc----c
Confidence              3456677788999888877654 3456777777666 999999999877778899999999999987443221    1


Q ss_pred             ccceecceEEEEEechhhccccC---HHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          239 SAFIFKDLSLKGFWLQKWLSSEK---ATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ...+.+++.+....+........   .....+.+..+++++.++.+.+. ++.++++++.++++.+.+++..+ |+++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~-kiv~~~  325 (325)
T cd08271         247 DPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRG-KIVVTI  325 (325)
T ss_pred             hhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccc-eEEEEC
Confidence            11123334444333322111111   13456778889999999998764 67899999999999999888777 998874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=100.00  E-value=9.8e-35  Score=255.51  Aligned_cols=301  Identities=25%  Similarity=0.298  Sum_probs=225.0

Q ss_pred             cCCCCCC---CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCC-CCCCCCEEeeCCC----
Q 021311            3 ELPPVEV---KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT-RLAPGDWVIPSPP----   74 (314)
Q Consensus         3 ~~~~p~~---~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~~~----   74 (314)
                      +++.|.|   .+++|+||+.++++|+.|+....+........|.++|+|++|+|+++|+.++ .|++||+|+++..    
T Consensus        17 ~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~   96 (352)
T cd08247          17 TIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYG   96 (352)
T ss_pred             ccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCCCCCCEEEEeecCCCC
Confidence            3444444   8999999999999999998877543221112478899999999999999998 8999999998742    


Q ss_pred             CCCcccceEeeecc----ceEEcCCCCCHHHhhcccccHHHHHHHHHHhh-cCCCCCEEEEcCCCcHHHHHHHHHHHHcC
Q 021311           75 SSGTWQSYVVKDQS----VWHKVSKDSPMEYAATIIVNPLTALRMLEDFT-TLNSGDSIVQNGATSIVGQCIIQIARHRG  149 (314)
Q Consensus        75 ~~g~~~~~~~~~~~----~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~g~~g~~G~~a~~la~~~g  149 (314)
                      ..|+|++|++++.+    .++++|+++++++++.++..+.|||+++.+.+ ++++|++++|+|+++.+|++++++|+..|
T Consensus        97 ~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~  176 (352)
T cd08247          97 GQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHY  176 (352)
T ss_pred             CCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcC
Confidence            14899999999987    79999999999999999999999999998877 79999999999999999999999999874


Q ss_pred             -C-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh----HHHHHHHhc-CCCCCcEEEecCCC-ccHHHHHHhcc---
Q 021311          150 -I-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE----VKNVKGLLA-NLPEPALGFNCVGG-NSASKVLKFLS---  218 (314)
Q Consensus       150 -~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~i~~~~~-~~g~~d~v~d~~g~-~~~~~~~~~l~---  218 (314)
                       . .++.+.     ++++.+.++++|+++++++++..    ..++.+.+. +.+ +|++|||.|+ .....++++++   
T Consensus       177 ~~~~v~~~~-----~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~d~vl~~~g~~~~~~~~~~~l~~~~  250 (352)
T cd08247         177 NIGTVVGTC-----SSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGK-FDLILDCVGGYDLFPHINSILKPKS  250 (352)
T ss_pred             CcceEEEEe-----ChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCC-ceEEEECCCCHHHHHHHHHHhCccC
Confidence             4 455554     34445577889999999876543    445555444 444 9999999998 45578899999   


Q ss_pred             cCCEEEEEcCCCCCCccc-c---------cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-cee
Q 021311          219 QGGTMVTYGGMSKKPITV-S---------TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MEL  287 (314)
Q Consensus       219 ~~G~~v~~g~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~  287 (314)
                      ++|+++.++.....+... .         ....+.++.++.........  ..+.  .+.++.+++++.++.+.+. ++.
T Consensus       251 ~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~~~~~  326 (352)
T cd08247         251 KNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFL--LDPN--ADWIEKCAELIADGKVKPPIDSV  326 (352)
T ss_pred             CCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEE--ecCC--HHHHHHHHHHHhCCCeEeeeccE
Confidence            999999875332211110 0         00111122222221111100  0111  2567888899999998864 568


Q ss_pred             eccccHHHHHHHHhccCCCCCceEeeC
Q 021311          288 VPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       288 ~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++++|+.+.+++..+ |+++++
T Consensus       327 ~~l~~~~~a~~~~~~~~~~g-kvvi~~  352 (352)
T cd08247         327 YPFEDYKEAFERLKSNRAKG-KVVIKV  352 (352)
T ss_pred             ecHHHHHHHHHHHHcCCCCC-cEEEeC
Confidence            99999999999999988777 999874

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=100.00  E-value=3.1e-34  Score=245.36  Aligned_cols=288  Identities=26%  Similarity=0.299  Sum_probs=240.1

Q ss_pred             CcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccceEeeeccceE
Q 021311           12 NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWH   91 (314)
Q Consensus        12 ~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~   91 (314)
                      +||+||+.++++|+.|+....+.++   .+|.++|||++|+|+++|+++..+++||+|.++.  .|+|++|+.++.+.++
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~--~g~~~~~~~~~~~~~~   75 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA--PGAFATHVRVDARLVV   75 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe--cCcccceEEechhheE
Confidence            5899999999999999998887652   4578999999999999999999999999999986  5899999999999999


Q ss_pred             EcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh
Q 021311           92 KVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG  171 (314)
Q Consensus        92 ~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~  171 (314)
                      ++|+++++.+++.++.++.++|+++.+...+++|++++|+|++|.+|++++++++..|++++.+++    +.++.+.++.
T Consensus        76 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~  151 (293)
T cd05195          76 KIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVG----SEEKREFLRE  151 (293)
T ss_pred             eCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHH
Confidence            999999999999999999999999988889999999999998899999999999999999888874    5677788888


Q ss_pred             CC--CcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC-cccccccceecceE
Q 021311          172 LG--ADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP-ITVSTSAFIFKDLS  247 (314)
Q Consensus       172 lg--~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~  247 (314)
                      ++  ++.++++.+. ..+++++.+.+.+ +|+++||.++.....++++++++|+++.+|...... ..+.. ..+.++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~-~~~~~~~~  229 (293)
T cd05195         152 LGGPVDHIFSSRDLSFADGILRATGGRG-VDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSNSKLGM-RPFLRNVS  229 (293)
T ss_pred             hCCCcceEeecCchhHHHHHHHHhCCCC-ceEEEeCCCchHHHHHHHhcccCceEEEeeccccccCCccch-hhhccCCe
Confidence            87  6778877654 4466777777666 999999999987899999999999999998544321 11222 22345677


Q ss_pred             EEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          248 LKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      +....+..+.. ..+....+.+..+++++.++.+.+. +..+++++++++++.+..++..+ |+++
T Consensus       230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~ivv  293 (293)
T cd05195         230 FSSVDLDQLAR-ERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIG-KVVL  293 (293)
T ss_pred             EEEEeHHHHhh-hChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCc-eecC
Confidence            77766554432 2344556778899999999998865 55799999999999999887766 8764

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=1.3e-34  Score=253.50  Aligned_cols=292  Identities=27%  Similarity=0.314  Sum_probs=228.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCC--CCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVY--PVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~--~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      .+.+.|.|+++||+||+.++++|+.|..++.+..  .....+|..+|+|++|+|+.+|+.++.+++||+|+++..     
T Consensus        16 ~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~   95 (341)
T cd05281          16 VEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGK   95 (341)
T ss_pred             EeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCCCCCEEEECCccCCCC
Confidence            4678888999999999999999999988765431  111235678999999999999999999999999998521     


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                           ..|+|++|++++.+.++++|++++++.+ +++..+.++++++.  ...+++++|||.|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~  172 (341)
T cd05281          96 CYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGC  172 (341)
T ss_pred             ChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECC
Confidence                                 2589999999999999999999998555 55667888988875  45679999999876


Q ss_pred             CcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCc-cHH
Q 021311          134 TSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN-SAS  211 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~-~~~  211 (314)
                       |.+|++++++|+..|+ +++++.    +++++.+.++++|++++++++......+++++++.+ +|++|||+|+. ...
T Consensus       173 -g~vg~~~~~la~~~G~~~v~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-vd~vld~~g~~~~~~  246 (341)
T cd05281         173 -GPIGLMAIAVAKAAGASLVIASD----PNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTG-VDVVLEMSGNPKAIE  246 (341)
T ss_pred             -CHHHHHHHHHHHHcCCcEEEEEC----CCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCC-CCEEEECCCCHHHHH
Confidence             9999999999999999 466553    377888888999999998876543226777777665 99999999875 458


Q ss_pred             HHHHhcccCCEEEEEcCCCCCCccccc-ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc---ccee
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKPITVST-SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY---DMEL  287 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~~~~  287 (314)
                      .++++|+++|+++.+|.... ...+.. .....+++++.+.....         ..+.+..+++++.++.+.+   .++.
T Consensus       247 ~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~l~~~~~~~~~  316 (341)
T cd05281         247 QGLKALTPGGRVSILGLPPG-PVDIDLNNLVIFKGLTVQGITGRK---------MFETWYQVSALLKSGKVDLSPVITHK  316 (341)
T ss_pred             HHHHHhccCCEEEEEccCCC-CcccccchhhhccceEEEEEecCC---------cchhHHHHHHHHHcCCCChhHheEEE
Confidence            88999999999999985433 222222 22455777777654211         1234677889999999864   2457


Q ss_pred             eccccHHHHHHHHhccCCCCCceEeeC
Q 021311          288 VPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       288 ~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++++|+.+.+++ .+ |+|+++
T Consensus       317 ~~~~~~~~a~~~~~~~~-~g-k~vv~~  341 (341)
T cd05281         317 LPLEDFEEAFELMRSGK-CG-KVVLYP  341 (341)
T ss_pred             ecHHHHHHHHHHHhcCC-Cc-eEEecC
Confidence            99999999999999988 77 999864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.6e-34  Score=250.44  Aligned_cols=302  Identities=25%  Similarity=0.324  Sum_probs=243.9

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      +.+.|+|++++|+|++.++++|+.|.....+.++..+..|..+|||++|+|+.+|+++.++++||+|+++.. .|+|++|
T Consensus        18 ~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~-~~~~~~~   96 (337)
T cd08275          18 KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLTR-FGGYAEV   96 (337)
T ss_pred             ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEecC-CCeeeeE
Confidence            456677899999999999999999999888876544456788999999999999999999999999999863 4899999


Q ss_pred             EeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc
Q 021311           83 VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS  162 (314)
Q Consensus        83 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~  162 (314)
                      +.++.+.++++|+++++.+++.++..+.+||+++.+.++++++++|+|+|++|.+|++++++|+..  .++.++..  ..
T Consensus        97 ~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~--~~~~~~~~--~~  172 (337)
T cd08275          97 VNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV--PNVTVVGT--AS  172 (337)
T ss_pred             EEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc--cCcEEEEe--CC
Confidence            999999999999999999999999999999999988889999999999999999999999999998  33333322  13


Q ss_pred             HHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC---c----
Q 021311          163 DEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP---I----  234 (314)
Q Consensus       163 ~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~---~----  234 (314)
                      +++.+.++.+|.+.+++.... ....++..+. . ++|+++||.|+.....++++++++|+++.+|......   .    
T Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~-~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  250 (337)
T cd08275         173 ASKHEALKENGVTHVIDYRTQDYVEEVKKISP-E-GVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFK  250 (337)
T ss_pred             HHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhC-C-CceEEEECCcHHHHHHHHHhhccCcEEEEEeecCCcCcccccccc
Confidence            556777888999888887654 3355766664 3 4999999999887788999999999999998543211   1    


Q ss_pred             ---------ccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccC
Q 021311          235 ---------TVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLH  304 (314)
Q Consensus       235 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~  304 (314)
                               .+.+...+.+++++.++....... ..+ .....+..+++++.++.+.+. ++.|++++++++++.+.+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (337)
T cd08275         251 LAKKWWNRPKVDPMKLISENKSVLGFNLGWLFE-ERE-LLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRK  328 (337)
T ss_pred             cccccccccccCHHHHhhcCceEEEeechhhhh-ChH-HHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCC
Confidence                     111234467888888887643221 112 334567889999999998865 46799999999999999888


Q ss_pred             CCCCceEeeC
Q 021311          305 GSQPKQVIKF  314 (314)
Q Consensus       305 ~~~~k~vi~~  314 (314)
                      ..+ |+++++
T Consensus       329 ~~~-kvv~~~  337 (337)
T cd08275         329 NIG-KVVLTP  337 (337)
T ss_pred             Ccc-eEEEeC
Confidence            777 999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.3e-34  Score=249.63  Aligned_cols=261  Identities=24%  Similarity=0.339  Sum_probs=216.1

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      ++++.|++.+++|+|+|.++++|+.|.....+.+.. ...|..+|+|++|+|+.+|++++.+++||+|++...       
T Consensus        17 ~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~   95 (306)
T cd08258          17 REVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRC   95 (306)
T ss_pred             eecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCCCCCEEEEccCcCCCCCC
Confidence            577889999999999999999999999888886532 245789999999999999999999999999998642       


Q ss_pred             --------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           75 --------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        75 --------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                                          ..|+|++|++++.+.++++|+++++++++ ++...++||+++...++++++++|||.| +
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g-~  173 (306)
T cd08258          96 PYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFG-P  173 (306)
T ss_pred             cchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEEC-C
Confidence                                14899999999999999999999999887 6668899999998889999999999977 5


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCC-ccHHH
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGG-NSASK  212 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~-~~~~~  212 (314)
                      |.+|++++++|+..|++++.+...  +++++.+.++.+|++++ +++... .+.+...+.+.+ +|+++||.|+ .....
T Consensus       174 g~~g~~~~~la~~~G~~v~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~-vd~vld~~g~~~~~~~  249 (306)
T cd08258         174 GPIGLLAAQVAKLQGATVVVVGTE--KDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDG-ADVVIECSGAVPALEQ  249 (306)
T ss_pred             CHHHHHHHHHHHHcCCEEEEECCC--CCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCC-CCEEEECCCChHHHHH
Confidence            999999999999999998776433  24667788888999888 776543 355777666655 9999999976 45588


Q ss_pred             HHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcC
Q 021311          213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      .+++|+++|+++.+|........++...++.+++++.|++++..          ++++++++++++|
T Consensus       250 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~~~~~~~~  306 (306)
T cd08258         250 ALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTP----------ASWETALRLLASG  306 (306)
T ss_pred             HHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCch----------HhHHHHHHHHhcC
Confidence            99999999999999976533455566667779999999987542          4577788887765

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=9.5e-34  Score=246.03  Aligned_cols=302  Identities=26%  Similarity=0.347  Sum_probs=247.8

Q ss_pred             cCCCCCCC-CCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            3 ELPPVEVK-ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         3 ~~~~p~~~-~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +.+ |.+. +++++|++.++++|+.|+....+.+...+..|..+|||++|+|+.+|+++..+++||+|+++.. .|++++
T Consensus        19 ~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~-~~~~~~   96 (323)
T cd08241          19 EVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALTG-QGGFAE   96 (323)
T ss_pred             cCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEecC-CceeEE
Confidence            344 5555 5999999999999999999888766443345678999999999999999999999999999863 479999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |+.++.+.++++|+++++.+++.+..++.+||+++.+.++++++++++|+|++|.+|++++++++..|++++.+.+    
T Consensus        97 ~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~----  172 (323)
T cd08241          97 EVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAAS----  172 (323)
T ss_pred             EEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeC----
Confidence            9999999999999999999999888899999999987789999999999999999999999999999999888874    


Q ss_pred             cHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      +.++.+.++++|.+.+++.... ..+.++..+.+.+ +|+++||.|+.....++++++++|+++.+|........+....
T Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~-~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~  251 (323)
T cd08241         173 SEEKLALARALGADHVIDYRDPDLRERVKALTGGRG-VDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGEIPQIPANL  251 (323)
T ss_pred             CHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCC-cEEEEECccHHHHHHHHHhhccCCEEEEEccCCCCcCcCCHHH
Confidence            5677888888998888877654 3456777777665 9999999998777889999999999999985432211122334


Q ss_pred             ceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .+.+++++.+.....+.. ..+....+.++.+++++.++.+.+. ++.|+++++.++++.+.+++..+ |++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~  323 (323)
T cd08241         252 LLLKNISVVGVYWGAYAR-REPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATG-KVVLT  323 (323)
T ss_pred             HhhcCcEEEEEecccccc-hhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCC-cEEeC
Confidence            456888888877654422 2344456778899999999988764 56799999999999999887776 88764

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=2e-34  Score=245.19  Aligned_cols=233  Identities=21%  Similarity=0.237  Sum_probs=190.4

Q ss_pred             cCCcceEEEEEEecCCCC------CCCCCCEEeeCCC---------------------------------CCCcccceEe
Q 021311           44 VGGYEGVGEVYSVGSAVT------RLAPGDWVIPSPP---------------------------------SSGTWQSYVV   84 (314)
Q Consensus        44 ~~G~e~~G~V~~~G~~v~------~~~~Gd~V~~~~~---------------------------------~~g~~~~~~~   84 (314)
                      ++|||++|+|+++|++|+      +|++||||...+.                                 .+|+|+||++
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            479999999999999999      8999999976421                                 1389999999


Q ss_pred             eecc-ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcH
Q 021311           85 KDQS-VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD  163 (314)
Q Consensus        85 ~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~  163 (314)
                      ++++ .++++|++++++.++.+++.+.|||+++.+ ....++++|||+|+ |++|++++|+|+.+|++.+++++   .++
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~---~~~  155 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEA-AGDLKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAAD---PSP  155 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHh-ccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEC---CCH
Confidence            9997 799999999999999999899999999876 56679999999998 99999999999999998444443   378


Q ss_pred             HHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCC-CCCcccccccc
Q 021311          164 EAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMS-KKPITVSTSAF  241 (314)
Q Consensus       164 ~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~  241 (314)
                      ++.+.++++|+++++++.+. .+.+++++.+.+ +|++|||+|.+. +..++++++++|+++.+|... ..+.++++..+
T Consensus       156 ~r~~~a~~~Ga~~~i~~~~~-~~~~~~~~~~~g-~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~  233 (280)
T TIGR03366       156 DRRELALSFGATALAEPEVL-AERQGGLQNGRG-VDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQV  233 (280)
T ss_pred             HHHHHHHHcCCcEecCchhh-HHHHHHHhCCCC-CCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHH
Confidence            88999999999999887543 345666776665 999999998765 589999999999999999654 34456777788


Q ss_pred             eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcC--Cccc---cceeeccccH
Q 021311          242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG--KLKY---DMELVPFNNF  293 (314)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g--~~~~---~~~~~~~~~~  293 (314)
                      +.+++++.|++...          .+.++++++++.++  ++.+   .++.|+++|+
T Consensus       234 ~~~~~~i~g~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       234 VRRWLTIRGVHNYE----------PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             HhCCcEEEecCCCC----------HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            88999999975421          14578888898875  4443   2578999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.6e-33  Score=244.54  Aligned_cols=294  Identities=30%  Similarity=0.344  Sum_probs=228.8

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--CC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--SS   76 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~~   76 (314)
                      +++.+.|++.+++|+|++.++++|+.|.....+.++.  ....|..+|||++|+|+++|+++.++++||+|+++..  ..
T Consensus        16 ~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~   95 (319)
T cd08267          16 EVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGG   95 (319)
T ss_pred             cccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCCCC
Confidence            3577888999999999999999999999988776531  1134678999999999999999999999999998752  24


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      |+|++|+.++.+.++++|++++++.++.++.++.+||+++.+...++++++++|+|++|.+|++++++|+..|++++.++
T Consensus        96 g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~  175 (319)
T cd08267          96 GALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVC  175 (319)
T ss_pred             ceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence            89999999999999999999999999999999999999998877899999999999999999999999999999988887


Q ss_pred             cCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcCCCCCCc
Q 021311          157 RDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGGMSKKPI  234 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~~~~~~~  234 (314)
                           +.++.+.++++|.+++++.......  +..+.+.+ +|+++||+++...  ......++++|+++.+|.......
T Consensus       176 -----~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~-~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~  247 (319)
T cd08267         176 -----STRNAELVRSLGADEVIDYTTEDFV--ALTAGGEK-YDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLL  247 (319)
T ss_pred             -----CHHHHHHHHHcCCCEeecCCCCCcc--hhccCCCC-CcEEEECCCchHHHHHHhhhccCCCCEEEEecccccccc
Confidence                 2367788888999888876654322  33444544 9999999996432  333344999999999985433221


Q ss_pred             ccc---cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCce
Q 021311          235 TVS---TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQ  310 (314)
Q Consensus       235 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~  310 (314)
                      ...   ..........+.....    .   +.  .+.+..+++++.++.+.+. ++.|++++++++++.+.+++..+ |+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~----~---~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~-~v  317 (319)
T cd08267         248 LVLLLLPLTLGGGGRRLKFFLA----K---PN--AEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARG-KV  317 (319)
T ss_pred             ccccccchhhccccceEEEEEe----c---CC--HHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCC-cE
Confidence            111   0111111122222111    0   11  4678889999999988764 56899999999999999887766 77


Q ss_pred             Ee
Q 021311          311 VI  312 (314)
Q Consensus       311 vi  312 (314)
                      ++
T Consensus       318 vv  319 (319)
T cd08267         318 VI  319 (319)
T ss_pred             eC
Confidence            64

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=100.00  E-value=3e-33  Score=238.91  Aligned_cols=282  Identities=27%  Similarity=0.339  Sum_probs=234.0

Q ss_pred             EEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccceEeeeccceEEcCC
Q 021311           16 VKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSK   95 (314)
Q Consensus        16 v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~   95 (314)
                      ||+.++++|+.|+....+.++    .|.++|||++|+|+++|++++.+++||+|+++.  .|+|++|+.++.+.++++|+
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~--~g~~~~~~~~~~~~~~~~p~   75 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA--PGSFATYVRTDARLVVPIPD   75 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc--CCceeeEEEccHHHeEECCC
Confidence            899999999999998887653    257899999999999999999999999999986  58999999999999999999


Q ss_pred             CCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC-
Q 021311           96 DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA-  174 (314)
Q Consensus        96 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-  174 (314)
                      ++++.+++.+++.+.++|+++.+...+.+|++|+|+|++|.+|++++++++..|++++.+++    ++++.+.++++|. 
T Consensus        76 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~~g~~  151 (288)
T smart00829       76 GLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAG----SPEKRDFLRELGIP  151 (288)
T ss_pred             CCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHcCCC
Confidence            99999999999999999999977789999999999998899999999999999999888874    6778888889998 


Q ss_pred             -cEEEecChh-hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC-CcccccccceecceEEEEE
Q 021311          175 -DEVFTESQL-EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGF  251 (314)
Q Consensus       175 -~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~  251 (314)
                       +.++++.+. ..+.+...+.+++ +|+++|++++.....++++++++|+++.+|..... ...+.... +.+++++.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~  229 (288)
T smart00829      152 DDHIFSSRDLSFADEILRATGGRG-VDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAV  229 (288)
T ss_pred             hhheeeCCCccHHHHHHHHhCCCC-cEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEE
Confidence             778877654 3456777777665 99999999987778899999999999999854321 12233333 4567787777


Q ss_pred             echhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          252 WLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .+..+.  ..+....+.+..+++++.++++.+. ++.|++++++++++.+..++..+ |+++
T Consensus       230 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv  288 (288)
T smart00829      230 DLDALE--EGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIG-KVVL  288 (288)
T ss_pred             EHHHhh--cChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcc-eEeC
Confidence            654432  1334455677889999999988763 56799999999999999987666 7764

Enoylreductase in Polyketide synthases.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=100.00  E-value=3.3e-33  Score=241.22  Aligned_cols=287  Identities=25%  Similarity=0.351  Sum_probs=234.6

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCC--CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--CCC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYP--VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--SSG   77 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~--~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~~g   77 (314)
                      ++.+.|++++++|+|++.++++|+.|+....+...  ....+|..+|||++|+|+.+|+++..+++||+|.++..  ..|
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~~~~~g   97 (309)
T cd05289          18 ADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGG   97 (309)
T ss_pred             cccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEccCCCCCC
Confidence            35566778999999999999999999998877642  12245889999999999999999999999999999851  137


Q ss_pred             cccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311           78 TWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus        78 ~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +|++|+.++.+.++++|+++++..++.++..+.++|+++.+...+.++++++|+|++|.+|++++++++..|++++++++
T Consensus        98 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~  177 (309)
T cd05289          98 AYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS  177 (309)
T ss_pred             cceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEec
Confidence            99999999999999999999999999999999999999988777999999999999999999999999999999988874


Q ss_pred             CCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccc
Q 021311          158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS  237 (314)
Q Consensus       158 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  237 (314)
                          ++ +.+.++++|.+.+++.......+   .+.+.+ +|+++||+++.....++++++++|+++.+|.......   
T Consensus       178 ----~~-~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~-~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~---  245 (309)
T cd05289         178 ----AA-NADFLRSLGADEVIDYTKGDFER---AAAPGG-VDAVLDTVGGETLARSLALVKPGGRLVSIAGPPPAEQ---  245 (309)
T ss_pred             ----ch-hHHHHHHcCCCEEEeCCCCchhh---ccCCCC-ceEEEECCchHHHHHHHHHHhcCcEEEEEcCCCcchh---
Confidence                34 67777889988888776543322   333444 9999999999877899999999999999985433111   


Q ss_pred             cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                        ..+.+++++....+.       +.  .+.++.+++++.++.+.+. ++.|++++++++++.+.+++..+ |+++
T Consensus       246 --~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-kvv~  309 (309)
T cd05289         246 --AAKRRGVRAGFVFVE-------PD--GEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARG-KVVL  309 (309)
T ss_pred             --hhhhccceEEEEEec-------cc--HHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCC-cEeC
Confidence              233455666655431       11  4678889999999988754 67899999999999999887766 8764

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.1e-32  Score=230.81  Aligned_cols=236  Identities=31%  Similarity=0.420  Sum_probs=199.4

Q ss_pred             cEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------------------
Q 021311           13 DVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------------------   74 (314)
Q Consensus        13 eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------------------   74 (314)
                      ||+|+|.++++|+.|+....+..+....+|..+|||++|+|+++|+.++.|++||+|++...                  
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   80 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGI   80 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCE
Confidence            68999999999999999998876533356889999999999999999999999999999762                  


Q ss_pred             ----CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC
Q 021311           75 ----SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI  150 (314)
Q Consensus        75 ----~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~  150 (314)
                          ..|+|++|+.++.+.++++|+++++++++.++.++.+||+++.....++++++|||+|+++ +|++++++++..|.
T Consensus        81 ~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~  159 (271)
T cd05188          81 LGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGA  159 (271)
T ss_pred             eccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCC
Confidence                1589999999999999999999999999999999999999999877779999999999966 99999999999999


Q ss_pred             cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEEcC
Q 021311          151 HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       151 ~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~  228 (314)
                      +++++..    ++++.+.++.+|++.+++..+.. .+.+. ...+.+ +|+++||++. .....++++++++|+++.++.
T Consensus       160 ~v~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~-~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         160 RVIVTDR----SDEKLELAKELGADHVIDYKEEDLEEELR-LTGGGG-ADVVIDAVGGPETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             eEEEEcC----CHHHHHHHHHhCCceeccCCcCCHHHHHH-HhcCCC-CCEEEECCCCHHHHHHHHHhcccCCEEEEEcc
Confidence            9888874    67788888889988888876543 34455 444444 9999999998 667889999999999999996


Q ss_pred             CCCCCcccccccceecceEEEEEechh
Q 021311          229 MSKKPITVSTSAFIFKDLSLKGFWLQK  255 (314)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (314)
                      .............+.+++++.+++...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (271)
T cd05188         234 TSGGPPLDDLRRLLFKELTIIGSTGGT  260 (271)
T ss_pred             CCCCCCcccHHHHHhcceEEEEeecCC
Confidence            554333223445677899999987644

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=1.1e-30  Score=210.41  Aligned_cols=290  Identities=24%  Similarity=0.349  Sum_probs=230.9

Q ss_pred             CCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCc----ceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            7 VEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGY----EGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         7 p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~----e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      .++++++|+||..|.+..|.-...+....+...-.|+.||-    ..+|+|++  |...++++||.|.++.    +|.+|
T Consensus        33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~----gWeey  106 (343)
T KOG1196|consen   33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV----GWEEY  106 (343)
T ss_pred             CCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec----cceEE
Confidence            45689999999999999887765554433321112444442    66899998  6778899999999996    89999


Q ss_pred             Eeeeccc--eEEcCC--CCCHHHh-hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311           83 VVKDQSV--WHKVSK--DSPMEYA-ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus        83 ~~~~~~~--~~~~p~--~~~~~~a-a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .+++++.  .+++|.  ++++... .++..+.+|||-.+.+++.++.|++++|.||+|++|+.+.|+|+.+|+.|+..+ 
T Consensus       107 sii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsa-  185 (343)
T KOG1196|consen  107 SVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSA-  185 (343)
T ss_pred             EEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEec-
Confidence            9998754  444444  3333322 345567999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCcHHHHHHHH-hCCCcEEEecChh-hHH-HHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCc
Q 021311          158 DRAGSDEAKEKLK-GLGADEVFTESQL-EVK-NVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPI  234 (314)
Q Consensus       158 ~~~~~~~~~~~~~-~lg~~~~~~~~~~-~~~-~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~  234 (314)
                         ++.++...++ ++|.+.++||.++ +.+ .+++....  ++|+.||++|+...+..+..|+..||++.+|..+..+.
T Consensus       186 ---GS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~--GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~  260 (343)
T KOG1196|consen  186 ---GSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPE--GIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNL  260 (343)
T ss_pred             ---CChhhhhhhHhccCCccceeccCccCHHHHHHHhCCC--cceEEEeccCcHHHHHHHHhhhhccceEeeeeehhccc
Confidence               4889898886 5799999999876 554 45554433  49999999999999999999999999999998775443


Q ss_pred             ccc-----cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccccee-eccccHHHHHHHHhccCCCCC
Q 021311          235 TVS-----TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMEL-VPFNNFQTALSKALGLHGSQP  308 (314)
Q Consensus       235 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~  308 (314)
                      +.+     ...+..+.+++.|+....+     .+++.+.++.+..++++|+++..-+. -.|++.++||.-|..++..| 
T Consensus       261 ~~~~~~~~l~~ii~Kr~~iqgflv~d~-----~d~~~k~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvG-  334 (343)
T KOG1196|consen  261 ENPEGLHNLSTIIYKRIRIQGFLVSDY-----LDKYPKFLDFLLPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVG-  334 (343)
T ss_pred             cCCccccchhhheeeeEEeeeEEeech-----hhhhHHHHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHhccCccc-
Confidence            322     2456778899999766544     45667889999999999999987654 46999999999999999999 


Q ss_pred             ceEeeC
Q 021311          309 KQVIKF  314 (314)
Q Consensus       309 k~vi~~  314 (314)
                      |.++.+
T Consensus       335 Kqiv~v  340 (343)
T KOG1196|consen  335 KQLVKV  340 (343)
T ss_pred             ceEEEe
Confidence            988763

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.97  E-value=2e-31  Score=245.33  Aligned_cols=287  Identities=19%  Similarity=0.166  Sum_probs=245.1

Q ss_pred             CCCcEEEEEEeecCChhhhhhhccCCCCCC------CCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccceE
Q 021311           10 KENDVCVKMLAAPINPSDINRIEGVYPVRP------KVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYV   83 (314)
Q Consensus        10 ~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~------~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~~   83 (314)
                      .++.=+.-|.|+.||..|+-...|.++..-      ..-+.+|-||+|+          .+-|.||+++.+ .-++++.+
T Consensus      1443 ~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRvM~mvp-AksLATt~ 1511 (2376)
T KOG1202|consen 1443 CPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRVMGMVP-AKSLATTV 1511 (2376)
T ss_pred             CCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEEEEeee-hhhhhhhh
Confidence            556668889999999999999888765321      1236789999997          566999999876 46899999


Q ss_pred             eeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcH
Q 021311           84 VKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD  163 (314)
Q Consensus        84 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~  163 (314)
                      .++.+.++.+|++..+++|++.|+.+.||||+|....+.++|++|||++++|++|++++.+|.+.|++||+++.    +.
T Consensus      1512 l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVG----Sa 1587 (2376)
T KOG1202|consen 1512 LASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVG----SA 1587 (2376)
T ss_pred             hcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecC----cH
Confidence            99999999999999999999999999999999999899999999999999999999999999999999999994    77


Q ss_pred             HHHHHHH----hCCCcEEEecChhhHHH-HHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccc
Q 021311          164 EAKEKLK----GLGADEVFTESQLEVKN-VKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVST  238 (314)
Q Consensus       164 ~~~~~~~----~lg~~~~~~~~~~~~~~-i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  238 (314)
                      +++++++    ++...++-|+++.++++ +++.|.|+| +|+|+|+...+..+..++||.-+||+..+|-..-...+...
T Consensus      1588 EKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrG-VdlVLNSLaeEkLQASiRCLa~~GRFLEIGKfDLSqNspLG 1666 (2376)
T KOG1202|consen 1588 EKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRG-VDLVLNSLAEEKLQASIRCLALHGRFLEIGKFDLSQNSPLG 1666 (2376)
T ss_pred             HHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCC-eeeehhhhhHHHHHHHHHHHHhcCeeeeecceecccCCcch
Confidence            8877774    46777788888876655 888899998 99999999999999999999999999999954433333445


Q ss_pred             ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc-cceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          239 SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY-DMELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..++.+|.++.|..+.+++. .+.+++++...-+.+-++.|..+| ++++|+-.++++||+.|.+++..| |+|+++
T Consensus      1667 MavfLkNvsfHGiLLDsvme-ge~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIG-KVvikv 1741 (2376)
T KOG1202|consen 1667 MAVFLKNVSFHGILLDSVME-GEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIG-KVVIKV 1741 (2376)
T ss_pred             hhhhhcccceeeeehhhhhc-CcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccc-eEEEEE
Confidence            67888999999999988876 456666666777777777788887 478999999999999999999999 999874

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.97  E-value=3.1e-29  Score=213.37  Aligned_cols=258  Identities=23%  Similarity=0.265  Sum_probs=198.6

Q ss_pred             cCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHH
Q 021311           33 GVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA  112 (314)
Q Consensus        33 ~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  112 (314)
                      |.+|.  .+|.++|||++|+|+++|++++++++||+|+++.    .|++|+.++.+.++++|+++++++++.+ .++++|
T Consensus        14 ~~~~~--~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~----~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta   86 (277)
T cd08255          14 GTEKL--PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG----PHAERVVVPANLLVPLPDGLPPERAALT-ALAATA   86 (277)
T ss_pred             cCccC--cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHH
Confidence            44444  4789999999999999999999999999999873    6999999999999999999999999888 789999


Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCC-CcEEEecChhhHHHHHH
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLG-ADEVFTESQLEVKNVKG  190 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~i~~  190 (314)
                      |+++. .++++++++++|+|+ |.+|++++++|+.+|++ ++++.+    ++++.+.++++| ++.+++..+       .
T Consensus        87 ~~~~~-~~~~~~g~~vlI~g~-g~vg~~~i~~a~~~g~~~vi~~~~----~~~~~~~~~~~g~~~~~~~~~~-------~  153 (277)
T cd08255          87 LNGVR-DAEPRLGERVAVVGL-GLVGLLAAQLAKAAGAREVVGVDP----DAARRELAEALGPADPVAADTA-------D  153 (277)
T ss_pred             HHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEECC----CHHHHHHHHHcCCCccccccch-------h
Confidence            99986 589999999999986 99999999999999999 776663    677788888898 555544432       1


Q ss_pred             HhcCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccC-H-HHHHH
Q 021311          191 LLANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEK-A-TECRN  267 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  267 (314)
                      .+.+.+ +|++|||++.. .....+++++++|+++.+|..... .......+..+.+++.+..+........ + ....+
T Consensus       154 ~~~~~~-~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (277)
T cd08255         154 EIGGRG-ADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEAR  231 (277)
T ss_pred             hhcCCC-CCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccc
Confidence            123344 99999998864 458899999999999999865433 1111123334556777765433211110 0 12335


Q ss_pred             HHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          268 MIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .++++++++.++.+.+. ++.|+++++.++|+.+.+++..-.|+++
T Consensus       232 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         232 NLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             cHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            68889999999998764 5679999999999999987444347764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.79  E-value=3.2e-19  Score=129.45  Aligned_cols=83  Identities=41%  Similarity=0.516  Sum_probs=71.5

Q ss_pred             CCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC---------------
Q 021311           11 ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS---------------   75 (314)
Q Consensus        11 ~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~---------------   75 (314)
                      |+||+|||.++|||++|++.+.+.......+|.++|||++|+|+++|++++.|++||+|++....               
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            78999999999999999999999544445789999999999999999999999999999985421               


Q ss_pred             -----------CCcccceEeeeccceEEc
Q 021311           76 -----------SGTWQSYVVKDQSVWHKV   93 (314)
Q Consensus        76 -----------~g~~~~~~~~~~~~~~~~   93 (314)
                                 +|+|+||+++++++++++
T Consensus        81 c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             CCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                       899999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.75  E-value=2.2e-17  Score=124.09  Aligned_cols=115  Identities=30%  Similarity=0.483  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecCCC-ccHHHH
Q 021311          136 IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCVGG-NSASKV  213 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~  213 (314)
                      ++|++++|+|+..|++++++..    ++++++.++++|+++++++++. ..+++++.+++.+ +|++|||+|. +.++.+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~----~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~-~d~vid~~g~~~~~~~~   75 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDR----SEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRG-VDVVIDCVGSGDTLQEA   75 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSS-EEEEEESSSSHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEEC----CHHHHHHHHhhccccccccccccccccccccccccc-ceEEEEecCcHHHHHHH
Confidence            5899999999999988888883    7889999999999999999876 5588999998866 9999999994 566999


Q ss_pred             HHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechh
Q 021311          214 LKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK  255 (314)
Q Consensus       214 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (314)
                      +++++++|+++.+|.......+++...++.+++++.|++..+
T Consensus        76 ~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~  117 (130)
T PF00107_consen   76 IKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS  117 (130)
T ss_dssp             HHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG
T ss_pred             HHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC
Confidence            999999999999997776778888999999999999998754

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.51  E-value=1.2e-14  Score=108.64  Aligned_cols=122  Identities=27%  Similarity=0.334  Sum_probs=78.1

Q ss_pred             CCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC--CccH-HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEE
Q 021311          172 LGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG--GNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSL  248 (314)
Q Consensus       172 lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  248 (314)
                      ||+++++||+..++      +... ++|+||||+|  ++.+ ..++++| ++|++|.++.      .........+...+
T Consensus         1 LGAd~vidy~~~~~------~~~~-~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~------~~~~~~~~~~~~~~   66 (127)
T PF13602_consen    1 LGADEVIDYRDTDF------AGPG-GVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG------DLPSFARRLKGRSI   66 (127)
T ss_dssp             CT-SEEEETTCSHH------HTTS--EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S------HHHHHHHHHHCHHC
T ss_pred             CCcCEEecCCCccc------cCCC-CceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC------cccchhhhhcccce
Confidence            69999999996554      3233 4999999999  4444 5666778 9999999983      11111111122222


Q ss_pred             EEEechhhccccCH-HHHHHHHHHHHHHHHcCCccccce-eeccccHHHHHHHHhccCCCCCceEe
Q 021311          249 KGFWLQKWLSSEKA-TECRNMIDYLLCLAREGKLKYDME-LVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       249 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      ....+...    .+ ...++.++.+.+++.+|++++.+. +||++++++|++.+++++..| |+|+
T Consensus        67 ~~~~~~~~----~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~G-KvVl  127 (127)
T PF13602_consen   67 RYSFLFSV----DPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARG-KVVL  127 (127)
T ss_dssp             EEECCC-H------HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SS-EEEE
T ss_pred             EEEEEEec----CCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCC-eEeC
Confidence            22222110    01 235567999999999999999976 799999999999999999998 9986

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.40  E-value=6.6e-12  Score=110.37  Aligned_cols=175  Identities=13%  Similarity=0.084  Sum_probs=128.8

Q ss_pred             HHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHH
Q 021311          110 LTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV  188 (314)
Q Consensus       110 ~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i  188 (314)
                      -..|.++.+..++ -+|++|+|.|+ |.+|+.+++.++.+|++++++- .   ++.+.+.++.+|++.+. .     ++ 
T Consensus       186 ~s~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d-~---d~~R~~~A~~~G~~~~~-~-----~e-  253 (413)
T cd00401         186 ESLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTE-V---DPICALQAAMEGYEVMT-M-----EE-  253 (413)
T ss_pred             hhhHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-C---ChhhHHHHHhcCCEEcc-H-----HH-
Confidence            3456666665554 68999999999 9999999999999999876644 2   67778888889985431 1     11 


Q ss_pred             HHHhcCCCCCcEEEecCCCccH-HH-HHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHH
Q 021311          189 KGLLANLPEPALGFNCVGGNSA-SK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR  266 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~~-~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (314)
                        ...   ++|++|+|+|.... .. .+++++++|+++.+|..   +.+++...+..+++++.+......         .
T Consensus       254 --~v~---~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~---~~eId~~~L~~~el~i~g~~~~~~---------~  316 (413)
T cd00401         254 --AVK---EGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF---DVEIDVKGLKENAVEVVNIKPQVD---------R  316 (413)
T ss_pred             --HHc---CCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC---CCccCHHHHHhhccEEEEccCCcc---------e
Confidence              111   38999999998664 44 48999999999999933   456777777788899888754311         0


Q ss_pred             HHHH--HHHHHHHcCCc-ccc---cee-----eccc-cHHHHHHHHhccCCCCCceEee
Q 021311          267 NMID--YLLCLAREGKL-KYD---MEL-----VPFN-NFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       267 ~~~~--~~~~~l~~g~~-~~~---~~~-----~~~~-~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ..++  ..+.++.+|++ .+.   .|.     ++|+ ++.++++.+.+.+....|+++.
T Consensus       317 ~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~  375 (413)
T cd00401         317 YELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFL  375 (413)
T ss_pred             EEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEEC
Confidence            1233  68899999988 432   466     8999 9999999999876543477654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.39  E-value=2.8e-11  Score=109.05  Aligned_cols=230  Identities=14%  Similarity=0.129  Sum_probs=136.5

Q ss_pred             CCcEEEEEEeec-CChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCC----CCCCCCCCEEeeCCCCCCccc-----
Q 021311           11 ENDVCVKMLAAP-INPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSA----VTRLAPGDWVIPSPPSSGTWQ-----   80 (314)
Q Consensus        11 ~~eV~v~v~~~~-i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~----v~~~~~Gd~V~~~~~~~g~~~-----   80 (314)
                      ..+|+|+--|+. .+.+|-......-..... .-+..   +.+|.++-.-    +..++.|+.++++.+. ....     
T Consensus        30 G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~v~~---~diilkV~~P~~~e~~~l~~g~~li~~l~p-~~~~~l~~~  104 (509)
T PRK09424         30 GFEVVVESGAGQLASFDDAAYREAGAEIVDG-AAVWQ---SDIILKVNAPSDDEIALLREGATLVSFIWP-AQNPELLEK  104 (509)
T ss_pred             CCEEEEeCCCCcCCCCCHHHHHHCCCEEecC-ccccc---CCEEEEeCCCCHHHHHhcCCCCEEEEEeCc-ccCHHHHHH
Confidence            356777776543 345665544321111001 11222   4566665433    3469999999988642 1111     


Q ss_pred             ----ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHH----hh----------cCCCCCEEEEcCCCcHHHHHHH
Q 021311           81 ----SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED----FT----------TLNSGDSIVQNGATSIVGQCII  142 (314)
Q Consensus        81 ----~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~----~~----------~~~~~~~vlI~g~~g~~G~~a~  142 (314)
                          ....+.-+.+.++.+.-++..  ....+-...|.++..    ..          +..++++|+|+|+ |.+|++++
T Consensus       105 l~~~~it~ia~e~vpr~sraq~~d~--lssma~IAGy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGa-G~iGL~Ai  181 (509)
T PRK09424        105 LAARGVTVLAMDAVPRISRAQSLDA--LSSMANIAGYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGA-GVAGLAAI  181 (509)
T ss_pred             HHHcCCEEEEeecccccccCCCccc--ccchhhhhHHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECC-cHHHHHHH
Confidence                112222233333333321111  111112222333322    22          2358999999999 99999999


Q ss_pred             HHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh--------------hHHHHHHH-hcCCCCCcEEEecCC
Q 021311          143 QIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL--------------EVKNVKGL-LANLPEPALGFNCVG  206 (314)
Q Consensus       143 ~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~--------------~~~~i~~~-~~~~g~~d~v~d~~g  206 (314)
                      +.|+.+|++++++ +.   ++++++.++++|++++ ++..+.              ..+..++. ....+++|++|+|++
T Consensus       182 ~~Ak~lGA~V~a~-D~---~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag  257 (509)
T PRK09424        182 GAAGSLGAIVRAF-DT---RPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTAL  257 (509)
T ss_pred             HHHHHCCCEEEEE-eC---CHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCC
Confidence            9999999965544 43   8899999999999955 554321              11222232 222124999999999


Q ss_pred             Ccc-------HHHHHHhcccCCEEEEEcCCCCCC--ccccccccee-cceEEEEEe
Q 021311          207 GNS-------ASKVLKFLSQGGTMVTYGGMSKKP--ITVSTSAFIF-KDLSLKGFW  252 (314)
Q Consensus       207 ~~~-------~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~-~~~~~~~~~  252 (314)
                      .+.       .+..++.|+++|+++.++...+..  .+.+...++. +++++.|.+
T Consensus       258 ~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~  313 (509)
T PRK09424        258 IPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYT  313 (509)
T ss_pred             CCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeC
Confidence            632       389999999999999999754443  4555556665 899999975

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.66  E-value=2e-06  Score=77.83  Aligned_cols=125  Identities=14%  Similarity=0.187  Sum_probs=87.7

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecCh--------------hhHHH
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQ--------------LEVKN  187 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~--------------~~~~~  187 (314)
                      .++.+++|.|+ |.+|+++++.++.+|+.++++..    +.++++.++++|++.+ ++..+              +..+.
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~----~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~  236 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDT----RPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAA  236 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHH
Confidence            35799999999 99999999999999999776653    6778899999998863 33211              11222


Q ss_pred             HHHHhcC-CCCCcEEEecC---CC--c--cHHHHHHhcccCCEEEEEcCCCCCCcccc--ccccee-cceEEEEEe
Q 021311          188 VKGLLAN-LPEPALGFNCV---GG--N--SASKVLKFLSQGGTMVTYGGMSKKPITVS--TSAFIF-KDLSLKGFW  252 (314)
Q Consensus       188 i~~~~~~-~g~~d~v~d~~---g~--~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~~~~~-~~~~~~~~~  252 (314)
                      .++++.+ ..++|++|+|+   |.  +  .....++.|++|+.+|+++...+..+...  ...+.. .++++.+..
T Consensus       237 ~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~  312 (511)
T TIGR00561       237 EMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYT  312 (511)
T ss_pred             HHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeC
Confidence            3333332 12499999999   54  3  23788999999999999997766654332  222222 358888864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.37  E-value=2e-06  Score=72.91  Aligned_cols=165  Identities=13%  Similarity=0.054  Sum_probs=91.3

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHh----CCCcEEEecChhhHHHHHHHhcC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKG----LGADEVFTESQLEVKNVKGLLAN  194 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~i~~~~~~  194 (314)
                      +.++++++||.+|+ |. |..+.++++..|.. .++.++.   +++..+.+++    .+...+. ...   ..+..+...
T Consensus        73 ~~~~~g~~VLDiG~-G~-G~~~~~~a~~~g~~~~v~gvD~---s~~~l~~A~~~~~~~g~~~v~-~~~---~d~~~l~~~  143 (272)
T PRK11873         73 AELKPGETVLDLGS-GG-GFDCFLAARRVGPTGKVIGVDM---TPEMLAKARANARKAGYTNVE-FRL---GEIEALPVA  143 (272)
T ss_pred             ccCCCCCEEEEeCC-CC-CHHHHHHHHHhCCCCEEEEECC---CHHHHHHHHHHHHHcCCCCEE-EEE---cchhhCCCC
Confidence            67899999999998 55 88888888887764 3444443   6666666654    3332221 111   112222211


Q ss_pred             CCCCcEEEecCC-----C--ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          195 LPEPALGFNCVG-----G--NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       195 ~g~~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      .+.+|+|+.+..     .  ..+..+.+.|+|+|+++..+.....+..    ..+.+...+.+......          .
T Consensus       144 ~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------~  209 (272)
T PRK11873        144 DNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP----EEIRNDAELYAGCVAGA----------L  209 (272)
T ss_pred             CCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC----HHHHHhHHHHhccccCC----------C
Confidence            224999986542     1  2358899999999999987644332211    11112221111111100          0


Q ss_pred             HHHHHHHHHHcCCcc-cc---ceeeccccHHHHHHHH--hccCCCC
Q 021311          268 MIDYLLCLAREGKLK-YD---MELVPFNNFQTALSKA--LGLHGSQ  307 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~-~~---~~~~~~~~~~~a~~~~--~~~~~~~  307 (314)
                      ..+++.+++++..+. ..   ...++++++.++++.+  ..++..+
T Consensus       210 ~~~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~~~~  255 (272)
T PRK11873        210 QEEEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGRQLD  255 (272)
T ss_pred             CHHHHHHHHHHCCCCceEEEeccceecccHHHHHHHhccccccccC
Confidence            123455556653333 22   2358899999999999  5544333

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.27  E-value=4e-05  Score=65.52  Aligned_cols=110  Identities=9%  Similarity=0.092  Sum_probs=79.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+++++|+|. |.+|+.+++.++.+|++++++.+    +.++.+.++++|...+ ..     +.+.+...   ++|+||+
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r----~~~~~~~~~~~G~~~~-~~-----~~l~~~l~---~aDiVI~  216 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGAR----KSAHLARITEMGLSPF-HL-----SELAEEVG---KIDIIFN  216 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCeee-cH-----HHHHHHhC---CCCEEEE
Confidence            6899999999 99999999999999998777764    5666777788886533 11     22333333   3999999


Q ss_pred             cCCCccH-HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEE
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG  250 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  250 (314)
                      |++.... ...++.+++++.++.++..++. ..+  ...-.++++..+
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~pgg-td~--~~a~~~Gv~~~~  261 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKPGG-TDF--EYAEKRGIKALL  261 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCCCC-cCe--eehhhCCeEEEE
Confidence            9876544 6777889999999999866554 222  233345666664

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=98.18  E-value=0.001  Score=56.50  Aligned_cols=242  Identities=12%  Similarity=0.065  Sum_probs=126.8

Q ss_pred             ccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC--------------------------CCcccceEeeeccceEEcCCC
Q 021311           43 AVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS--------------------------SGTWQSYVVKDQSVWHKVSKD   96 (314)
Q Consensus        43 ~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~--------------------------~g~~~~~~~~~~~~~~~~p~~   96 (314)
                      .+|--.+ ++|++  |.++++.+|.||.++.+.                          .-.|.+|.++..+.... | .
T Consensus        32 ~vPvWGf-A~Vve--S~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~-~-~  106 (314)
T PF11017_consen   32 IVPVWGF-ATVVE--SRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD-P-E  106 (314)
T ss_pred             ccccceE-EEEEe--eCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC-c-c
Confidence            4444444 66777  899999999999998742                          11222222222222110 0 1


Q ss_pred             CCHHHhhcccccHHHHHHHHHHhh--cCCCCCEEEEcCCCcHHHHHHHHHHH--HcCCcEEEEecCCCCcHHHHHHHHhC
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFT--TLNSGDSIVQNGATSIVGQCIIQIAR--HRGIHSINIIRDRAGSDEAKEKLKGL  172 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~--~~~~~~~vlI~g~~g~~G~~a~~la~--~~g~~vi~~~~~~~~~~~~~~~~~~l  172 (314)
                      .....+..-| -+.|.|..-..+.  +.-..+.|+|..|++-.++.++..++  .-+.+++.++     +..+++..+++
T Consensus       107 ~e~~~~LlrP-Lf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-----S~~N~~Fve~l  180 (314)
T PF11017_consen  107 REDWQMLLRP-LFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-----SARNVAFVESL  180 (314)
T ss_pred             hhHHHHHHHH-HHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-----cCcchhhhhcc
Confidence            1112222222 3344543322111  12345889999999999999988888  3345888888     77778888999


Q ss_pred             CC-cEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCC-EEEEEcCCCCCCcccccccceecceEEE
Q 021311          173 GA-DEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGG-TMVTYGGMSKKPITVSTSAFIFKDLSLK  249 (314)
Q Consensus       173 g~-~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G-~~v~~g~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      |. +.++.|++     +..+...  ..-+++|++|+... ..+-+.+...= ..+.+|..+........ .+-  +.+..
T Consensus       181 g~Yd~V~~Yd~-----i~~l~~~--~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~~~~~~~~-~l~--g~~~~  250 (314)
T PF11017_consen  181 GCYDEVLTYDD-----IDSLDAP--QPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHWDKVEAPA-DLP--GPRPE  250 (314)
T ss_pred             CCceEEeehhh-----hhhccCC--CCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCccccCccc-cCC--CCCcE
Confidence            85 46666654     3333333  47799999999765 33334443332 56666644433221110 000  00111


Q ss_pred             EEechhh----ccccCHHHHHHHHHHHHHHHHcCCccc-cc-eeeccccHHHHHHHHhccCC
Q 021311          250 GFWLQKW----LSSEKATECRNMIDYLLCLAREGKLKY-DM-ELVPFNNFQTALSKALGLHG  305 (314)
Q Consensus       250 ~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~~~-~~-~~~~~~~~~~a~~~~~~~~~  305 (314)
                      -+.....    ...-.+..+.+.+...+.-+.+..... .+ ..-..+.++++++.+.+++.
T Consensus       251 ~FFAp~~~~kr~~~~G~~~~~~r~~~aw~~f~~~~~~wl~~~~~~G~ea~~~~y~~l~~G~v  312 (314)
T PF11017_consen  251 FFFAPDQIDKRIKEWGAAEFFQRMAAAWKRFAADAQPWLKVEEVAGPEAVEAAYQDLLAGKV  312 (314)
T ss_pred             EEeChHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhcCcEEEEEecCHHHHHHHHHHHhcCCC
Confidence            1111111    000112222223333333333333222 23 35789999999999988764

>PLN02494 adenosylhomocysteinase

Probab=98.17  E-value=4.3e-05  Score=68.23  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             HHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHH
Q 021311          112 ALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKG  190 (314)
Q Consensus       112 a~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~  190 (314)
                      .|.++.+..++ -.|++++|.|. |.+|..+++.++.+|++++++..    ++.+...+...|...+ +     .+++  
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~----dp~r~~eA~~~G~~vv-~-----leEa--  306 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEI----DPICALQALMEGYQVL-T-----LEDV--  306 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC----CchhhHHHHhcCCeec-c-----HHHH--
Confidence            46677665554 67999999999 99999999999999998776552    4444445555666432 1     1121  


Q ss_pred             HhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          191 LLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                       ..   ..|+++++.|....  ...++.|++++.++.+|.
T Consensus       307 -l~---~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        307 -VS---EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             -Hh---hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence             11   38999999998653  789999999999999984

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.15  E-value=3.4e-05  Score=68.65  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhhcCC-CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHH
Q 021311          110 LTALRMLEDFTTLN-SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV  188 (314)
Q Consensus       110 ~ta~~~l~~~~~~~-~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i  188 (314)
                      ..+|+++.+..++. .|++++|.|. |.+|..+++.++.+|++++++..    ++.+...+...|.. +.+     .++ 
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~----dp~ra~~A~~~G~~-v~~-----l~e-  263 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEV----DPICALQAAMDGFR-VMT-----MEE-  263 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC----CchhhHHHHhcCCE-ecC-----HHH-
Confidence            44677777654555 8999999999 99999999999999998766553    44444444445654 221     112 


Q ss_pred             HHHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcCCC
Q 021311          189 KGLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~~~  230 (314)
                        ...   ++|++++|+|....  ...+..|++++.++..|...
T Consensus       264 --al~---~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        264 --AAE---LGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             --HHh---CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence              122   39999999998654  46889999999999998543

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.13  E-value=0.00022  Score=63.02  Aligned_cols=149  Identities=12%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++.+|+|.|+ |.+|+.+++.++.+|++++++.+    +.++.+.+. .++........+  .+.+.+...   ++|++|
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~----~~~~~~~l~~~~g~~v~~~~~~--~~~l~~~l~---~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDI----NIDRLRQLDAEFGGRIHTRYSN--AYEIEDAVK---RADLLI  235 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEEC----CHHHHHHHHHhcCceeEeccCC--HHHHHHHHc---cCCEEE
Confidence            3456999999 99999999999999998665542    555555553 455432222221  223333333   399999


Q ss_pred             ecCC---C--cc--HHHHHHhcccCCEEEEEcCCCCCCccc------ccccceecceEEEEEe-chhhccc-cCHHHHHH
Q 021311          203 NCVG---G--NS--ASKVLKFLSQGGTMVTYGGMSKKPITV------STSAFIFKDLSLKGFW-LQKWLSS-EKATECRN  267 (314)
Q Consensus       203 d~~g---~--~~--~~~~~~~l~~~G~~v~~g~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~  267 (314)
                      +|++   .  +.  ....++.|++++.++.++...+..+..      +.+.+...++.+.+.. +...+.. ....-...
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~p~~aS~~~~~~  315 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPGAVPKTSTYALTNA  315 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCcccccHHHHHHHHHHH
Confidence            9983   2  22  377888899999999999665544321      2223445677777763 3222211 11111234


Q ss_pred             HHHHHHHHHHcCCcc
Q 021311          268 MIDYLLCLAREGKLK  282 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~  282 (314)
                      .+..+..+..+|.+.
T Consensus       316 l~~~l~~~~~~g~~~  330 (370)
T TIGR00518       316 TMPYVLELANHGWRA  330 (370)
T ss_pred             HHHHHHHHHhccccc
Confidence            456666777667544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12742 oxidoreductase; Provisional

Probab=98.07  E-value=9.3e-05  Score=61.21  Aligned_cols=104  Identities=15%  Similarity=0.224  Sum_probs=65.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .++++||+|++|.+|..+++.+...|++++.+.+.   ++++.+. ...++...+ ..+-.+.+.+.+.....+++|+++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~---~~~~~~~l~~~~~~~~~-~~D~~~~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG---SKDAAERLAQETGATAV-QTDSADRDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC---CHHHHHHHHHHhCCeEE-ecCCCCHHHHHHHHHHhCCCcEEE
Confidence            46899999999999999999999999998876543   3333333 344554332 222222223333333334599999


Q ss_pred             ecCCCccH--------------------------HHHHHhcccCCEEEEEcCCCC
Q 021311          203 NCVGGNSA--------------------------SKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       203 d~~g~~~~--------------------------~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      +++|....                          ..+++.++.+|+++.+++...
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~  135 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNG  135 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            99875210                          233344567899999886543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.04  E-value=5e-05  Score=67.17  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHH
Q 021311          110 LTALRMLEDFTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV  188 (314)
Q Consensus       110 ~ta~~~l~~~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i  188 (314)
                      ..+|.++.+..+ ...|++|+|.|. |.+|+.+++.++.+|++++++..    ++.+...+...|+. +.+.     ++ 
T Consensus       179 ~s~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~----dp~r~~~A~~~G~~-v~~l-----ee-  246 (406)
T TIGR00936       179 QSTIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEV----DPIRALEAAMDGFR-VMTM-----EE-  246 (406)
T ss_pred             hhHHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeC----ChhhHHHHHhcCCE-eCCH-----HH-
Confidence            345666666444 468999999999 99999999999999999777653    34444555556653 2211     11 


Q ss_pred             HHHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcCC
Q 021311          189 KGLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~~  229 (314)
                        ...   +.|++|+++|....  ...+..|++++.++.+|..
T Consensus       247 --al~---~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       247 --AAK---IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             --HHh---cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence              111   38999999998664  4588999999999999844

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.98  E-value=0.0001  Score=61.66  Aligned_cols=108  Identities=23%  Similarity=0.299  Sum_probs=70.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcE-EE----ecCh-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADE-VF----TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~-~~----~~~~-~~~~~-i~~~~~~~  195 (314)
                      .|+.|+|+||++++|.+++.-....|++.+.+++... ..++. +.+++.+... ++    |-.+ +..++ +.+.....
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~r-rl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRAR-RLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhh-hHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            5799999999999999998888888999888886432 33333 5555555443 22    1111 22222 32333344


Q ss_pred             CCCcEEEecCCCc--------------------------cHHHHHHhcccC--CEEEEEcCCCCC
Q 021311          196 PEPALGFNCVGGN--------------------------SASKVLKFLSQG--GTMVTYGGMSKK  232 (314)
Q Consensus       196 g~~d~v~d~~g~~--------------------------~~~~~~~~l~~~--G~~v~~g~~~~~  232 (314)
                      |++|+.++++|-.                          .+..++..|++.  |+||.+++..+.
T Consensus        90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~  154 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK  154 (282)
T ss_pred             CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc
Confidence            5699999999952                          124566666544  999999976654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.97  E-value=0.00012  Score=60.59  Aligned_cols=103  Identities=19%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-H---hCCCcEEEecC--hh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-K---GLGADEVFTES--QL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~---~lg~~~~~~~~--~~-~~~~-i~~~~~~~  195 (314)
                      .+++++|+|++|.+|..+++.+...|++++.+.+    ++++.+.+ +   ..+..+.+..+  +. ..++ +.+.....
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSR----NENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999998886    34443333 2   22322333222  21 1222 22222112


Q ss_pred             CCCcEEEecCCCcc------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNS------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +++|.++.+++...                        .+..++.++++|+++.+++..
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            35899999997521                        234555667789999988653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.94  E-value=3.9e-05  Score=71.93  Aligned_cols=100  Identities=12%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC-----------------CcHHHHHHHHhCCCcEEEecCh-
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA-----------------GSDEAKEKLKGLGADEVFTESQ-  182 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~-----------------~~~~~~~~~~~lg~~~~~~~~~-  182 (314)
                      ..++|++|+|+|+ |+.|+++++.++..|++++++-..+.                 ....+.+.++++|++..++... 
T Consensus       133 ~~~~g~~V~VIGa-GpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGG-GPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            3678999999999 99999999999999998766542110                 1245567788899887776432 


Q ss_pred             hh--HHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          183 LE--VKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 ~~--~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ..  .+.+.    .  ++|+||+++|.... ...+.....+|.+..++
T Consensus       212 ~~~~~~~~~----~--~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~  253 (564)
T PRK12771        212 EDITLEQLE----G--EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVD  253 (564)
T ss_pred             CcCCHHHHH----h--hCCEEEEeeCCCCCCcCCCCCCccCCcEEHHH
Confidence            11  22221    1  39999999998543 33334444555554443

>PRK08324 short chain dehydrogenase; Validated

Probab=97.91  E-value=0.00012  Score=70.34  Aligned_cols=139  Identities=14%  Similarity=0.104  Sum_probs=83.6

Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      -++.+|..+++..++.+ +..+++++.....+          ....-+|+++||+|++|.+|.++++.+...|++++++.
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~  453 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLAD  453 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            45677777777777766 55556665421100          12234679999999999999999999999999988877


Q ss_pred             cCCCCcHHHHHHH-HhCCC--c-EE--EecChh-hHHH-HHHHhcCCCCCcEEEecCCCcc-------------------
Q 021311          157 RDRAGSDEAKEKL-KGLGA--D-EV--FTESQL-EVKN-VKGLLANLPEPALGFNCVGGNS-------------------  209 (314)
Q Consensus       157 ~~~~~~~~~~~~~-~~lg~--~-~~--~~~~~~-~~~~-i~~~~~~~g~~d~v~d~~g~~~-------------------  209 (314)
                      +    +.++.+.+ ..++.  . ..  .|-.+. .+++ +.+.....|++|++|+++|...                   
T Consensus       454 r----~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N  529 (681)
T PRK08324        454 L----DEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVN  529 (681)
T ss_pred             C----CHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHH
Confidence            5    33333332 33433  1 12  232222 2222 2222222335999999998310                   


Q ss_pred             -------HHHHHHhccc---CCEEEEEcCCC
Q 021311          210 -------ASKVLKFLSQ---GGTMVTYGGMS  230 (314)
Q Consensus       210 -------~~~~~~~l~~---~G~~v~~g~~~  230 (314)
                             ++.+++.++.   +|+++.+++..
T Consensus       530 ~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~  560 (681)
T PRK08324        530 ATGHFLVAREAVRIMKAQGLGGSIVFIASKN  560 (681)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Confidence                   1334555555   68999998643

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.88  E-value=0.00023  Score=59.49  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             CCCCCCCEEeeCCCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHH
Q 021311           61 TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQC  140 (314)
Q Consensus        61 ~~~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~  140 (314)
                      ..+.+||++++.+    +|.+|.. +...++.+++++++..+.- +. ...++..+..  .+.++++||-.|+ |. |..
T Consensus        65 ~p~~~g~~~~i~p----~~~~~~~-~~~~~i~i~p~~afgtg~h-~t-t~~~l~~l~~--~~~~~~~VLDiGc-Gs-G~l  133 (250)
T PRK00517         65 HPIRIGDRLWIVP----SWEDPPD-PDEINIELDPGMAFGTGTH-PT-TRLCLEALEK--LVLPGKTVLDVGC-GS-GIL  133 (250)
T ss_pred             CCEEEcCCEEEEC----CCcCCCC-CCeEEEEECCCCccCCCCC-HH-HHHHHHHHHh--hcCCCCEEEEeCC-cH-HHH
Confidence            4467899888775    5777754 7778899999988776541 11 1122333322  2578999999998 55 777


Q ss_pred             HHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCcc----HHH
Q 021311          141 IIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS----ASK  212 (314)
Q Consensus       141 a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~----~~~  212 (314)
                      ++.++ ..|+..+..++.   ++...+.+++    .+....+...           .+...||+|+.+.....    ...
T Consensus       134 ~i~~~-~~g~~~v~giDi---s~~~l~~A~~n~~~~~~~~~~~~~-----------~~~~~fD~Vvani~~~~~~~l~~~  198 (250)
T PRK00517        134 AIAAA-KLGAKKVLAVDI---DPQAVEAARENAELNGVELNVYLP-----------QGDLKADVIVANILANPLLELAPD  198 (250)
T ss_pred             HHHHH-HcCCCeEEEEEC---CHHHHHHHHHHHHHcCCCceEEEc-----------cCCCCcCEEEEcCcHHHHHHHHHH
Confidence            77554 467764445553   5666655543    2221001000           01113999997765543    367


Q ss_pred             HHHhcccCCEEEEEcC
Q 021311          213 VLKFLSQGGTMVTYGG  228 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~  228 (314)
                      +.+.|+++|++++.|.
T Consensus       199 ~~~~LkpgG~lilsgi  214 (250)
T PRK00517        199 LARLLKPGGRLILSGI  214 (250)
T ss_pred             HHHhcCCCcEEEEEEC
Confidence            8889999999998763

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.84  E-value=0.00016  Score=58.59  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=59.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCC----cEEEecChh-hH-HHHHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGA----DEVFTESQL-EV-KNVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~----~~~~~~~~~-~~-~~i~~~~~~~g  196 (314)
                      .++.++|+||++++|.+.++.+...|++++.+.+    +.++++.+ .+++.    ...+|-.+. .. +.+..+....+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aR----R~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g   80 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAAR----REERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFG   80 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEec----cHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence            4588999999999999999999999999999996    66666555 56773    223444443 22 33555555666


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|+.++++|-
T Consensus        81 ~iDiLvNNAGl   91 (246)
T COG4221          81 RIDILVNNAGL   91 (246)
T ss_pred             cccEEEecCCC
Confidence            79999999995

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.81  E-value=0.00063  Score=61.10  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             HHHHHHHHhhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHH
Q 021311          111 TALRMLEDFTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK  189 (314)
Q Consensus       111 ta~~~l~~~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~  189 (314)
                      ..+.++.+..+ .-.|++++|.|. |.+|..+++.++.+|++|+++..    ++.+...+...|+..+      ..+++ 
T Consensus       239 s~~d~~~R~~~~~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~----dp~~a~~A~~~G~~~~------~leel-  306 (476)
T PTZ00075        239 SLIDGIFRATDVMIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEI----DPICALQAAMEGYQVV------TLEDV-  306 (476)
T ss_pred             HHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC----CchhHHHHHhcCceec------cHHHH-
Confidence            34455544333 357999999999 99999999999999998776653    3333333333454321      12222 


Q ss_pred             HHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcCC
Q 021311          190 GLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~~  229 (314)
                        ..   ..|+++.++|....  ...+..|++++.++.+|-.
T Consensus       307 --l~---~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        307 --VE---TADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             --Hh---cCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence              22   39999999987554  5899999999999999844

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.81  E-value=0.00069  Score=57.64  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=68.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++++|+|. |.+|.++++.++.+|++++++.+    +.++.+.+.+.|... +.     .+.+.+...   +.|+|++
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R----~~~~~~~~~~~g~~~-~~-----~~~l~~~l~---~aDiVin  215 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGAR----SSADLARITEMGLIP-FP-----LNKLEEKVA---EIDIVIN  215 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHCCCee-ec-----HHHHHHHhc---cCCEEEE
Confidence            4799999999 99999999999999998776664    455555565666432 11     122333333   3999999


Q ss_pred             cCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      |+..... ...++.++++..++.++..++.
T Consensus       216 t~P~~ii~~~~l~~~k~~aliIDlas~Pg~  245 (287)
T TIGR02853       216 TIPALVLTADVLSKLPKHAVIIDLASKPGG  245 (287)
T ss_pred             CCChHHhCHHHHhcCCCCeEEEEeCcCCCC
Confidence            9976554 5677889999999999865443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.80  E-value=0.00019  Score=56.37  Aligned_cols=80  Identities=21%  Similarity=0.227  Sum_probs=58.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc---EEEecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD---EVFTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~~~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .|.+|||+|+++++|++.++-...+|-+||++.+    ++++++.++..-.+   .+.|-.+. ...+ +.++.......
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR----~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~l   79 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGR----NEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNL   79 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecC----cHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCch
Confidence            4789999999999999999999999999999985    78888888754432   23333322 1222 33334444559


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      +++++|+|-
T Consensus        80 NvliNNAGI   88 (245)
T COG3967          80 NVLINNAGI   88 (245)
T ss_pred             heeeecccc
Confidence            999999984

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.75  E-value=0.00018  Score=62.13  Aligned_cols=109  Identities=19%  Similarity=0.180  Sum_probs=76.8

Q ss_pred             cceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcC---CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHH
Q 021311           88 SVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL---NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE  164 (314)
Q Consensus        88 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~---~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~  164 (314)
                      ...+++|+.+..+.++... +.+.++.++......   -++.+|+|.|+ |.+|..+++.++..|++.+.+++.   +.+
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r---~~~  213 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANR---TYE  213 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeC---CHH
Confidence            5678889998888877665 667777776542222   47899999999 999999999999888776666653   444


Q ss_pred             H-HHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccH
Q 021311          165 A-KEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA  210 (314)
Q Consensus       165 ~-~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~  210 (314)
                      + .+.++.+|.. +++..     .+.+...   ..|+||.|++.+..
T Consensus       214 ra~~la~~~g~~-~~~~~-----~~~~~l~---~aDvVi~at~~~~~  251 (311)
T cd05213         214 RAEELAKELGGN-AVPLD-----ELLELLN---EADVVISATGAPHY  251 (311)
T ss_pred             HHHHHHHHcCCe-EEeHH-----HHHHHHh---cCCEEEECCCCCch
Confidence            4 4667778873 33321     2222222   38999999998765

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.70  E-value=0.00098  Score=56.48  Aligned_cols=78  Identities=18%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh-hHHH-HHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL-EVKN-VKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~-~~~~-i~~~~~~~g~~d~v~  202 (314)
                      +++||+|++|++|..+++.+...|++++++.+    +.++.+.+...+...+ .|..+. ..++ +.......+++|+++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi   77 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATAR----KAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLI   77 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            57999999999999999999899999998875    4455555544454332 344332 2333 222222334599999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        78 ~~ag~   82 (274)
T PRK05693         78 NNAGY   82 (274)
T ss_pred             ECCCC
Confidence            99984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00045  Score=54.89  Aligned_cols=104  Identities=22%  Similarity=0.265  Sum_probs=70.7

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCC
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      +...++++++||-+|+  +.|+.++-+++..+ +|+.+-+.+.--+..+..++.+|...+.....+-   .+.+... +.
T Consensus        66 ~~L~~~~g~~VLEIGt--GsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG---~~G~~~~-aP  138 (209)
T COG2518          66 QLLELKPGDRVLEIGT--GSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDG---SKGWPEE-AP  138 (209)
T ss_pred             HHhCCCCCCeEEEECC--CchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc---ccCCCCC-CC
Confidence            4578999999999997  45899998999887 7777774321112234445678875433222111   1111112 25


Q ss_pred             CcEEEecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          198 PALGFNCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       198 ~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      ||.|+-+++.+.. ...++.|++||++|..-.
T Consensus       139 yD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         139 YDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             cCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            9999998888777 788899999999998764

>PRK06182 short chain dehydrogenase; Validated

Probab=97.64  E-value=0.0014  Score=55.59  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=53.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh-hHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL-EVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~-~~~~-i~~~~~~~g~~d~  200 (314)
                      .+++++|+|++|.+|..+++.+...|++++++.+    +.++.+.+...+...+ .|..+. .++. +.+.....+++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r----~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAAR----RVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            3689999999999999999998889999998885    4455444444443322 233332 2222 3333333345999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +++++|.
T Consensus        78 li~~ag~   84 (273)
T PRK06182         78 LVNNAGY   84 (273)
T ss_pred             EEECCCc
Confidence            9999984

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.00077  Score=58.95  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE---EecChh-hHHHH-HHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV---FTESQL-EVKNV-KGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~-~~~~i-~~~~~~~g~~  198 (314)
                      .+++++|+|++|++|..+++.+...|++++.+.+.....++..+.+++.|....   .|..+. .++++ .+.....|++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            468999999999999999998888999998887532111111223344554432   233222 22322 2222223469


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        87 D~lInnAg~   95 (334)
T PRK07109         87 DTWVNNAMV   95 (334)
T ss_pred             CEEEECCCc
Confidence            999999985

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.61  E-value=0.00059  Score=54.00  Aligned_cols=93  Identities=20%  Similarity=0.337  Sum_probs=65.0

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      |+|+||+|.+|..+++.+...|.+++++++.    +++.+.  ..+. .++..+-.+.+.+.+...+   +|+||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~----~~~~~~--~~~~-~~~~~d~~d~~~~~~al~~---~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS----PSKAED--SPGV-EIIQGDLFDPDSVKAALKG---ADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESS----GGGHHH--CTTE-EEEESCTTCHHHHHHHHTT---SSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecC----chhccc--cccc-ccceeeehhhhhhhhhhhh---cchhhhhhhh
Confidence            7899999999999999999999999999974    333333  3333 3444444444566666654   9999999985


Q ss_pred             c-----cHHHHHHhcccCC--EEEEEcCCC
Q 021311          208 N-----SASKVLKFLSQGG--TMVTYGGMS  230 (314)
Q Consensus       208 ~-----~~~~~~~~l~~~G--~~v~~g~~~  230 (314)
                      .     .....++.++..|  +++.++...
T Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   71 PPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             TTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hcccccccccccccccccccccceeeeccc
Confidence            2     2356666665544  888877544

...

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.0014  Score=55.65  Aligned_cols=80  Identities=16%  Similarity=0.148  Sum_probs=52.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh-hHHHHHH-HhcC-CCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL-EVKNVKG-LLAN-LPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~-~~~~i~~-~~~~-~g~~d  199 (314)
                      .+++++|+|++|.+|.++++.+...|++++++.+    +.+..+.+...+...+ .|..+. ..+.+.+ .... .+.+|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r----~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id   78 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCR----KEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLD   78 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence            4679999999999999999988889999998885    4555555555454332 233332 2222222 2111 12599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        79 ~li~~Ag~   86 (277)
T PRK05993         79 ALFNNGAY   86 (277)
T ss_pred             EEEECCCc
Confidence            99999874

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.58  E-value=0.00097  Score=61.45  Aligned_cols=106  Identities=14%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-H---h-----CCC-----cEEEecChh
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-K---G-----LGA-----DEVFTESQL  183 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~---~-----lg~-----~~~~~~~~~  183 (314)
                      ...+.+.|+++||+||+|.+|..+++.+...|++++++++.    .++.+.+ .   .     .|.     ..++..+-.
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn----~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt  148 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS----AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE  148 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC----HHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence            33567789999999999999999999988899999988863    3333222 1   1     121     112222222


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCcc----------------HHHHHHhccc--CCEEEEEcCCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNS----------------ASKVLKFLSQ--GGTMVTYGGMS  230 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~----------------~~~~~~~l~~--~G~~v~~g~~~  230 (314)
                      +.+.+.+..+   ++|+||.|+|...                ...+++.+..  .++||++++..
T Consensus       149 D~esI~~aLg---giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        149 KPDQIGPALG---NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             CHHHHHHHhc---CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence            2344555443   4999999998631                1233444433  36999988654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.56  E-value=0.00058  Score=56.77  Aligned_cols=81  Identities=22%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcE-----EE--ecCh-hhHHHHHHHhc
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADE-----VF--TESQ-LEVKNVKGLLA  193 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~-----~~--~~~~-~~~~~i~~~~~  193 (314)
                      ..++++||+||++++|...+..+...|.+++.+.|    ++++++.+ +++...+     ++  |..+ ...+.+...+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR----~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVAR----REDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----cHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH
Confidence            46789999999999999999999999999999996    66666555 3333222     33  3222 23345554443


Q ss_pred             CC-CCCcEEEecCCC
Q 021311          194 NL-PEPALGFNCVGG  207 (314)
Q Consensus       194 ~~-g~~d~v~d~~g~  207 (314)
                      .. +.+|+.+||+|.
T Consensus        80 ~~~~~IdvLVNNAG~   94 (265)
T COG0300          80 ERGGPIDVLVNNAGF   94 (265)
T ss_pred             hcCCcccEEEECCCc
Confidence            33 359999999995

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.55  E-value=0.0023  Score=57.76  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             ccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC---------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           43 AVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS---------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        43 ~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                      ..-|+|+++.+.+|++++++.-.|+.=+ +.+.         .|+....+.-=-...+++|+.+..+.+. ...+.+.++
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~qI-lgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i-~~~~~Sv~~  167 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEPQI-LGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGI-GAGAVSVAS  167 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCChHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCC-CCCCcCHHH
Confidence            4569999999999999998866666322 1111         1111111000001234555555443332 233566677


Q ss_pred             HHHHHhhc---CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCcEEEecChhhHHHHH
Q 021311          114 RMLEDFTT---LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGADEVFTESQLEVKNVK  189 (314)
Q Consensus       114 ~~l~~~~~---~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~i~  189 (314)
                      .++.....   -.++++|+|+|+ |.+|.++++.++..|+..+.++..   +.++ .+.++.+|.. +++.     +.+.
T Consensus       168 ~Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r---~~~ra~~la~~~g~~-~~~~-----~~~~  237 (423)
T PRK00045        168 AAVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANR---TLERAEELAEEFGGE-AIPL-----DELP  237 (423)
T ss_pred             HHHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCc-EeeH-----HHHH
Confidence            77654222   257899999999 999999999999999865555543   4444 3466777753 3322     1222


Q ss_pred             HHhcCCCCCcEEEecCCCcc
Q 021311          190 GLLANLPEPALGFNCVGGNS  209 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~  209 (314)
                      +...   ++|+||+|++.+.
T Consensus       238 ~~l~---~aDvVI~aT~s~~  254 (423)
T PRK00045        238 EALA---EADIVISSTGAPH  254 (423)
T ss_pred             HHhc---cCCEEEECCCCCC
Confidence            2222   3999999999754

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.54  E-value=0.0013  Score=55.66  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++.+||+|+++  ++|.++++.+...|++++.+.+... ..++.+.+ +++|....+  |-.+. .++. +.+.....|
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~-~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA-LGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH-HHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            468999999975  9999999988889999988764211 11222222 345543333  22222 2222 222223334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++|+|.
T Consensus        85 ~iD~lVnnAG~   95 (271)
T PRK06505         85 KLDFVVHAIGF   95 (271)
T ss_pred             CCCEEEECCcc
Confidence            69999999984

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.54  E-value=0.0016  Score=54.78  Aligned_cols=106  Identities=11%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEEEecC--h-hhHHHH-HHHhcCCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEVFTES--Q-LEVKNV-KGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~~~~~--~-~~~~~i-~~~~~~~g  196 (314)
                      .++++||+|++  +++|.++++.+...|++++++.+... ..+..+. .++++....+..+  + ...+++ .+.....|
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDK-ARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChh-hHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            47899999997  48999999888889999887764311 1122222 2344433333222  2 222222 22222234


Q ss_pred             CCcEEEecCCCcc------------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          197 EPALGFNCVGGNS------------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       197 ~~d~v~d~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ++|++++|+|...                              ...++..|+.+|+++.+++..
T Consensus        88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~  151 (258)
T PRK07533         88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYG  151 (258)
T ss_pred             CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            6999999997410                              123455666678998887543

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0005  Score=59.94  Aligned_cols=80  Identities=26%  Similarity=0.308  Sum_probs=52.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecChh-hHHHHHH-HhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQL-EVKNVKG-LLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~~-~~~~i~~-~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+.    +++.+    .+++.|.+.. +  |-.+. .++++.+ ....
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~----~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARD----EEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999888753    33332    3344565432 2  33221 2222222 1122


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++|+|.
T Consensus        82 ~g~iD~lVnnAG~   94 (330)
T PRK06139         82 GGRIDVWVNNVGV   94 (330)
T ss_pred             cCCCCEEEECCCc
Confidence            2359999999984

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.002  Score=54.26  Aligned_cols=80  Identities=21%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhC-CCc-EEE--ecChh-hHHHHHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGL-GAD-EVF--TESQL-EVKNVKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~l-g~~-~~~--~~~~~-~~~~i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.    .++.+.+    +.. +.. ..+  |-.+. ..+.+.+....
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~   82 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRN----EENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKN   82 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHh
Confidence            47899999999999999999999999998887753    3332222    221 322 222  22222 22222222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        83 ~g~iD~lv~nag~   95 (263)
T PRK08339         83 IGEPDIFFFSTGG   95 (263)
T ss_pred             hCCCcEEEECCCC
Confidence            3469999999985

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.46  E-value=0.0023  Score=54.29  Aligned_cols=106  Identities=17%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++  +++|+++++.+...|++++.+.+.. ...++.+.+ .+++....+  |-.+. ..+. +.+.....|
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNE-ALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCH-HHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999996  6999999988888999988776431 112233332 345543322  33322 2222 222233334


Q ss_pred             CCcEEEecCCCc------------------------------cHHHHHHhcccCCEEEEEcCCC
Q 021311          197 EPALGFNCVGGN------------------------------SASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       197 ~~d~v~d~~g~~------------------------------~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ++|++++++|..                              ....+++.|+.+|+++.+++..
T Consensus        83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~  146 (274)
T PRK08415         83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG  146 (274)
T ss_pred             CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence            699999999841                              0133555677789999987543

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0018  Score=53.95  Aligned_cols=84  Identities=17%  Similarity=0.077  Sum_probs=50.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHHHHH-HhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKNVKG-LLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~i~~-~~~~~g~~  198 (314)
                      .+++++|+|++|.+|..++..+...|++++.+.+.....++..+.++..+... .+  |-.+. .++++.+ .....+++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999888899998888643111111122223334332 22  22221 2222222 22222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.|+|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999999985

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.44  E-value=0.001  Score=55.58  Aligned_cols=105  Identities=19%  Similarity=0.195  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCc-E--E--Ee
Q 021311          109 PLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGAD-E--V--FT  179 (314)
Q Consensus       109 ~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~-~--~--~~  179 (314)
                      =..++..+....+++||+++|=+|+  +-|.+++.+|+..|++|++++-    +++..+.+    ++.|.. .  +  -|
T Consensus        57 Q~~k~~~~~~kl~L~~G~~lLDiGC--GWG~l~~~aA~~y~v~V~GvTl----S~~Q~~~~~~r~~~~gl~~~v~v~l~d  130 (283)
T COG2230          57 QRAKLDLILEKLGLKPGMTLLDIGC--GWGGLAIYAAEEYGVTVVGVTL----SEEQLAYAEKRIAARGLEDNVEVRLQD  130 (283)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCC--ChhHHHHHHHHHcCCEEEEeeC----CHHHHHHHHHHHHHcCCCcccEEEecc
Confidence            3456667778899999999999998  5688999999999999999995    55554444    455654 1  1  12


Q ss_pred             cChhhHHHHHHHhcCCCCCcEEE-----ecCCCcc----HHHHHHhcccCCEEEEEcCCC
Q 021311          180 ESQLEVKNVKGLLANLPEPALGF-----NCVGGNS----ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       180 ~~~~~~~~i~~~~~~~g~~d~v~-----d~~g~~~----~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +++.        ..   .||-|+     +-+|.+.    +..+.+.|+++|++++-....
T Consensus       131 ~rd~--------~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         131 YRDF--------EE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             cccc--------cc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            2221        11   377764     3445533    367888999999998876443

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0013  Score=54.68  Aligned_cols=78  Identities=23%  Similarity=0.325  Sum_probs=51.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE-EecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV-FTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+++++|+|++|.+|..+++.+...|++++++.+    +.++.+.+ +..+...+ .|..+  .+.+.+.....+++|++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r----~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAAR----NAAALDRLAGETGCEPLRLDVGD--DAAIRAALAAAGAFDGL   81 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCeEEEecCCC--HHHHHHHHHHhCCCCEE
Confidence            5689999999999999999999999999888775    33333333 34444322 23332  22333333333359999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      |.++|.
T Consensus        82 i~~ag~   87 (245)
T PRK07060         82 VNCAGI   87 (245)
T ss_pred             EECCCC
Confidence            999985

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.40  E-value=0.0035  Score=52.58  Aligned_cols=84  Identities=14%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+......+..+.++..+.... +  |-.+. ..++ +.......+++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999998887643222222333444554432 2  22221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.|+|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999999985

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0029  Score=53.59  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=48.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE----EEecChh-hHHHH-HHHhcCCCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE----VFTESQL-EVKNV-KGLLANLPEPA  199 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~----~~~~~~~-~~~~i-~~~~~~~g~~d  199 (314)
                      ++++|+|++|++|..+++.+...|++++.+.+.....++..+.+...+...    ..|..+. ..+++ .+.....+++|
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            378999999999999999888899998877643111111122223334331    2343332 22222 22222233599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +++.++|.
T Consensus        81 ~lv~~ag~   88 (272)
T PRK07832         81 VVMNIAGI   88 (272)
T ss_pred             EEEECCCC
Confidence            99999985

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.39  E-value=0.0013  Score=49.36  Aligned_cols=94  Identities=16%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCc--EEEecChhhHHHHHHHhcCCCCCc
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGAD--EVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~--~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      -.+++++|.|+ |++|.+++..+...|++.+.++..   +.++. +.++.++..  ..++..+     +.+...   ++|
T Consensus        10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nR---t~~ra~~l~~~~~~~~~~~~~~~~-----~~~~~~---~~D   77 (135)
T PF01488_consen   10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNR---TPERAEALAEEFGGVNIEAIPLED-----LEEALQ---EAD   77 (135)
T ss_dssp             GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEES---SHHHHHHHHHHHTGCSEEEEEGGG-----HCHHHH---TES
T ss_pred             cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEEC---CHHHHHHHHHHcCccccceeeHHH-----HHHHHh---hCC
Confidence            35899999999 999999999999999986655543   44443 344555332  2333333     222222   499


Q ss_pred             EEEecCCCccH---HHHHHhccc-CCEEEEEcC
Q 021311          200 LGFNCVGGNSA---SKVLKFLSQ-GGTMVTYGG  228 (314)
Q Consensus       200 ~v~d~~g~~~~---~~~~~~l~~-~G~~v~~g~  228 (314)
                      ++++|++....   ...+....+ -+.++.++.
T Consensus        78 ivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~  110 (135)
T PF01488_consen   78 IVINATPSGMPIITEEMLKKASKKLRLVIDLAV  110 (135)
T ss_dssp             EEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-S
T ss_pred             eEEEecCCCCcccCHHHHHHHHhhhhceecccc
Confidence            99999988654   333333332 257777763

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06196 oxidoreductase; Provisional

Probab=97.39  E-value=0.0026  Score=55.19  Aligned_cols=80  Identities=23%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|++|.+++..+...|++++.+.+.    .++.+. ...+.....+  |-.+. .++. +.+.....+++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~----~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR----PDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            46899999999999999998888889999888753    333322 2223222222  22222 2222 22222223359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus       101 D~li~nAg~  109 (315)
T PRK06196        101 DILINNAGV  109 (315)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0039  Score=52.44  Aligned_cols=80  Identities=11%  Similarity=0.179  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .+++++|+|+++.+|.++++.+...|++++.+.+    +.++. +..+.++... .+  |..+. ..++ +.+.....+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   80 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDI----DADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGR   80 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999889999888875    33333 2334444321 22  22221 2222 2222222345


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        81 id~lv~~ag~   90 (261)
T PRK08265         81 VDILVNLACT   90 (261)
T ss_pred             CCEEEECCCC
Confidence            9999999884

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.36  E-value=0.0021  Score=53.74  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=57.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE--EEecCh-hhHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE--VFTESQ-LEVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--~~~~~~-~~~~~-i~~~~~~~g~~d  199 (314)
                      .|+.|||+|+++++|.+.++=...+|++++.+.-...+.++..+.++..|..+  ..|-.+ +.+.+ .++.....|.+|
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~  116 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVD  116 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCce
Confidence            68999999999999999887777779977666666556777778887776333  333332 22222 222223334599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +++|++|-
T Consensus       117 ILVNNAGI  124 (300)
T KOG1201|consen  117 ILVNNAGI  124 (300)
T ss_pred             EEEecccc
Confidence            99999994

>PRK06128 oxidoreductase; Provisional

Probab=97.35  E-value=0.0042  Score=53.45  Aligned_cols=107  Identities=15%  Similarity=0.206  Sum_probs=63.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC--cHHHHHHHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG--SDEAKEKLKGLGADEV-F--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~--~~~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++++||+|+++.+|.+++..+...|++++++......  .++..+.++..+.... +  |..+. ..++ +.+.....+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  133 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG  133 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999998888899998876543110  1112233344454322 2  22221 2222 222222233


Q ss_pred             CCcEEEecCCCcc---------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          197 EPALGFNCVGGNS---------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       197 ~~d~v~d~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ++|+++.++|...                           .+.+++.|+.+|++|.+++..
T Consensus       134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~  194 (300)
T PRK06128        134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQ  194 (300)
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcc
Confidence            5999999998410                           123445566788999887543

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0052  Score=51.12  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|..++..+...|.+++++.+......+. ...++..+... .+  |..+. ..+. +.+.....++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            368999999999999999998888899998887542111111 11223333321 22  33222 2222 2222222235


Q ss_pred             CcEEEecCCCc--------------------cHHHHHHhcccCCEEEEEcC
Q 021311          198 PALGFNCVGGN--------------------SASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       198 ~d~v~d~~g~~--------------------~~~~~~~~l~~~G~~v~~g~  228 (314)
                      +|+++.+++..                    .++.+.+.+..+|++|.+++
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            99999988642                    11344455556789998875

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0051  Score=51.79  Aligned_cols=84  Identities=17%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC-CC-c-EEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL-GA-D-EVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~-~-~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .+++++|+|+++++|.+.++.+...|++++.+.+.....++..+.+... +. . ..+  |-.+. .+++ +.+.....+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999988876321111112222221 11 1 112  32222 2222 222222334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0026  Score=52.51  Aligned_cols=80  Identities=16%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCC---CcEEE--ecChh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLG---ADEVF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg---~~~~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      .+.+++|+|++|.+|..+++.+...|++++++.+.    +++.. ..+.+.   ..+.+  |..+. .+.. +.+.....
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARD----QKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC----HHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999998888889998888753    33322 223332   12222  22221 2222 22222222


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++|.++|.
T Consensus        81 ~~~d~vi~~ag~   92 (237)
T PRK07326         81 GGLDVLIANAGV   92 (237)
T ss_pred             CCCCEEEECCCC
Confidence            359999999875

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.30  E-value=0.00037  Score=58.75  Aligned_cols=101  Identities=24%  Similarity=0.295  Sum_probs=60.3

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCc--EEEecChhhH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGAD--EVFTESQLEV  185 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~--~~~~~~~~~~  185 (314)
                      -+..+.+.+++++|++||-+|+ | .|..+..+|+..|+++.+++-    +++..+.+    ++.|..  ..+...+   
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGc-G-wG~~~~~~a~~~g~~v~gitl----S~~Q~~~a~~~~~~~gl~~~v~v~~~D---  120 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGC-G-WGGLAIYAAERYGCHVTGITL----SEEQAEYARERIREAGLEDRVEVRLQD---  120 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEEEEES-----HHHHHHHHHHHHCSTSSSTEEEEES----
T ss_pred             HHHHHHHHhCCCCCCEEEEeCC-C-ccHHHHHHHHHcCcEEEEEEC----CHHHHHHHHHHHHhcCCCCceEEEEee---
Confidence            3455667789999999999998 4 788888999999999999994    55555554    455532  2222221   


Q ss_pred             HHHHHHhcCCCCCcEEEec-----CCCcc----HHHHHHhcccCCEEEEE
Q 021311          186 KNVKGLLANLPEPALGFNC-----VGGNS----ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~-----~g~~~----~~~~~~~l~~~G~~v~~  226 (314)
                        .+++..   +||.|+..     +|.+.    +..+.+.|+|+|++++-
T Consensus       121 --~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  121 --YRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             --GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             --ccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence              112222   49998654     44332    36788899999998754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0018  Score=55.55  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=51.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCC--cE-E--EecChh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGA--DE-V--FTESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~--~~-~--~~~~~~-~~~~-i~~~~~~~  195 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+ ..++++.  .. .  .|-.+. .+++ +.+.....
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDL----EEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999888875    344433 3344542  11 1  233322 2222 22222223


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++++++|.
T Consensus        84 g~id~vI~nAG~   95 (296)
T PRK05872         84 GGIDVVVANAGI   95 (296)
T ss_pred             CCCCEEEECCCc
Confidence            469999999985

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.25  E-value=0.0065  Score=55.49  Aligned_cols=83  Identities=11%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecChh-hHHHHHHH-hcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTESQL-EVKNVKGL-LANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~-~~~~i~~~-~~~~g~~d~  200 (314)
                      +++++||+|++|++|..+++.+...|++++++.+.. ..+...+...+++... ..|..+. ..+.+.+. ....+++|+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~-~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA-AGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc-cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            578999999999999999999999999998876531 1222233334555432 2344332 23333332 222335999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +|.++|.
T Consensus       288 vi~~AG~  294 (450)
T PRK08261        288 VVHNAGI  294 (450)
T ss_pred             EEECCCc
Confidence            9999984

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.005  Score=51.71  Aligned_cols=83  Identities=13%  Similarity=0.073  Sum_probs=50.7

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCc--EEE--ecChh-hHHH-HHHHhcC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGAD--EVF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~--~~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .-+++++||+|++|.+|..++..+...|++++++.+.    ++..+.+ ......  ..+  |-.+. ..++ +.+....
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS----EAALAATAARLPGAKVTATVADVADPAQVERVFDTAVER   83 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4577999999999999999999998999998888853    3332222 222211  222  22221 1222 1111111


Q ss_pred             CCCCcEEEecCCCc
Q 021311          195 LPEPALGFNCVGGN  208 (314)
Q Consensus       195 ~g~~d~v~d~~g~~  208 (314)
                      .+++|.|+.++|..
T Consensus        84 ~~~~d~vi~~ag~~   97 (264)
T PRK12829         84 FGGLDVLVNNAGIA   97 (264)
T ss_pred             hCCCCEEEECCCCC
Confidence            23599999999854

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.23  E-value=0.0062  Score=48.75  Aligned_cols=77  Identities=19%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC----CCcEE-EecChhhHHHHHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL----GADEV-FTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l----g~~~~-~~~~~~~~~~i~~~~~~~g~  197 (314)
                      .+.+++|+|++|.+|..++..+...|++++.+.+    +.++.+.+ ..+    +.... .+..  ..+++.+...   +
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R----~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~---~   97 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR----DLERAQKAADSLRARFGEGVGAVETS--DDAARAAAIK---G   97 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHHHhhcCCcEEEeeCC--CHHHHHHHHh---c
Confidence            5789999999999999998888888888877764    33433332 222    22211 1222  2223333333   3


Q ss_pred             CcEEEecCCCcc
Q 021311          198 PALGFNCVGGNS  209 (314)
Q Consensus       198 ~d~v~d~~g~~~  209 (314)
                      .|+||.++....
T Consensus        98 ~diVi~at~~g~  109 (194)
T cd01078          98 ADVVFAAGAAGV  109 (194)
T ss_pred             CCEEEECCCCCc
Confidence            999999988765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0066  Score=50.93  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=48.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCC-Cc-EE--EecChh-hHHH-HHHHhcC-CCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLG-AD-EV--FTESQL-EVKN-VKGLLAN-LPE  197 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg-~~-~~--~~~~~~-~~~~-i~~~~~~-~g~  197 (314)
                      +++||+|++|.+|..+++.+...|++++.+.+    +.+..+.+ ..++ .. ..  .|-.+. .+.+ +...... .++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDI----NEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC----CHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57999999999999999988888999988875    34444333 2232 11 22  233322 2222 2222211 235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.|+|.
T Consensus        78 id~vi~~ag~   87 (260)
T PRK08267         78 LDVLFNNAGI   87 (260)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0042  Score=52.21  Aligned_cols=83  Identities=14%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      ++++||+|++|.+|..+++.+...|++++++.+.....++..+.++..+.... +  |..+. .... +.+.....+++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999998888999998888532111111222333444322 2  22221 1222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +++.|+|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999975

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0024  Score=54.77  Aligned_cols=80  Identities=20%  Similarity=0.315  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .+++++|+|++|++|.+.++.+...|++++++.+.    .++.+    .+...+... .+  |-.+ ...++ +.+....
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~----~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  114 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARR----EDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR  114 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999888889999888853    33332    222333322 22  2222 12222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++|+|.
T Consensus       115 ~g~id~li~~AG~  127 (293)
T PRK05866        115 IGGVDILINNAGR  127 (293)
T ss_pred             cCCCCEEEECCCC
Confidence            3359999999985

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.20  E-value=0.0051  Score=51.17  Aligned_cols=80  Identities=21%  Similarity=0.262  Sum_probs=49.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCC--Cc-EEE--ecCh-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLG--AD-EVF--TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg--~~-~~~--~~~~-~~~~~-i~~~~~~~  195 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.    .++.+.+ ..+.  .. ..+  |..+ ..++. +.+.....
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRN----EEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERF   79 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            46799999999999999998888889998888864    3332222 2222  21 122  2222 12222 22222223


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|+++.++|.
T Consensus        80 ~~~d~vi~~ag~   91 (251)
T PRK07231         80 GSVDILVNNAGT   91 (251)
T ss_pred             CCCCEEEECCCC
Confidence            359999999985

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0045  Score=52.05  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC--CCc-EEE--ecChh-hHHHHHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL--GAD-EVF--TESQL-EVKNVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l--g~~-~~~--~~~~~-~~~~i~~~~~~~g  196 (314)
                      +++++||+|++|.+|...+..+...|++++++.+.    +++.+.+ .++  +.. ..+  |-.+. ..+.+.+.....+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRN----AEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            46889999999999999998888899999888853    3333322 222  211 222  22221 2222222222133


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|+++.++|.
T Consensus        80 ~id~lv~~ag~   90 (263)
T PRK09072         80 GINVLINNAGV   90 (263)
T ss_pred             CCCEEEECCCC
Confidence            59999999885

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.18  E-value=0.011  Score=49.37  Aligned_cols=81  Identities=15%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh-hHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL-EVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~-~~~~-i~~~~~~~g~~d~  200 (314)
                      .+++++|+|++|++|.++++.+...|++++.+.+.   +++..+.++..+...+ .|-.+. ..++ +.+.....+++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~---~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS---AENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC---cHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999888899998877643   3333344443332221 232222 2222 2222223345999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ++.|+|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9999975

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0067  Score=50.85  Aligned_cols=84  Identities=20%  Similarity=0.229  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEE---EecChh-hHHHHHH-HhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEV---FTESQL-EVKNVKG-LLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~-~~~~i~~-~~~~~g~  197 (314)
                      .+++++|+|++|.+|..+++.+...|++ ++.+.+.........+.++..+....   .|..+. .++++.+ .....++
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR   84 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5689999999999999999999999999 66665421111111223334444321   233322 2222222 2222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        85 id~li~~ag~   94 (260)
T PRK06198         85 LDALVNAAGL   94 (260)
T ss_pred             CCEEEECCCc
Confidence            9999999985

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.16  E-value=0.0074  Score=48.50  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             hhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHH----HhCC-CcEEEecChhhHHHHHHH
Q 021311          119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKL----KGLG-ADEVFTESQLEVKNVKGL  191 (314)
Q Consensus       119 ~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~----~~lg-~~~~~~~~~~~~~~i~~~  191 (314)
                      ...+.++++++-.|+ |. |..++.+++..+  .+++++- .   +++..+.+    +.++ .+.+.....+..+.+.. 
T Consensus        35 ~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD-~---~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-  107 (198)
T PRK00377         35 KLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVD-K---DEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-  107 (198)
T ss_pred             HcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEE-C---CHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-
Confidence            367899999999999 55 888888888764  3455544 3   55555544    3455 22222111111111222 


Q ss_pred             hcCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEE
Q 021311          192 LANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~  226 (314)
                      ..  +.+|.||...+...    +..+.+.|+++|+++..
T Consensus       108 ~~--~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        108 IN--EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             cC--CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            11  25999998665432    36777889999999853

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.16  E-value=0.022  Score=45.92  Aligned_cols=115  Identities=10%  Similarity=0.042  Sum_probs=68.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|||.|+ |.+|..-++.+...|++++++...   .......+...|.-..+ ..+.....+    .   ++|+||-
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~---~~~~l~~l~~~~~i~~~-~~~~~~~dl----~---~~~lVi~   75 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEE---LESELTLLAEQGGITWL-ARCFDADIL----E---GAFLVIA   75 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHHHcCCEEEE-eCCCCHHHh----C---CcEEEEE
Confidence            4689999999 999999999999999988776642   22223333333321221 222211111    1   4999999


Q ss_pred             cCCCccH-HHHHHhcccCCEEEEEcCCCCCCcccccccceec-ceEEEEE
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGF  251 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~  251 (314)
                      +++.+.. .......+..|..|........ .++..+..+.+ ++++.-+
T Consensus        76 at~d~~ln~~i~~~a~~~~ilvn~~d~~e~-~~f~~pa~~~~g~l~iais  124 (205)
T TIGR01470        76 ATDDEELNRRVAHAARARGVPVNVVDDPEL-CSFIFPSIVDRSPVVVAIS  124 (205)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEECCCccc-CeEEEeeEEEcCCEEEEEE
Confidence            9998755 4555666677887776533222 23444444444 4555444

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.16  E-value=0.0061  Score=50.62  Aligned_cols=82  Identities=21%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH---HHHHHhCCCcEE---EecChh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA---KEKLKGLGADEV---FTESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~---~~~~~~lg~~~~---~~~~~~-~~~~-i~~~~~~~  195 (314)
                      .++++||+|++|.+|..+++.+...|+++++..+..  ....   .+.++..+....   .|..+. ..++ +.+.....
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPN--SPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCC--hHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            368899999999999999999999999988765431  2222   222333454432   222221 2222 22222222


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|+++.|+|.
T Consensus        80 ~~id~li~~ag~   91 (246)
T PRK12938         80 GEIDVLVNNAGI   91 (246)
T ss_pred             CCCCEEEECCCC
Confidence            359999999985

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.16  E-value=0.011  Score=49.50  Aligned_cols=106  Identities=15%  Similarity=0.225  Sum_probs=63.3

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC-CCc-EEE--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL-GAD-EVF--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l-g~~-~~~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .+++++|+|++  +++|.++++.+...|++++.+.+.. ..+++.+.+ .++ +.. ..+  |-.+ ..++. +.+....
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGE-RLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcc-cchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            47899999996  7999999988888999988775421 123333333 333 222 122  2222 22222 2223333


Q ss_pred             CCCCcEEEecCCCc-------c-----------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          195 LPEPALGFNCVGGN-------S-----------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g~~d~v~d~~g~~-------~-----------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .|++|++++|+|..       .                       ....++.|+++|++|.+++..
T Consensus        85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~  150 (257)
T PRK08594         85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLG  150 (257)
T ss_pred             CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccC
Confidence            34699999998731       0                       012345566789999988654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.15  E-value=0.007  Score=50.61  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=62.1

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc--EEE--ecCh-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD--EVF--TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~--~~~~-~~~~~-i~~~~~~~  195 (314)
                      .+++++|+|++  +++|.++++.+...|++++.+.+.    ++..+.++++...  ..+  |-.+ ...++ +.+.....
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN----DRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc----hHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            57899999997  699999998888899999887642    2222233333221  122  2222 12222 22222223


Q ss_pred             CCCcEEEecCCCcc------------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNS------------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      |++|++++++|...                              ...+++.|+.+|+++.+++..
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~  146 (252)
T PRK06079         82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFG  146 (252)
T ss_pred             CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccC
Confidence            46999999997410                              023345566779999887544

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.15  E-value=0.044  Score=49.47  Aligned_cols=143  Identities=17%  Similarity=0.239  Sum_probs=87.7

Q ss_pred             ccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----------------CCcccceEeeeccceEE---c-CCCCCHHH
Q 021311           43 AVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----------------SGTWQSYVVKDQSVWHK---V-SKDSPMEY  101 (314)
Q Consensus        43 ~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----------------~g~~~~~~~~~~~~~~~---~-p~~~~~~~  101 (314)
                      ..-|.|+++.+.+|++++++.-.|+.-+ +.+.                 .+.|++++.++. .+..   + +..++...
T Consensus        88 ~~~~~~a~~hl~~Va~GldS~V~GE~qI-~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~  165 (417)
T TIGR01035        88 ILTGESAVEHLFRVASGLDSMVVGETQI-LGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISS  165 (417)
T ss_pred             hcCchHHHHHHHHHHhhhhhhhcCChHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHH
Confidence            4568899999999999998866666332 1110                 456777776665 2222   2 22333222


Q ss_pred             hhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCcEEEec
Q 021311          102 AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGADEVFTE  180 (314)
Q Consensus       102 aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~~~~~~  180 (314)
                      +         |.....+.....++++++|+|+ |.+|..+++.++..|+..+.+++.   +.++ .+.++.+|.. .++.
T Consensus       166 ~---------Av~la~~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~r---s~~ra~~la~~~g~~-~i~~  231 (417)
T TIGR01035       166 A---------AVELAERIFGSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANR---TYERAEDLAKELGGE-AVKF  231 (417)
T ss_pred             H---------HHHHHHHHhCCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeC---CHHHHHHHHHHcCCe-EeeH
Confidence            2         1111223344567899999999 999999999999999655545433   4444 3466677764 2222


Q ss_pred             ChhhHHHHHHHhcCCCCCcEEEecCCCcc
Q 021311          181 SQLEVKNVKGLLANLPEPALGFNCVGGNS  209 (314)
Q Consensus       181 ~~~~~~~i~~~~~~~g~~d~v~d~~g~~~  209 (314)
                      .     .+.+...   ++|+||+|++.+.
T Consensus       232 ~-----~l~~~l~---~aDvVi~aT~s~~  252 (417)
T TIGR01035       232 E-----DLEEYLA---EADIVISSTGAPH  252 (417)
T ss_pred             H-----HHHHHHh---hCCEEEECCCCCC
Confidence            1     2222222   3999999998754

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0027  Score=53.08  Aligned_cols=77  Identities=14%  Similarity=0.039  Sum_probs=49.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcE-EEecChhhHHHHHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADE-VFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~-~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      ++++||+|++|.+|..+++.+...|++++++++.    ..+...    .+..+... ++..+-.+.+.+.....+  ++|
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~id   75 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI----APQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW--DVD   75 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC--CCC
Confidence            4689999999999999999999999999998863    332222    22333221 221121122344443333  499


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++|.|+|.
T Consensus        76 ~vi~~ag~   83 (257)
T PRK09291         76 VLLNNAGI   83 (257)
T ss_pred             EEEECCCc
Confidence            99999984

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.14  E-value=0.0025  Score=53.07  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      +++++||+|++|.+|..+++.+...|++++.+.+.....++..+.++..+... .+  |-.+ ..+++ +.......+++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999899998777743211111222233344432 22  2222 22223 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++|.++|.
T Consensus        84 d~vi~~ag~   92 (253)
T PRK08217         84 NGLINNAGI   92 (253)
T ss_pred             CEEEECCCc
Confidence            999999883

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.11  E-value=0.012  Score=49.33  Aligned_cols=83  Identities=18%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE---EEecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE---VFTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~---~~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|.++++.+...|++++.+.+.. ...+..+.+...+.+.   ..|..+. ...+ +.+.....+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999998888999988776431 1111222233334332   1233322 2222 33333333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999973

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0041  Score=51.29  Aligned_cols=84  Identities=12%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecCh-hhHHHH-HHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQ-LEVKNV-KGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~-~~~~~i-~~~~~~~g~~d~  200 (314)
                      +++++||+|++|.+|..+++.+...|++++.+.+......+..+..+..+...+ .|..+ ...+.+ .+.....+++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            478999999999999999988888899998888642222222223333333221 22222 122222 222222335999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ++.++|.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9999874

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0037  Score=52.28  Aligned_cols=80  Identities=16%  Similarity=0.091  Sum_probs=51.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcE-EEecChh-hHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADE-VFTESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~-~~~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      .+++++|+|++|.+|..+++.+...|++++++.+    +..+.+ ....++... ..|..+. ..++ +.+.....+++|
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDI----DPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVD   81 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            4789999999999999999999889999988875    333332 233444322 2233332 2222 222222233599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +++.++|.
T Consensus        82 ~vi~~ag~   89 (255)
T PRK06057         82 IAFNNAGI   89 (255)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0068  Score=51.45  Aligned_cols=83  Identities=17%  Similarity=0.166  Sum_probs=49.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC--c-EEE--ecChh-hHHHHHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA--D-EVF--TESQL-EVKNVKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~-~~~--~~~~~-~~~~i~~~~~~~g~~  198 (314)
                      ++++||+|++|.+|...+..+...|++++++.+.....++..+.....+.  . ..+  |..+. .++.+.+.....+++
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   82 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI   82 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence            57899999999999999988888899999887532111111122222221  1 222  32222 222233333333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.|+|.
T Consensus        83 d~vv~~ag~   91 (280)
T PRK06914         83 DLLVNNAGY   91 (280)
T ss_pred             eEEEECCcc
Confidence            999999875

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0038  Score=52.41  Aligned_cols=80  Identities=23%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHh-CCCc-EEEecChhhHHHHHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKG-LGAD-EVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~-lg~~-~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      .+++++|+|+++++|...++.+...|++++++.+.    .++.+.    +.. .+.. ..+..+-.+.+.+.+.....++
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~   81 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD----ADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGD   81 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCC
Confidence            47899999999999999999888899998888753    333222    222 2322 2222222222333333333346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.|+|.
T Consensus        82 id~lv~~ag~   91 (259)
T PRK06125         82 IDILVNNAGA   91 (259)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.06  E-value=0.029  Score=45.16  Aligned_cols=115  Identities=11%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|||.|+ |.+|...+..+...|++++++...  ..++-.+.+.. +. .....+......+       .++|+||-
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~--~~~~l~~l~~~-~~-i~~~~~~~~~~~l-------~~adlVia   76 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPE--LTENLVKLVEE-GK-IRWKQKEFEPSDI-------VDAFLVIA   76 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC--CCHHHHHHHhC-CC-EEEEecCCChhhc-------CCceEEEE
Confidence            5789999999 999999888888889888766532  12222233332 21 1121221111111       14999999


Q ss_pred             cCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceec-ceEEEEE
Q 021311          204 CVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGF  251 (314)
Q Consensus       204 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~  251 (314)
                      |++.+..+..+......+.+|.....+. ..++..+..+.+ ++++.-+
T Consensus        77 aT~d~elN~~i~~~a~~~~lvn~~d~~~-~~~f~~Pa~~~~g~l~iaIs  124 (202)
T PRK06718         77 ATNDPRVNEQVKEDLPENALFNVITDAE-SGNVVFPSALHRGKLTISVS  124 (202)
T ss_pred             cCCCHHHHHHHHHHHHhCCcEEECCCCc-cCeEEEeeEEEcCCeEEEEE
Confidence            9999888655554444566666653322 233444444444 4555443

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.06  E-value=0.0097  Score=53.23  Aligned_cols=110  Identities=15%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHH---HHHHHHhCCCcEEEecChhhHHHHHHHhcCCC-
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE---AKEKLKGLGADEVFTESQLEVKNVKGLLANLP-  196 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~---~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g-  196 (314)
                      +-..+.+|||+|++|.+|..++..+...|.+++++++...+...   ..+.........++..+-.+.+.+.+...+.+ 
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            34567899999999999999998888889999998864321110   11111112212222222112234444333221 


Q ss_pred             CCcEEEecCCCcc------H-------HHHHHhcccC--CEEEEEcCCC
Q 021311          197 EPALGFNCVGGNS------A-------SKVLKFLSQG--GTMVTYGGMS  230 (314)
Q Consensus       197 ~~d~v~d~~g~~~------~-------~~~~~~l~~~--G~~v~~g~~~  230 (314)
                      ++|+||+|++...      +       ..+++.++..  +++|.+++..
T Consensus       136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~  184 (390)
T PLN02657        136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAIC  184 (390)
T ss_pred             CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecc
Confidence            3999999987421      1       2344444433  4788887543

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.014  Score=49.89  Aligned_cols=107  Identities=18%  Similarity=0.261  Sum_probs=63.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGADE-VF--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|..++..+...|++++.+.+..... +...+.++..+... .+  |-.+ ...++ +.+.....++
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~  124 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR  124 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999988888899998877542111 11122233334332 22  2222 12222 2222222335


Q ss_pred             CcEEEecCCCcc---------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGNS---------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +|+++.++|...                           ...+++.+++.|++|.+++..
T Consensus       125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~  184 (290)
T PRK06701        125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSIT  184 (290)
T ss_pred             CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence            999999987410                           022344556678999988643

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=97.05  E-value=0.0089  Score=48.40  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=68.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc--------------------HHHHHHHHhCCCcEEEecChh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS--------------------DEAKEKLKGLGADEVFTESQL  183 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~--------------------~~~~~~~~~lg~~~~~~~~~~  183 (314)
                      ...+|+|.|. |++|.+++..+.+.|...+.+.+.+.-.                    +--.+.++.+..+.-++..+.
T Consensus        29 ~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~  107 (263)
T COG1179          29 KQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND  107 (263)
T ss_pred             hhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence            3589999999 9999999999999999888877654311                    111122333444433333333


Q ss_pred             h--HHHHHHHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcCCCC
Q 021311          184 E--VKNVKGLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       184 ~--~~~i~~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      +  .+.+.++...  ++|+|+||..+-..  ..+..|.+.+=.++..++..+
T Consensus       108 f~t~en~~~~~~~--~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~  157 (263)
T COG1179         108 FITEENLEDLLSK--GFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG  157 (263)
T ss_pred             hhCHhHHHHHhcC--CCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence            2  2556666666  59999999988555  344456666667777765544

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0048  Score=51.59  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|..++..+...|++++.+.+.....++..+.++..+.+. .+  |-.+. ..++ +.+.....+++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999998888899999888753211111122223334332 22  22221 2222 22222333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999999984

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.04  E-value=0.013  Score=45.65  Aligned_cols=99  Identities=18%  Similarity=0.225  Sum_probs=64.6

Q ss_pred             hhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC
Q 021311          102 AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       102 aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~  181 (314)
                      ....|+...++...+.+...--.+++|+|.|++..+|..++..++..|+++.++.+    +.                  
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r----~~------------------   78 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS----KT------------------   78 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC----Cc------------------
Confidence            35556666666666666544568899999999334699899899889997655553    21                  


Q ss_pred             hhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       182 ~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          +++.+...   .+|+||.+++.+.. --.+.++++-.++.++.+.
T Consensus        79 ----~~l~~~l~---~aDiVIsat~~~~i-i~~~~~~~~~viIDla~pr  119 (168)
T cd01080          79 ----KNLKEHTK---QADIVIVAVGKPGL-VKGDMVKPGAVVIDVGINR  119 (168)
T ss_pred             ----hhHHHHHh---hCCEEEEcCCCCce-ecHHHccCCeEEEEccCCC
Confidence                11222222   39999999998653 2223466666777777443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.04  E-value=0.0029  Score=53.13  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEEEecC--h-hhHHH-HHHHhcCCCCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEVFTES--Q-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~~~~~--~-~~~~~-i~~~~~~~g~~  198 (314)
                      ++||+|+++++|.++++.+...|++++.+.+.    +++.+    .++..+..+.+..+  + ...++ +.+.....+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i   77 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRN----EENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGI   77 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            68999999999999998888899998887753    33322    22233322333222  2 12222 22222233469


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        78 d~li~naG~   86 (259)
T PRK08340         78 DALVWNAGN   86 (259)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK09242 tropinone reductase; Provisional

Probab=97.03  E-value=0.011  Score=49.57  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .+++++|+|++|.+|..+++.+...|++++.+.+.
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~   42 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARD   42 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            47899999999999999999999999998888753

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.03  E-value=0.012  Score=49.66  Aligned_cols=97  Identities=18%  Similarity=0.297  Sum_probs=70.9

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+.+..---.|++++|.|.+..+|.-+++++...|++++++-+.   + .                  
T Consensus       136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~---t-~------------------  193 (286)
T PRK14175        136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR---S-K------------------  193 (286)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---c-h------------------
Confidence            45677777777777663323578999999997779999999999999999877731   1 0                  


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~  230 (314)
                          ++.+.+.   ..|+||.++|.+.+ ..  +.++++..++.+|...
T Consensus       194 ----~l~~~~~---~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        194 ----DMASYLK---DADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             ----hHHHHHh---hCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence                1222222   39999999999754 22  4688998899998544

>PRK06484 short chain dehydrogenase; Validated

Probab=97.03  E-value=0.0063  Score=56.69  Aligned_cols=103  Identities=21%  Similarity=0.296  Sum_probs=65.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE---EecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV---FTESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~---~~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|...++.+...|++++++.+    ++++.+.+ ..++....   .|..+. ..+. +.+.....|.
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDR----DAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGR  343 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999988889999988875    34444333 33443321   232222 2222 2222223346


Q ss_pred             CcEEEecCCCc----c-----------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGN----S-----------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~----~-----------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +|+++.|+|..    .                       ...++..|+.+|++|.+++..
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~  403 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA  403 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            99999999842    0                       123345556679999998653

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0055  Score=51.51  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             CCCCCEEEEcCCCc-HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCcEE--E--ecChh-hHHHHHH-Hhc
Q 021311          122 LNSGDSIVQNGATS-IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEV--F--TESQL-EVKNVKG-LLA  193 (314)
Q Consensus       122 ~~~~~~vlI~g~~g-~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~~--~--~~~~~-~~~~i~~-~~~  193 (314)
                      +..++++||+|++| ++|.++++.+...|++++++.+.....++..+.+++ ++...+  +  |..+. ..+++.+ ...
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            44579999999986 899999999999999988766432111122222222 443222  2  33222 2333222 222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|+++.|+|.
T Consensus        94 ~~g~id~li~~ag~  107 (262)
T PRK07831         94 RLGRLDVLVNNAGL  107 (262)
T ss_pred             HcCCCCEEEECCCC
Confidence            22469999999984

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.005  Score=51.28  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+++++|+|++|++|.++++.+...|++++.+.+..   .+..+... .+....+..+-.+.+.+.+..+   ++|++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~---~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~---~iDilVn   85 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK---INNSESND-ESPNEWIKWECGKEESLDKQLA---SLDVLIL   85 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc---hhhhhhhc-cCCCeEEEeeCCCHHHHHHhcC---CCCEEEE
Confidence            368999999999999999998889999998887532   12221111 1111222222222234444332   4999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      |+|.
T Consensus        86 nAG~   89 (245)
T PRK12367         86 NHGI   89 (245)
T ss_pred             CCcc
Confidence            9985

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0046  Score=52.06  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCc-EEE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGAD-EVF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      +++++||+|++|.+|..+++.+...|++++.+.+.    .++.+.    ++..+.. ..+  |..+. ..++ +.+....
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAART----ESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999888899999888753    333222    2222322 222  32222 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++|+++|.
T Consensus        85 ~~~id~vi~~Ag~   97 (263)
T PRK07814         85 FGRLDIVVNNVGG   97 (263)
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999984

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=97.00  E-value=0.014  Score=49.08  Aligned_cols=107  Identities=11%  Similarity=0.127  Sum_probs=62.9

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCC--CcHHHHHHHHhC-CCcEEE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRA--GSDEAKEKLKGL-GADEVF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~--~~~~~~~~~~~l-g~~~~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .+++++|+|++  +++|.+++..+...|++++.+.+...  ..++..+.+.+. +....+  |-.+. ..+. +.+....
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            47899999985  79999999888889999877653221  122233333322 222222  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCCc--------c----------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          195 LPEPALGFNCVGGN--------S----------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g~~d~v~d~~g~~--------~----------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .|++|++++|+|..        .                      ...+++.|+.+|+++.+++..
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~  150 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLG  150 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence            34699999999831        0                      123555667789999887643

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0056  Score=51.23  Aligned_cols=81  Identities=20%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCC-cEEE--ecCh-hhHHH-HHHHhc
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGA-DEVF--TESQ-LEVKN-VKGLLA  193 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~-~~~~--~~~~-~~~~~-i~~~~~  193 (314)
                      -.+++++|+|++|.+|..++..+...|++++++.+    ++++.+.+    ...+. ..++  |..+ ....+ +.+...
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r----~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASR----RVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET   82 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999889999888875    34443322    12222 2223  2222 12222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+++|+++.++|.
T Consensus        83 ~~~~~d~li~~ag~   96 (258)
T PRK06949         83 EAGTIDILVNNSGV   96 (258)
T ss_pred             hcCCCCEEEECCCC
Confidence            33469999999984

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.017  Score=47.80  Aligned_cols=106  Identities=16%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCc-EEEecC--h-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGAD-EVFTES--Q-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~-~~~~~~--~-~~~~~-i~~~~~~~g~  197 (314)
                      ++++++|+|++|.+|..+++.+...|++++.+.+..... .+..+.+...+.. ..+..+  + ...++ +.+.....++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR   83 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999999999999999988776532100 1112223333432 222222  2 12222 2222222235


Q ss_pred             CcEEEecCCCcc--------------------------HHHHHHhcccCCEEEEEcCC
Q 021311          198 PALGFNCVGGNS--------------------------ASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       198 ~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~  229 (314)
                      +|+++.++|...                          ...+++.++.+|+++.+++.
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (245)
T PRK12937         84 IDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTS  141 (245)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeec
Confidence            999999998421                          12233455567899998754

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0069  Score=50.70  Aligned_cols=86  Identities=17%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCC-cHHHHHHHHhCCC-c-EEE--ecChh-hHHH-HHHHh
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAG-SDEAKEKLKGLGA-D-EVF--TESQL-EVKN-VKGLL  192 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~-~~~~~~~~~~lg~-~-~~~--~~~~~-~~~~-i~~~~  192 (314)
                      .+..++++||+|++|++|.++++-+... |++++++.+.... .++..+.++..+. + +.+  |..+. ..++ +.+..
T Consensus         4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          4 AVGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            3567889999999999999999877666 4899888865321 1222233444442 1 223  22221 2222 33333


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      . .+++|+++.++|.
T Consensus        84 ~-~g~id~li~~ag~   97 (253)
T PRK07904         84 A-GGDVDVAIVAFGL   97 (253)
T ss_pred             h-cCCCCEEEEeeec
Confidence            2 2359999988875

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.98  E-value=0.075  Score=47.24  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGL  191 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~  191 (314)
                      |..-..+...--.++++||+|+ |-+|..++..+...|...+.++..  ..+...+.++++|+..+ .     .+++...
T Consensus       165 Av~lA~~~~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNR--T~erA~~La~~~~~~~~-~-----l~el~~~  235 (414)
T COG0373         165 AVELAKRIFGSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANR--TLERAEELAKKLGAEAV-A-----LEELLEA  235 (414)
T ss_pred             HHHHHHHHhcccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHHhCCeee-c-----HHHHHHh
Confidence            3333333333346799999999 999999999999999877777754  24444566788984432 1     2234444


Q ss_pred             hcCCCCCcEEEecCCCccH----HHHHHhcccCCE--EEEEcCC
Q 021311          192 LANLPEPALGFNCVGGNSA----SKVLKFLSQGGT--MVTYGGM  229 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~--~v~~g~~  229 (314)
                      ...   +|+||.+++.+..    ....+.+++.-+  +|.++.+
T Consensus       236 l~~---~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         236 LAE---ADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             hhh---CCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence            443   9999999998653    444455555433  5666643

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.0042  Score=53.80  Aligned_cols=84  Identities=25%  Similarity=0.213  Sum_probs=50.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC--CCc-EEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL--GAD-EVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~-~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .+++++|+|+++++|.+++..+...|++++.+.+.....++..+.+.+.  +.. ..+  |-.+. .+++ +.+.....+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4689999999999999999888889999998886421111222222221  111 122  32221 2222 222222334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            59999999984

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.019  Score=46.96  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +++||+|++|.+|..++..+... .+++++.+.    .+..+.+. .+.....+..+-.+.+.+.+.....+++|.++.+
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   78 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-HTLLLGGRP----AERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHN   78 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCC----HHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            68999999999999998777666 888888753    33333332 2222233333322334455544443359999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      +|.
T Consensus        79 ag~   81 (227)
T PRK08219         79 AGV   81 (227)
T ss_pred             CCc
Confidence            985

>PRK06484 short chain dehydrogenase; Validated

Probab=96.98  E-value=0.015  Score=54.27  Aligned_cols=80  Identities=19%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcE---EEecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADE---VFTESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~---~~~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+    +.++. +..++++...   ..|..+. ..++ +.+.....++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADR----NVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGR   79 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999988875    33433 3334455432   2233222 2222 2222222346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        80 iD~li~nag~   89 (520)
T PRK06484         80 IDVLVNNAGV   89 (520)
T ss_pred             CCEEEECCCc
Confidence            9999999874

>PRK06194 hypothetical protein; Provisional

Probab=96.98  E-value=0.0061  Score=51.95  Aligned_cols=83  Identities=23%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecC--hh-hHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTES--QL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~--~~-~~~~-i~~~~~~~g~~d  199 (314)
                      ++++||+|++|.+|..+++.+...|++++++.+.....++..+.+...+... .+..+  +. .+++ +.......+++|
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id   85 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVH   85 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999999999999998888889998877753111111112222223322 22222  21 2222 222222234599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +++.++|.
T Consensus        86 ~vi~~Ag~   93 (287)
T PRK06194         86 LLFNNAGV   93 (287)
T ss_pred             EEEECCCC
Confidence            99999985

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.97  E-value=0.021  Score=43.93  Aligned_cols=112  Identities=9%  Similarity=0.059  Sum_probs=63.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|+|.|+ |.+|..-++.+...|+++.++. ++ ..+    .+..++... .+.+......+      . ++|+|+-
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs-p~-~~~----~l~~l~~i~-~~~~~~~~~dl------~-~a~lVia   76 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS-PE-ICK----EMKELPYIT-WKQKTFSNDDI------K-DAHLIYA   76 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc-Cc-cCH----HHHhccCcE-EEecccChhcC------C-CceEEEE
Confidence            5789999999 9999988888888899888764 21 122    223343211 22221111111      1 4999999


Q ss_pred             cCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceec-ceEEEEE
Q 021311          204 CVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGF  251 (314)
Q Consensus       204 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~  251 (314)
                      +++.+..+..+......+.++........ .++..+..+.+ ++++.-+
T Consensus        77 aT~d~e~N~~i~~~a~~~~~vn~~d~~~~-~~f~~pa~v~~~~l~iais  124 (157)
T PRK06719         77 ATNQHAVNMMVKQAAHDFQWVNVVSDGTE-SSFHTPGVIRNDEYVVTIS  124 (157)
T ss_pred             CCCCHHHHHHHHHHHHHCCcEEECCCCCc-CcEEeeeEEEECCeEEEEE
Confidence            99988886655544443445554422222 23334444443 4554433

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0047  Score=51.63  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-E--EecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-V--FTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~--~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+.....++..+.++..+... .  .|-.+. ..++ +.+.....+++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            47899999999999999999998999999888753211111112222333222 2  222221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.|+|.
T Consensus        88 d~lv~~ag~   96 (253)
T PRK05867         88 DIAVCNAGI   96 (253)
T ss_pred             CEEEECCCC
Confidence            999999884

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.02  Score=47.70  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=29.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      .++++||+|+++++|.++++.+...|++++++.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~   35 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHY   35 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence            468999999999999999999999999988764

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.0061  Score=51.58  Aligned_cols=79  Identities=13%  Similarity=0.040  Sum_probs=50.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecChh-hHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      ++++||+|++|++|..+++.+...|++++++.+    ++++.+.+ +.++....+  |..+. ..++ +.+.....+++|
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDL----DEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            579999999999999999888888999888774    34443332 334422222  33322 2222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        81 ~li~~ag~   88 (273)
T PRK07825         81 VLVNNAGV   88 (273)
T ss_pred             EEEECCCc
Confidence            99999984

>PRK07985 oxidoreductase; Provisional

Probab=96.94  E-value=0.018  Score=49.33  Aligned_cols=105  Identities=12%  Similarity=0.151  Sum_probs=62.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+..  ..+..    +.++..+... .+  |-.+. ...+ +.+....
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPV--EEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCc--chhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            568999999999999999998888999998765321  11222    2223334322 22  22221 2222 2333333


Q ss_pred             CCCCcEEEecCCCcc---------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          195 LPEPALGFNCVGGNS---------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .|++|+++.++|...                           ...+++.|+.+|++|.+++..
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~  188 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQ  188 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCch
Confidence            346999999987410                           023444556779999987543

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0063  Score=51.64  Aligned_cols=80  Identities=20%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.+++..+...|++++.+.+.    .++.+    .++..+... .+  |-.+ ..+.+ +.+....
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~----~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   80 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVD----KPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL   80 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999888899998877643    33322    223334332 22  2222 12222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        81 ~g~id~li~nAg~   93 (275)
T PRK05876         81 LGHVDVVFSNAGI   93 (275)
T ss_pred             cCCCCEEEECCCc
Confidence            3469999999984

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0065  Score=50.74  Aligned_cols=84  Identities=23%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .+++++|+|++|.+|..+++.+...|++++++.+.....++..+.++..+... .+  |..+. ..+. +.+.....+++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999998888889999888854211111222333444332 22  22221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999999984

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.91  E-value=0.0072  Score=51.62  Aligned_cols=143  Identities=13%  Similarity=0.175  Sum_probs=77.6

Q ss_pred             CCCCCEEeeCCCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHH--HHHHHHHhhcCCCCCEEEEcCCCcHHHHH
Q 021311           63 LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLT--ALRMLEDFTTLNSGDSIVQNGATSIVGQC  140 (314)
Q Consensus        63 ~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t--a~~~l~~~~~~~~~~~vlI~g~~g~~G~~  140 (314)
                      +.+|++....+    .|.++-..+....+.+.+++.+-.+.    -..|  +...+.+  ...++++||-.|+ |. |..
T Consensus       106 ~~~g~~~~i~p----~w~~~~~~~~~~~i~ldpg~aFgtG~----h~tt~l~l~~l~~--~~~~g~~VLDvGc-Gs-G~l  173 (288)
T TIGR00406       106 VQFGKRFWICP----SWRDVPSDEDALIIMLDPGLAFGTGT----HPTTSLCLEWLED--LDLKDKNVIDVGC-GS-GIL  173 (288)
T ss_pred             EEEcCeEEEEC----CCcCCCCCCCcEEEEECCCCcccCCC----CHHHHHHHHHHHh--hcCCCCEEEEeCC-Ch-hHH
Confidence            55688666664    34333222344566666665443321    1222  2223322  2467899999998 54 777


Q ss_pred             HHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCcE-EEecChhhHHHHHHHhcCCCCCcEEEecCCCcc----HH
Q 021311          141 IIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGADE-VFTESQLEVKNVKGLLANLPEPALGFNCVGGNS----AS  211 (314)
Q Consensus       141 a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~-~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~----~~  211 (314)
                      ++.+++ .|+..+..++.   ++...+.+++    .+... +......    ......  ++||+|+.+.....    +.
T Consensus       174 ai~aa~-~g~~~V~avDi---d~~al~~a~~n~~~n~~~~~~~~~~~~----~~~~~~--~~fDlVvan~~~~~l~~ll~  243 (288)
T TIGR00406       174 SIAALK-LGAAKVVGIDI---DPLAVESARKNAELNQVSDRLQVKLIY----LEQPIE--GKADVIVANILAEVIKELYP  243 (288)
T ss_pred             HHHHHH-cCCCeEEEEEC---CHHHHHHHHHHHHHcCCCcceEEEecc----cccccC--CCceEEEEecCHHHHHHHHH
Confidence            766665 57755555554   5555555532    22111 1111110    111111  25999997665432    36


Q ss_pred             HHHHhcccCCEEEEEc
Q 021311          212 KVLKFLSQGGTMVTYG  227 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g  227 (314)
                      .+.+.|+++|.++..|
T Consensus       244 ~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       244 QFSRLVKPGGWLILSG  259 (288)
T ss_pred             HHHHHcCCCcEEEEEe
Confidence            6779999999999876

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.90  E-value=0.021  Score=48.14  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEe--------cChh-hHHH-H
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFT--------ESQL-EVKN-V  188 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~--------~~~~-~~~~-i  188 (314)
                      -+.+|..+++|+|++.++|++.+..++..|+.|.++.+    +.+++..+. .++....+.        ..+. .++. +
T Consensus        28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar----~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~  103 (331)
T KOG1210|consen   28 VKPKPRRHILITGGSSGLGLALALECKREGADVTITAR----SGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVI  103 (331)
T ss_pred             cccCccceEEEecCcchhhHHHHHHHHHccCceEEEec----cHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHH
Confidence            34566689999999999999999999999999999996    566665553 343222111        1111 1222 2


Q ss_pred             HHHhcCCCCCcEEEecCCC
Q 021311          189 KGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~  207 (314)
                      +++-.-.+.+|.+|.|+|.
T Consensus       104 ~~l~~~~~~~d~l~~cAG~  122 (331)
T KOG1210|consen  104 EELRDLEGPIDNLFCCAGV  122 (331)
T ss_pred             hhhhhccCCcceEEEecCc
Confidence            2222222359999999996

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.90  E-value=0.0071  Score=51.04  Aligned_cols=81  Identities=21%  Similarity=0.292  Sum_probs=52.9

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCc------EEEecC-hhhHHHHHH-
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGAD------EVFTES-QLEVKNVKG-  190 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~------~~~~~~-~~~~~~i~~-  190 (314)
                      -.++.+||+|+++++|.+.+..+...|++++++.+.    +++.+..    ...+..      ...|-. ++..+++.+ 
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~   81 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRS----EERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEF   81 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence            367899999999999999999999999999999964    3333222    233332      122332 222333222 


Q ss_pred             HhcC-CCCCcEEEecCCC
Q 021311          191 LLAN-LPEPALGFNCVGG  207 (314)
Q Consensus       191 ~~~~-~g~~d~v~d~~g~  207 (314)
                      .... .|++|++++++|.
T Consensus        82 ~~~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   82 AVEKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHHHhCCCCCEEEEcCCc
Confidence            2233 3579999999985

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.90  E-value=0.0086  Score=50.01  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+..  .++..+.++..+... .+  |-.+ ...++ +.+.....|++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999989999998776421  222233444555432 22  2222 22222 22222233469


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        85 D~lv~~ag~   93 (251)
T PRK12481         85 DILINNAGI   93 (251)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.89  E-value=0.0051  Score=51.71  Aligned_cols=80  Identities=16%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCc-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGAD-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|..+++.+...|++++.+.+    ++++.+.+ ..++.. ..+  |-.+. ..+. +.+.....++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLER----SAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGK   80 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999998899999988875    33443333 334332 222  22221 2222 3333333346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        81 id~li~~ag~   90 (263)
T PRK06200         81 LDCFVGNAGI   90 (263)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0066  Score=51.13  Aligned_cols=84  Identities=18%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EE--EecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EV--FTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~--~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      +++++||+|++|.+|...++.+...|++++.+.+......+..+.+...+.. ..  .|..+. .+++ +.+.....+++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999988889999988875311001111122233322 22  233222 2222 23333333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        88 D~vi~~ag~   96 (264)
T PRK07576         88 DVLVSGAAG   96 (264)
T ss_pred             CEEEECCCC
Confidence            999998863

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=96.88  E-value=0.027  Score=47.60  Aligned_cols=108  Identities=17%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH--hCCCcEEEecC-hhhH----HHHHHHhcC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK--GLGADEVFTES-QLEV----KNVKGLLAN  194 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~--~lg~~~~~~~~-~~~~----~~i~~~~~~  194 (314)
                      .-+++.|+|+|+.+++|..++.-+...|.+|++.+-.+.+.++-+...+  ++.. ..+|-. ++.+    +.+++.++.
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t-~~LDVT~~esi~~a~~~V~~~l~~  104 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRT-LQLDVTKPESVKEAAQWVKKHLGE  104 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCccee-EeeccCCHHHHHHHHHHHHHhccc
Confidence            4567889999999999999999999999999999955433333333332  1211 123332 2233    346666777


Q ss_pred             CCCCcEEEecCCCc---------------------------cHHHHHHhc-ccCCEEEEEcCCCC
Q 021311          195 LPEPALGFNCVGGN---------------------------SASKVLKFL-SQGGTMVTYGGMSK  231 (314)
Q Consensus       195 ~g~~d~v~d~~g~~---------------------------~~~~~~~~l-~~~G~~v~~g~~~~  231 (314)
                      .| .--++|++|-.                           .+...+..+ +..||+|.+++..+
T Consensus       105 ~g-LwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G  168 (322)
T KOG1610|consen  105 DG-LWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG  168 (322)
T ss_pred             cc-ceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence            76 88899999831                           012333444 35799999997665

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0054  Score=51.20  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEEecC--h-hhHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVFTES--Q-LEVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~--~-~~~~~-i~~~~~~~g~~d  199 (314)
                      |+++||+|+++++|.+.++.+...|++++++.+.....++..+.++..+.. ..+..+  + ...++ +.+.....+++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            578999999999999999999999999888775321111111222223322 233222  2 22222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        81 ~lI~~ag~   88 (252)
T PRK07677         81 ALINNAAG   88 (252)
T ss_pred             EEEECCCC
Confidence            99999974

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.87  E-value=0.011  Score=52.11  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|++|||+|++|.+|..+++.+...|.+|+++.+...........+ ..+... .+..+-.+.+.+.+.....+ +|+||
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~-~d~vi   80 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELL-NLAKKIEDHFGDIRDAAKLRKAIAEFK-PEIVF   80 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHH-hhcCCceEEEccCCCHHHHHHHHhhcC-CCEEE
Confidence            4689999999999999999999999999988875432221111111 112111 12222222344555444433 89999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .+++.
T Consensus        81 h~A~~   85 (349)
T TIGR02622        81 HLAAQ   85 (349)
T ss_pred             ECCcc
Confidence            99984

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.86  E-value=0.012  Score=46.32  Aligned_cols=120  Identities=16%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      -.|++|.|+|. |.+|...++.++.+|++++...+.    ..........+..    +.  .   +.++..   ..|+|+
T Consensus        34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~----~~~~~~~~~~~~~----~~--~---l~ell~---~aDiv~   96 (178)
T PF02826_consen   34 LRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRS----PKPEEGADEFGVE----YV--S---LDELLA---QADIVS   96 (178)
T ss_dssp             STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESS----CHHHHHHHHTTEE----ES--S---HHHHHH---H-SEEE
T ss_pred             cCCCEEEEEEE-cCCcCeEeeeeecCCceeEEeccc----CChhhhcccccce----ee--e---hhhhcc---hhhhhh
Confidence            36899999999 999999999999999999988853    3322223444431    11  1   222222   289999


Q ss_pred             ecCCCc-----cH-HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHH
Q 021311          203 NCVGGN-----SA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLA  276 (314)
Q Consensus       203 d~~g~~-----~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (314)
                      .+....     .+ ...+..|+++..+|.++   ...+                                -+-+.+++.+
T Consensus        97 ~~~plt~~T~~li~~~~l~~mk~ga~lvN~a---RG~~--------------------------------vde~aL~~aL  141 (178)
T PF02826_consen   97 LHLPLTPETRGLINAEFLAKMKPGAVLVNVA---RGEL--------------------------------VDEDALLDAL  141 (178)
T ss_dssp             E-SSSSTTTTTSBSHHHHHTSTTTEEEEESS---SGGG--------------------------------B-HHHHHHHH
T ss_pred             hhhccccccceeeeeeeeeccccceEEEecc---chhh--------------------------------hhhhHHHHHH
Confidence            888742     12 78899999999998876   2211                                0135677888


Q ss_pred             HcCCcc-ccceeeccccHH
Q 021311          277 REGKLK-YDMELVPFNNFQ  294 (314)
Q Consensus       277 ~~g~~~-~~~~~~~~~~~~  294 (314)
                      ++|++. .-.+++.-|..+
T Consensus       142 ~~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen  142 ESGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             HTTSEEEEEESS-SSSSSS
T ss_pred             hhccCceEEEECCCCCCCC
Confidence            888888 345665555444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0075  Score=49.61  Aligned_cols=83  Identities=16%  Similarity=0.190  Sum_probs=50.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecCh-hhHHHH-HHHhcCCC-C
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQ-LEVKNV-KGLLANLP-E  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~-~~~~~i-~~~~~~~g-~  197 (314)
                      .+++++|+|+++++|.+.+..+...|++++.+.+.....++..+.++..+... .+  |-.+ ...+++ .+.....| +
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999998888899998887753211111122333444332 22  2222 222222 22222223 5


Q ss_pred             CcEEEecCC
Q 021311          198 PALGFNCVG  206 (314)
Q Consensus       198 ~d~v~d~~g  206 (314)
                      +|++++++|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999997

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.86  E-value=0.021  Score=49.59  Aligned_cols=95  Identities=15%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|+|+||+|.+|..++..+...|.+++++++.    .++...+...+.+.+. .+-.+.+.+.+...+   +|+||.+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~----~~~~~~l~~~~v~~v~-~Dl~d~~~l~~al~g---~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN----LRKASFLKEWGAELVY-GDLSLPETLPPSFKG---VTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC----hHHhhhHhhcCCEEEE-CCCCCHHHHHHHHCC---CCEEEECCC
Confidence            69999999999999998888889999999863    3333333334543322 221123344444443   999999876


Q ss_pred             Ccc-------------HHHHHHhcccCC--EEEEEcCC
Q 021311          207 GNS-------------ASKVLKFLSQGG--TMVTYGGM  229 (314)
Q Consensus       207 ~~~-------------~~~~~~~l~~~G--~~v~~g~~  229 (314)
                      ...             ...+++.++..|  ++|.+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         74 SRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            421             124455555444  88888764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.86  E-value=0.0074  Score=53.65  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHH
Q 021311          109 PLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV  188 (314)
Q Consensus       109 ~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i  188 (314)
                      ....+..+.+..+++++++||-+|+  +.|..+..+++..|++++++.-    +++..+.+++.....-++....+   .
T Consensus       152 q~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la~~~g~~V~giDl----S~~~l~~A~~~~~~l~v~~~~~D---~  222 (383)
T PRK11705        152 QEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAAEHYGVSVVGVTI----SAEQQKLAQERCAGLPVEIRLQD---Y  222 (383)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhccCeEEEEECc---h
Confidence            4556666767788999999999998  3577788888888998887763    67777777653321111111111   1


Q ss_pred             HHHhcCCCCCcEEEec-----CCCc----cHHHHHHhcccCCEEEEEc
Q 021311          189 KGLLANLPEPALGFNC-----VGGN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~-----~g~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      ..+ .  +.+|.|+..     ++..    .+..+.+.|+|+|.+++..
T Consensus       223 ~~l-~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        223 RDL-N--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             hhc-C--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            222 1  259998754     2332    2367788999999998754

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.86  E-value=0.0084  Score=49.48  Aligned_cols=80  Identities=16%  Similarity=0.096  Sum_probs=50.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecCh-hhHHH-HHHHhcCCCCCcEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQ-LEVKN-VKGLLANLPEPALG  201 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~-~~~~~-i~~~~~~~g~~d~v  201 (314)
                      ++++||+|+++++|..+++.+...|++++++.+..   ++..+.++..+...+ .|..+ ...+. +.+.....+++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH---YPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc---hhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEE
Confidence            46899999999999999998888999999887642   222334444553221 22222 12222 22222223359999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      +.++|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            999984

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.86  E-value=0.0084  Score=50.15  Aligned_cols=84  Identities=21%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|..+++.+...|++++.+.+.....++..+.++..|... .+  |..+. ..+. +.+.....+++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999999888889998877653111111122233333322 22  32221 2222 22222233459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++|.++|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.021  Score=48.33  Aligned_cols=79  Identities=18%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      ++++||+|++|.+|..+++.+...|.+++.+.+.    .+..+.+ ..++.. ..+  |..+. ..+. +.......+++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARD----TATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999998888889998888753    3333333 223322 222  22221 2222 22222223359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |.++.|+|.
T Consensus        79 d~vi~~ag~   87 (275)
T PRK08263         79 DIVVNNAGY   87 (275)
T ss_pred             CEEEECCCC
Confidence            999999985

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=96.84  E-value=0.044  Score=40.37  Aligned_cols=96  Identities=15%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHh-------------
Q 021311          128 IVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLL-------------  192 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~-------------  192 (314)
                      |.|.|++|++|..++.+.+...  +++++.+..+ ..+.-.+.++++.+.++.-.++...+.+++..             
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~-n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGS-NIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESS-THHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCC-CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence            5789999999999999999887  6888777543 24555677788999888877765443433322             


Q ss_pred             -------cCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEE
Q 021311          193 -------ANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVT  225 (314)
Q Consensus       193 -------~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~  225 (314)
                             ... .+|+++....+- -..-.+..++.+=++.+
T Consensus        80 ~~l~~~~~~~-~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   80 EGLEELAEEP-EVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             HHHHHHHTHT-T-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHhcCC-CCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence                   222 378888776653 34666666666655443

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.84  E-value=0.0084  Score=52.09  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=50.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----Hh-CCC-c---EEEecCh---hhHHHHHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KG-LGA-D---EVFTESQ---LEVKNVKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~-lg~-~---~~~~~~~---~~~~~i~~~  191 (314)
                      .|++++|+||++++|.+.++.+...|++++.+.+.    +++.+.+    +. .+. .   ...|-.+   ...+++.+.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~----~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~  127 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARN----PDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKET  127 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECC----HHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHH
Confidence            58999999999999999998888889999988853    4443322    22 111 1   1223332   223445555


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      .++.. +|++++++|.
T Consensus       128 ~~~~d-idilVnnAG~  142 (320)
T PLN02780        128 IEGLD-VGVLINNVGV  142 (320)
T ss_pred             hcCCC-ccEEEEecCc
Confidence            54432 7799999874

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.0073  Score=50.53  Aligned_cols=80  Identities=18%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCc-E--EEecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGAD-E--VFTESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~-~--~~~~~~~-~~~~-i~~~~~~  194 (314)
                      .+++++|+|++|.+|..++..+...|++++++.+.    +++.+.+    ...+.. .  ..|..+. ..+. +.+....
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART----AERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999888999999888753    3222222    222332 1  2222221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|+++.++|.
T Consensus        80 ~g~~d~vi~~ag~   92 (258)
T PRK07890         80 FGRVDALVNNAFR   92 (258)
T ss_pred             cCCccEEEECCcc
Confidence            3459999999974

>PRK06720 hypothetical protein; Provisional

Probab=96.83  E-value=0.013  Score=45.73  Aligned_cols=84  Identities=14%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecChh---hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTESQL---EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~---~~~~-i~~~~~~~g~~  198 (314)
                      .++.++|+|+++++|...+..+...|++++++.+.....++..+.+...+... .+..+-.   ..++ +.+.....|++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999998888889998777643111111112223334332 2222211   1222 22223333469


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        95 DilVnnAG~  103 (169)
T PRK06720         95 DMLFQNAGL  103 (169)
T ss_pred             CEEEECCCc
Confidence            999999884

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.83  E-value=0.0064  Score=51.11  Aligned_cols=79  Identities=18%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCc-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGAD-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .+++++|+|++|++|..+++.+...|++++++.+    +.++.+.+.. .+.. ..+  |..+. ..++ +.+.....++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDK----SAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGK   79 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999988889999988774    3444444433 2322 122  22221 1222 3333333345


Q ss_pred             CcEEEecCC
Q 021311          198 PALGFNCVG  206 (314)
Q Consensus       198 ~d~v~d~~g  206 (314)
                      +|++++++|
T Consensus        80 id~li~~Ag   88 (262)
T TIGR03325        80 IDCLIPNAG   88 (262)
T ss_pred             CCEEEECCC
Confidence            999999987

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08264 short chain dehydrogenase; Validated

Probab=96.82  E-value=0.01  Score=48.96  Aligned_cols=77  Identities=18%  Similarity=0.241  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+++++|+|++|.+|..+++.+...|+ +++.+.+.    .++.+.   .+.. ..+..+-.+.+.+.+.....+.+|++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD----PESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC----hhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            468999999999999999999999999 87777753    332222   2222 22222222223333333333359999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      +.++|.
T Consensus        78 i~~ag~   83 (238)
T PRK08264         78 VNNAGI   83 (238)
T ss_pred             EECCCc
Confidence            999986

>PRK08589 short chain dehydrogenase; Validated

Probab=96.82  E-value=0.0095  Score=50.43  Aligned_cols=83  Identities=19%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EE--EecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EV--FTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~--~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.+.++.+...|++++++.+. ...++..+.+++.+.. ..  .|-.+. .++. +.+.....|++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            47899999999999999998888889999988753 1111222233333322 22  232222 2222 22222233459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999999974

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0054  Score=52.89  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .+++++|+|++|++|..+++.+...|++++++.+.
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999998888889999888753

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0083  Score=50.24  Aligned_cols=83  Identities=18%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|...++.+...|++++++.+..... +..+.++..+.. ..+  |..+. ..+. +.+.....+++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            468999999999999999988888999998887643211 112222333433 222  22221 1222 22222333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        85 d~vi~~ag~   93 (258)
T PRK08628         85 DGLVNNAGV   93 (258)
T ss_pred             CEEEECCcc
Confidence            999999984

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0062  Score=50.71  Aligned_cols=80  Identities=21%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHh--CCCc-EEEecC--hh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKG--LGAD-EVFTES--QL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~--lg~~-~~~~~~--~~-~~~~-i~~~~~~~  195 (314)
                      .+++++|+|++|.+|..+++.+...|++++.+.+.    .+... ....  .+.. ..+..+  +. .+++ +.+.....
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~   79 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD----AEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARW   79 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC----HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999998888889998888753    22222 2222  2322 222222  21 2222 22222222


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|+++.|+|.
T Consensus        80 ~~id~vi~~ag~   91 (252)
T PRK06138         80 GRLDVLVNNAGF   91 (252)
T ss_pred             CCCCEEEECCCC
Confidence            359999999985

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0077  Score=50.13  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=30.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~   39 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN   39 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999999999998888889999888753

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.81  E-value=0.008  Score=50.55  Aligned_cols=83  Identities=17%  Similarity=0.154  Sum_probs=49.5

Q ss_pred             CCCEEEEcCC--CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecCh-hhHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGA--TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQ-LEVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~--~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~-~~~~~-i~~~~~~~g  196 (314)
                      .++++||+|+  ++++|.+.++.+...|++++.+.+.. ..++..+.+ +..+....+  |-.+ +..++ +.+.....|
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4689999996  57999999988888999998765321 122233333 233433333  2222 12222 222233334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++|+|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            69999999974

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.80  E-value=0.061  Score=41.23  Aligned_cols=101  Identities=14%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHH
Q 021311          111 TALRMLEDFTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK  189 (314)
Q Consensus       111 ta~~~l~~~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~  189 (314)
                      ..+.++.+..+ .-.|++++|.|- |-+|.-.++.++.+|++|+++..    ++.+.-.+..-|... .        .+.
T Consensus         8 S~~d~i~r~t~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~----DPi~alqA~~dGf~v-~--------~~~   73 (162)
T PF00670_consen    8 SLVDGIMRATNLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEI----DPIRALQAAMDGFEV-M--------TLE   73 (162)
T ss_dssp             HHHHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-S----SHHHHHHHHHTT-EE-E---------HH
T ss_pred             hHHHHHHhcCceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEEC----ChHHHHHhhhcCcEe-c--------CHH
Confidence            34555555444 468999999999 99999999999999999987773    555555555455432 1        122


Q ss_pred             HHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          190 GLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      +...   ..|+++.++|....  .+-++.|+++.-+..+|.
T Consensus        74 ~a~~---~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh  111 (162)
T PF00670_consen   74 EALR---DADIFVTATGNKDVITGEHFRQMKDGAILANAGH  111 (162)
T ss_dssp             HHTT---T-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSS
T ss_pred             HHHh---hCCEEEECCCCccccCHHHHHHhcCCeEEeccCc
Confidence            2222   38999999998653  788899999988888773

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.80  E-value=0.013  Score=49.09  Aligned_cols=83  Identities=17%  Similarity=0.202  Sum_probs=51.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++.+|.+.++.+...|++++++.+. ...++..+.....+.. ..+  |-.+. ..+. +.+.....|++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999998999999888754 1112222333344433 222  22221 2222 22232333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        93 d~li~~ag~  101 (258)
T PRK06935         93 DILVNNAGT  101 (258)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.013  Score=50.07  Aligned_cols=85  Identities=12%  Similarity=0.102  Sum_probs=50.9

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC---------CCcHHHHHHHHhCCCcE-EE--ecCh-hhHHH-H
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR---------AGSDEAKEKLKGLGADE-VF--TESQ-LEVKN-V  188 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~---------~~~~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i  188 (314)
                      -.++++||+|+++++|.+.++.+...|++++++.+..         ...++..+.++..+... .+  |-.+ ..+++ +
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            3578999999999999999988888999988876431         00111122223334332 22  2222 12222 2


Q ss_pred             HHHhcCCCCCcEEEecCCC
Q 021311          189 KGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~  207 (314)
                      .+.....|++|++++|+|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            2333333469999999985

>PRK06398 aldose dehydrogenase; Validated

Probab=96.79  E-value=0.019  Score=48.20  Aligned_cols=74  Identities=14%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecChh-hHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      .++++||+|+++++|.+++..+...|++++++.+..    .+..      ....+  |-.+. .+++ +.+.....+++|
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~----~~~~------~~~~~~~D~~~~~~i~~~~~~~~~~~~~id   74 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKE----PSYN------DVDYFKVDVSNKEQVIKGIDYVISKYGRID   74 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc----cccC------ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999999999999998887532    1110      11122  32222 2222 222223334599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        75 ~li~~Ag~   82 (258)
T PRK06398         75 ILVNNAGI   82 (258)
T ss_pred             EEEECCCC
Confidence            99999884

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.79  E-value=0.017  Score=47.65  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=55.8

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      |+|+|++|.+|...++.+...+.++.++++..  +......++..|+..+ ..+-.+.+.+.+...+   +|.||.+.+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~--~~~~~~~l~~~g~~vv-~~d~~~~~~l~~al~g---~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP--SSDRAQQLQALGAEVV-EADYDDPESLVAALKG---VDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS--HHHHHHHHHHTTTEEE-ES-TT-HHHHHHHHTT---CSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEecc--chhhhhhhhcccceEe-ecccCCHHHHHHHHcC---CceEEeecCc
Confidence            78999999999999999999999999999763  3445566777888644 4443345566666654   9999999984

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.79  E-value=0.014  Score=51.33  Aligned_cols=94  Identities=19%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCC--CcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLG--ADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg--~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .+|||+|+ |.+|+.+++.+.+.+ .++.++.+    +.++.+.+....  .-..+..+-.+.+.+.++..+   +|+||
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdR----s~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~---~d~VI   73 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADR----SKEKCARIAELIGGKVEALQVDAADVDALVALIKD---FDLVI   73 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeC----CHHHHHHHHhhccccceeEEecccChHHHHHHHhc---CCEEE
Confidence            57999999 999999999988888 56665553    556666664432  122222333334566666665   79999


Q ss_pred             ecCCCccHHHHH-HhcccCCEEEEEc
Q 021311          203 NCVGGNSASKVL-KFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~~~~~~~-~~l~~~G~~v~~g  227 (314)
                      +|........++ .|++.+=.++...
T Consensus        74 n~~p~~~~~~i~ka~i~~gv~yvDts   99 (389)
T COG1748          74 NAAPPFVDLTILKACIKTGVDYVDTS   99 (389)
T ss_pred             EeCCchhhHHHHHHHHHhCCCEEEcc
Confidence            999987665555 5666676777665

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.78  E-value=0.011  Score=46.21  Aligned_cols=102  Identities=20%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEec------------------ChhhHH
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE------------------SQLEVK  186 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~------------------~~~~~~  186 (314)
                      ..+|+|+|+ |.+|+.|+.+++.+|+++++.-.    ...+.+....++...+...                  ......
T Consensus        20 p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
T PF01262_consen   20 PAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPDE----RPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYES   94 (168)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEES----SHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHhHCCCEEEeccC----CHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHH
Confidence            378999998 99999999999999999988874    6667777777777554331                  111112


Q ss_pred             HHHHHhcCCCCCcEEEecCCC-----cc--HHHHHHhcccCCEEEEEcCCCCCCc
Q 021311          187 NVKGLLANLPEPALGFNCVGG-----NS--ASKVLKFLSQGGTMVTYGGMSKKPI  234 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~-----~~--~~~~~~~l~~~G~~v~~g~~~~~~~  234 (314)
                      .+.+....   +|+++.+.-.     +.  ....++.|+++..++.+..-.+..+
T Consensus        95 ~f~~~i~~---~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~gG~i  146 (168)
T PF01262_consen   95 NFAEFIAP---ADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQGGSI  146 (168)
T ss_dssp             HHHHHHHH----SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGGT-SB
T ss_pred             HHHHHHhh---CcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecCCCCc
Confidence            34444433   8998864321     22  2788899999999999986555433

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.0079  Score=49.29  Aligned_cols=77  Identities=16%  Similarity=0.144  Sum_probs=49.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecChh-hHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQL-EVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~~-~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++++|+|++|.+|...++.+...|++++++.+..    ++.+.+++++....+  |-.+. ..+++.+...+. ++|+++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~id~vi   76 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGP----QQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQ-RFDLLF   76 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC----cchHHHHhccccceEEcCCCCHHHHHHHHHHhhcC-CCCEEE
Confidence            5799999999999999988888899998888642    223333333322222  22222 233333333332 499999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .++|.
T Consensus        77 ~~ag~   81 (225)
T PRK08177         77 VNAGI   81 (225)
T ss_pred             EcCcc
Confidence            99864

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.77  E-value=0.085  Score=44.40  Aligned_cols=154  Identities=14%  Similarity=0.088  Sum_probs=94.6

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh------------hhHHHH
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ------------LEVKNV  188 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~------------~~~~~i  188 (314)
                      .--+...+++.|. |..|++++..++..|+-|...-    -...+.+..+++|+...-..++            ++..+-
T Consensus       160 gtv~pA~vlv~G~-Gvagl~aiata~~lG~iVt~rd----lrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q  234 (356)
T COG3288         160 GTVSPAKVLVIGA-GVAGLAAIATAVRLGAIVTARD----LRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQ  234 (356)
T ss_pred             ccccchhhhhhhH-HHHHHHHHHHHhhcceEEehhh----hhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHH
Confidence            3356688899999 9999999999999998665433    2556666777777754322111            121111


Q ss_pred             HHH-hcCCCCCcEEEecCCCc-----c--HHHHHHhcccCCEEEEEcCCCCCCccc--ccccceecceEEEEEec-hhhc
Q 021311          189 KGL-LANLPEPALGFNCVGGN-----S--ASKVLKFLSQGGTMVTYGGMSKKPITV--STSAFIFKDLSLKGFWL-QKWL  257 (314)
Q Consensus       189 ~~~-~~~~g~~d~v~d~~g~~-----~--~~~~~~~l~~~G~~v~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~  257 (314)
                      .++ ...-.++|+|+-++--+     .  .......|+||+.+|.+....+.+...  +..-...+++++.|... ...+
T Consensus       235 ~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~nlp~r~  314 (356)
T COG3288         235 AELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTNLPGRL  314 (356)
T ss_pred             HHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecCcchhh
Confidence            111 11112499999987432     1  278889999999999998777666544  33446668899998642 2222


Q ss_pred             cccCHHHHHHHHHHHHHHHHcC
Q 021311          258 SSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      .......|.+.+-.+++++-+.
T Consensus       315 a~~aS~LYa~Nl~~~l~ll~~~  336 (356)
T COG3288         315 AAQASQLYATNLVNLLKLLCKK  336 (356)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcc
Confidence            2122333444455555555443

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0095  Score=49.96  Aligned_cols=84  Identities=18%  Similarity=0.131  Sum_probs=49.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh--CCCc-EEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG--LGAD-EVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~--lg~~-~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .+++++|+|+++++|.++++.+...|++++.+.+.....++..+.+..  .+.. ..+  |..+. ..+. +.+.....+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            468999999999999999999889999998887532111111122222  2222 122  22221 2222 222222234


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|+++.++|.
T Consensus        86 ~id~li~~ag~   96 (260)
T PRK07063         86 PLDVLVNNAGI   96 (260)
T ss_pred             CCcEEEECCCc
Confidence            59999999984

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.77  E-value=0.01  Score=50.34  Aligned_cols=84  Identities=14%  Similarity=0.087  Sum_probs=50.8

Q ss_pred             CCCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecCh-hhHHH-HHHHhcCC
Q 021311          123 NSGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       123 ~~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~-~~~~~-i~~~~~~~  195 (314)
                      -.++++||+|++  +++|.+.++.+...|++++.+.+.. ...++.+.+ ++++....+  |-.+ ...++ +.+.....
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~-~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD-ALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            357899999996  7999999998888999988765321 112333333 345543333  2222 12233 22223333


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      |++|++++++|.
T Consensus        87 g~iD~lv~nAG~   98 (272)
T PRK08159         87 GKLDFVVHAIGF   98 (272)
T ss_pred             CCCcEEEECCcc
Confidence            469999999873

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.76  E-value=0.015  Score=50.33  Aligned_cols=99  Identities=18%  Similarity=0.241  Sum_probs=63.0

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHH----HhCCCcEEEecChhhHHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKL----KGLGADEVFTESQLEVKNVKGL  191 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~~~~~~~~i~~~  191 (314)
                      +...++++++||..|+ | .|..++.+++..+.  .++++- .   +++..+.+    +..|.+.+.....+..+.+   
T Consensus        74 ~~L~i~~g~~VLDIG~-G-tG~~a~~LA~~~~~~g~VvgVD-i---s~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~---  144 (322)
T PRK13943         74 EWVGLDKGMRVLEIGG-G-TGYNAAVMSRVVGEKGLVVSVE-Y---SRKICEIAKRNVRRLGIENVIFVCGDGYYGV---  144 (322)
T ss_pred             HhcCCCCCCEEEEEeC-C-ccHHHHHHHHhcCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCcEEEEeCChhhcc---
Confidence            3467889999999998 5 59999999988764  355444 2   45544333    4466553322222111111   


Q ss_pred             hcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEE
Q 021311          192 LANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTY  226 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~  226 (314)
                       ...+.+|+|+.+.+.... ...++.|+++|+++..
T Consensus       145 -~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        145 -PEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             -cccCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence             111249999998876544 5778899999998874

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.025  Score=48.00  Aligned_cols=104  Identities=20%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHHHHHHhcCCCCCcE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKNVKGLLANLPEPAL  200 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~i~~~~~~~g~~d~  200 (314)
                      +++++|+|+ |++|.+++..+. .|++++.+.+.....++..+.++..+... .+  |-.+. ..+.+.+.....+++|+
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            467899998 799999998775 79999888753211111122223334322 22  32222 22332222222346999


Q ss_pred             EEecCCCcc-------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          201 GFNCVGGNS-------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       201 v~d~~g~~~-------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +++++|...                   +..+++.|+.+|+++.+++..
T Consensus        80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            999998521                   123344556678777776543

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0085  Score=49.99  Aligned_cols=84  Identities=15%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|.+.++.+...|++++.+.+.....+...+.+...+.. ..+  |..+. ..+. +.+.....+++
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            3589999999999999999999989999988875321111112222233332 222  22221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        87 d~li~~ag~   95 (252)
T PRK07035         87 DILVNNAAA   95 (252)
T ss_pred             CEEEECCCc
Confidence            999999973

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.74  E-value=0.016  Score=48.18  Aligned_cols=82  Identities=20%  Similarity=0.249  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|..++..+...|++++.+.+..  ..+..+.+..++... .+  |..+. .... +.+.....+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   81 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHI   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999988888999988887531  122233444455332 22  22221 2222 22222233359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        82 d~li~~ag~   90 (248)
T TIGR01832        82 DILVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999999975

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.73  E-value=0.0098  Score=49.84  Aligned_cols=80  Identities=20%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCc-EEE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGAD-EVF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|..+++.+...|++++.+.+.    .++.+.    +...+.. ..+  |..+. .+++ +.+....
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~   86 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARK----AEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER   86 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999998888899998888753    333222    2233332 122  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|.++.++|.
T Consensus        87 ~~~id~vi~~ag~   99 (259)
T PRK08213         87 FGHVDILVNNAGA   99 (259)
T ss_pred             hCCCCEEEECCCC
Confidence            2359999999884

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.73  E-value=0.014  Score=48.27  Aligned_cols=84  Identities=14%  Similarity=0.215  Sum_probs=50.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      +++++||+|++|.+|...++.+...|.+++.+.+.....+.....++..+....+   |..+. ..++ +.+.....+.+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            3578999999999999999888888999877775422111112233334443322   22222 1222 22222222358


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |.++.++|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999999975

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.72  E-value=0.0096  Score=50.51  Aligned_cols=83  Identities=13%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .+++++|+|++|.+|.+.++.+...|++++++.+.....++..+.++..+... .+  |..+. ..+. +.+.....+++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999988899998887753111111122223333321 22  22221 2222 22222223459


Q ss_pred             cEEEecCC
Q 021311          199 ALGFNCVG  206 (314)
Q Consensus       199 d~v~d~~g  206 (314)
                      |+++.++|
T Consensus        89 d~li~~ag   96 (278)
T PRK08277         89 DILINGAG   96 (278)
T ss_pred             CEEEECCC
Confidence            99999988

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.72  E-value=0.0093  Score=49.58  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|...+..+...|++++++.+.........+.+...+.. .++  |-.+. .+++ +.+.....+++
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4679999999999999999888888999988886421112222223333332 222  22221 1222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.+++.
T Consensus        85 d~vi~~ag~   93 (251)
T PRK12826         85 DILVANAGI   93 (251)
T ss_pred             CEEEECCCC
Confidence            999999865

>PRK08643 acetoin reductase; Validated

Probab=96.71  E-value=0.013  Score=49.04  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      ++++||+|++|.+|..+++.+...|++++++.+..+..++....+...+... .+  |..+. ...+ +.+.....+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999999999999999998899999888753211111122223333322 22  22221 2222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +++.|+|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99999974

>PRK05717 oxidoreductase; Validated

Probab=96.69  E-value=0.017  Score=48.33  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-E--EecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-V--FTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~--~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .|++++|+|++|.+|..++..+...|++++++.+.   .+...+..+.++... .  .|-.+. ..++ +.+.....|++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD---RERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999998888889998887642   122222333444322 2  222221 2222 23333333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.016  Score=48.07  Aligned_cols=80  Identities=18%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcE-EE--ecCh-hhHHHHH-HHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADE-VF--TESQ-LEVKNVK-GLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~-~~--~~~~-~~~~~i~-~~~~~~g~  197 (314)
                      ++++++|+|++|.+|...++.+...|++++.+.+    +++.. +..++++... .+  |..+ .....+. ......++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGR----DPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGR   80 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC----CHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999887774    33333 2334455432 22  2222 1222222 22222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        81 id~vi~~ag~   90 (249)
T PRK06500         81 LDAVFINAGV   90 (249)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.69  E-value=0.028  Score=44.71  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             CCCEEEEcCC-CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCc-EEEecCh-hhH----HHHHHHhcCC
Q 021311          124 SGDSIVQNGA-TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGAD-EVFTESQ-LEV----KNVKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~-~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~-~~~~~~~-~~~----~~i~~~~~~~  195 (314)
                      ..+.|||+|+ .|++|++.+.-....|+.|+++.+    +.+....+. ..|.. .-+|-.+ +.+    ..++....  
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR----~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~--   79 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATAR----RLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPD--   79 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcc----ccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCC--
Confidence            4578899987 799999999888899999999996    444444443 55532 1233322 222    23444433  


Q ss_pred             CCCcEEEecCCCccH-------------------------HHH--HHhcccCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNSA-------------------------SKV--LKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~~-------------------------~~~--~~~l~~~G~~v~~g~~~  230 (314)
                      |+.|+.++++|-++.                         .++  -...+..|+||.+|+..
T Consensus        80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~  141 (289)
T KOG1209|consen   80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLA  141 (289)
T ss_pred             CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEeccee
Confidence            379999999986421                         111  12457789999999654

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.0093  Score=49.97  Aligned_cols=79  Identities=16%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCC--c-EEE--ecChh-hHHH-HHHHhcCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGA--D-EVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~--~-~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      ++++||+|++|.+|..++..+...|++++++.+    +.++.+.+ +.+..  . ..+  |-.+. .+.+ +.+.....+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   77 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVAR----RTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHG   77 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            468999999999999999888888999888775    33333322 22221  1 122  22221 2222 233333334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      .+|++++++|.
T Consensus        78 ~id~lv~~ag~   88 (257)
T PRK07024         78 LPDVVIANAGI   88 (257)
T ss_pred             CCCEEEECCCc
Confidence            59999999874

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.017  Score=49.05  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    +.++.+.+.. .+... .+  |..+. ...+ +.+.....++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r----~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVR----SEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeC----CHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            3578999999999999999988888999998885    3444433333 22211 22  32222 2222 2222222335


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        79 ~d~vv~~ag~   88 (277)
T PRK06180         79 IDVLVNNAGY   88 (277)
T ss_pred             CCEEEECCCc
Confidence            9999999986

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=96.68  E-value=0.033  Score=47.89  Aligned_cols=31  Identities=16%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             CCCEEEEcCC--CcHHHHHHHHHHHHcCCcEEE
Q 021311          124 SGDSIVQNGA--TSIVGQCIIQIARHRGIHSIN  154 (314)
Q Consensus       124 ~~~~vlI~g~--~g~~G~~a~~la~~~g~~vi~  154 (314)
                      .|+++||+|+  ++++|.++++.+...|++++.
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~   40 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV   40 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence            5899999999  799999999999999999988

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.016  Score=48.38  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE--EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE--VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|..+++.+...|++++.+.+.    ....+....+....  .+  |-.+. ..+. +.+.....++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   89 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS----EDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR   89 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999998888899998888753    22222333222111  22  22221 1222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        90 ~d~vi~~ag~   99 (255)
T PRK06841         90 IDILVNSAGV   99 (255)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.0095  Score=49.26  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .+++++|+|++|.+|...++.+...|++++++.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~   39 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARH   39 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            45899999999999999998888899998888864

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.0092  Score=50.36  Aligned_cols=78  Identities=15%  Similarity=0.184  Sum_probs=48.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecChh-hHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTESQL-EVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~-~~~~-i~~~~~~~g~~d~  200 (314)
                      .+++++|+|++|.+|..+++.+...|++++++.+.    .++.+..  .+... ..|..+. ..++ +.......|++|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~----~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~   76 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN----PARAAPI--PGVELLELDVTDDASVQAAVDEVIARAGRIDV   76 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC----hhhcccc--CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence            35789999999999999998888889999888853    2222211  12211 2233222 2222 2223333346999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +++|+|.
T Consensus        77 li~~ag~   83 (270)
T PRK06179         77 LVNNAGV   83 (270)
T ss_pred             EEECCCC
Confidence            9999985

>PRK08017 oxidoreductase; Provisional

Probab=96.66  E-value=0.013  Score=48.93  Aligned_cols=76  Identities=21%  Similarity=0.246  Sum_probs=51.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh-hH----HHHHHHhcCCCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL-EV----KNVKGLLANLPEPA  199 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~-~~----~~i~~~~~~~g~~d  199 (314)
                      ++++|+|++|.+|.++++.+...|++++++.+    +.++.+.++..+...+ .|..+. ..    +.+.....+  .+|
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~--~~~   76 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACR----KPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDN--RLY   76 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----CHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCC--CCe
Confidence            57999999999999999999989999888774    4555666666665433 233332 11    222222222  489


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      .++.++|.
T Consensus        77 ~ii~~ag~   84 (256)
T PRK08017         77 GLFNNAGF   84 (256)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.66  E-value=0.015  Score=48.50  Aligned_cols=84  Identities=17%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+.....++..+.++..+... .+  |-.+. ..+. +.+.....+++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999998888899998887753111111112223233222 22  22221 2222 22222223459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.66  E-value=0.012  Score=49.43  Aligned_cols=83  Identities=12%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++.++|+|+++  ++|.++++.+...|++++...+. ...++..+.+ ...|....+  |-.+. ..++ +.+.....|
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~-~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS-EVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc-hHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999976  79999998888889998876532 1112222222 233443322  33222 2233 222223334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        86 ~iDilVnnag~   96 (260)
T PRK06603         86 SFDFLLHGMAF   96 (260)
T ss_pred             CccEEEEcccc
Confidence            69999999873

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.65  E-value=0.0063  Score=49.15  Aligned_cols=104  Identities=22%  Similarity=0.252  Sum_probs=61.1

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCcEE--EecChhhHHHHHHHh
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGADEV--FTESQLEVKNVKGLL  192 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~~--~~~~~~~~~~i~~~~  192 (314)
                      .+...++||++||-+|+  +.|+.++-+++..|.  .|+.+-..+.-.+..++.+..++...+  +..+...     .+.
T Consensus        65 l~~L~l~pg~~VLeIGt--GsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~-----g~~  137 (209)
T PF01135_consen   65 LEALDLKPGDRVLEIGT--GSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE-----GWP  137 (209)
T ss_dssp             HHHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG-----TTG
T ss_pred             HHHHhcCCCCEEEEecC--CCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh-----ccc
Confidence            34577999999999997  448888888888775  345444221111222333445565432  2222111     111


Q ss_pred             cCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          193 ANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      .. +.||.|+-+++-+.. ...++.|++||++|..-.
T Consensus       138 ~~-apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  138 EE-APFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GG--SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred             cC-CCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence            11 259999998887766 678899999999998653

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.65  E-value=0.051  Score=43.90  Aligned_cols=116  Identities=9%  Similarity=0.038  Sum_probs=71.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|+.|||.|+ |.+|..=+.++...|++++++...-  .++-.......+ ...+. +....+.+    .   .+++||-
T Consensus        11 ~~k~VlvvGg-G~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~~~~~~~-i~~~~-~~~~~~~~----~---~~~lvia   78 (210)
T COG1648          11 EGKKVLVVGG-GSVALRKARLLLKAGADVTVVSPEF--EPELKALIEEGK-IKWIE-REFDAEDL----D---DAFLVIA   78 (210)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHHHHHhcC-cchhh-cccChhhh----c---CceEEEE
Confidence            5789999999 9999999999999999999888541  232233333332 11111 11111111    1   3899999


Q ss_pred             cCCCccH-HHHHHhcccCCEEEEEcCCCCCCccccccc-ceecceEEEEEe
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSA-FIFKDLSLKGFW  252 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~  252 (314)
                      +++.+.. ....+..++.+.+|.....+.. .++..+. +-...+++.-+.
T Consensus        79 At~d~~ln~~i~~~a~~~~i~vNv~D~p~~-~~f~~Pa~~~r~~l~iaIsT  128 (210)
T COG1648          79 ATDDEELNERIAKAARERRILVNVVDDPEL-CDFIFPAIVDRGPLQIAIST  128 (210)
T ss_pred             eCCCHHHHHHHHHHHHHhCCceeccCCccc-CceecceeeccCCeEEEEEC
Confidence            9998777 5666777888888887744332 2333333 333445554443

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.014  Score=48.30  Aligned_cols=80  Identities=21%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcE-EE--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADE-VF--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .+++++|+|++|.+|..++..+...|.+++++.+.    +++.+.    ++..+... .+  |-.+ ..... +.+....
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARS----QDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ   80 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999998899998888853    332222    22333222 22  2222 12222 2222223


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|+++.++|.
T Consensus        81 ~~~id~lv~~ag~   93 (241)
T PRK07454         81 FGCPDVLINNAGM   93 (241)
T ss_pred             cCCCCEEEECCCc
Confidence            3459999999985

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.65  E-value=0.0098  Score=50.00  Aligned_cols=83  Identities=13%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             CCCEEEEcCC--CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecCh-hhHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGA--TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQ-LEVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~--~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~-~~~~~-i~~~~~~~g  196 (314)
                      .++++||+|+  ++++|.++++.+...|++++.+.+.. ...++.+.+ ++++....+  |-.+ +..+. +.......|
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGD-RFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccch-HHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            4789999996  57999999988888999988764221 123333332 344433222  2222 12222 222222234


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            69999999874

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.036  Score=46.18  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=28.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      .+++++|+|++|.+|..+++.+...|+++++..
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~   37 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHY   37 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence            358999999999999999998888899887654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.64  E-value=0.028  Score=46.74  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=62.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH---HHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK---EKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~---~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      ++++||+|++|.+|...++-+...|++++...+..  .+...   ..+++.+.. ..+  |..+. ...+ +.+.....+
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKR--AEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG   83 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC--hHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence            68999999999999999988888999987776532  12221   222334432 222  22221 1111 222222223


Q ss_pred             CCcEEEecCCCcc--------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          197 EPALGFNCVGGNS--------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       197 ~~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ++|++|.++|...                          ...+++.++..|+++.+++..
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~  143 (252)
T PRK06077         84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVA  143 (252)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchh
Confidence            5999999998410                          123445566778999998644

>PLN02253 xanthoxin dehydrogenase

Probab=96.64  E-value=0.012  Score=50.08  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC--c-EE--EecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA--D-EV--FTESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~-~~--~~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++|.+|.++++.+...|++++.+.+.   .+...+....++.  . ..  .|-.+. .++. +.......+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ---DDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            36899999999999999998888889998887642   1211222233321  1 12  222221 2222 222222234


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            59999999974

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.64  E-value=0.0097  Score=49.52  Aligned_cols=84  Identities=15%  Similarity=0.227  Sum_probs=48.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec-CCCCcHHHHHHHHhCCCcE-EEecC--h-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR-DRAGSDEAKEKLKGLGADE-VFTES--Q-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~-~~~~~--~-~~~~~-i~~~~~~~g~  197 (314)
                      +++++||+|++|.+|..++..+...|++++++.. .....++..+.++..+... .+..+  + ..++. +.+.....++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4679999999999999999999989999876432 2111111122333444432 22222  2 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        83 id~vi~~ag~   92 (250)
T PRK08063         83 LDVFVNNAAS   92 (250)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.64  E-value=0.039  Score=46.08  Aligned_cols=100  Identities=10%  Similarity=0.095  Sum_probs=59.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-h-CCCcEE-EecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-G-LGADEV-FTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~-lg~~~~-~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .+.+|||+|++|.+|..+++.+...|.+++++++.    .++..... . .+...+ .|..+. .+.+.+....  ++|+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~----~~~~~~~~~~~~~~~~~~~Dl~d~-~~~l~~~~~~--~~d~   88 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD----VDKAKTSLPQDPSLQIVRADVTEG-SDKLVEAIGD--DSDA   88 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC----HHHHHHhcccCCceEEEEeeCCCC-HHHHHHHhhc--CCCE
Confidence            46899999999999999998888889999888853    33322221 1 112211 233221 1233333321  3999


Q ss_pred             EEecCCCcc--------------HHHHHHhccc--CCEEEEEcCCC
Q 021311          201 GFNCVGGNS--------------ASKVLKFLSQ--GGTMVTYGGMS  230 (314)
Q Consensus       201 v~d~~g~~~--------------~~~~~~~l~~--~G~~v~~g~~~  230 (314)
                      +|.++|...              ...+++.+..  .+++|.+++..
T Consensus        89 vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~  134 (251)
T PLN00141         89 VICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSIL  134 (251)
T ss_pred             EEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            999887421              1344554443  36888887543

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.63  E-value=0.018  Score=48.53  Aligned_cols=83  Identities=19%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEE--ecCh-hhHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVF--TESQ-LEVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~--~~~~-~~~~~-i~~~~~~~g  196 (314)
                      .++++||+|+++  ++|.++++.+...|++++.+.+. ...++..+.+. ..+....+  |-.+ ..++. +.+.....|
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            478999999975  89999998888899998766542 11122233332 23322233  2222 22333 222233334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        84 ~iD~linnAg~   94 (262)
T PRK07984         84 KFDGFVHSIGF   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            69999999973

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.024  Score=47.32  Aligned_cols=84  Identities=20%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGADE-VF--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+..... ++..+.++..+... .+  |-.+ ..+++ +.+.....++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999988999998887542111 11122333344322 22  2222 12222 2222222346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++|+|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.60  E-value=0.023  Score=47.47  Aligned_cols=82  Identities=17%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+..  .++..+.+..++... .+  |-.+ ...+. +.+.....+++
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE--PTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc--hHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            468999999999999999999988999988765321  233334444444322 22  2222 12222 22222223459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++|+|.
T Consensus        87 D~li~~Ag~   95 (253)
T PRK08993         87 DILVNNAGL   95 (253)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.60  E-value=0.065  Score=44.57  Aligned_cols=77  Identities=22%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCCcE
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADE-VF--TESQL-EVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~d~  200 (314)
                      +++|+|++|.+|.+.+..+...|++++.+.+    ++++.+.+ ..++... .+  |-.+. ..++ +.+.....+++|.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   77 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGR----RQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV   77 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899999999999999999889999988875    34444333 2234332 22  22221 2222 2222222235999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ++.++|.
T Consensus        78 vi~~ag~   84 (248)
T PRK10538         78 LVNNAGL   84 (248)
T ss_pred             EEECCCc
Confidence            9999874

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.59  E-value=0.021  Score=51.14  Aligned_cols=77  Identities=13%  Similarity=0.225  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCC-cEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGA-DEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~-~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+++++|+|++|++|.+.+..+...|++++++.+.    +++.. .....+. ...+..+-.+.+.+.+..+   ++|++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~----~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~---~IDiL  249 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSN----SDKITLEINGEDLPVKTLHWQVGQEAALAELLE---KVDIL  249 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhC---CCCEE
Confidence            47899999999999999998888889999888753    33322 2211111 1122222222334544443   49999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      ++++|.
T Consensus       250 InnAGi  255 (406)
T PRK07424        250 IINHGI  255 (406)
T ss_pred             EECCCc
Confidence            999874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.58  E-value=0.018  Score=48.09  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|...++.+...|.+++++.+.....++....++..+... .+  |-.+. ..+. +.......+++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            36899999999999999998888889999888864221111112223333332 22  22221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.+++.
T Consensus        83 d~vi~~a~~   91 (258)
T PRK12429         83 DILVNNAGI   91 (258)
T ss_pred             CEEEECCCC
Confidence            999999974

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.58  E-value=0.017  Score=47.72  Aligned_cols=84  Identities=18%  Similarity=0.255  Sum_probs=49.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecC--hh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTES--QL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~--~~-~~~~-i~~~~~~~g~~  198 (314)
                      .+++++|+|++|.+|..++..+...|++++++.+.....++..+.+...+... .+..+  +. .+.. +++.....+++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            35789999999999999998888889998888764211111122223333322 22222  21 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++|.++|.
T Consensus        86 d~vi~~ag~   94 (239)
T PRK07666         86 DILINNAGI   94 (239)
T ss_pred             cEEEEcCcc
Confidence            999999875

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.56  E-value=0.016  Score=44.88  Aligned_cols=81  Identities=16%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-EecC--h-hhHHH-HHHHhcCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-FTES--Q-LEVKN-VKGLLANLP  196 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~~~~--~-~~~~~-i~~~~~~~g  196 (314)
                      +++||+|+++++|.+.++.+...|+.+++++..+. +.++.    +.+++.+.... +..+  + ...++ +.+.....+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~-~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSE-DSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSC-HHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            47999999999999999888777886666664320 12222    23344554322 2222  1 22222 222221223


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      .+|++|.|+|.
T Consensus        80 ~ld~li~~ag~   90 (167)
T PF00106_consen   80 PLDILINNAGI   90 (167)
T ss_dssp             SESEEEEECSC
T ss_pred             ccccccccccc
Confidence            59999999986

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.024  Score=48.95  Aligned_cols=35  Identities=23%  Similarity=0.147  Sum_probs=31.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            47899999999999999999998899999887754

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.54  E-value=0.19  Score=45.24  Aligned_cols=77  Identities=10%  Similarity=0.070  Sum_probs=51.7

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      --.+++++|.|+ |.+|.+++..+...|+..+.++..   +.++ ...+..++...++..     +++.+...   .+|+
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nR---t~~ra~~La~~~~~~~~~~~-----~~l~~~l~---~aDi  245 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANR---TIEKAQKITSAFRNASAHYL-----SELPQLIK---KADI  245 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHHhcCCeEecH-----HHHHHHhc---cCCE
Confidence            346789999999 999999999999999877766643   3333 344455652222222     23333333   3999


Q ss_pred             EEecCCCccH
Q 021311          201 GFNCVGGNSA  210 (314)
Q Consensus       201 v~d~~g~~~~  210 (314)
                      ||+|++.+..
T Consensus       246 VI~aT~a~~~  255 (414)
T PRK13940        246 IIAAVNVLEY  255 (414)
T ss_pred             EEECcCCCCe
Confidence            9999998654

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.54  E-value=0.015  Score=48.66  Aligned_cols=34  Identities=12%  Similarity=0.068  Sum_probs=29.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++++||+|++|.+|.+.+..+...|++++.+.+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999999999998888889998887753

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.53  E-value=0.02  Score=49.82  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .+++++|+|++|++|..+++.+...|++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r   38 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACR   38 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence            4689999999999999999888888999988875

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.51  E-value=0.019  Score=47.68  Aligned_cols=84  Identities=13%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEEecC--h-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVFTES--Q-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~--~-~~~~~-i~~~~~~~g~~  198 (314)
                      +++++||+|++|.+|..+++.+...|++++.+.+......+..+.++..+.. ..+..+  + ...++ +.+.....+++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999988889999888775321111111222333322 222222  2 12222 22233233359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++|.++|.
T Consensus        82 d~vi~~ag~   90 (250)
T TIGR03206        82 DVLVNNAGW   90 (250)
T ss_pred             CEEEECCCC
Confidence            999999973

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.51  E-value=0.018  Score=48.11  Aligned_cols=84  Identities=19%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .+++++|+|+++.+|..++..+...|++++.+.+......+..+.++..+... .+  |..+ ..+.+ +.+.....+++
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   89 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL   89 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999998888889999888753111111112223334322 22  2222 12222 22232333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |.++.++|.
T Consensus        90 d~vi~~ag~   98 (256)
T PRK06124         90 DILVNNVGA   98 (256)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.51  E-value=0.046  Score=45.23  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=28.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEE-ec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINI-IR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~-~~  157 (314)
                      ++++||+|++|.+|..++..+...|++++.+ .+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r   38 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDI   38 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5789999999999999998888889998887 54

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.51  E-value=0.019  Score=48.27  Aligned_cols=84  Identities=15%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecC--hh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTES--QL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~--~~-~~~~-i~~~~~~~g~~  198 (314)
                      .+++++|+|+++.+|...+..+...|++++++.+.....++..+.++..+... .+..+  +. ..++ +.+.....+++
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            56899999999999999998888889998877643211111122233344332 22222  21 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.|+|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=96.51  E-value=0.044  Score=48.20  Aligned_cols=85  Identities=14%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             CCCCEEEEcCCCcHHHHH--HHHHHHHcCCcEEEEecCCCCcH------------HHHHHHHhCCCcE-EEecC--h-hh
Q 021311          123 NSGDSIVQNGATSIVGQC--IIQIARHRGIHSINIIRDRAGSD------------EAKEKLKGLGADE-VFTES--Q-LE  184 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~--a~~la~~~g~~vi~~~~~~~~~~------------~~~~~~~~lg~~~-~~~~~--~-~~  184 (314)
                      ..++++||+|+++++|++  .++.+ ..|++++++.......+            ...+.+++.|... .+..+  + +.
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            456899999999999999  45555 88999888763221111            1233445666542 33322  2 22


Q ss_pred             HHH-HHHHhcCCCCCcEEEecCCCc
Q 021311          185 VKN-VKGLLANLPEPALGFNCVGGN  208 (314)
Q Consensus       185 ~~~-i~~~~~~~g~~d~v~d~~g~~  208 (314)
                      .++ +.......|++|+++++++..
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence            222 222222334699999999975

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.056  Score=44.72  Aligned_cols=77  Identities=19%  Similarity=0.165  Sum_probs=45.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC-CcEEEecChhhHHHHHHHhcCC-CCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG-ADEVFTESQLEVKNVKGLLANL-PEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~i~~~~~~~-g~~d~v~d  203 (314)
                      ++++|+|++|++|...+..+...|++++++.+    ++++.+.+...+ ....+..+-.+.+.+.+..... ...|.++.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGR----NQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC----CHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            57999999999999988888888999888875    444544443322 1222222211222333322221 13677777


Q ss_pred             cCC
Q 021311          204 CVG  206 (314)
Q Consensus       204 ~~g  206 (314)
                      ++|
T Consensus        78 ~ag   80 (240)
T PRK06101         78 NAG   80 (240)
T ss_pred             cCc
Confidence            776

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.49  E-value=0.058  Score=47.43  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=68.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHh-----------
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLL-----------  192 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~-----------  192 (314)
                      ++|.|.|++|++|..++.+.+..  .+++++++... ..+.-.+.+++++..++.-.++...+.+++..           
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~-n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK-NVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            57999999999999999998765  56888777332 24445567788999887766654333343322           


Q ss_pred             -------cCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEE
Q 021311          193 -------ANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVT  225 (314)
Q Consensus       193 -------~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~  225 (314)
                             ... .+|+|+++.++. ...-.+.+++.|-++.+
T Consensus        81 ~~~~~l~~~~-~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         81 EGLCELAALP-EADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             hHHHHHhcCC-CCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence                   222 389999998874 44667777777766555

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.49  E-value=0.026  Score=45.89  Aligned_cols=98  Identities=24%  Similarity=0.275  Sum_probs=59.7

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHH----HhCCCcE--EEecChhhHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKL----KGLGADE--VFTESQLEVKNVK  189 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~----~~lg~~~--~~~~~~~~~~~i~  189 (314)
                      ....++++++||-+|+  +.|..+..+++..+.  +++++-.    +++..+.+    +..|...  ++..+...     
T Consensus        70 ~~l~~~~g~~VLdIG~--GsG~~t~~la~~~~~~~~V~~vE~----~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-----  138 (212)
T PRK13942         70 ELLDLKEGMKVLEIGT--GSGYHAAVVAEIVGKSGKVVTIER----IPELAEKAKKTLKKLGYDNVEVIVGDGTL-----  138 (212)
T ss_pred             HHcCCCCcCEEEEECC--cccHHHHHHHHhcCCCCEEEEEeC----CHHHHHHHHHHHHHcCCCCeEEEECCccc-----
Confidence            4467899999999997  347777778887653  5555553    44444444    3344332  22222110     


Q ss_pred             HHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ..... +.||+|+-....... ....+.|+++|+++..-
T Consensus       139 ~~~~~-~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        139 GYEEN-APYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCCcC-CCcCEEEECCCcccchHHHHHhhCCCcEEEEEE
Confidence            01111 259999765544433 67889999999988764

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.014  Score=49.36  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|.+|..+++.+...|++++.+.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~   40 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN   40 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            36899999999999999999999899998888753

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.47  E-value=0.03  Score=43.89  Aligned_cols=80  Identities=25%  Similarity=0.378  Sum_probs=56.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC--cE-EEecC---hhhHHH-HHHHhcCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA--DE-VFTES---QLEVKN-VKGLLANLPE  197 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~-~~~~~---~~~~~~-i~~~~~~~g~  197 (314)
                      .+.++|+|+++++|.+..+.+...|+++.+....   +....+.++.++.  +| .|..+   ..+++. +.+.....|.
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~---~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~   90 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLD---SAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGT   90 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecc---hhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence            3667899999999999999999999999877754   4555566677766  33 23322   223333 4444444456


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      ++++++|+|-
T Consensus        91 psvlVncAGI  100 (256)
T KOG1200|consen   91 PSVLVNCAGI  100 (256)
T ss_pred             CcEEEEcCcc
Confidence            9999999995

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.47  E-value=0.024  Score=48.93  Aligned_cols=83  Identities=19%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-cHHHHHHHHhCCCcEEE---ecCh-hhHHHHHH-HhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-SDEAKEKLKGLGADEVF---TESQ-LEVKNVKG-LLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~~~---~~~~-~~~~~i~~-~~~~~g~  197 (314)
                      .+++++|+|+++++|...++.+...|++++........ .++..+.++..|.....   |-.+ ...+++.+ ... .|+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~-~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG-LGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH-hCC
Confidence            46899999999999999998888889998876543110 11222333344433222   2222 12223222 222 346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.46  E-value=0.012  Score=48.84  Aligned_cols=86  Identities=12%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc--EEE--ecC---hhhHHHH-HHHhc
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD--EVF--TES---QLEVKNV-KGLLA  193 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~--~~~---~~~~~~i-~~~~~  193 (314)
                      ..++++++|+|++|.+|...++.+...|++++++.+.....++-.+.++..+..  .++  |.+   ......+ .....
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            457899999999999999999888888999988875321111112233333322  122  222   1222222 22222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+++|.++.+++.
T Consensus        89 ~~~~id~vi~~Ag~  102 (247)
T PRK08945         89 QFGRLDGVLHNAGL  102 (247)
T ss_pred             HhCCCCEEEECCcc
Confidence            22359999998874

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.45  E-value=0.031  Score=46.93  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|+++++|.+++..+...|++++.+.+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~   40 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN   40 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            4789999999999999999988899999887764

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.026  Score=47.84  Aligned_cols=84  Identities=19%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      +.++++|+|++|.+|..+++.+...|++++++.+......+..+.+...+... .+  |..+. .... +.+.....+++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            34689999999999999998888889998887753111111111223334332 22  22221 1222 22221222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++|.++|.
T Consensus        89 d~vi~~Ag~   97 (274)
T PRK07775         89 EVLVSGAGD   97 (274)
T ss_pred             CEEEECCCc
Confidence            999999985

>PRK09186 flagellin modification protein A; Provisional

Probab=96.44  E-value=0.023  Score=47.45  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|.+|...+..+...|++++.+.+.
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~   37 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADID   37 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            47899999999999999999998899999888753

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.42  E-value=0.027  Score=47.08  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++.+|..++..+...|++++.+.+.    .++.+    .++..+... .+  |..+. ...+ +......
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~   85 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN----ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999888899998887753    33322    223333322 22  22222 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|+++.|+|.
T Consensus        86 ~~~~d~li~~ag~   98 (255)
T PRK06113         86 LGKVDILVNNAGG   98 (255)
T ss_pred             cCCCCEEEECCCC
Confidence            3459999999984

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.029  Score=47.47  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKT   39 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            46799999999999999999888889999888764

>PRK12743 oxidoreductase; Provisional

Probab=96.41  E-value=0.024  Score=47.44  Aligned_cols=83  Identities=16%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      ++++||+|+++.+|..+++.+...|++++.+.+.+... ++..+.++..+... .+  |-.+. .++. +.+.....+++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999998876432111 11123334455432 22  22221 2222 22222223359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        82 d~li~~ag~   90 (256)
T PRK12743         82 DVLVNNAGA   90 (256)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.022  Score=47.56  Aligned_cols=76  Identities=18%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EE--EecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EV--FTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~--~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|..+++.+...|++++.+.+.    .++    ...+.. ..  .|..+. ..++ +.......+++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~----~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   76 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR----APE----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL   76 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC----hhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999888899999888753    222    111211 12  222221 2222 22222223459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++|.|+|.
T Consensus        77 d~vi~~ag~   85 (252)
T PRK07856         77 DVLVNNAGG   85 (252)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.40  E-value=0.063  Score=44.63  Aligned_cols=75  Identities=21%  Similarity=0.185  Sum_probs=47.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|...+..+...|++++.+.+.    .     ....+.. ..+  |-.+. ..++ +.+.....+++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~----~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA----F-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPL   77 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc----h-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999888889999888753    2     1112221 122  22221 2222 22222223459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.|+|.
T Consensus        78 d~vi~~ag~   86 (252)
T PRK08220         78 DVLVNAAGI   86 (252)
T ss_pred             CEEEECCCc
Confidence            999999885

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.023  Score=47.64  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=49.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .+++++|+|++|.+|.++++.+...|++++.+.+... ..+..+.+...+... .+  |..+. .++. +.+.....+.+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999988889999887775311 111112222233322 22  22221 2222 22222223459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        84 d~vi~~ag~   92 (263)
T PRK08226         84 DILVNNAGV   92 (263)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.39  E-value=0.044  Score=46.21  Aligned_cols=96  Identities=19%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             hcccccHHHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC
Q 021311          103 ATIIVNPLTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~  181 (314)
                      ...|+++...+..+.. .++ -.|++++|.|.+..+|.-+.+++...|++|+++-..   +.                  
T Consensus       137 ~~~PcTp~av~~ll~~-~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---T~------------------  194 (285)
T PRK10792        137 LLRPCTPRGIMTLLER-YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---TK------------------  194 (285)
T ss_pred             CCCCCCHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---CC------------------
Confidence            3567777778877766 443 369999999998889999999999999988766521   10                  


Q ss_pred             hhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       182 ~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                           ++.+.+.   ..|+++.++|.+.+- --+.++++..++.+|..
T Consensus       195 -----~l~~~~~---~ADIvi~avG~p~~v-~~~~vk~gavVIDvGin  233 (285)
T PRK10792        195 -----NLRHHVR---NADLLVVAVGKPGFI-PGEWIKPGAIVIDVGIN  233 (285)
T ss_pred             -----CHHHHHh---hCCEEEEcCCCcccc-cHHHcCCCcEEEEcccc
Confidence                 1222222   399999999987752 12788999999999844

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.026  Score=47.66  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecC--h-hhHHH-HHHHhcCCCCCcE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTES--Q-LEVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~--~-~~~~~-i~~~~~~~g~~d~  200 (314)
                      +++||+|++|.+|...+..+...|++++.+.+.....++....++..+.+. .+..+  + ...+. +.......+++|+
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            378999999999999998888889999888753211111122233334332 22222  1 12222 2222222235999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ++.++|.
T Consensus        81 lI~~ag~   87 (270)
T PRK05650         81 IVNNAGV   87 (270)
T ss_pred             EEECCCC
Confidence            9999985

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.38  E-value=0.039  Score=46.72  Aligned_cols=99  Identities=15%  Similarity=0.103  Sum_probs=58.5

Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhC---CCcEEEecChhhHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGL---GADEVFTESQLEVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~l---g~~~~~~~~~~~~~~i~~  190 (314)
                      ++.+......+++++|+|+ |++|.+++..+...|++++++.+    +.++. +.++.+   +........     .   
T Consensus       107 ~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R----~~~~~~~la~~~~~~~~~~~~~~~-----~---  173 (270)
T TIGR00507       107 DLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANR----TVSKAEELAERFQRYGEIQAFSMD-----E---  173 (270)
T ss_pred             HHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHhhcCceEEechh-----h---
Confidence            3433233456789999999 89999999888888987666654    33332 333333   221222111     1   


Q ss_pred             HhcCCCCCcEEEecCCCccH------HHHHHhcccCCEEEEEcC
Q 021311          191 LLANLPEPALGFNCVGGNSA------SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~~------~~~~~~l~~~G~~v~~g~  228 (314)
                      ....  .+|+|++|++....      ......++++..++.+..
T Consensus       174 ~~~~--~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       174 LPLH--RVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             hccc--CccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            1111  49999999986432      112455777777777763

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.37  E-value=0.04  Score=46.74  Aligned_cols=96  Identities=17%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             ccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh
Q 021311          105 IIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE  184 (314)
Q Consensus       105 ~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~  184 (314)
                      .+++.......+....---.|++++|.|+++.+|...++++...|+++.++-+    ...                    
T Consensus       139 ~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~----~t~--------------------  194 (283)
T PRK14192        139 GSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS----RTQ--------------------  194 (283)
T ss_pred             cCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC----Cch--------------------
Confidence            34444333333433222357899999999666999999999999995544432    110                    


Q ss_pred             HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          185 VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       185 ~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                        .+.+.+.   ++|++++++|.+.. --.+.++++..++.+|...
T Consensus       195 --~L~~~~~---~aDIvI~AtG~~~~-v~~~~lk~gavViDvg~n~  234 (283)
T PRK14192        195 --NLPELVK---QADIIVGAVGKPEL-IKKDWIKQGAVVVDAGFHP  234 (283)
T ss_pred             --hHHHHhc---cCCEEEEccCCCCc-CCHHHcCCCCEEEEEEEee
Confidence              1111121   49999999987553 2236689999999988443

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.36  E-value=0.037  Score=46.68  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+....---.|++++|.|.+..+|.-+..++...|++|+.+-..   +                    
T Consensus       136 ~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---t--------------------  192 (285)
T PRK14189        136 LFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---T--------------------  192 (285)
T ss_pred             CCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---C--------------------
Confidence            35677777777777653223479999999998888999999999999998765421   1                    


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .   ++.+.+.   ..|+++-++|.+.+-. -+.++++..++.+|...
T Consensus       193 ~---~l~~~~~---~ADIVV~avG~~~~i~-~~~ik~gavVIDVGin~  233 (285)
T PRK14189        193 R---DLAAHTR---QADIVVAAVGKRNVLT-ADMVKPGATVIDVGMNR  233 (285)
T ss_pred             C---CHHHHhh---hCCEEEEcCCCcCccC-HHHcCCCCEEEEccccc
Confidence            0   1222222   3999999999876522 28899999999999543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.041  Score=46.62  Aligned_cols=148  Identities=17%  Similarity=0.230  Sum_probs=85.4

Q ss_pred             CCCCCCEEeeCCCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHH--HHHHHHHhhcCCCCCEEEEcCCCcHHHH
Q 021311           62 RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLT--ALRMLEDFTTLNSGDSIVQNGATSIVGQ  139 (314)
Q Consensus        62 ~~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t--a~~~l~~~~~~~~~~~vlI~g~~g~~G~  139 (314)
                      ..+.|++....+    +|.+|........+++.+++.+-    ...-+.|  ++.++.+  .+++++++|=.|+++  |.
T Consensus       108 P~rig~~f~I~P----sw~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lcL~~Le~--~~~~g~~vlDvGcGS--GI  175 (300)
T COG2264         108 PVRIGERFVIVP----SWREYPEPSDELNIELDPGLAFG----TGTHPTTSLCLEALEK--LLKKGKTVLDVGCGS--GI  175 (300)
T ss_pred             cEEeeeeEEECC----CCccCCCCCCceEEEEccccccC----CCCChhHHHHHHHHHH--hhcCCCEEEEecCCh--hH
Confidence            356788888776    56665443346778888887442    1222233  3444443  256999999999833  66


Q ss_pred             HHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCcc----HH
Q 021311          140 CIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS----AS  211 (314)
Q Consensus       140 ~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~----~~  211 (314)
                      +++ .+..+|+..+..+|-   ++...+.++    ..+...........  ......+  +.+|+|+-+.=...    ++
T Consensus       176 LaI-Aa~kLGA~~v~g~Di---Dp~AV~aa~eNa~~N~v~~~~~~~~~~--~~~~~~~--~~~DvIVANILA~vl~~La~  247 (300)
T COG2264         176 LAI-AAAKLGAKKVVGVDI---DPQAVEAARENARLNGVELLVQAKGFL--LLEVPEN--GPFDVIVANILAEVLVELAP  247 (300)
T ss_pred             HHH-HHHHcCCceEEEecC---CHHHHHHHHHHHHHcCCchhhhccccc--chhhccc--CcccEEEehhhHHHHHHHHH
Confidence            666 445668986666664   555544443    22322100000000  0111111  25999987663322    37


Q ss_pred             HHHHhcccCCEEEEEcCC
Q 021311          212 KVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~  229 (314)
                      ...+.++|+|++++.|-.
T Consensus       248 ~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         248 DIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             HHHHHcCCCceEEEEeeh
Confidence            788899999999998844

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.36  E-value=0.25  Score=40.25  Aligned_cols=116  Identities=7%  Similarity=-0.099  Sum_probs=68.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+.+|||.|+ |.++.-=+..+...|+++.+++..  -+++-.+.+ .-|.-..+ .+......+      . ++++||-
T Consensus        24 ~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~--i~~el~~l~-~~~~i~~~-~r~~~~~dl------~-g~~LVia   91 (223)
T PRK05562         24 NKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKK--FSKEFLDLK-KYGNLKLI-KGNYDKEFI------K-DKHLIVI   91 (223)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC--CCHHHHHHH-hCCCEEEE-eCCCChHHh------C-CCcEEEE
Confidence            5789999999 999988788888889998877743  123322222 22322222 222221222      1 4999999


Q ss_pred             cCCCccHHHHH-HhcccCCEEEEEcCCCCCCcccccccceec-ceEEEEEe
Q 021311          204 CVGGNSASKVL-KFLSQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGFW  252 (314)
Q Consensus       204 ~~g~~~~~~~~-~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~  252 (314)
                      |++.+..+..+ ...+..+.+|....... ..++..+.++.+ ++++.-+.
T Consensus        92 ATdD~~vN~~I~~~a~~~~~lvn~vd~p~-~~dFi~PAiv~rg~l~IaIST  141 (223)
T PRK05562         92 ATDDEKLNNKIRKHCDRLYKLYIDCSDYK-KGLCIIPYQRSTKNFVFALNT  141 (223)
T ss_pred             CCCCHHHHHHHHHHHHHcCCeEEEcCCcc-cCeEEeeeEEecCCEEEEEEC
Confidence            99988885544 44455577776653332 234444554444 46654443

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.032  Score=47.21  Aligned_cols=78  Identities=22%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCc-EE--EecChh-hHHH-HHHHhcCCCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGAD-EV--FTESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~-~~--~~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      +++||+|++|.+|..+++.+...|.+++++.+    +.++.+.++. .+.. ..  .|..+. ..++ +.+.....+++|
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVR----RPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRID   78 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999888888999988885    4444444432 2322 11  222222 1222 222222233599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++|.++|.
T Consensus        79 ~vi~~ag~   86 (276)
T PRK06482         79 VVVSNAGY   86 (276)
T ss_pred             EEEECCCC
Confidence            99999985

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.031  Score=46.74  Aligned_cols=79  Identities=14%  Similarity=0.075  Sum_probs=47.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCC--cEEE--ecChh-hHH-HHHHHhcCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGA--DEVF--TESQL-EVK-NVKGLLANLPE  197 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~--~~~~--~~~~~-~~~-~i~~~~~~~g~  197 (314)
                      ++++||+|++|.+|...+..+...|++++++.+.    .++.+ ..+.+..  -..+  |-.+. .+. .+.+.....++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDID----AAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGP   77 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999998888889998888753    33322 2233321  1222  22221 121 12222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        78 ~d~vi~~ag~   87 (257)
T PRK07074         78 VDVLVANAGA   87 (257)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.32  E-value=0.009  Score=54.59  Aligned_cols=39  Identities=8%  Similarity=0.195  Sum_probs=34.9

Q ss_pred             hhcCCCCCEEE----EcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          119 FTTLNSGDSIV----QNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       119 ~~~~~~~~~vl----I~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +.++++|+++|    ++|++|++|.+++|+++..|++++.+..
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~   70 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANND   70 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCc
Confidence            46678999998    9998899999999999999999998774

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.31  E-value=0.028  Score=43.20  Aligned_cols=97  Identities=16%  Similarity=0.284  Sum_probs=60.1

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ..+|+++...+..+....---.|++++|.|.+..+|.-+..++...|+++..+-..   ++                   
T Consensus        14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~---T~-------------------   71 (160)
T PF02882_consen   14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK---TK-------------------   71 (160)
T ss_dssp             SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT---SS-------------------
T ss_pred             CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC---CC-------------------
Confidence            45566666666666663334688999999999999999999999999999775521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                          ++.+.+.   ..|+|+.++|.+.+- -.++++++..++.+|..
T Consensus        72 ----~l~~~~~---~ADIVVsa~G~~~~i-~~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   72 ----NLQEITR---RADIVVSAVGKPNLI-KADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             ----SHHHHHT---TSSEEEE-SSSTT-B--GGGS-TTEEEEE--CE
T ss_pred             ----cccceee---eccEEeeeecccccc-ccccccCCcEEEecCCc
Confidence                1222222   399999999987651 13578999999988854

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=96.29  E-value=0.012  Score=50.07  Aligned_cols=83  Identities=14%  Similarity=0.198  Sum_probs=54.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc--------------------HHHHHHHHhCCCcEEEe-cCh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS--------------------DEAKEKLKGLGADEVFT-ESQ  182 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~--------------------~~~~~~~~~lg~~~~~~-~~~  182 (314)
                      .+.+|||.|+ |++|.=++|.+.+.|+..+.+++.+.-.                    ......++++....-++ |.+
T Consensus        65 k~s~VLVVGa-GGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~  143 (427)
T KOG2017|consen   65 KNSSVLVVGA-GGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNE  143 (427)
T ss_pred             CCccEEEEcc-CCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechh
Confidence            4589999999 9999999999999999999888654311                    12223334444432222 222


Q ss_pred             h-hHHHHHHHhcCCCCCcEEEecCCCccH
Q 021311          183 L-EVKNVKGLLANLPEPALGFNCVGGNSA  210 (314)
Q Consensus       183 ~-~~~~i~~~~~~~g~~d~v~d~~g~~~~  210 (314)
                      . .......+..+   +|+|+||+.+..+
T Consensus       144 ~L~~sNa~~Ii~~---YdvVlDCTDN~~T  169 (427)
T KOG2017|consen  144 FLSSSNAFDIIKQ---YDVVLDCTDNVPT  169 (427)
T ss_pred             hccchhHHHHhhc---cceEEEcCCCccc
Confidence            2 12334555544   9999999998543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.29  E-value=0.073  Score=44.93  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=70.0

Q ss_pred             hcccccHHHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC
Q 021311          103 ATIIVNPLTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~  181 (314)
                      +..|+++...+..+.. -++ -.|++|+|.|.+..+|.-++.++...|++|.++-.    ...                 
T Consensus       135 ~~~PcTp~avi~lL~~-~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs----~t~-----------------  192 (285)
T PRK14191        135 GFVPATPMGVMRLLKH-YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI----LTK-----------------  192 (285)
T ss_pred             CCCCCcHHHHHHHHHH-hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC----CcH-----------------
Confidence            4567777777777765 344 36999999999779999999999999999876542    111                 


Q ss_pred             hhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       182 ~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                           ++.+.+.   ..|+++-++|.+.+-. -+.+++|..++.+|...
T Consensus       193 -----~l~~~~~---~ADIvV~AvG~p~~i~-~~~vk~GavVIDvGi~~  232 (285)
T PRK14191        193 -----DLSFYTQ---NADIVCVGVGKPDLIK-ASMVKKGAVVVDIGINR  232 (285)
T ss_pred             -----HHHHHHH---hCCEEEEecCCCCcCC-HHHcCCCcEEEEeeccc
Confidence                 1122222   3999999999877621 35679999999999543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.29  E-value=0.04  Score=44.36  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      .+.+|+|.|+ |++|..+++.+...|...+.+++.+
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCC
Confidence            4589999999 9999999999999999888888764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07069 short chain dehydrogenase; Validated

Probab=96.27  E-value=0.044  Score=45.50  Aligned_cols=31  Identities=16%  Similarity=0.169  Sum_probs=27.6

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++|+|++|.+|...++.+...|++++.+.+.
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~   32 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN   32 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            7999999999999998888889999888754

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.26  E-value=0.043  Score=45.40  Aligned_cols=80  Identities=25%  Similarity=0.196  Sum_probs=48.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcE-EEec--Ch-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADE-VFTE--SQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~-~~~~--~~-~~~~~-i~~~~~~~g~  197 (314)
                      +++++||+|++|.+|..++..+...|+.++...+    +.++.+. ...++... .+..  .+ ...++ +.+.....++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGT----RVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEG   80 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999888888987766553    3333332 23344322 2222  22 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.|+|.
T Consensus        81 id~vi~~ag~   90 (245)
T PRK12936         81 VDILVNNAGI   90 (245)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.25  E-value=0.04  Score=48.52  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=38.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       111 ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      |||.-++....++. ++|||+|++|-+|..++..+...|.+|+++.+.
T Consensus         2 ~~~~~~~~~~~~~~-~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~   48 (348)
T PRK15181          2 TAYEELRTKLVLAP-KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF   48 (348)
T ss_pred             chhhhhhhcccccC-CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57777766554544 789999999999999999998889999888754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.24  E-value=0.033  Score=46.54  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=49.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADE-VF--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|...++.+...|++++.+.+    +.++.+. ...++... .+  |-.+ ...+. +.+.....++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADI----KPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGG   80 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC----CHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            3679999999999999999999889999888875    3333333 23333221 22  2222 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        81 id~li~~ag~   90 (257)
T PRK07067         81 IDILFNNAAL   90 (257)
T ss_pred             CCEEEECCCc
Confidence            9999999874

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.036  Score=46.42  Aligned_cols=81  Identities=20%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.   +.++.+    .+...+... .+  |..+. .... +.+....
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNR---SRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46799999999999999998888899999877653   222221    222334332 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|+++.|+|.
T Consensus        85 ~~~iD~vi~~ag~   97 (258)
T PRK09134         85 LGPITLLVNNASL   97 (258)
T ss_pred             cCCCCEEEECCcC
Confidence            2359999999984

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.22  E-value=0.034  Score=49.02  Aligned_cols=80  Identities=16%  Similarity=0.237  Sum_probs=49.6

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC--CCc-EEEecChhhHHHHHHHhcCCCCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL--GAD-EVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~-~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      -..+.+|||+|++|.+|..+++.+...|.+|+++.+.   .+........+  +.. ..+..+-...+.+.+...   ++
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~   80 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRD---PAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVK---GC   80 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---hHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHc---CC
Confidence            3467899999999999999999888889999988753   11111122222  111 122222222234444443   38


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+||.+++.
T Consensus        81 d~Vih~A~~   89 (353)
T PLN02896         81 DGVFHVAAS   89 (353)
T ss_pred             CEEEECCcc
Confidence            999999874

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.21  E-value=0.044  Score=47.62  Aligned_cols=81  Identities=17%  Similarity=0.235  Sum_probs=48.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC---cEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA---DEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .++++||+|++|.+|..++..+...|.+++++.+...............+.   ...+..+-.+.+.+.+...   ++|+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---~~d~   80 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID---GCET   80 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc---CCCE
Confidence            478999999999999999998888899988777543211111111111111   1222222112233444443   3999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ||.+++.
T Consensus        81 vih~A~~   87 (325)
T PLN02989         81 VFHTASP   87 (325)
T ss_pred             EEEeCCC
Confidence            9999974

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.045  Score=45.81  Aligned_cols=84  Identities=23%  Similarity=0.350  Sum_probs=49.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|..+++.+...|++++.+.+......+..+    .++..+... .+  |..+. ..++ +.+....
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            46899999999999999999988899997766543221222222    222334332 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|+++.++|.
T Consensus        87 ~~~id~li~~ag~   99 (257)
T PRK12744         87 FGRPDIAINTVGK   99 (257)
T ss_pred             hCCCCEEEECCcc
Confidence            3359999999985

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.17  E-value=0.041  Score=46.12  Aligned_cols=84  Identities=14%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++.+|...++.+...|++++.+.+..... ....+.++..+... .+  |-.+. .+.+ +.+.....++
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   85 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGT   85 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999988776531101 11122233334332 22  22222 2222 2223333346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        86 id~lv~~ag~   95 (261)
T PRK08936         86 LDVMINNAGI   95 (261)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK09135 pteridine reductase; Provisional

Probab=96.16  E-value=0.047  Score=45.22  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            45799999999999999998888889999988854

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.15  E-value=0.078  Score=39.83  Aligned_cols=96  Identities=9%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             cccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh
Q 021311          104 TIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL  183 (314)
Q Consensus       104 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  183 (314)
                      ++|+.+...+..+....---.|++|+|+|.+..+|.-++.++...|+++..+-..   +.                    
T Consensus         7 ~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~---t~--------------------   63 (140)
T cd05212           7 FVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK---TI--------------------   63 (140)
T ss_pred             ccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC---Cc--------------------
Confidence            4555555555556553223478999999999999999999999999998877632   11                    


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                         ++.+...   ..|+++-++|.... ---+++++|..++.+|..
T Consensus        64 ---~l~~~v~---~ADIVvsAtg~~~~-i~~~~ikpGa~Vidvg~~  102 (140)
T cd05212          64 ---QLQSKVH---DADVVVVGSPKPEK-VPTEWIKPGATVINCSPT  102 (140)
T ss_pred             ---CHHHHHh---hCCEEEEecCCCCc-cCHHHcCCCCEEEEcCCC
Confidence               0111111   39999999998743 224679999999988743

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.15  E-value=0.06  Score=44.50  Aligned_cols=84  Identities=17%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcH-HHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD-EAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~-~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|...+..+...|++++++.+...... ...+.++..+... .+  |-.+. .... +.+.....++
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4579999999999999999999888999977775421111 1112223333332 22  22221 1222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|.++.++|.
T Consensus        84 id~vi~~ag~   93 (248)
T PRK05557         84 VDILVNNAGI   93 (248)
T ss_pred             CCEEEECCCc
Confidence            9999999975

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.15  E-value=0.054  Score=40.50  Aligned_cols=98  Identities=21%  Similarity=0.289  Sum_probs=56.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc--------------------HHHHHHHHhCCCc-EEEecChh
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS--------------------DEAKEKLKGLGAD-EVFTESQL  183 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~--------------------~~~~~~~~~lg~~-~~~~~~~~  183 (314)
                      +.+|+|.|+ |++|..++..+...|...+.++|.+.-.                    +.-.+.++++... .+......
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            478999999 9999999988888899999888765411                    1112233333322 22222221


Q ss_pred             h-HHHHHHHhcCCCCCcEEEecCCCccHH-HHHHhcccCCEEEEE
Q 021311          184 E-VKNVKGLLANLPEPALGFNCVGGNSAS-KVLKFLSQGGTMVTY  226 (314)
Q Consensus       184 ~-~~~i~~~~~~~g~~d~v~d~~g~~~~~-~~~~~l~~~G~~v~~  226 (314)
                      . .+.+.++..   ++|+||+|..+.... ...+..+..+.-+..
T Consensus        81 ~~~~~~~~~~~---~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~  122 (135)
T PF00899_consen   81 IDEENIEELLK---DYDIVIDCVDSLAARLLLNEICREYGIPFID  122 (135)
T ss_dssp             CSHHHHHHHHH---TSSEEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred             ccccccccccc---CCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence            1 233444443   399999999886553 333444444443333

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02415 23BDH acetoin reductases

Probab=96.12  E-value=0.044  Score=45.66  Aligned_cols=82  Identities=12%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCCCcE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQ-LEVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~~d~  200 (314)
                      ++++|+|++|.+|...++.+...|++++.+.+.....++....+...+... .+  |-.+ ..+++ +.......+.+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            479999999999999998888999998888753111111112223334322 22  2222 22222 2223223335999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ++.++|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9999985

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.12  E-value=0.11  Score=42.81  Aligned_cols=103  Identities=12%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH--------------------HHHHHhCCCcEEEecChhh
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA--------------------KEKLKGLGADEVFTESQLE  184 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~--------------------~~~~~~lg~~~~~~~~~~~  184 (314)
                      +.+|+|.|. |++|..++..+.+.|...+.++|.+.-...+                    .+.++++..+.-+...+..
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~   89 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF   89 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence            478999999 9999999999999999999888765422221                    1222333332222211111


Q ss_pred             --HHHHHHHhcCCCCCcEEEecCCCccHH-HHHHh-cccCCEEEEEcCCC
Q 021311          185 --VKNVKGLLANLPEPALGFNCVGGNSAS-KVLKF-LSQGGTMVTYGGMS  230 (314)
Q Consensus       185 --~~~i~~~~~~~g~~d~v~d~~g~~~~~-~~~~~-l~~~G~~v~~g~~~  230 (314)
                        .+.+..+...  ++|+|+||....... .+.+. .+.+=.++..++..
T Consensus        90 i~~~~~~~l~~~--~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g  137 (231)
T cd00755          90 LTPDNSEDLLGG--DPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG  137 (231)
T ss_pred             cCHhHHHHHhcC--CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence              1233333332  499999999875542 23333 34444555555333

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.11  E-value=0.073  Score=45.29  Aligned_cols=96  Identities=21%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+....---.|++|.|+|.++.+|.-.+.++...|++++++-+.   +.                   
T Consensus       137 ~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~---t~-------------------  194 (301)
T PRK14194        137 VLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSR---ST-------------------  194 (301)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCC---CC-------------------
Confidence            45677777777777663333579999999998899999999999999999877532   11                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~  229 (314)
                       +   +.+.+.   ..|+|+-++|.+.. ...  .+++|..+|.+|..
T Consensus       195 -~---l~e~~~---~ADIVIsavg~~~~v~~~--~ik~GaiVIDvgin  233 (301)
T PRK14194        195 -D---AKALCR---QADIVVAAVGRPRLIDAD--WLKPGAVVIDVGIN  233 (301)
T ss_pred             -C---HHHHHh---cCCEEEEecCChhcccHh--hccCCcEEEEeccc
Confidence             1   222222   39999999998754 322  38999999999844

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.11  E-value=0.063  Score=39.12  Aligned_cols=100  Identities=22%  Similarity=0.255  Sum_probs=59.9

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCc--EEEecChhhHHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGAD--EVFTESQLEVKNVKGL  191 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~--~~~~~~~~~~~~i~~~  191 (314)
                      ....+.++++++-.|+ |. |..+..+++..+...+..++.   ++...+.+    +.++..  .++..+-..  .... 
T Consensus        13 ~~~~~~~~~~vldlG~-G~-G~~~~~l~~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~-   84 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGA-GS-GSITIEAARLVPNGRVYAIER---NPEALRLIERNARRFGVSNIVIVEGDAPE--ALED-   84 (124)
T ss_pred             HHcCCCCCCEEEEeCC-CC-CHHHHHHHHHCCCceEEEEcC---CHHHHHHHHHHHHHhCCCceEEEeccccc--cChh-
Confidence            3356778889999998 44 888888998875434444443   55555544    334432  222221111  0111 


Q ss_pred             hcCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          192 LANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      ..+  ++|+|+...+...    +..+.+.|+++|+++...
T Consensus        85 ~~~--~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLP--EPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcC--CCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            112  5999997654433    478889999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.10  E-value=0.074  Score=45.28  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=69.4

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ..+|+++...+..+....---.|++|+|+|.++.+|.-++.++...|+++.++-..   +.                   
T Consensus       136 ~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~r---T~-------------------  193 (296)
T PRK14188        136 ALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSR---TR-------------------  193 (296)
T ss_pred             CCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCC---CC-------------------
Confidence            45677777777777653223579999999988999999999999999988877321   11                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~  230 (314)
                       .   +.+.+.   ..|+|+-|+|.+.. ..  .++++|..++.+|...
T Consensus       194 -~---l~e~~~---~ADIVIsavg~~~~v~~--~~lk~GavVIDvGin~  233 (296)
T PRK14188        194 -D---LPAVCR---RADILVAAVGRPEMVKG--DWIKPGATVIDVGINR  233 (296)
T ss_pred             -C---HHHHHh---cCCEEEEecCChhhcch--heecCCCEEEEcCCcc
Confidence             0   111222   39999999998764 22  2389999999998543

>PLN02240 UDP-glucose 4-epimerase

Probab=96.10  E-value=0.054  Score=47.62  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCc-EEEecChhhHHHHHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGAD-EVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~-~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      +++|||+|++|.+|..+++.+...|.+++++.+...........+..    .+.. ..+..+-.+.+.+....... ++|
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-~~d   83 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST-RFD   83 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC-CCC
Confidence            57899999999999999988888899888876432112222222221    1111 12212212223444443333 399


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +|++|++.
T Consensus        84 ~vih~a~~   91 (352)
T PLN02240         84 AVIHFAGL   91 (352)
T ss_pred             EEEEcccc
Confidence            99999874

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.10  E-value=0.052  Score=46.53  Aligned_cols=80  Identities=19%  Similarity=0.346  Sum_probs=54.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc----EEEecChhhHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD----EVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~----~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      .+..|+|+||+|-+|.+.+..+...|.+|.+++|... .+++.+.++++...    .++..+-.....+.+...   +.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~-~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~---gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPE-DEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID---GCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcc-hhhhHHHHHhcccCcccceEEeccccccchHHHHHh---CCC
Confidence            5789999999999999999999999999999998753 34444566666522    222222112223333333   388


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      .||=++..
T Consensus        81 gVfH~Asp   88 (327)
T KOG1502|consen   81 GVFHTASP   88 (327)
T ss_pred             EEEEeCcc
Confidence            88877764

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.088  Score=42.12  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=40.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      ++||+|+++++|.+++..+... .+++.+.+..    .          ....|-.+.  +.+++.....+++|+++.++|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~----~----------~~~~D~~~~--~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSS----G----------DVQVDITDP--ASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCC----C----------ceEecCCCh--HHHHHHHHhcCCCCEEEECCC
Confidence            6899999999999888776665 7777776431    1          122333322  223232222335999999998


Q ss_pred             C
Q 021311          207 G  207 (314)
Q Consensus       207 ~  207 (314)
                      .
T Consensus        65 ~   65 (199)
T PRK07578         65 K   65 (199)
T ss_pred             C
Confidence            4

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.09  E-value=0.046  Score=45.21  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +.+++||+|++|.+|..++..+...|.+++++++.
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~   39 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRS   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            35799999999999999999998899998776754

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.034  Score=46.19  Aligned_cols=79  Identities=18%  Similarity=0.106  Sum_probs=47.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhC--CCc-EEE--ecChh-hHHH-HHHHhc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGL--GAD-EVF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~l--g~~-~~~--~~~~~-~~~~-i~~~~~  193 (314)
                      +++++|+|++|++|...++.+...|++++.+.+.    .++.+.+    ...  +.. +.+  |..+. ...+ +.+...
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   77 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARR----TDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD   77 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5789999999999999998888889998888753    3333222    111  211 222  33322 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+++|+++.++|.
T Consensus        78 ~~~~id~vi~~ag~   91 (248)
T PRK08251         78 ELGGLDRVIVNAGI   91 (248)
T ss_pred             HcCCCCEEEECCCc
Confidence            33359999999973

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.08  E-value=0.091  Score=41.10  Aligned_cols=98  Identities=27%  Similarity=0.311  Sum_probs=63.0

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHH----HhCCCcEEEecChhhHHHHHHHhcC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKL----KGLGADEVFTESQLEVKNVKGLLAN  194 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~~~~~~~~i~~~~~~  194 (314)
                      .++++|+.++=+|+.  .|..++++++.. ..+++++-+    ++++.+..    .+||.+.+..-..+-.+.+.    +
T Consensus        30 L~~~~g~~l~DIGaG--tGsi~iE~a~~~p~~~v~AIe~----~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~----~   99 (187)
T COG2242          30 LRPRPGDRLWDIGAG--TGSITIEWALAGPSGRVIAIER----DEEALELIERNAARFGVDNLEVVEGDAPEALP----D   99 (187)
T ss_pred             hCCCCCCEEEEeCCC--ccHHHHHHHHhCCCceEEEEec----CHHHHHHHHHHHHHhCCCcEEEEeccchHhhc----C
Confidence            678999999988883  366777777433 357777774    55665555    45776643322222122222    2


Q ss_pred             CCCCcEEEecCCCcc---HHHHHHhcccCCEEEEEc
Q 021311          195 LPEPALGFNCVGGNS---ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~---~~~~~~~l~~~G~~v~~g  227 (314)
                      ...+|.+|---|...   ++.++..|+++|++|.-.
T Consensus       100 ~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         100 LPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence            113999997776432   488999999999998654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.08  E-value=0.0097  Score=42.73  Aligned_cols=92  Identities=20%  Similarity=0.197  Sum_probs=56.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHH-HcCCcEEEEecCCCCcHHHHHHHHh------CCCcEEEecChhhHHHHHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIAR-HRGIHSINIIRDRAGSDEAKEKLKG------LGADEVFTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~-~~g~~vi~~~~~~~~~~~~~~~~~~------lg~~~~~~~~~~~~~~i~~~~~~~g  196 (314)
                      |+.+||-.|+  +.|..++.+++ ..+++++++--    +++..+.+++      .+....+...+.     .......+
T Consensus         1 p~~~vLDlGc--G~G~~~~~l~~~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~i~~~~~d~-----~~~~~~~~   69 (112)
T PF12847_consen    1 PGGRVLDLGC--GTGRLSIALARLFPGARVVGVDI----SPEMLEIARERAAEEGLSDRITFVQGDA-----EFDPDFLE   69 (112)
T ss_dssp             TTCEEEEETT--TTSHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHHHHHTTTTTTEEEEESCC-----HGGTTTSS
T ss_pred             CCCEEEEEcC--cCCHHHHHHHhcCCCCEEEEEeC----CHHHHHHHHHHHHhcCCCCCeEEEECcc-----ccCcccCC
Confidence            6889999998  34888888888 46778666653    6666666642      122222222221     11111112


Q ss_pred             CCcEEEecC-CCc----c------HHHHHHhcccCCEEEEE
Q 021311          197 EPALGFNCV-GGN----S------ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       197 ~~d~v~d~~-g~~----~------~~~~~~~l~~~G~~v~~  226 (314)
                      ++|+|+... ...    .      ++.+.+.|+|+|+++.-
T Consensus        70 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   70 PFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             CEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            599999888 321    1      46788899999999863

...

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.019  Score=48.06  Aligned_cols=35  Identities=17%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|.+|...++.+...|++++++.+.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~   42 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARS   42 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999999999999888889999888753

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.03  E-value=0.06  Score=46.74  Aligned_cols=81  Identities=20%  Similarity=0.297  Sum_probs=49.0

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCC--c-EEEecChhhHHHHHHHhcCCCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGA--D-EVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~--~-~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      ..|++|||+|++|.+|..++..+...|.+++++++..... ++...+.. .+.  . ..+..+-.+.+.+.+...   ++
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~   78 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDR-KKTEHLLALDGAKERLKLFKADLLEESSFEQAIE---GC   78 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcch-HHHHHHHhccCCCCceEEEecCCCCcchHHHHHh---CC
Confidence            3578999999999999999988888899998888653211 22222211 111  1 222222112223444333   39


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+||.+++.
T Consensus        79 d~vih~A~~   87 (322)
T PLN02986         79 DAVFHTASP   87 (322)
T ss_pred             CEEEEeCCC
Confidence            999999973

>PRK05599 hypothetical protein; Provisional

Probab=96.02  E-value=0.042  Score=45.69  Aligned_cols=80  Identities=21%  Similarity=0.199  Sum_probs=46.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc--EEE--ecChh-hHHHH-HHHhcCCCCCcE
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD--EVF--TESQL-EVKNV-KGLLANLPEPAL  200 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~--~~~~~-~~~~i-~~~~~~~g~~d~  200 (314)
                      +++|+|+++++|.+.+..+. .|.+++.+.+.....++..+.+++.+..  ..+  |-.+. ..+.+ .+.....|++|+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   80 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL   80 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence            68999999999999987766 4999888875321111112233344432  222  22221 22222 222222346999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +++++|.
T Consensus        81 lv~nag~   87 (246)
T PRK05599         81 AVVAFGI   87 (246)
T ss_pred             EEEecCc
Confidence            9999985

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=96.01  E-value=0.061  Score=46.61  Aligned_cols=79  Identities=19%  Similarity=0.161  Sum_probs=47.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHH-HHHhCC---Cc-EE--EecChh-hHHHH-HHHhcC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKE-KLKGLG---AD-EV--FTESQL-EVKNV-KGLLAN  194 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~-~~~~lg---~~-~~--~~~~~~-~~~~i-~~~~~~  194 (314)
                      +++++|+|+++++|.+++..+...| ++++.+.+.    +++.+ ..+.++   .. ..  .|-.+. ..+.+ .+....
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   78 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRD----FLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRES   78 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC----HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999998888889 888887753    33322 223332   11 12  233222 22222 222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        79 ~~~iD~lI~nAG~   91 (314)
T TIGR01289        79 GRPLDALVCNAAV   91 (314)
T ss_pred             CCCCCEEEECCCc
Confidence            2359999999874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.00  E-value=0.069  Score=44.28  Aligned_cols=81  Identities=17%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EEecC--hh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VFTES--QL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~~~~--~~-~~~~-i~~~~~~  194 (314)
                      .+++++|+|++|.+|..++..+...|++++++.+.   +++..    +.++..+.+. .+..+  +. .+++ +.+....
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNS---SKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCC---cHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            36899999999999999998888889998866542   22222    2223333322 22222  21 1222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+.+|++|.|+|.
T Consensus        82 ~~~id~vi~~ag~   94 (247)
T PRK12935         82 FGKVDILVNNAGI   94 (247)
T ss_pred             cCCCCEEEECCCC
Confidence            3459999999985

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.00  E-value=0.063  Score=43.39  Aligned_cols=99  Identities=15%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHH----HhCCCc---EEEecChhhHHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKL----KGLGAD---EVFTESQLEVKN  187 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~----~~lg~~---~~~~~~~~~~~~  187 (314)
                      .+...++++++||-.|+  +.|..+..+++..+  .+++++-.    +++..+.+    ...+..   .++..+...  .
T Consensus        65 ~~~l~~~~~~~VLDiG~--GsG~~~~~la~~~~~~g~V~~iD~----~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~--~  136 (205)
T PRK13944         65 CELIEPRPGMKILEVGT--GSGYQAAVCAEAIERRGKVYTVEI----VKELAIYAAQNIERLGYWGVVEVYHGDGKR--G  136 (205)
T ss_pred             HHhcCCCCCCEEEEECc--CccHHHHHHHHhcCCCCEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEEECCccc--C
Confidence            34467889999999997  34777777787764  45655553    44444333    344432   222222110  0


Q ss_pred             HHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      +    ...+.||.|+-+...... ..+.+.|+++|+++..-
T Consensus       137 ~----~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        137 L----EKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             C----ccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence            1    111259999877665444 67789999999998754

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.97  E-value=0.087  Score=44.48  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             hcccccHHHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC
Q 021311          103 ATIIVNPLTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~  181 (314)
                      ...|+++...+..+.. -++ -.|++++|.|.+..+|.-+..++...|++|.++-..   +.                  
T Consensus       142 ~~~PcTp~av~~ll~~-~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---T~------------------  199 (287)
T PRK14176        142 GLVPCTPHGVIRALEE-YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---TD------------------  199 (287)
T ss_pred             CCCCCcHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---CC------------------
Confidence            4567777777777766 444 479999999998889999999999999988665521   10                  


Q ss_pred             hhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       182 ~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                           ++.+.+.   ..|+++.++|.+.+- --++++++..++.+|..
T Consensus       200 -----~l~~~~~---~ADIvv~AvG~p~~i-~~~~vk~gavVIDvGin  238 (287)
T PRK14176        200 -----DLKKYTL---DADILVVATGVKHLI-KADMVKEGAVIFDVGIT  238 (287)
T ss_pred             -----CHHHHHh---hCCEEEEccCCcccc-CHHHcCCCcEEEEeccc
Confidence                 1222222   399999999987652 23588999999999954

>PRK06123 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.055  Score=44.88  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      ++++||+|++|.+|...++.+...|++++...+.   ++++.    +.++..+... .+  |-.+. ..++ +.+.....
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLR---NRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDREL   78 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCC---CHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            4689999999999999998888889987765432   22222    2233344332 22  22221 2222 22222223


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|+++.|+|.
T Consensus        79 ~~id~li~~ag~   90 (248)
T PRK06123         79 GRLDALVNNAGI   90 (248)
T ss_pred             CCCCEEEECCCC
Confidence            459999999985

>PRK07041 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.032  Score=45.76  Aligned_cols=75  Identities=13%  Similarity=0.093  Sum_probs=46.2

Q ss_pred             EEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhC--CCc-EEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          129 VQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGL--GAD-EVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       129 lI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~l--g~~-~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      ||+|++|.+|...++.+...|++++.+.+.    .++.+. ...+  +.. +.+..+-.+.+++.+.....+++|.++.+
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~----~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~   76 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRS----RDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT   76 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence            589999999999998888899999888753    333222 2222  222 22322222223344433333459999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      +|.
T Consensus        77 ag~   79 (230)
T PRK07041         77 AAD   79 (230)
T ss_pred             CCC
Confidence            985

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.96  E-value=0.053  Score=46.77  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=66.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCcEE--EecChhhHHHHHHH----hcCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEV--FTESQLEVKNVKGL----LANL  195 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~~--~~~~~~~~~~i~~~----~~~~  195 (314)
                      -.+.+++|+|+++++|..++.-+...|++|+..++.....++..+.+.. .....+  +.-+-.+.+.++..    ....
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~  112 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKE  112 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcC
Confidence            3568999999999999999999999999999999753222333333332 322222  11121122232222    2222


Q ss_pred             CCCcEEEecCCCc------------------------cHHHHHHhcccC--CEEEEEcCCC
Q 021311          196 PEPALGFNCVGGN------------------------SASKVLKFLSQG--GTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~------------------------~~~~~~~~l~~~--G~~v~~g~~~  230 (314)
                      ++.|+.++++|--                        .+..+++.|+..  +|+|.+++..
T Consensus       113 ~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~  173 (314)
T KOG1208|consen  113 GPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSIL  173 (314)
T ss_pred             CCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCcc
Confidence            3599999999831                        114455666544  8999998654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.95  E-value=0.27  Score=40.32  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=60.1

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCc--EEEEecCC----CCcH-----HHHHHHHhCCCcEEEecChhhHHHHHHH
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIH--SINIIRDR----AGSD-----EAKEKLKGLGADEVFTESQLEVKNVKGL  191 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~--vi~~~~~~----~~~~-----~~~~~~~~lg~~~~~~~~~~~~~~i~~~  191 (314)
                      -.+.+++|.|+ |+.|..++..+...|++  .+.+++.+    ....     ....+++.++... .+   ..   +.+.
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~---~~---l~~~   94 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG---GT---LKEA   94 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc---CC---HHHH
Confidence            45689999999 99999999888888998  77666553    1111     1233444443211 11   11   1111


Q ss_pred             hcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCC
Q 021311          192 LANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~  229 (314)
                      ..   ++|+++++++...+ ...++.|.++..++.+.++
T Consensus        95 l~---~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~lsnP  130 (226)
T cd05311          95 LK---GADVFIGVSRPGVVKKEMIKKMAKDPIVFALANP  130 (226)
T ss_pred             Hh---cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeCCC
Confidence            22   38999999985444 5777888887776666533

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.94  E-value=0.06  Score=44.59  Aligned_cols=86  Identities=14%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH--------------------HHHHHhCCCcEEEecChh-
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA--------------------KEKLKGLGADEVFTESQL-  183 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~--------------------~~~~~~lg~~~~~~~~~~-  183 (314)
                      +.+|+|.|+ |++|..++..+...|...+.++|.+.-..++                    .+.++++..+.-+..... 
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~  102 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK  102 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence            378999999 9999999999999999999888764422111                    123333433322221111 


Q ss_pred             -hHHHHHHHhcCCCCCcEEEecCCCccHHHHH
Q 021311          184 -EVKNVKGLLANLPEPALGFNCVGGNSASKVL  214 (314)
Q Consensus       184 -~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~  214 (314)
                       ..+.+.++..   ++|+|+||..+......+
T Consensus       103 i~~~~~~~~~~---~~DlVvd~~D~~~~r~~l  131 (240)
T TIGR02355       103 LDDAELAALIA---EHDIVVDCTDNVEVRNQL  131 (240)
T ss_pred             CCHHHHHHHhh---cCCEEEEcCCCHHHHHHH
Confidence             1122333333   399999999886654433

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=95.94  E-value=0.056  Score=44.87  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EEecC--h-hhHHH-HHHHhcCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VFTES--Q-LEVKN-VKGLLANLP  196 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~~~~--~-~~~~~-i~~~~~~~g  196 (314)
                      +++||+|++|++|..+++.+...|++++.+.+.   .+++.    +.++..+... .+..+  + ...+. +.+.....+
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYAR---DAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG   79 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            589999999999999998888889998776532   22222    2233333332 22222  1 12222 222222233


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|+++.++|.
T Consensus        80 ~id~li~~ag~   90 (248)
T PRK06947         80 RLDALVNNAGI   90 (248)
T ss_pred             CCCEEEECCcc
Confidence            59999999984

>PRK05855 short chain dehydrogenase; Validated

Probab=95.93  E-value=0.045  Score=51.64  Aligned_cols=80  Identities=23%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .+.++||+|++|++|..+++.+...|++++.+.+.    .++.+    .++..|... .+  |-.+. ..++ +.+....
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDID----EAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999998888899998888753    33332    223334322 22  22222 2222 2222223


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++|+|.
T Consensus       390 ~g~id~lv~~Ag~  402 (582)
T PRK05855        390 HGVPDIVVNNAGI  402 (582)
T ss_pred             cCCCcEEEECCcc
Confidence            3469999999985

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.92  E-value=0.079  Score=44.17  Aligned_cols=83  Identities=16%  Similarity=0.140  Sum_probs=49.0

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .+++||+|++|.+|..++..+...|++++++.+..... .+..+.++..+.. ..+  |..+. ...+ +.......+++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI   81 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            36899999999999999988888899998877542111 1112222333332 222  22221 2222 22232333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.|+|.
T Consensus        82 d~vi~~ag~   90 (256)
T PRK12745         82 DCLVNNAGV   90 (256)
T ss_pred             CEEEECCcc
Confidence            999999874

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.92  E-value=0.056  Score=45.00  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=29.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++++||+|++|.+|...+..+...|.+++++.+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~   34 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLG   34 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999998888889998888853

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.91  E-value=0.08  Score=43.10  Aligned_cols=99  Identities=21%  Similarity=0.230  Sum_probs=59.2

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHH----HhCCCcE--EEecChhhHHHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKL----KGLGADE--VFTESQLEVKNV  188 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~----~~lg~~~--~~~~~~~~~~~i  188 (314)
                      .+...++++++||-.|+  +.|..++.+++..+.  +++++-.    +++..+.+    +++|.+.  ++..+..     
T Consensus        70 ~~~l~~~~~~~VLDiG~--GsG~~a~~la~~~~~~g~V~~vD~----~~~~~~~A~~~~~~~g~~~v~~~~~d~~-----  138 (215)
T TIGR00080        70 TELLELKPGMKVLEIGT--GSGYQAAVLAEIVGRDGLVVSIER----IPELAEKAERRLRKLGLDNVIVIVGDGT-----  138 (215)
T ss_pred             HHHhCCCCcCEEEEECC--CccHHHHHHHHHhCCCCEEEEEeC----CHHHHHHHHHHHHHCCCCCeEEEECCcc-----
Confidence            34467899999999997  347777778887654  3555542    44444444    3455432  2211111     


Q ss_pred             HHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          189 KGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                       +.....+.||+|+-+...... ....+.|+++|+++..-
T Consensus       139 -~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       139 -QGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             -cCCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEE
Confidence             000111249998865544433 67789999999988754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.91  E-value=0.088  Score=44.27  Aligned_cols=97  Identities=14%  Similarity=0.234  Sum_probs=70.6

Q ss_pred             cccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh
Q 021311          104 TIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL  183 (314)
Q Consensus       104 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  183 (314)
                      ..|+++...+..+....---.|++++|.|.+..+|.=+..++...|++|..+-..   +                    .
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---T--------------------~  193 (278)
T PRK14172        137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---T--------------------K  193 (278)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---C--------------------C
Confidence            5677777777777663323579999999999999999999999999988655421   1                    0


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                         .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       194 ---~l~~~~~---~ADIvIsAvGkp~~-i~~~~ik~gavVIDvGin~  233 (278)
T PRK14172        194 ---NLKEVCK---KADILVVAIGRPKF-IDEEYVKEGAIVIDVGTSS  233 (278)
T ss_pred             ---CHHHHHh---hCCEEEEcCCCcCc-cCHHHcCCCcEEEEeeccc
Confidence               1222222   39999999998776 2246789999999998543

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.89  E-value=0.091  Score=44.29  Aligned_cols=97  Identities=13%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      +.+|+++...+..+....---.|++++|.|.+..+|.-+..++...+++|..+-..   +.                   
T Consensus       137 ~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---T~-------------------  194 (284)
T PRK14177        137 TYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---TQ-------------------  194 (284)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---CC-------------------
Confidence            45677777777766653333579999999999999999999999999988765521   11                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                          ++.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|..
T Consensus       195 ----~l~~~~~---~ADIvIsAvGk~~~-i~~~~ik~gavVIDvGin  233 (284)
T PRK14177        195 ----NLPSIVR---QADIIVGAVGKPEF-IKADWISEGAVLLDAGYN  233 (284)
T ss_pred             ----CHHHHHh---hCCEEEEeCCCcCc-cCHHHcCCCCEEEEecCc
Confidence                1222232   39999999998776 225788999999999954

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.88  E-value=0.043  Score=42.02  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=60.3

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh----hhHHH-HHHHhcCCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ----LEVKN-VKGLLANLP  196 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~----~~~~~-i~~~~~~~g  196 (314)
                      -.+|-.-||+|+++++|.+++..+...|+.++..--+   ...-.+.++++|...++...+    .++.. +...-...|
T Consensus         6 s~kglvalvtggasglg~ataerlakqgasv~lldlp---~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfg   82 (260)
T KOG1199|consen    6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLP---QSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFG   82 (260)
T ss_pred             hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCC---cccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhcc
Confidence            3456677999999999999999998899999887765   344457889999988876543    22221 222223345


Q ss_pred             CCcEEEecCCCc
Q 021311          197 EPALGFNCVGGN  208 (314)
Q Consensus       197 ~~d~v~d~~g~~  208 (314)
                      ..|+.++|+|..
T Consensus        83 rld~~vncagia   94 (260)
T KOG1199|consen   83 RLDALVNCAGIA   94 (260)
T ss_pred             ceeeeeecccee
Confidence            699999999963

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.87  E-value=0.28  Score=35.39  Aligned_cols=92  Identities=16%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      |+|+|. |.+|+..++.++..+.+++++..    ++++.+.+++.|. .++..+..+.+.+++..-.  +++.++-+++.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~----d~~~~~~~~~~~~-~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~   72 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDR----DPERVEELREEGV-EVIYGDATDPEVLERAGIE--KADAVVILTDD   72 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEES----SHHHHHHHHHTTS-EEEES-TTSHHHHHHTTGG--CESEEEEESSS
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEEC----CcHHHHHHHhccc-ccccccchhhhHHhhcCcc--ccCEEEEccCC
Confidence            678999 99999999999996656666663    7788888888884 4555554444455554333  48999988887


Q ss_pred             ccH----HHHHHhcccCCEEEEEc
Q 021311          208 NSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       208 ~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      +..    ...++.+.+..+++...
T Consensus        73 d~~n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   73 DEENLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCeEEEEE
Confidence            654    34445566777777654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.87  E-value=0.12  Score=46.11  Aligned_cols=93  Identities=23%  Similarity=0.305  Sum_probs=55.9

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHh--CCCc-EEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKG--LGAD-EVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~--lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      |+|+|+ |.+|..+++.+....-. .+++++.   +.++.+.+.+  .+.. ....-+-.+.+.+.+...+   .|+|++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~---~dvVin   73 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADR---NPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRG---CDVVIN   73 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEES---SHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT---SSEEEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEEC---CHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhc---CCEEEE
Confidence            789999 99999999988877653 5555543   5666555432  2222 1222222233456666655   799999


Q ss_pred             cCCCccH-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      |+|.... .-+..|+..+-.+|..+
T Consensus        74 ~~gp~~~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT-EEEESS
T ss_pred             CCccchhHHHHHHHHHhCCCeeccc
Confidence            9998754 45556778888888843

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.86  E-value=0.15  Score=42.85  Aligned_cols=104  Identities=15%  Similarity=0.208  Sum_probs=59.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcH--------------------HHHHHHHhCCCcE-EEecCh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD--------------------EAKEKLKGLGADE-VFTESQ  182 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~--------------------~~~~~~~~lg~~~-~~~~~~  182 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.+++.+.-..                    .-.+.+.++..+. +...++
T Consensus        29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~  107 (268)
T PRK15116         29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD  107 (268)
T ss_pred             cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence            4589999999 99999999999999988888886542111                    1112223333332 211211


Q ss_pred             h-hHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHh-cccCCEEEEEcCCC
Q 021311          183 L-EVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKF-LSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~-~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~-l~~~G~~v~~g~~~  230 (314)
                      . ..+.+.++...  ++|+|+||.+.... ..+.+. .+.+-.++..++..
T Consensus       108 ~i~~e~~~~ll~~--~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag  156 (268)
T PRK15116        108 FITPDNVAEYMSA--GFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG  156 (268)
T ss_pred             ccChhhHHHHhcC--CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            1 11233333322  49999999997444 223333 34445566666443

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.047  Score=52.46  Aligned_cols=79  Identities=22%  Similarity=0.326  Sum_probs=49.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcE-EE--ecChh-hHHH-HHHHhcCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADE-VF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      +++++|+|++|++|..++..+...|++++++.+.    +++.+.    +...+... .+  |-.+. ..++ +.+.....
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~  446 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARN----GEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH  446 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            6789999999999999998888889999988853    333222    22233322 22  22221 2222 22233333


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      |++|+++.++|.
T Consensus       447 g~id~li~~Ag~  458 (657)
T PRK07201        447 GHVDYLVNNAGR  458 (657)
T ss_pred             CCCCEEEECCCC
Confidence            459999999984

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.85  E-value=0.066  Score=44.53  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|++|.+|..++..+...|++++.+.+
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            3578999999999999999988888999987664

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.09  Score=43.53  Aligned_cols=84  Identities=10%  Similarity=0.129  Sum_probs=49.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcE-EEec--Chh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADE-VFTE--SQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~-~~~~--~~~-~~~~-i~~~~~~  194 (314)
                      .+.+++|+|++|.+|...+..+...|++++++.+....+.+..+.    ....+... .+..  .+. ..++ +.+....
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE   84 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            357899999999999999988888899988866432223333222    22333332 2222  221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|.++.++|.
T Consensus        85 ~~~~d~vi~~ag~   97 (249)
T PRK12827         85 FGRLDILVNNAGI   97 (249)
T ss_pred             hCCCCEEEECCCC
Confidence            2359999999985

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=95.85  E-value=0.053  Score=46.94  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=45.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||+|++|.+|..+++.+...|.+++++.+...............+....+..+-...+.+.+..... ++|++++++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEH-KIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhC-CCcEEEECcc
Confidence            489999999999999998888899887664321111222111111111122222211222333333222 4999999997


Q ss_pred             C
Q 021311          207 G  207 (314)
Q Consensus       207 ~  207 (314)
                      .
T Consensus        80 ~   80 (328)
T TIGR01179        80 L   80 (328)
T ss_pred             c
Confidence            4

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.83  E-value=0.13  Score=43.51  Aligned_cols=98  Identities=17%  Similarity=0.254  Sum_probs=70.9

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+....---.|++++|.|.+..+|.-+..++...+++|.++-..   + .                  
T Consensus       136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---t-~------------------  193 (284)
T PRK14190        136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---T-K------------------  193 (284)
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---c-h------------------
Confidence            35677777777777663323579999999999999999999999999988765421   1 0                  


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+.+.+.   ..|+++-++|.+.+ ---+.+++|..++.+|...
T Consensus       194 ----~l~~~~~---~ADIvI~AvG~p~~-i~~~~ik~gavVIDvGi~~  233 (284)
T PRK14190        194 ----NLAELTK---QADILIVAVGKPKL-ITADMVKEGAVVIDVGVNR  233 (284)
T ss_pred             ----hHHHHHH---hCCEEEEecCCCCc-CCHHHcCCCCEEEEeeccc
Confidence                1222222   39999999998775 2245679999999998543

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.82  E-value=0.1  Score=44.04  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      +..|+++...+..+....---.|++++|.|.+..+|.=+..++...|++|..+-..   +.                   
T Consensus       136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~---T~-------------------  193 (282)
T PRK14180        136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---TT-------------------  193 (282)
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC---CC-------------------
Confidence            46777777777777664334579999999999999999999999999988665521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+++.+.   ..|+++-++|.+.+ ---++++++..++.+|...
T Consensus       194 ----dl~~~~k---~ADIvIsAvGkp~~-i~~~~vk~gavVIDvGin~  233 (282)
T PRK14180        194 ----DLKSHTT---KADILIVAVGKPNF-ITADMVKEGAVVIDVGINH  233 (282)
T ss_pred             ----CHHHHhh---hcCEEEEccCCcCc-CCHHHcCCCcEEEEecccc
Confidence                1222222   39999999999876 2237889999999999543

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.82  E-value=0.051  Score=45.52  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             CCCEEEEcCC--CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCc-EE--EecChh-hHHHH-HHHhcCC
Q 021311          124 SGDSIVQNGA--TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGAD-EV--FTESQL-EVKNV-KGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~--~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~-~~--~~~~~~-~~~~i-~~~~~~~  195 (314)
                      .+++++|+|+  ++++|.++++.+...|++++.+.+..  .++..+. ..+++.. ..  .|-.+. ..+++ .+.....
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~   83 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR--ALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHV   83 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc--chhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4689999998  79999999988888999988776431  1232222 2334322 12  232222 22332 2222233


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      |++|++++++|.
T Consensus        84 g~iD~li~nAG~   95 (256)
T PRK07889         84 DGLDGVVHSIGF   95 (256)
T ss_pred             CCCcEEEEcccc
Confidence            469999999974

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.045  Score=45.31  Aligned_cols=33  Identities=24%  Similarity=0.190  Sum_probs=29.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++++|+|++|.+|...++.+...|++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~   34 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARD   34 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            589999999999999999888889999888753

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.81  E-value=0.074  Score=44.02  Aligned_cols=79  Identities=14%  Similarity=0.072  Sum_probs=47.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      +++||+|++|.+|...+..+...|++++++...   +.++.    ..++..+.. ..+  |..+. .+++ +.+.....+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   78 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQ---NLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDE   78 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---ChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            479999999999999999888889998765432   22222    222333432 222  22222 2233 222332334


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|+++.++|.
T Consensus        79 ~id~vi~~ag~   89 (247)
T PRK09730         79 PLAALVNNAGI   89 (247)
T ss_pred             CCCEEEECCCC
Confidence            69999999985

>PRK08328 hypothetical protein; Provisional

Probab=95.80  E-value=0.12  Score=42.69  Aligned_cols=35  Identities=14%  Similarity=0.220  Sum_probs=30.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.++|.+
T Consensus        26 ~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3478999999 9999999999999999988888754

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.80  E-value=0.014  Score=49.10  Aligned_cols=77  Identities=18%  Similarity=0.140  Sum_probs=47.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecChh-hHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTESQL-EVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~-~~~~-i~~~~~~~g~~d~  200 (314)
                      .++++||+|++|.+|.++++.+...|++++.+.+...    +..   ...... ..|-.+. ..++ +.+.....+++|+
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~----~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   80 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG----DGQ---HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDG   80 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc----ccc---cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4689999999999999999999999999988774321    110   011111 1222222 2222 2222333346999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ++.|+|.
T Consensus        81 li~~Ag~   87 (266)
T PRK06171         81 LVNNAGI   87 (266)
T ss_pred             EEECCcc
Confidence            9999984

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.1  Score=42.55  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=49.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecChh-hHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTESQL-EVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~-~~~~i~~~~~~~g~~d~v~d  203 (314)
                      ++++|+|++|.+|...++.+...|++++.+.+    +.+..+.+...+... ..|-.+. .++++.+...+. ++|+++.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r----~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATAR----DAAALAALQALGAEALALDVADPASVAGLAWKLDGE-ALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEEC----CHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCC-CCCEEEE
Confidence            47999999999999999888788999888875    344444454444331 2222222 223332223332 4999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      ++|.
T Consensus        77 ~ag~   80 (222)
T PRK06953         77 VAGV   80 (222)
T ss_pred             CCCc
Confidence            9875

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=95.78  E-value=0.07  Score=43.99  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=29.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +++||+|++|.+|..+++.+...|++++++.+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r   32 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCG   32 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            47899999999999999999899999988876

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.77  E-value=0.11  Score=43.79  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=71.3

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ..+|+++...+..+....---.|++++|.|.+..+|.=+.+++...+++|.++-..   +.                   
T Consensus       134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~---T~-------------------  191 (282)
T PRK14169        134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---TR-------------------  191 (282)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC---CC-------------------
Confidence            35677777777777653323478999999999999999999999999988766421   11                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          ++.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       192 ----~l~~~~~---~ADIvI~AvG~p~~-i~~~~vk~GavVIDvGin~  231 (282)
T PRK14169        192 ----NLKQLTK---EADILVVAVGVPHF-IGADAVKPGAVVIDVGISR  231 (282)
T ss_pred             ----CHHHHHh---hCCEEEEccCCcCc-cCHHHcCCCcEEEEeeccc
Confidence                1222222   39999999998876 2246889999999999543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.77  E-value=0.087  Score=42.67  Aligned_cols=104  Identities=16%  Similarity=0.119  Sum_probs=67.0

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHH----HhCCCcEEEec-C-hhhHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKL----KGLGADEVFTE-S-QLEVKNVKG  190 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~-~-~~~~~~i~~  190 (314)
                      .+++....++||=+|.  .+|+.++.+|..+. -..+++++.   .+++.+.+    ++.|.+..+.- . .+..+.+..
T Consensus        53 ~L~~~~~~k~iLEiGT--~~GySal~mA~~l~~~g~l~tiE~---~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          53 LLARLSGPKRILEIGT--AIGYSALWMALALPDDGRLTTIER---DEERAEIARENLAEAGVDDRIELLLGGDALDVLSR  127 (219)
T ss_pred             HHHHhcCCceEEEeec--ccCHHHHHHHhhCCCCCeEEEEeC---CHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence            3456778899998884  77999999999876 334555553   56665555    45666653221 1 233344443


Q ss_pred             HhcCCCCCcEEEecCCCc----cHHHHHHhcccCCEEEEEcC
Q 021311          191 LLANLPEPALGFNCVGGN----SASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g~  228 (314)
                        ...+.||+||--+.-.    .++.+++.|++||-+|.-..
T Consensus       128 --~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         128 --LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             --ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence              1223599997655542    24889999999999986543

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=95.77  E-value=0.064  Score=45.19  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=28.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .+++|+|+++++|...++.+...|++++.+.+
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~   33 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYH   33 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcC
Confidence            57899999999999999999899999988764

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08309 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.3  Score=38.38  Aligned_cols=96  Identities=10%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCC---cEE--EecChh-hHHH-HHHHhcCCCCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGA---DEV--FTESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~---~~~--~~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      +++|+|++| +|..+++.+...|++++++.+    +.++.+.+ ..++.   ...  .|..+. ..++ +.......+++
T Consensus         2 ~vlVtGGtG-~gg~la~~L~~~G~~V~v~~R----~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i   76 (177)
T PRK08309          2 HALVIGGTG-MLKRVSLWLCEKGFHVSVIAR----REVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPF   76 (177)
T ss_pred             EEEEECcCH-HHHHHHHHHHHCcCEEEEEEC----CHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            589999975 444566666667999988875    33333333 22321   112  244432 2222 33333333469


Q ss_pred             cEEEecCCCccHHHHHHhcccCC------EEEEEc
Q 021311          199 ALGFNCVGGNSASKVLKFLSQGG------TMVTYG  227 (314)
Q Consensus       199 d~v~d~~g~~~~~~~~~~l~~~G------~~v~~g  227 (314)
                      |.+|+.+-...........+..|      +++.+-
T Consensus        77 d~lv~~vh~~~~~~~~~~~~~~gv~~~~~~~~h~~  111 (177)
T PRK08309         77 DLAVAWIHSSAKDALSVVCRELDGSSETYRLFHVL  111 (177)
T ss_pred             eEEEEeccccchhhHHHHHHHHccCCCCceEEEEe
Confidence            99999988776655555555544      466654

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.75  E-value=0.074  Score=49.11  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      +.++++|+|+|. |..|++++++++..|+++++.- .   ...+.+.++++|.......+  ..+.+    .   .+|+|
T Consensus         9 ~~~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~~~D-~---~~~~~~~l~~~g~~~~~~~~--~~~~l----~---~~D~V   74 (488)
T PRK03369          9 LLPGAPVLVAGA-GVTGRAVLAALTRFGARPTVCD-D---DPDALRPHAERGVATVSTSD--AVQQI----A---DYALV   74 (488)
T ss_pred             ccCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEc-C---CHHHHHHHHhCCCEEEcCcc--hHhHh----h---cCCEE
Confidence            567899999999 9999999999999999888744 2   33345556667764432212  11222    1   38999


Q ss_pred             EecCCCcc
Q 021311          202 FNCVGGNS  209 (314)
Q Consensus       202 ~d~~g~~~  209 (314)
                      +.+.|-+.
T Consensus        75 V~SpGi~~   82 (488)
T PRK03369         75 VTSPGFRP   82 (488)
T ss_pred             EECCCCCC
Confidence            99998753

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.74  E-value=0.11  Score=41.06  Aligned_cols=115  Identities=12%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             hcccccHHHHHHHHHHhhcC----------CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC
Q 021311          103 ATIIVNPLTALRMLEDFTTL----------NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL  172 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~----------~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l  172 (314)
                      ..+|+++...+..|.. .++          -.|++++|.|.+..+|.=+..++...||+|.++-..   ...   .....
T Consensus        31 ~~~PCTp~avi~lL~~-~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~---~~~---~~~~~  103 (197)
T cd01079          31 SILPCTPLAIVKILEF-LGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDIN---GIQ---VFTRG  103 (197)
T ss_pred             CccCCCHHHHHHHHHH-hCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecC---ccc---ccccc
Confidence            4567777777777765 333          578999999999999999999999999999866211   100   00000


Q ss_pred             CCcEEEecCh--hh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          173 GADEVFTESQ--LE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       173 g~~~~~~~~~--~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      +.  .-+...  .+ .+.+.+.+..   .|+|+-++|.+.+.---+++++|..+|.+|..
T Consensus       104 ~~--~~hs~t~~~~~~~~l~~~~~~---ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~  158 (197)
T cd01079         104 ES--IRHEKHHVTDEEAMTLDCLSQ---SDVVITGVPSPNYKVPTELLKDGAICINFASI  158 (197)
T ss_pred             cc--cccccccccchhhHHHHHhhh---CCEEEEccCCCCCccCHHHcCCCcEEEEcCCC
Confidence            00  000110  01 1124444433   99999999998764446789999999999954

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.069  Score=43.70  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE-EecChh-hHHHHHHHhcCCCCCcEEEe
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV-FTESQL-EVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~~~~~~-~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +++|+|+++.+|.+.++.+...|++++.+.+    +.++.+.+ +.++...+ .|..+. .++++.+...+  ++|++++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r----~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~id~lv~   75 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGA----RRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPH--HLDTIVN   75 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhh--cCcEEEE
Confidence            5899999999999999988888999888774    34444333 34443322 233222 23333332222  4999999


Q ss_pred             cCC
Q 021311          204 CVG  206 (314)
Q Consensus       204 ~~g  206 (314)
                      ++|
T Consensus        76 ~ag   78 (223)
T PRK05884         76 VPA   78 (223)
T ss_pred             CCC
Confidence            875

>PLN02928 oxidoreductase family protein

Probab=95.74  E-value=0.063  Score=47.11  Aligned_cols=97  Identities=14%  Similarity=0.245  Sum_probs=58.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH--HhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL--KGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~--~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .|+++.|+|. |.+|..+++.++.+|++++++.+..  ..+.....  +.-......+... ....+.++...   .|+|
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~---aDiV  230 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSW--TSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGE---ADIV  230 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC--ChhhhhhhccccccccccccccC-cccCHHHHHhh---CCEE
Confidence            4789999999 9999999999999999988775421  11111000  0000000000000 11123333333   8999


Q ss_pred             EecCCCcc-----H-HHHHHhcccCCEEEEEc
Q 021311          202 FNCVGGNS-----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~-----~-~~~~~~l~~~G~~v~~g  227 (314)
                      +.++....     + ...+..|+++..+|.++
T Consensus       231 vl~lPlt~~T~~li~~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        231 VLCCTLTKETAGIVNDEFLSSMKKGALLVNIA  262 (347)
T ss_pred             EECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence            88876421     2 67888999998888876

>PLN00016 RNA-binding protein; Provisional

Probab=95.72  E-value=0.12  Score=46.11  Aligned_cols=101  Identities=14%  Similarity=0.208  Sum_probs=61.4

Q ss_pred             CCCEEEEc----CCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHH-------HHHHHHhCCCcEEEecChhhHHHHHHHh
Q 021311          124 SGDSIVQN----GATSIVGQCIIQIARHRGIHSINIIRDRAGSDE-------AKEKLKGLGADEVFTESQLEVKNVKGLL  192 (314)
Q Consensus       124 ~~~~vlI~----g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~-------~~~~~~~lg~~~~~~~~~~~~~~i~~~~  192 (314)
                      ..++|||+    |++|.+|..++..+...|.+|+++++.......       +...+...+...+. .+-   .++....
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-~D~---~d~~~~~  126 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-GDP---ADVKSKV  126 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-ecH---HHHHhhh
Confidence            34789999    999999999998888889999999875321100       01112223333222 221   1233333


Q ss_pred             cCCCCCcEEEecCCCcc--HHHHHHhcccCC--EEEEEcCC
Q 021311          193 ANLPEPALGFNCVGGNS--ASKVLKFLSQGG--TMVTYGGM  229 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~~--~~~~~~~l~~~G--~~v~~g~~  229 (314)
                      ... ++|+|+++.+...  ...+++.++..|  ++|.+++.
T Consensus       127 ~~~-~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~  166 (378)
T PLN00016        127 AGA-GFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSA  166 (378)
T ss_pred             ccC-CccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccH
Confidence            333 3999999987643  355666665433  78887753

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=95.71  E-value=0.045  Score=44.92  Aligned_cols=76  Identities=18%  Similarity=0.264  Sum_probs=48.1

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      |||+||+|-+|..++..+...|..++.+.+.+.  .......+ .... .+..+-.+.+.+.+...... +|+||.+++.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~--~~~~~~~~-~~~~-~~~~dl~~~~~~~~~~~~~~-~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSN--SESFEEKK-LNVE-FVIGDLTDKEQLEKLLEKAN-IDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCST--GGHHHHHH-TTEE-EEESETTSHHHHHHHHHHHT-ESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccc--cccccccc-ceEE-EEEeeccccccccccccccC-ceEEEEeecc
Confidence            799999999999999999999999988886532  22211111 2211 12121112334444444433 8999999987


Q ss_pred             c
Q 021311          208 N  208 (314)
Q Consensus       208 ~  208 (314)
                      .
T Consensus        76 ~   76 (236)
T PF01370_consen   76 S   76 (236)
T ss_dssp             S
T ss_pred             c
Confidence            3

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.71  E-value=0.12  Score=43.76  Aligned_cols=96  Identities=16%  Similarity=0.270  Sum_probs=69.3

Q ss_pred             cccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh
Q 021311          104 TIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL  183 (314)
Q Consensus       104 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  183 (314)
                      .+|+++...+..+....---.|++|.|.|.++.+|.-++.++...|++++++-.   .+.                    
T Consensus       137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s---~t~--------------------  193 (284)
T PRK14179        137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS---RTR--------------------  193 (284)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC---CCC--------------------
Confidence            567777777777765333357999999999999999999999999999877631   111                    


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +   +.+.+.   ..|+|+-++|.+.+ ..  .++++|..++.+|...
T Consensus       194 ~---l~~~~~---~ADIVI~avg~~~~v~~--~~ik~GavVIDvgin~  233 (284)
T PRK14179        194 N---LAEVAR---KADILVVAIGRGHFVTK--EFVKEGAVVIDVGMNR  233 (284)
T ss_pred             C---HHHHHh---hCCEEEEecCccccCCH--HHccCCcEEEEeccee
Confidence            1   111122   39999999998766 32  3499999999998543

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.69  E-value=0.078  Score=46.38  Aligned_cols=79  Identities=16%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC---CCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL---GADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l---g~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .+++|||+|++|.+|..++..+...|.+++++++... ..........+   +.-..+..+-.+.+.+.+...   ++|+
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   83 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPE-NQKKIAHLRALQELGDLKIFGADLTDEESFEAPIA---GCDL   83 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHh---cCCE
Confidence            4789999999999999999988888999887775432 11111111112   211223222112233444333   3999


Q ss_pred             EEecCC
Q 021311          201 GFNCVG  206 (314)
Q Consensus       201 v~d~~g  206 (314)
                      ||.+++
T Consensus        84 vih~A~   89 (338)
T PLN00198         84 VFHVAT   89 (338)
T ss_pred             EEEeCC
Confidence            999997

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.69  E-value=0.069  Score=46.49  Aligned_cols=77  Identities=16%  Similarity=0.090  Sum_probs=45.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHH-HHHhCCC-c-EEEecChhhHHHHHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKE-KLKGLGA-D-EVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~-~~~~lg~-~-~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|..+++.+...|  .+++++.+.    ..+.. ....+.. . ..+..+-.+.+.+.+...   ++
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~----~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~---~i   75 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD----ELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR---GV   75 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC----hhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh---cC
Confidence            36899999999999999988777665  566666532    22222 1222221 1 222222222334444443   39


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+||.+++.
T Consensus        76 D~Vih~Ag~   84 (324)
T TIGR03589        76 DYVVHAAAL   84 (324)
T ss_pred             CEEEECccc
Confidence            999999874

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN00203 glutamyl-tRNA reductase

Probab=95.68  E-value=1.6  Score=40.59  Aligned_cols=95  Identities=15%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +.+|+|+|+ |.+|.+++..+...|++.+.++..   +.++.+.+ ..++...+. ..  ..+++.+...   ..|+||.
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nR---s~era~~La~~~~g~~i~-~~--~~~dl~~al~---~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNR---SEERVAALREEFPDVEII-YK--PLDEMLACAA---EADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHhCCCceE-ee--cHhhHHHHHh---cCCEEEE
Confidence            689999999 999999999998899865544432   44554443 445321111 11  1112222222   3999999


Q ss_pred             cCCCccH---HHHHHhccc----CC---EEEEEcCC
Q 021311          204 CVGGNSA---SKVLKFLSQ----GG---TMVTYGGM  229 (314)
Q Consensus       204 ~~g~~~~---~~~~~~l~~----~G---~~v~~g~~  229 (314)
                      |++....   ...++.+.+    .+   .++.++.+
T Consensus       336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            9987432   444444432    12   46666644

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.68  E-value=0.078  Score=46.34  Aligned_cols=84  Identities=17%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC----------------------cHHHHHHHHhCCCcEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG----------------------SDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~----------------------~~~~~~~~~~lg~~~~~~~~  181 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.++|.+.-                      .+...+.++++..+..+...
T Consensus        23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            3478999999 999999999999999988888876430                      01112344445443222211


Q ss_pred             --hhhHHHHHHHhcCCCCCcEEEecCCCccHH
Q 021311          182 --QLEVKNVKGLLANLPEPALGFNCVGGNSAS  211 (314)
Q Consensus       182 --~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~  211 (314)
                        +...+.+.++..   ++|+|+||+.+....
T Consensus       102 ~~~~~~~~~~~~~~---~~DlVid~~D~~~~r  130 (338)
T PRK12475        102 VTDVTVEELEELVK---EVDLIIDATDNFDTR  130 (338)
T ss_pred             eccCCHHHHHHHhc---CCCEEEEcCCCHHHH
Confidence              111223444443   399999999875543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.66  E-value=0.11  Score=43.25  Aligned_cols=36  Identities=11%  Similarity=0.185  Sum_probs=31.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.++|.+.
T Consensus        31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            3489999999 99999999999999999888886654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.66  E-value=0.093  Score=45.46  Aligned_cols=35  Identities=20%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .+++|||+|++|.+|..++..+...|.+++++++.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~   37 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRD   37 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence            46899999999999999998888889999888864

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.62  E-value=0.12  Score=45.96  Aligned_cols=37  Identities=16%  Similarity=0.081  Sum_probs=32.5

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +..+++|||+|++|-+|..++..+...|.+++++.+.
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            3467899999999999999999999999999888753

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.61  E-value=0.097  Score=38.30  Aligned_cols=96  Identities=11%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHh-CCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKG-LGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|.|+|++|.+|..+++++... .++.+.++..+............ +....-+...+...+.+     .  +.|+||.|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-----S--DVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-----T--TESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-----h--cCCEEEec
Confidence            5889999999999999888754 55666666542211112222211 11111111111111222     1  49999999


Q ss_pred             CCCccHHHHH-HhcccCCEEEEEcCC
Q 021311          205 VGGNSASKVL-KFLSQGGTMVTYGGM  229 (314)
Q Consensus       205 ~g~~~~~~~~-~~l~~~G~~v~~g~~  229 (314)
                      ++........ ..++.+-+++..+..
T Consensus        74 ~~~~~~~~~~~~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   74 LPHGASKELAPKLLKAGIKVIDLSGD   99 (121)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEESSST
T ss_pred             CchhHHHHHHHHHhhCCcEEEeCCHH
Confidence            9988775444 445777788887643

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.60  E-value=0.1  Score=42.90  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=30.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      +.+|+|.|+ |++|..++..+...|...+.++|.+.
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999 99999999999999998888886543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=95.59  E-value=0.051  Score=47.63  Aligned_cols=83  Identities=13%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-cHHHHHHHHh----CCCc-EEEecChhhHHHHHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-SDEAKEKLKG----LGAD-EVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-~~~~~~~~~~----lg~~-~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      ++++|||+|++|.+|..+++.+...|.+++++.+.... ...+.+.+..    .+.. ..+..+-.+.+.+.+.....+ 
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~-   83 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK-   83 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC-
Confidence            46899999999999999999999899999988754211 0112222210    1111 111111112234444443333 


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+|+.+++.
T Consensus        84 ~d~Vih~A~~   93 (340)
T PLN02653         84 PDEVYNLAAQ   93 (340)
T ss_pred             CCEEEECCcc
Confidence            8999999874

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.58  E-value=0.15  Score=40.46  Aligned_cols=99  Identities=12%  Similarity=0.073  Sum_probs=53.7

Q ss_pred             hhcCCCCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh-hHHHHHHHhcCC
Q 021311          119 FTTLNSGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL-EVKNVKGLLANL  195 (314)
Q Consensus       119 ~~~~~~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~-~~~~i~~~~~~~  195 (314)
                      ...+++|++||..|+ |.-+. +..+++.. +...+..++.   ++..    ...+...+ .|..+. ..+.+.+.+...
T Consensus        27 ~~~i~~g~~VLDiG~-GtG~~-~~~l~~~~~~~~~v~~vDi---s~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        27 FKLIKPGDTVLDLGA-APGGW-SQVAVEQVGGKGRVIAVDL---QPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             hcccCCCCEEEEecC-CCCHH-HHHHHHHhCCCceEEEEec---cccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence            345799999999998 44444 44445443 3333344443   2221    11233222 122222 223455545444


Q ss_pred             CCCcEEEecC-----CC-------------ccHHHHHHhcccCCEEEEEc
Q 021311          196 PEPALGFNCV-----GG-------------NSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       196 g~~d~v~d~~-----g~-------------~~~~~~~~~l~~~G~~v~~g  227 (314)
                       ++|+|+...     |.             ..+..+.++|+++|+++...
T Consensus        98 -~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        98 -KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             -CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence             499999532     21             12356788999999999754

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.58  E-value=0.13  Score=43.31  Aligned_cols=98  Identities=13%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ..+|+++...+..+....---.|++++|.|.+..+|.=+.+++...+++|+++-..   +.                   
T Consensus       135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---T~-------------------  192 (284)
T PRK14170        135 SFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---TK-------------------  192 (284)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---CC-------------------
Confidence            35677777777777653323479999999999999999999999999988766521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       193 ----~l~~~~~---~ADIvI~AvG~~~~-i~~~~vk~GavVIDvGin~  232 (284)
T PRK14170        193 ----DLPQVAK---EADILVVATGLAKF-VKKDYIKPGAIVIDVGMDR  232 (284)
T ss_pred             ----CHHHHHh---hCCEEEEecCCcCc-cCHHHcCCCCEEEEccCcc
Confidence                1222222   39999999998776 2246789999999998543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=95.58  E-value=0.024  Score=48.34  Aligned_cols=145  Identities=17%  Similarity=0.239  Sum_probs=76.5

Q ss_pred             CCCCCEEeeCCCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHH
Q 021311           63 LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCII  142 (314)
Q Consensus        63 ~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~  142 (314)
                      +++|++.++.+    .|.++-..+...++.+.+++.+-.+-  --+-..++..+.+.  ..+|++||=.|.++  |.+++
T Consensus       108 ~~vg~~~~I~P----~w~~~~~~~~~~~I~idPg~AFGTG~--H~TT~lcl~~l~~~--~~~g~~vLDvG~GS--GILai  177 (295)
T PF06325_consen  108 IRVGDRLVIVP----SWEEYPEPPDEIVIEIDPGMAFGTGH--HPTTRLCLELLEKY--VKPGKRVLDVGCGS--GILAI  177 (295)
T ss_dssp             EEECTTEEEEE----TT----SSTTSEEEEESTTSSS-SSH--CHHHHHHHHHHHHH--SSTTSEEEEES-TT--SHHHH
T ss_pred             EEECCcEEEEC----CCcccCCCCCcEEEEECCCCcccCCC--CHHHHHHHHHHHHh--ccCCCEEEEeCCcH--HHHHH
Confidence            55687666654    55566333455677888776433221  00111233444332  67889999999733  55555


Q ss_pred             HHHHHcCCcEEEEecCCCCcHHHHHHHH----h--CCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccH----HH
Q 021311          143 QIARHRGIHSINIIRDRAGSDEAKEKLK----G--LGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA----SK  212 (314)
Q Consensus       143 ~la~~~g~~vi~~~~~~~~~~~~~~~~~----~--lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~----~~  212 (314)
                       .|..+|++.+..++.   ++...+.++    .  +.....+.......       .  ++||+|+-+.-....    ..
T Consensus       178 -aA~klGA~~v~a~Di---Dp~Av~~a~~N~~~N~~~~~~~v~~~~~~~-------~--~~~dlvvANI~~~vL~~l~~~  244 (295)
T PF06325_consen  178 -AAAKLGAKKVVAIDI---DPLAVEAARENAELNGVEDRIEVSLSEDLV-------E--GKFDLVVANILADVLLELAPD  244 (295)
T ss_dssp             -HHHHTTBSEEEEEES---SCHHHHHHHHHHHHTT-TTCEEESCTSCTC-------C--S-EEEEEEES-HHHHHHHHHH
T ss_pred             -HHHHcCCCeEEEecC---CHHHHHHHHHHHHHcCCCeeEEEEEecccc-------c--ccCCEEEECCCHHHHHHHHHH
Confidence             344569977777765   333333332    2  22222121111110       1  269999988776543    56


Q ss_pred             HHHhcccCCEEEEEcCCC
Q 021311          213 VLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~  230 (314)
                      ..+.|+++|.+++.|...
T Consensus       245 ~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  245 IASLLKPGGYLILSGILE  262 (295)
T ss_dssp             CHHHEEEEEEEEEEEEEG
T ss_pred             HHHhhCCCCEEEEccccH
Confidence            667899999999988543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=95.57  E-value=0.11  Score=42.81  Aligned_cols=80  Identities=15%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC---CCc-EEE--ecCh-hhHHH-HHHHhcCCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL---GAD-EVF--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l---g~~-~~~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      +++||+|++|.+|..+++.+...|++++.+.+..  .+...+....+   +.. ..+  |..+ ..+++ +.+.....++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSG--NDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP   80 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCc--HHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999988888899998887542  11222222222   222 122  2222 12222 2222222345


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+++.++|.
T Consensus        81 id~vi~~ag~   90 (245)
T PRK12824         81 VDILVNNAGI   90 (245)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.57  E-value=0.19  Score=42.38  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+....---.|++|+|.|.+..+|.-+..++...|+++.++..    ...                  
T Consensus       130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs----~t~------------------  187 (279)
T PRK14178        130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHS----KTE------------------  187 (279)
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEec----Chh------------------
Confidence            4567777777777766332347899999999889999999999999999887763    211                  


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                          .+.+.+.   ..|+++.++|.+.+ ---+.++++..++.+|..
T Consensus       188 ----~L~~~~~---~ADIvI~Avgk~~l-v~~~~vk~GavVIDVgi~  226 (279)
T PRK14178        188 ----NLKAELR---QADILVSAAGKAGF-ITPDMVKPGATVIDVGIN  226 (279)
T ss_pred             ----HHHHHHh---hCCEEEECCCcccc-cCHHHcCCCcEEEEeecc
Confidence                1222332   39999999986644 112347999999999954

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.56  E-value=0.18  Score=38.55  Aligned_cols=95  Identities=16%  Similarity=0.130  Sum_probs=56.2

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcE-EEecChhhHHHHHHHhcCCCCCcE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADE-VFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~-~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      ..+++++|+|+ |.+|...++.+...|...+.+.+.   +.++.+ .++.++... ..+..+  .+++   .   .++|+
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r---~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~---~~~Dv   84 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNR---TLEKAKALAERFGELGIAIAYLD--LEEL---L---AEADL   84 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcC---CHHHHHHHHHHHhhcccceeecc--hhhc---c---ccCCE
Confidence            55789999998 999999998888886444444432   344433 344555321 011111  1111   1   14999


Q ss_pred             EEecCCCccH-----HHHHHhcccCCEEEEEcCC
Q 021311          201 GFNCVGGNSA-----SKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       201 v~d~~g~~~~-----~~~~~~l~~~G~~v~~g~~  229 (314)
                      |+.|++....     ......++++..++.++..
T Consensus        85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            9999987542     1223456777777777643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.52  E-value=0.096  Score=45.79  Aligned_cols=82  Identities=13%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC----------------------cHHHHHHHHhCCCcEEEecC-
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG----------------------SDEAKEKLKGLGADEVFTES-  181 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~----------------------~~~~~~~~~~lg~~~~~~~~-  181 (314)
                      ..+|+|.|+ |++|..++..+...|...+.+++.+.-                      .+...+.++++....-+... 
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            488999999 999999999999999988888876420                      01112334445443222211 


Q ss_pred             -hhhHHHHHHHhcCCCCCcEEEecCCCccH
Q 021311          182 -QLEVKNVKGLLANLPEPALGFNCVGGNSA  210 (314)
Q Consensus       182 -~~~~~~i~~~~~~~g~~d~v~d~~g~~~~  210 (314)
                       +...+.+.++..   ++|+|+||+.+...
T Consensus       103 ~~~~~~~~~~~~~---~~DlVid~~Dn~~~  129 (339)
T PRK07688        103 QDVTAEELEELVT---GVDLIIDATDNFET  129 (339)
T ss_pred             ccCCHHHHHHHHc---CCCEEEEcCCCHHH
Confidence             112233444443   39999999988655

>PRK08223 hypothetical protein; Validated

Probab=95.52  E-value=0.094  Score=44.36  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=31.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.++|.+.
T Consensus        26 ~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3589999999 99999999999999999999887654

>PRK07023 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.19  Score=41.53  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=29.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++||+|++|.+|..+++.+...|++++++.+.
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~   34 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARS   34 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCCEEEEEecC
Confidence            379999999999999998888889999888754

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.51  E-value=0.37  Score=40.10  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=31.5

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      -.|.+|.|.|- |.+|+.+++++...|++++++++
T Consensus        36 l~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          36 LKGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence            35789999999 99999999999999999999886

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.51  E-value=0.15  Score=43.25  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=71.4

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      +.+|+++...+..+....---.|++++|.|.+..+|.=+..++...+++|.++-..   +.                   
T Consensus       138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~---T~-------------------  195 (294)
T PRK14187        138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA---TR-------------------  195 (294)
T ss_pred             CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC---CC-------------------
Confidence            45677777777777663334579999999999999999999999999998766521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+.+.+.   ..|+++-++|.+.+ ---++++++..++.+|...
T Consensus       196 ----~l~~~~~---~ADIvVsAvGkp~~-i~~~~ik~gaiVIDVGin~  235 (294)
T PRK14187        196 ----DLADYCS---KADILVAAVGIPNF-VKYSWIKKGAIVIDVGINS  235 (294)
T ss_pred             ----CHHHHHh---hCCEEEEccCCcCc-cCHHHcCCCCEEEEecccc
Confidence                1222222   39999999998776 2246788999999998543

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=95.50  E-value=0.093  Score=46.22  Aligned_cols=80  Identities=6%  Similarity=0.123  Sum_probs=46.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC--CCc-EEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL--GAD-EVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~-~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++|||+|++|.+|..+++.+...|.+++++.+..... .+.......  +.. ..+..+-.+.+.+.+...+.+ +|+||
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~-~D~Vi   79 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQ-PDCVM   79 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cchhhhhhcccCCceEEEECCCcChHHHHHHHhhcC-CCEEE
Confidence            4799999999999999999999998876666432111 111111111  111 122222112234444444333 99999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .+++.
T Consensus        80 h~A~~   84 (355)
T PRK10217         80 HLAAE   84 (355)
T ss_pred             ECCcc
Confidence            99974

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.50  E-value=0.16  Score=42.86  Aligned_cols=98  Identities=16%  Similarity=0.188  Sum_probs=71.7

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+....---.|++++|.|.+..+|.=+..++...+++|.++-..   +.                   
T Consensus       135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~---T~-------------------  192 (282)
T PRK14166        135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---TK-------------------  192 (282)
T ss_pred             CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---CC-------------------
Confidence            45677777777777663323579999999999999999999999889888755521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       193 ----nl~~~~~---~ADIvIsAvGkp~~-i~~~~vk~GavVIDvGin~  232 (282)
T PRK14166        193 ----DLSLYTR---QADLIIVAAGCVNL-LRSDMVKEGVIVVDVGINR  232 (282)
T ss_pred             ----CHHHHHh---hCCEEEEcCCCcCc-cCHHHcCCCCEEEEecccc
Confidence                1222232   39999999998776 2245889999999999543

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.49  E-value=0.15  Score=43.14  Aligned_cols=97  Identities=15%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             hcccccHHHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC
Q 021311          103 ATIIVNPLTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~  181 (314)
                      ...|+++...+..+.. -++ -.|++++|.|.+..+|.=+..++...+++|.++-..   +.                  
T Consensus       133 ~~~PcTp~avi~lL~~-~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~---T~------------------  190 (287)
T PRK14173        133 ALEPCTPAGVVRLLKH-YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---TQ------------------  190 (287)
T ss_pred             CCCCCCHHHHHHHHHH-cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC---CC------------------
Confidence            3567777777777765 444 479999999999999999999999999988765521   10                  


Q ss_pred             hhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       182 ~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                        +   +.+.+.   ..|+++-++|.+.+- --+++++|..++.+|...
T Consensus       191 --~---l~~~~~---~ADIvIsAvGkp~~i-~~~~vk~GavVIDVGin~  230 (287)
T PRK14173        191 --D---LPAVTR---RADVLVVAVGRPHLI-TPEMVRPGAVVVDVGINR  230 (287)
T ss_pred             --C---HHHHHh---hCCEEEEecCCcCcc-CHHHcCCCCEEEEccCcc
Confidence              1   222222   399999999987652 356789999999999543

>PLN02650 dihydroflavonol-4-reductase

Probab=95.48  E-value=0.12  Score=45.40  Aligned_cols=35  Identities=20%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ..++|||+|++|.+|..++..+...|.+|+++++.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~   38 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRD   38 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence            45789999999999999999888889999988764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.48  E-value=0.11  Score=42.21  Aligned_cols=35  Identities=14%  Similarity=0.204  Sum_probs=30.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      ...+|+|.|+ |++|..+++.+...|...+.++|.+
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3478999999 9999999999989999988888765

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=95.47  E-value=0.077  Score=45.69  Aligned_cols=78  Identities=13%  Similarity=0.123  Sum_probs=44.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhCC---CcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGLG---ADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg---~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      +|||+|++|.+|..+++.+...|  .+++++.+..  ...+.+.+..+.   ....+..+-.+.+.+.+...+.. +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~-~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLT--YAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQ-PDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCC--cchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcC-CCEE
Confidence            48999999999999998777766  5676654321  111122222221   11223222222334544444333 9999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      |++++.
T Consensus        78 i~~a~~   83 (317)
T TIGR01181        78 VHFAAE   83 (317)
T ss_pred             EEcccc
Confidence            999975

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=95.46  E-value=0.15  Score=44.62  Aligned_cols=80  Identities=9%  Similarity=0.069  Sum_probs=46.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC-c-EEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA-D-EVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~-~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|||+|++|.+|..++..+...|.+|+++.+...........+..++. . ..+..+-.+.+.+.+..... ++|+|+.+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~vvh~   80 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDH-AIDTVIHF   80 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcC-CCCEEEEC
Confidence            689999999999999988888899988875421112222222222221 1 12222222223344433333 39999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      ++.
T Consensus        81 a~~   83 (338)
T PRK10675         81 AGL   83 (338)
T ss_pred             Ccc
Confidence            864

>PLN02686 cinnamoyl-CoA reductase

Probab=95.45  E-value=0.12  Score=45.89  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ...+++|||+|++|.+|..++..+...|.+++++++.
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~   86 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT   86 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3457899999999999999999998899999887753

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.42  E-value=0.18  Score=43.11  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=26.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      .+++++|+|+ |+.|.+++..+...|++.+.++
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~  156 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIF  156 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEE
Confidence            5789999999 8999999988888999744444

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.11  Score=42.61  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=47.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEEecChh-hHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQL-EVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~-~~~~-i~~~~~~~g~~d~  200 (314)
                      .++++||+|++|.+|...++.+...|.+++.+.+...    .     ..... ...|-.+. ..++ +.+..... ++|+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~----~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~d~   71 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAI----D-----DFPGELFACDLADIEQTAATLAQINEIH-PVDA   71 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcc----c-----ccCceEEEeeCCCHHHHHHHHHHHHHhC-CCcE
Confidence            3678999999999999999998899999988886421    1     11111 22233322 2222 33333333 3899


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      ++.|+|.
T Consensus        72 vi~~ag~   78 (234)
T PRK07577         72 IVNNVGI   78 (234)
T ss_pred             EEECCCC
Confidence            9999985

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.40  E-value=0.069  Score=51.39  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-Hh----CCCc--EEE--ecCh-hhHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KG----LGAD--EVF--TESQ-LEVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~----lg~~--~~~--~~~~-~~~~~-i~~~~  192 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+.    .++.+.+ ..    .+..  ..+  |-.+ ..+++ +.+..
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~----~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~  488 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLN----LEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA  488 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCC----HHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            47899999999999999999888899999888753    3332222 11    2321  122  2222 12222 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...|++|++++++|.
T Consensus       489 ~~~g~iDilV~nAG~  503 (676)
T TIGR02632       489 LAYGGVDIVVNNAGI  503 (676)
T ss_pred             HhcCCCcEEEECCCC
Confidence            233469999999985

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.40  E-value=0.19  Score=39.23  Aligned_cols=93  Identities=17%  Similarity=0.272  Sum_probs=59.7

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|.|+||+|-+|...++-|...|-+|.+++++    +.+...   +....++..+-.+...+.....   ++|+|+++.+
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn----~~K~~~---~~~~~i~q~Difd~~~~a~~l~---g~DaVIsA~~   71 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRN----ASKLAA---RQGVTILQKDIFDLTSLASDLA---GHDAVISAFG   71 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeC----hHhccc---cccceeecccccChhhhHhhhc---CCceEEEecc
Confidence            57899999999999999999999999999974    333222   1222233222222233333333   3999999998


Q ss_pred             CccH----------HHHHHhcccC--CEEEEEcCC
Q 021311          207 GNSA----------SKVLKFLSQG--GTMVTYGGM  229 (314)
Q Consensus       207 ~~~~----------~~~~~~l~~~--G~~v~~g~~  229 (314)
                      ....          +..+..|+.-  -|+..+|+.
T Consensus        72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA  106 (211)
T COG2910          72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA  106 (211)
T ss_pred             CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence            7421          2355666653  488888853

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.39  E-value=0.13  Score=44.15  Aligned_cols=33  Identities=15%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEe
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      .|+++||+|++  +++|.+.+..+...|++|++..
T Consensus         7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~   41 (299)
T PRK06300          7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGT   41 (299)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEe
Confidence            57999999995  8999999999999999998854

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.39  E-value=0.02  Score=42.18  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=51.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHH-cCCcEEEEecCCCCcHHHHHHHHhCCCc--EEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          127 SIVQNGATSIVGQCIIQIARH-RGIHSINIIRDRAGSDEAKEKLKGLGAD--EVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +|.|+|++|-+|...++.+.. .+.+....++.+.+.....+.-.-.|..  .+..+     +.+.+...   .+|+++|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-----~~l~~~~~---~~DVvID   73 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-----DDLEELLE---EADVVID   73 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-----S-HHHHTT---H-SEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-----hhHHHhcc---cCCEEEE
Confidence            689999999999999999987 6778777776532110111111111111  00001     12222222   2899999


Q ss_pred             cCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          204 CVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       204 ~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      ++..+.....++.+...|.-+.+|..
T Consensus        74 fT~p~~~~~~~~~~~~~g~~~ViGTT   99 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKHGVPLVIGTT   99 (124)
T ss_dssp             ES-HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred             cCChHHhHHHHHHHHhCCCCEEEECC
Confidence            99655555555555445666667743

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.36  E-value=0.19  Score=42.78  Aligned_cols=93  Identities=22%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      ..+++++|+|+ |++|.+++..+...|+ +++++.+    +.++.+.+ ..++....+.... .   ..+..   ..+|+
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R----~~~~a~~l~~~~~~~~~~~~~~-~---~~~~~---~~~Di  188 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNR----TVERAEELAKLFGALGKAELDL-E---LQEEL---ADFDL  188 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeC----CHHHHHHHHHHhhhccceeecc-c---chhcc---ccCCE
Confidence            45689999998 9999999999999995 5555543    44443333 3343211011100 0   00111   14999


Q ss_pred             EEecCCCccH------HHHHHhcccCCEEEEEc
Q 021311          201 GFNCVGGNSA------SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       201 v~d~~g~~~~------~~~~~~l~~~G~~v~~g  227 (314)
                      |++|+.....      .....+++++..++.+.
T Consensus       189 vInaTp~g~~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        189 IINATSAGMSGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             EEECCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            9999976432      22345677777777775

>PLN02214 cinnamoyl-CoA reductase

Probab=95.35  E-value=0.15  Score=44.84  Aligned_cols=103  Identities=15%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHH-HHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCCcE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE-AKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~-~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      ..+++|||+|++|.+|..++..+...|.+|+++++....... ....+...+.. ..+..+-.+.+.+.+...   ++|+
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   84 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID---GCDG   84 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh---cCCE
Confidence            357899999999999999999888889999988864211010 01111111111 122222112233443333   3999


Q ss_pred             EEecCCCcc-------------HHHHHHhcccC--CEEEEEcC
Q 021311          201 GFNCVGGNS-------------ASKVLKFLSQG--GTMVTYGG  228 (314)
Q Consensus       201 v~d~~g~~~-------------~~~~~~~l~~~--G~~v~~g~  228 (314)
                      ||.+++...             ...+++.+...  .++|++++
T Consensus        85 Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS  127 (342)
T PLN02214         85 VFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS  127 (342)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            999997521             12344444443  37888775

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.35  E-value=0.081  Score=40.72  Aligned_cols=80  Identities=16%  Similarity=0.104  Sum_probs=53.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEec--ChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE--SQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .|..|+++|+.-++|...++-+...|++++++.+    .++.+..+-+.-..++...  +-..++.+++.....+.+|..
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR----~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgL   81 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVAR----NEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGL   81 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEec----CHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhh
Confidence            5788999999999999999999999999999996    5666555543333333221  111234455555554446777


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      ++++|-
T Consensus        82 VNNAgv   87 (245)
T KOG1207|consen   82 VNNAGV   87 (245)
T ss_pred             hccchh
Confidence            776663

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.34  E-value=0.62  Score=40.57  Aligned_cols=102  Identities=8%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHH-HHHcCCcEEEEecCCCCcHHHHHHH-Hh----CCCcEEEecChhhHHHHHHHhcCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQI-ARHRGIHSINIIRDRAGSDEAKEKL-KG----LGADEVFTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~l-a~~~g~~vi~~~~~~~~~~~~~~~~-~~----lg~~~~~~~~~~~~~~i~~~~~~~g  196 (314)
                      +..++++|+|+ |..|.+.+.. +...+++.+.+.+.   ++++.+.+ +.    ++... ..+.+     +.+...   
T Consensus       125 ~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r---~~~~a~~~~~~~~~~~~~~~-~~~~~-----~~~~~~---  191 (325)
T PRK08618        125 EDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSR---TFEKAYAFAQEIQSKFNTEI-YVVNS-----ADEAIE---  191 (325)
T ss_pred             CCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECC---CHHHHHHHHHHHHHhcCCcE-EEeCC-----HHHHHh---
Confidence            45688999999 8888777654 44668888777764   44443332 22    33321 11221     122222   


Q ss_pred             CCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccc
Q 021311          197 EPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVST  238 (314)
Q Consensus       197 ~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  238 (314)
                      ..|+|+.|++....... +++++|-++..+|.......++++
T Consensus       192 ~aDiVi~aT~s~~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~  232 (325)
T PRK08618        192 EADIIVTVTNAKTPVFS-EKLKKGVHINAVGSFMPDMQELPS  232 (325)
T ss_pred             cCCEEEEccCCCCcchH-HhcCCCcEEEecCCCCcccccCCH
Confidence            39999999988654344 899999999999965443334443

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.33  E-value=0.19  Score=42.79  Aligned_cols=97  Identities=13%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             hcccccHHHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC
Q 021311          103 ATIIVNPLTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~  181 (314)
                      ...|+++...+..+.. -++ -.|++++|.|.+..+|.=+..++...|++|.++-..   +.                  
T Consensus       136 ~~~PcTp~aii~lL~~-~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---T~------------------  193 (297)
T PRK14186        136 GLRSCTPAGVMRLLRS-QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---TQ------------------  193 (297)
T ss_pred             CCCCCCHHHHHHHHHH-hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---CC------------------
Confidence            3567777777766655 343 478999999999999999999999999988766521   11                  


Q ss_pred             hhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          182 QLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       182 ~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                           .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       194 -----~l~~~~~---~ADIvIsAvGkp~~-i~~~~ik~gavVIDvGin~  233 (297)
T PRK14186        194 -----DLASITR---EADILVAAAGRPNL-IGAEMVKPGAVVVDVGIHR  233 (297)
T ss_pred             -----CHHHHHh---hCCEEEEccCCcCc-cCHHHcCCCCEEEEecccc
Confidence                 1222222   39999999998765 2246889999999999543

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=95.33  E-value=0.2  Score=42.58  Aligned_cols=98  Identities=13%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      +.+|+++...+..+....---.|++++|.|.+..+|.=+..++...|++|.++-..   +.                   
T Consensus       145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---T~-------------------  202 (299)
T PLN02516        145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---TP-------------------  202 (299)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---CC-------------------
Confidence            46788888877777663323469999999999999999999999999988766521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       203 ----nl~~~~~---~ADIvv~AvGk~~~-i~~~~vk~gavVIDvGin~  242 (299)
T PLN02516        203 ----DPESIVR---EADIVIAAAGQAMM-IKGDWIKPGAAVIDVGTNA  242 (299)
T ss_pred             ----CHHHHHh---hCCEEEEcCCCcCc-cCHHHcCCCCEEEEeeccc
Confidence                1222222   39999999998643 2246789999999999544

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=95.32  E-value=0.16  Score=43.88  Aligned_cols=98  Identities=12%  Similarity=0.149  Sum_probs=71.4

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++......+.+..---.|++++|.|.+..+|.=+..++...+++|.++-..   +.                   
T Consensus       192 ~~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~---T~-------------------  249 (345)
T PLN02897        192 LFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF---TK-------------------  249 (345)
T ss_pred             CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---CC-------------------
Confidence            45677777777777653323479999999999999999999999999988666521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                       +   +.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       250 -n---l~~~~~---~ADIvIsAvGkp~~-v~~d~vk~GavVIDVGin~  289 (345)
T PLN02897        250 -D---PEQITR---KADIVIAAAGIPNL-VRGSWLKPGAVVIDVGTTP  289 (345)
T ss_pred             -C---HHHHHh---hCCEEEEccCCcCc-cCHHHcCCCCEEEEccccc
Confidence             1   122222   39999999998776 3357889999999999543

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.27  E-value=0.18  Score=43.68  Aligned_cols=101  Identities=14%  Similarity=0.212  Sum_probs=62.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC----CcEEEEecCCCCcHHHHHHHHhCCCc--------------EEEecChhhH---
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG----IHSINIIRDRAGSDEAKEKLKGLGAD--------------EVFTESQLEV---  185 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g----~~vi~~~~~~~~~~~~~~~~~~lg~~--------------~~~~~~~~~~---  185 (314)
                      +|.|.|. |.+|..+++.+...+    .++..+.+.  .+.+...++.+.+..              ..++.+.-.+   
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~--~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~   77 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNEL--ADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHS   77 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecC--CCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEc
Confidence            4789999 999999999887653    566666653  244555555443321              1111111000   


Q ss_pred             HHHHHHh-cCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCC
Q 021311          186 KNVKGLL-ANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       186 ~~i~~~~-~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      +...++. ... ++|+||+|+|.... +.+...++.|++.|.++.+..
T Consensus        78 ~~p~~~~w~~~-gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~  124 (325)
T TIGR01532        78 PTPEALPWRAL-GVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGA  124 (325)
T ss_pred             CChhhcccccc-CCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCc
Confidence            0111111 112 49999999998765 677788899989999886643

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.26  E-value=0.17  Score=43.00  Aligned_cols=60  Identities=22%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES  181 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~  181 (314)
                      ..++||. .+|-+.+|..|.+.+.+|+..|.+.+++.... -+.+++..++.+|+..++...
T Consensus        57 G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~-~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          57 GLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPET-MSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             CCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEcCC
Confidence            6699999 45567779999999999999999999988654 588999999999998776544

>PRK04148 hypothetical protein; Provisional

Probab=95.26  E-value=0.61  Score=34.63  Aligned_cols=88  Identities=16%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      -..+.++++.|. | .|...+..+...|.+|+++-    .++...+.++..+...+.+.--..--.+.+      ++|++
T Consensus        14 ~~~~~kileIG~-G-fG~~vA~~L~~~G~~ViaID----i~~~aV~~a~~~~~~~v~dDlf~p~~~~y~------~a~li   81 (134)
T PRK04148         14 KGKNKKIVELGI-G-FYFKVAKKLKESGFDVIVID----INEKAVEKAKKLGLNAFVDDLFNPNLEIYK------NAKLI   81 (134)
T ss_pred             cccCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEE----CCHHHHHHHHHhCCeEEECcCCCCCHHHHh------cCCEE
Confidence            345688999999 6 78755656667898888777    377788888888765554322111011211      48899


Q ss_pred             EecCCCccHH-HHHHhcccCC
Q 021311          202 FNCVGGNSAS-KVLKFLSQGG  221 (314)
Q Consensus       202 ~d~~g~~~~~-~~~~~l~~~G  221 (314)
                      +.+-.....+ .+++..+.-+
T Consensus        82 ysirpp~el~~~~~~la~~~~  102 (134)
T PRK04148         82 YSIRPPRDLQPFILELAKKIN  102 (134)
T ss_pred             EEeCCCHHHHHHHHHHHHHcC
Confidence            8888776663 4444444433

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.25  E-value=0.16  Score=42.12  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++++|.+++..+...|++++++.+.
T Consensus         4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~   38 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARALAREGARVVVAARR   38 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            56899999999999999998888999998888865

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.25  E-value=0.19  Score=41.97  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=28.9

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++  ++|...+..+...|++++++.+.
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            358899999974  79999988888889998887753

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=95.24  E-value=0.11  Score=45.60  Aligned_cols=81  Identities=14%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-cHHHHHHHH-hC----CCc-EEEecChhhHHHHHHHhcCCCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-SDEAKEKLK-GL----GAD-EVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-~~~~~~~~~-~l----g~~-~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      ++|||+||+|.+|..+++.+...|.+++++.+.... ..++...+. ..    +.. ..+..+-.+.+.+.+...+.+ +
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~-~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK-P   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC-C
Confidence            479999999999999999999899999988764211 011222111 11    111 112112122334555444433 8


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+||.+++.
T Consensus        80 d~ViH~Aa~   88 (343)
T TIGR01472        80 TEIYNLAAQ   88 (343)
T ss_pred             CEEEECCcc
Confidence            999999974

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=95.24  E-value=0.17  Score=43.96  Aligned_cols=98  Identities=14%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ..+|+++...+..+....---.|++++|.|.+..+|.=+..++...+++|.++-..   +                    
T Consensus       209 ~f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---T--------------------  265 (364)
T PLN02616        209 LFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---T--------------------  265 (364)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---C--------------------
Confidence            35677777777767653323479999999999999999999999999988766521   1                    


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .   .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       266 ~---nl~~~~r---~ADIVIsAvGkp~~-i~~d~vK~GAvVIDVGIn~  306 (364)
T PLN02616        266 K---NPEEITR---EADIIISAVGQPNM-VRGSWIKPGAVVIDVGINP  306 (364)
T ss_pred             C---CHHHHHh---hCCEEEEcCCCcCc-CCHHHcCCCCEEEeccccc
Confidence            0   1222222   39999999998776 2347889999999999543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.21  E-value=0.21  Score=42.05  Aligned_cols=98  Identities=15%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+.+..---.|++++|.|.+..+|.=...++...|++|.++-..   +.                   
T Consensus       135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---T~-------------------  192 (281)
T PRK14183        135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---TK-------------------  192 (281)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---Cc-------------------
Confidence            45677777777767653223478999999998899999999999899988643310   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       193 ----~l~~~~~---~ADIvV~AvGkp~~-i~~~~vk~gavvIDvGin~  232 (281)
T PRK14183        193 ----DLKAHTK---KADIVIVGVGKPNL-ITEDMVKEGAIVIDIGINR  232 (281)
T ss_pred             ----CHHHHHh---hCCEEEEecCcccc-cCHHHcCCCcEEEEeeccc
Confidence                1122222   39999999998776 2246889999999999543

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=95.20  E-value=0.24  Score=41.20  Aligned_cols=106  Identities=10%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHH----HhCCCcEEEecChh-hHHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKL----KGLGADEVFTESQL-EVKNV  188 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~~~~-~~~~i  188 (314)
                      +..+++...-++||-+|.  .+|+.++.+|+.+  +.+++++-.    .++..+.+    +..|...-++.... ..+.+
T Consensus        71 L~~l~~~~~ak~iLEiGT--~~GySal~la~al~~~g~v~tiE~----~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         71 LNMLLKLINAKNTMEIGV--YTGYSLLATALALPEDGKILAMDI----NRENYELGLPVIQKAGVAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHhCCCEEEEEeC--hhhHHHHHHHhhCCCCCEEEEEeC----CHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence            334455666689999985  7899999999876  345555553    34444433    45564332322221 22334


Q ss_pred             HHHhcC---CCCCcEEEecCCCc----cHHHHHHhcccCCEEEEEc
Q 021311          189 KGLLAN---LPEPALGFNCVGGN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~---~g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      .++...   .+.||.||--+.-.    .++.++++|++||.++.=.
T Consensus       145 ~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        145 DQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             HHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            443321   23599998666543    2378889999999987643

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.17  E-value=0.54  Score=37.77  Aligned_cols=79  Identities=18%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|++++|+|. |.+|..+++.+...|+++++ .+.   +.++.+.+ ..+++. .++..+     +   ...  ..|+++
T Consensus        27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv-~D~---~~~~~~~~~~~~g~~-~v~~~~-----l---~~~--~~Dv~v   90 (200)
T cd01075          27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLIV-ADI---NEEAVARAAELFGAT-VVAPEE-----I---YSV--DADVFA   90 (200)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEE-EcC---CHHHHHHHHHHcCCE-EEcchh-----h---ccc--cCCEEE
Confidence            5789999999 89999999999999999884 443   45555544 344643 222221     1   111  388888


Q ss_pred             ecCCCccH-HHHHHhcc
Q 021311          203 NCVGGNSA-SKVLKFLS  218 (314)
Q Consensus       203 d~~g~~~~-~~~~~~l~  218 (314)
                      -|+..... ...++.|+
T Consensus        91 p~A~~~~I~~~~~~~l~  107 (200)
T cd01075          91 PCALGGVINDDTIPQLK  107 (200)
T ss_pred             ecccccccCHHHHHHcC
Confidence            77655433 55556664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.13  E-value=0.8  Score=41.97  Aligned_cols=116  Identities=9%  Similarity=-0.015  Sum_probs=68.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|||.|+ |.++.-=++.+...|+++.++...  -+++ ...+..-|.-..+ .++...+.+    .   ++++||-
T Consensus        11 ~~~~vlvvGg-G~vA~rk~~~ll~~ga~v~visp~--~~~~-~~~l~~~~~i~~~-~~~~~~~dl----~---~~~lv~~   78 (457)
T PRK10637         11 RDRDCLLVGG-GDVAERKARLLLDAGARLTVNALA--FIPQ-FTAWADAGMLTLV-EGPFDESLL----D---TCWLAIA   78 (457)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC--CCHH-HHHHHhCCCEEEE-eCCCChHHh----C---CCEEEEE
Confidence            5799999999 888887777777889988777632  1222 2223222321111 222221222    1   3999999


Q ss_pred             cCCCccHH-HHHHhcccCCEEEEEcCCCCCCcccccccceec-ceEEEEEe
Q 021311          204 CVGGNSAS-KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGFW  252 (314)
Q Consensus       204 ~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~  252 (314)
                      |++.+..+ ...+..+..|.+|........ .++..+.++.+ ++++.-+.
T Consensus        79 at~d~~~n~~i~~~a~~~~~lvN~~d~~~~-~~f~~pa~~~~g~l~iaisT  128 (457)
T PRK10637         79 ATDDDAVNQRVSEAAEARRIFCNVVDAPKA-ASFIMPSIIDRSPLMVAVSS  128 (457)
T ss_pred             CCCCHHHhHHHHHHHHHcCcEEEECCCccc-CeEEEeeEEecCCEEEEEEC
Confidence            99988775 445556677888887643322 33444444444 45555443

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.12  E-value=0.23  Score=41.96  Aligned_cols=76  Identities=11%  Similarity=0.165  Sum_probs=46.8

Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEEEecChhhHHHHHHHh
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEVFTESQLEVKNVKGLL  192 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~~~~i~~~~  192 (314)
                      .++.. .+...+++++|.|+ |+.+.+++..+...|+..+.++..   +.++.+ .++.++..    ..    +.+    
T Consensus       112 ~~L~~-~~~~~~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR---~~~~a~~la~~~~~~----~~----~~~----  174 (272)
T PRK12550        112 KLLAS-YQVPPDLVVALRGS-GGMAKAVAAALRDAGFTDGTIVAR---NEKTGKALAELYGYE----WR----PDL----  174 (272)
T ss_pred             HHHHh-cCCCCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeC---CHHHHHHHHHHhCCc----ch----hhc----
Confidence            34433 34455679999999 999999998888999975555543   333333 33444321    11    011    


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ... .+|+|++|+.-
T Consensus       175 ~~~-~~dlvINaTp~  188 (272)
T PRK12550        175 GGI-EADILVNVTPI  188 (272)
T ss_pred             ccc-cCCEEEECCcc
Confidence            111 38999999863

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.12  E-value=0.28  Score=41.45  Aligned_cols=98  Identities=15%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHH----cCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARH----RGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~----~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      ...|+++...+..+....---.|++++|.|.+..+|.=+..++..    .++++.++-.    ...              
T Consensus       135 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs----~t~--------------  196 (286)
T PRK14184        135 GFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHS----RTP--------------  196 (286)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeC----Cch--------------
Confidence            356777777777776633234789999999999999999988887    7888876652    111              


Q ss_pred             ecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          179 TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       179 ~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                              .+.+.+.   ..|+++-++|.+.+- --++++++..++.+|...
T Consensus       197 --------~l~~~~~---~ADIVI~AvG~p~li-~~~~vk~GavVIDVGi~~  236 (286)
T PRK14184        197 --------DLAEECR---EADFLFVAIGRPRFV-TADMVKPGAVVVDVGINR  236 (286)
T ss_pred             --------hHHHHHH---hCCEEEEecCCCCcC-CHHHcCCCCEEEEeeeec
Confidence                    1222222   399999999987761 135669999999998543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.12  E-value=0.16  Score=44.05  Aligned_cols=86  Identities=17%  Similarity=0.178  Sum_probs=56.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      |+++-|+|. |.+|...++.++.+|.++++....   ...  +.....+...        ...+.++..   ..|++.-.
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~~---~~~--~~~~~~~~~~--------~~~Ld~lL~---~sDiv~lh  204 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDPY---SPR--ERAGVDGVVG--------VDSLDELLA---EADILTLH  204 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEECCC---Cch--hhhcccccee--------cccHHHHHh---hCCEEEEc
Confidence            789999999 999999999999999999988852   111  1111111110        112333333   28888876


Q ss_pred             CCC-cc----H-HHHHHhcccCCEEEEEc
Q 021311          205 VGG-NS----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~-~~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      +.- +.    . ...+..|+++..+|.++
T Consensus       205 ~PlT~eT~g~i~~~~~a~MK~gailIN~a  233 (324)
T COG0111         205 LPLTPETRGLINAEELAKMKPGAILINAA  233 (324)
T ss_pred             CCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence            654 21    1 67888899988777765

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.08  E-value=0.15  Score=44.94  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.+++.+.
T Consensus        27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3489999999 99999999999999999998887643

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.08  E-value=0.26  Score=41.68  Aligned_cols=98  Identities=12%  Similarity=0.211  Sum_probs=70.0

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..+....---.|++++|.|.+..+|.=+..++...+++|.++-..   +                    
T Consensus       137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---T--------------------  193 (288)
T PRK14171        137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---T--------------------  193 (288)
T ss_pred             CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---C--------------------
Confidence            35677777777777653223578999999999999999999999999988655421   1                    


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .   .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       194 ~---~L~~~~~---~ADIvV~AvGkp~~-i~~~~vk~GavVIDvGin~  234 (288)
T PRK14171        194 H---NLSSITS---KADIVVAAIGSPLK-LTAEYFNPESIVIDVGINR  234 (288)
T ss_pred             C---CHHHHHh---hCCEEEEccCCCCc-cCHHHcCCCCEEEEeeccc
Confidence            0   1222232   39999999997653 2246889999999999543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.05  E-value=0.18  Score=40.45  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      ..+|+|.|+ |++|...++.+...|...+.++|.+
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            488999999 9999999999989999877777664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.04  E-value=0.18  Score=41.44  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .+++++|+|+++.+|...+..+...|++++.+.+.
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~   38 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQ   38 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46799999999999999998888889998887753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.02  E-value=0.14  Score=47.13  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=53.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-------------c----HHHHHHHHhCCCcEEEecChh-hH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-------------S----DEAKEKLKGLGADEVFTESQL-EV  185 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-------------~----~~~~~~~~~lg~~~~~~~~~~-~~  185 (314)
                      .+++|+|+|+ |+.|+.++..++..|.+++++-..+.-             .    ....+.++++|.+..++.... .+
T Consensus       140 ~~~~V~IIG~-GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       140 TGKRVAVIGA-GPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            6789999999 999999999999999987766533210             0    134566788887765544221 10


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCc
Q 021311          186 KNVKGLLANLPEPALGFNCVGGN  208 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~  208 (314)
                       .+..+..   ++|.||.++|..
T Consensus       219 -~~~~~~~---~~D~vilAtGa~  237 (467)
T TIGR01318       219 -SLDDLLE---DYDAVFLGVGTY  237 (467)
T ss_pred             -CHHHHHh---cCCEEEEEeCCC
Confidence             1112221   399999999974

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=94.97  E-value=0.086  Score=44.05  Aligned_cols=74  Identities=16%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||.|++|- |..++..+...|.++++++.    ++...+.+...|...+.... .+.+.+.+.....+ +|+|+|++.
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~----t~~~~~~~~~~g~~~v~~g~-l~~~~l~~~l~~~~-i~~VIDAtH   74 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVT----TSEGKHLYPIHQALTVHTGA-LDPQELREFLKRHS-IDILVDATH   74 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEc----cCCccccccccCCceEEECC-CCHHHHHHHHHhcC-CCEEEEcCC
Confidence            7999999665 99888777778988988885    33344455555555554332 22234656665554 999999886


Q ss_pred             C
Q 021311          207 G  207 (314)
Q Consensus       207 ~  207 (314)
                      .
T Consensus        75 P   75 (256)
T TIGR00715        75 P   75 (256)
T ss_pred             H
Confidence            4

This enzyme was found to be a monomer by gel filtration.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.96  E-value=0.21  Score=37.69  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=28.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      +|+|.|+ |++|...+..+...|...+.+++.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            4899999 9999999999999999888888764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=94.96  E-value=0.062  Score=43.28  Aligned_cols=106  Identities=15%  Similarity=0.151  Sum_probs=63.7

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHH----HhCCCcEEEecCh-hhHHHHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKL----KGLGADEVFTESQ-LEVKNVK  189 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~~~-~~~~~i~  189 (314)
                      ..+.+...-++||-+|.  ..|+.++.+|+.+  +.+++++-.    ++++.+.+    +..|...-++... +..+.+.
T Consensus        38 ~~l~~~~~~k~vLEIGt--~~GySal~la~~l~~~g~i~tiE~----~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~  111 (205)
T PF01596_consen   38 QMLVRLTRPKRVLEIGT--FTGYSALWLAEALPEDGKITTIEI----DPERAEIARENFRKAGLDDRIEVIEGDALEVLP  111 (205)
T ss_dssp             HHHHHHHT-SEEEEEST--TTSHHHHHHHHTSTTTSEEEEEES----SHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred             HHHHHhcCCceEEEecc--ccccHHHHHHHhhcccceEEEecC----cHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence            33445556689999996  6799999999876  455555552    55555555    4455432121111 1123344


Q ss_pred             HHhcC--CCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEcC
Q 021311          190 GLLAN--LPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       190 ~~~~~--~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g~  228 (314)
                      ++...  .+.||.||--+.-..    +..++++|++||.++.=..
T Consensus       112 ~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  112 ELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             HHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             HHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence            44332  235999976555432    3778899999999987653

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.95  E-value=0.28  Score=41.59  Aligned_cols=98  Identities=18%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc----CCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHR----GIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~----g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      ...|+++...+..+....---.|++++|.|.+..+|.=+..++...    +++|.++-..   +                
T Consensus       135 ~~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---T----------------  195 (293)
T PRK14185        135 CFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---S----------------  195 (293)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---C----------------
Confidence            4567777777777766332347999999999999999999999877    5666655421   1                


Q ss_pred             ecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          179 TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       179 ~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .   .+.+.+.   ..|+++-++|.+.+- --+++++|..++.+|...
T Consensus       196 ----~---nl~~~~~---~ADIvIsAvGkp~~i-~~~~vk~gavVIDvGin~  236 (293)
T PRK14185        196 ----K---NLKKECL---EADIIIAALGQPEFV-KADMVKEGAVVIDVGTTR  236 (293)
T ss_pred             ----C---CHHHHHh---hCCEEEEccCCcCcc-CHHHcCCCCEEEEecCcc
Confidence                1   1222232   399999999987762 247899999999999543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.95  E-value=0.16  Score=39.90  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      +|+|.|+ |++|...++.+...|...+.++|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4899999 99999999888889998888887643

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.91  E-value=0.13  Score=43.79  Aligned_cols=76  Identities=9%  Similarity=-0.008  Sum_probs=45.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcE-EEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADE-VFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~-~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+++++|+|+ |+.+.+++..+...|++.+.++..   +.++.+ .+..++... +....  ..+++.....   .+|+|
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nR---t~~ka~~La~~~~~~~~~~~~~--~~~~~~~~~~---~~DiV  194 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINR---NPDKLSRLVDLGVQVGVITRLE--GDSGGLAIEK---AAEVL  194 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHHhhhcCcceecc--chhhhhhccc---CCCEE
Confidence            5789999999 999999998888999976666643   444433 334443211 11011  0011211111   49999


Q ss_pred             EecCCCc
Q 021311          202 FNCVGGN  208 (314)
Q Consensus       202 ~d~~g~~  208 (314)
                      ++|++..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9998764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=94.90  E-value=0.079  Score=42.73  Aligned_cols=103  Identities=19%  Similarity=0.248  Sum_probs=65.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC----cEE--EecC----hhhHHHHHHHhcC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA----DEV--FTES----QLEVKNVKGLLAN  194 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~----~~~--~~~~----~~~~~~i~~~~~~  194 (314)
                      |++++++|+.|++|++....+...|+.+.++-+    +.++.+...+|.+    ..+  +.++    .+..+..++....
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~----~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~   80 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDD----SEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT   80 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehh----hhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence            899999999999999999888888998888875    4444444333322    111  1222    1122223333334


Q ss_pred             CCCCcEEEecCCCcc------------------HHHHHHhc-----ccCCEEEEEcCCCC
Q 021311          195 LPEPALGFNCVGGNS------------------ASKVLKFL-----SQGGTMVTYGGMSK  231 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~------------------~~~~~~~l-----~~~G~~v~~g~~~~  231 (314)
                      .|.+|+.+|.+|-..                  ...+++.+     .++|-+|.+++..+
T Consensus        81 fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~G  140 (261)
T KOG4169|consen   81 FGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAG  140 (261)
T ss_pred             hCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccc
Confidence            446999999998421                  12344444     36799999987654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.89  E-value=0.17  Score=45.13  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.+++.+
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5678999999 9999999999999999888888764

>PLN02583 cinnamoyl-CoA reductase

Probab=94.89  E-value=0.3  Score=41.87  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++|||+|++|.+|..++..+...|.+|+++++.
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~   39 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK   39 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            356799999999999999999998999999988863

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=94.89  E-value=0.84  Score=40.45  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             hcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          120 TTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       120 ~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      .+. -.|.+|.|.|- |.+|+.+++.+...|++++++.+.+
T Consensus       201 ~g~~l~G~rVaVQG~-GNVg~~aa~~l~~~GAkvva~sds~  240 (411)
T COG0334         201 LGDDLEGARVAVQGF-GNVGQYAAEKLHELGAKVVAVSDSK  240 (411)
T ss_pred             cCCCcCCCEEEEECc-cHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            444 48999999999 9999999999998899999999764

>PLN02427 UDP-apiose/xylose synthase

Probab=94.88  E-value=0.2  Score=44.77  Aligned_cols=76  Identities=12%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCC------cEEEecChhhHHHHHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGA------DEVFTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~------~~~~~~~~~~~~~i~~~~~~~g  196 (314)
                      ...+|||+|++|.+|..+++.+... |.+++++.+.    .++...+...+.      ...+..+-.+.+.+.+...+  
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~----~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~--   86 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVY----NDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM--   86 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecC----chhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc--
Confidence            3467999999999999999888777 5788777642    223333322221      11222221222344444433  


Q ss_pred             CCcEEEecCC
Q 021311          197 EPALGFNCVG  206 (314)
Q Consensus       197 ~~d~v~d~~g  206 (314)
                       +|+||.+++
T Consensus        87 -~d~ViHlAa   95 (386)
T PLN02427         87 -ADLTINLAA   95 (386)
T ss_pred             -CCEEEEccc
Confidence             999999997

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.88  E-value=0.28  Score=42.33  Aligned_cols=89  Identities=19%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+|.|+|+ |.+|.+.+..++..|.  +++++. .   ++++.+.+++.|.......+   .+.   ...   ..|+|+.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~d-r---~~~~~~~a~~~g~~~~~~~~---~~~---~~~---~aDvVii   72 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGAD-R---SAETRARARELGLGDRVTTS---AAE---AVK---GADLVIL   72 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEE-C---CHHHHHHHHhCCCCceecCC---HHH---Hhc---CCCEEEE
Confidence            68999998 9999999988888885  455444 2   56677777777753211111   111   111   3899999


Q ss_pred             cCCCccH----HHHHHhcccCCEEEEEcC
Q 021311          204 CVGGNSA----SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       204 ~~g~~~~----~~~~~~l~~~G~~v~~g~  228 (314)
                      |+.....    ......++++..++.+|+
T Consensus        73 avp~~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         73 CVPVGASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            9987543    333445677777776664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.85  E-value=0.38  Score=33.34  Aligned_cols=86  Identities=20%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC---CcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG---IHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g---~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +|.++|+ |.+|.+.+.-+...|   .+++.++..   ++++.+.+ ++++.........   +.+.       ..|+||
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r---~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~advvi   66 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSR---SPEKAAELAKEYGVQATADDNE---EAAQ-------EADVVI   66 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEES---SHHHHHHHHHHCTTEEESEEHH---HHHH-------HTSEEE
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccC---cHHHHHHHHHhhccccccCChH---Hhhc-------cCCEEE
Confidence            4677888 999999999888888   677755333   56655554 6677543321111   1121       299999


Q ss_pred             ecCCCccHHHHHHh---cccCCEEEEE
Q 021311          203 NCVGGNSASKVLKF---LSQGGTMVTY  226 (314)
Q Consensus       203 d~~g~~~~~~~~~~---l~~~G~~v~~  226 (314)
                      -|+-...+...++.   ..++..+|.+
T Consensus        67 lav~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   67 LAVKPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             E-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             EEECHHHHHHHHHHHhhccCCCEEEEe
Confidence            99998877555544   4455566554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.84  E-value=0.21  Score=42.30  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=54.7

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcE----EEecChhhHHHHHHHhcCCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADE----VFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~----~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      .++++++|.|+ |+.+.+++..+...|+..+.++..   +.++. +.++.++...    .....+.        .... .
T Consensus       124 ~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NR---t~~ra~~La~~~~~~~~~~~~~~~~~~--------~~~~-~  190 (283)
T COG0169         124 VTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNR---TRERAEELADLFGELGAAVEAAALADL--------EGLE-E  190 (283)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeC---CHHHHHHHHHHhhhccccccccccccc--------cccc-c
Confidence            45899999999 999999999999999866666643   34443 3333444221    1111110        0010 2


Q ss_pred             CcEEEecCCCccHHH------HHHhcccCCEEEEEc
Q 021311          198 PALGFNCVGGNSASK------VLKFLSQGGTMVTYG  227 (314)
Q Consensus       198 ~d~v~d~~g~~~~~~------~~~~l~~~G~~v~~g  227 (314)
                      +|+++||++-.....      ...++++.-.+..+-
T Consensus       191 ~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~v  226 (283)
T COG0169         191 ADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVV  226 (283)
T ss_pred             cCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEec
Confidence            899999997533211      145566666665655

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.82  E-value=0.17  Score=44.81  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.+++.+
T Consensus        40 ~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3578999999 9999999999999999888888764

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.82  E-value=0.27  Score=41.93  Aligned_cols=93  Identities=16%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCC----CcEEEecChhhHHHHHHHhcCCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLG----ADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg----~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      ..+++++|+|+ |+.|.+++..+...|++.+.+++.   +.++.+ .++.++    ...+....     .+.+...   .
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR---~~~ka~~la~~l~~~~~~~~~~~~~-----~~~~~~~---~  192 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDV---DPARAAALADELNARFPAARATAGS-----DLAAALA---A  192 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHHHHhhCCCeEEEecc-----chHhhhC---C
Confidence            35689999999 999999999999999976766654   333333 333332    11222111     1111111   3


Q ss_pred             CcEEEecCCCcc-----HHHHHHhcccCCEEEEEc
Q 021311          198 PALGFNCVGGNS-----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       198 ~d~v~d~~g~~~-----~~~~~~~l~~~G~~v~~g  227 (314)
                      +|+|++|+....     .....+.+++...++.+.
T Consensus       193 aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~Div  227 (284)
T PRK12549        193 ADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIV  227 (284)
T ss_pred             CCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEee
Confidence            999999964321     111124466666555554

>PLN02476 O-methyltransferase

Probab=94.81  E-value=0.27  Score=41.56  Aligned_cols=107  Identities=11%  Similarity=0.104  Sum_probs=64.4

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHH----HhCCCcEEEecChhh-HHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKL----KGLGADEVFTESQLE-VKNV  188 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~~~~~-~~~i  188 (314)
                      +..+.+..+.++||=+|.  ..|..++.+|+.++  .+++ +++.   +++..+.+    +..|..+-+.....+ .+.+
T Consensus       110 L~~L~~~~~ak~VLEIGT--~tGySal~lA~al~~~G~V~-TiE~---d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L  183 (278)
T PLN02476        110 LAMLVQILGAERCIEVGV--YTGYSSLAVALVLPESGCLV-ACER---DSNSLEVAKRYYELAGVSHKVNVKHGLAAESL  183 (278)
T ss_pred             HHHHHHhcCCCeEEEecC--CCCHHHHHHHHhCCCCCEEE-EEEC---CHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            444566778899999986  56888888888764  3444 4443   45554444    456654322222111 1233


Q ss_pred             HHHhc--CCCCCcEEEecCCCc----cHHHHHHhcccCCEEEEEcC
Q 021311          189 KGLLA--NLPEPALGFNCVGGN----SASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       189 ~~~~~--~~g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g~  228 (314)
                      .++..  ..+.||.||--+...    .++.+++.|++||.++.=..
T Consensus       184 ~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        184 KSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             HHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            33321  123599998766643    24788899999999886543

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.81  E-value=0.34  Score=41.01  Aligned_cols=98  Identities=14%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc----CCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHR----GIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~----g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      ..+|+++...+..+....---.|++++|.|.+..+|.=+..++...    +++|+++-..   +                
T Consensus       131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---T----------------  191 (287)
T PRK14181        131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---S----------------  191 (287)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---C----------------
Confidence            4667777777777766332346999999999999999999999887    6666544311   1                


Q ss_pred             ecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          179 TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       179 ~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .   .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       192 ----~---~l~~~~~---~ADIvV~AvG~p~~-i~~~~ik~GavVIDvGin~  232 (287)
T PRK14181        192 ----E---NLTEILK---TADIIIAAIGVPLF-IKEEMIAEKAVIVDVGTSR  232 (287)
T ss_pred             ----C---CHHHHHh---hCCEEEEccCCcCc-cCHHHcCCCCEEEEecccc
Confidence                1   1222232   39999999998765 2247889999999999543

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=94.80  E-value=0.16  Score=41.73  Aligned_cols=80  Identities=24%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCCcEE
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEPALG  201 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~d~v  201 (314)
                      +||+|++|.+|..++..+...|++++.+.+..... +...+.+...+... .+  |..+. .++. +.+.....+++|.+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL   80 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            58999999999999988888899988887642101 11122334445332 22  22222 2222 22222222359999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      +.++|.
T Consensus        81 i~~ag~   86 (239)
T TIGR01830        81 VNNAGI   86 (239)
T ss_pred             EECCCC
Confidence            999985

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.78  E-value=0.32  Score=41.12  Aligned_cols=96  Identities=11%  Similarity=0.127  Sum_probs=68.5

Q ss_pred             cccccHHHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHH--cCCcEEEEecCCCCcHHHHHHHHhCCCcEEEec
Q 021311          104 TIIVNPLTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARH--RGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE  180 (314)
Q Consensus       104 ~~~~~~~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~--~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~  180 (314)
                      ..|+++...+..+.. -++ -.|++++|.|.+..+|.=+..++..  .+++|.++-..   +                  
T Consensus       137 ~~PcTp~av~~ll~~-~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---T------------------  194 (284)
T PRK14193        137 PLPCTPRGIVHLLRR-YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---T------------------  194 (284)
T ss_pred             CCCCCHHHHHHHHHH-hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---C------------------
Confidence            467777777777765 344 3699999999999999998888877  67777555421   1                  


Q ss_pred             ChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       181 ~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                        .   .+.+.+.   ..|+++-++|.+.+ ---+++++|..++.+|...
T Consensus       195 --~---~l~~~~k---~ADIvV~AvGkp~~-i~~~~ik~GavVIDvGin~  235 (284)
T PRK14193        195 --R---DLAAHTR---RADIIVAAAGVAHL-VTADMVKPGAAVLDVGVSR  235 (284)
T ss_pred             --C---CHHHHHH---hCCEEEEecCCcCc-cCHHHcCCCCEEEEccccc
Confidence              1   1222222   39999999998765 2246789999999999544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		1e-68
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		1e-68
1n9g_A	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		6e-42
1h0k_A	364	Enoyl Thioester Reductase 2 Length = 364		7e-42
1n9g_B	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		2e-41
1gu7_A	364	Enoyl Thioester Reductase From Candida Tropicalis L		2e-41
1gyr_A	364	Mutant Form Of Enoyl Thioester Reductase From Candi		2e-40
3gms_A	340	Crystal Structure Of Putative Nadph:quinone Reducta		1e-11
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		4e-11
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		3e-09
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		3e-08
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		3e-08
3pi7_A	349	Crystal Structure Of A Putative Nadph:quinone Reduc		7e-08
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		3e-07
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-05
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-05
2j3h_A	345	Crystal Structure Of Arabidopsis Thaliana Double Bo		1e-04
3slk_A	795	Structure Of Ketoreductase And Enoylreductase Didom		3e-04
1pqw_A	198	Putative Enoyl Reductase Domain Of Polyketide Synth		4e-04
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		4e-04
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		7e-04
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		7e-04

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/305 (42%), Positives = 186/305 (60%), Gaps = 4/305 (1%)
Query: 1   MIELPPVE---VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXX 57
           ++EL  +E   V+ +DV VKMLAAPINPSDIN I+G Y + P++P               
Sbjct: 28  VVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVG 87
Query: 58  XXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
              T L PGDWVIP+    GTW++  V  +    +V  D P++ AAT+ VNP TA RML 
Sbjct: 88  SNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLM 147
Query: 118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           DF  L  GDS++QN + S VGQ +IQIA   G+ +IN++RDR    +  ++LK LGA+ V
Sbjct: 148 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHV 207
Query: 178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
            TE +L    +K    ++P+P L  NCVGG S++++L+ L++GGTMVTYGGM+K+P+  S
Sbjct: 208 ITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVAS 267
Query: 238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTA 296
            S  IFKDL L+GFWL +W       + + +I  L  L R G+L       VP  ++Q+A
Sbjct: 268 VSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSA 327
Query: 297 LSKAL 301
           L  ++
Sbjct: 328 LEASM 332

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/305 (42%), Positives = 186/305 (60%), Gaps = 4/305 (1%)
Query: 1   MIELPPVE---VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXX 57
           ++EL  +E   V+ +DV VKMLAAPINPSDIN I+G Y + P++P               
Sbjct: 41  VVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVG 100
Query: 58  XXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
              T L PGDWVIP+    GTW++  V  +    +V  D P++ AAT+ VNP TA RML 
Sbjct: 101 SNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLM 160
Query: 118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           DF  L  GDS++QN + S VGQ +IQIA   G+ +IN++RDR    +  ++LK LGA+ V
Sbjct: 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHV 220
Query: 178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
            TE +L    +K    ++P+P L  NCVGG S++++L+ L++GGTMVTYGGM+K+P+  S
Sbjct: 221 ITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVAS 280
Query: 238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTA 296
            S  IFKDL L+GFWL +W       + + +I  L  L R G+L       VP  ++Q+A
Sbjct: 281 VSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSA 340
Query: 297 LSKAL 301
           L  ++
Sbjct: 341 LEASM 345

>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 151/296 (51%), Gaps = 27/296 (9%)
Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXX---------XXXXXXXXTR 62
           N+V VK L +PINPSDIN+I+GVYP +P                              + 
Sbjct: 56  NEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGSNVSS 115
Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS-----------PMEYAATIIVNPLT 111
           L  GDWVIPS  + GTW+++ + +   + K+   +            +   ATI VNPLT
Sbjct: 116 LEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT 175
Query: 112 ALRMLEDFTTLNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
           A  ML  +  L  G D  +QNG TS VG+   QI +    +SI++IRDR   DE    LK
Sbjct: 176 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK 235
Query: 171 GLGADEVFTESQLEVKNVKGLLANL-----PEPALGFNCVGGNSASKVLKFLSQGGTMVT 225
            LGA +V TE Q   K     +         E  L  NCVGG S++ + + L+  G M+T
Sbjct: 236 ELGATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLT 295
Query: 226 YGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 281
           YGGMS +P+T+ TS +IFK+ +  GFW+ + L + K  +  + ++ ++    EGKL
Sbjct: 296 YGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKT-STLNQIIAWYEEGKL 350

>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2 Length = 364

Iteration: 1
 Score =  167 bits (423), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 150/296 (50%), Gaps = 27/296 (9%)
Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXX---------XXXXXXXXTR 62
           N+V VK L +PINPSDIN+I+GVYP +P                              + 
Sbjct: 34  NEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGSNVSS 93
Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS-----------PMEYAATIIVNPLT 111
           L  GDWVIPS  + GTW+++ + +   + K+   +            +   ATI VNPLT
Sbjct: 94  LEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT 153
Query: 112 ALRMLEDFTTLNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
           A  ML  +  L  G D  +QNG TS VG+   QI +    +SI++IRDR   DE    LK
Sbjct: 154 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK 213
Query: 171 GLGADEVFTESQLEVKNVKGLLANL-----PEPALGFNCVGGNSASKVLKFLSQGGTMVT 225
            LGA +V TE Q   K     +         E  L  NCVGG S++ + + L+  G M+T
Sbjct: 214 ELGATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLT 273
Query: 226 YGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 281
           YGGMS +P+T+ TS +IFK+ +  GFW+ + L + K  +   + + ++    EGKL
Sbjct: 274 YGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTL-NQIIAWYEEGKL 328

>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 151/296 (51%), Gaps = 27/296 (9%)
Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXX---------XXXXXXXXTR 62
           N+V VK L +P+NPSDIN+I+GVYP +P                              + 
Sbjct: 56  NEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSS 115
Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS-----------PMEYAATIIVNPLT 111
           L  GDWVIPS  + GTW+++ + +   + K+   +            +   ATI VNPLT
Sbjct: 116 LEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT 175
Query: 112 ALRMLEDFTTLNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
           A  ML  +  L  G D  +QNG TS VG+   QI +    +SI++IRDR   DE    LK
Sbjct: 176 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK 235
Query: 171 GLGADEVFTESQLEVKNVKGLLANL-----PEPALGFNCVGGNSASKVLKFLSQGGTMVT 225
            LGA +V TE Q   +     +         E  L  NCVGG S++ + + L+  G M+T
Sbjct: 236 ELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLT 295
Query: 226 YGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 281
           YGGMS +P+T+ TS +IFK+ +  GFW+ + L + K  +  + ++ ++    EGKL
Sbjct: 296 YGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKT-STLNQIIAWYEEGKL 350

>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 151/296 (51%), Gaps = 27/296 (9%)
Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXX---------XXXXXXXXTR 62
           N+V VK L +P+NPSDIN+I+GVYP +P                              + 
Sbjct: 34  NEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSS 93
Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS-----------PMEYAATIIVNPLT 111
           L  GDWVIPS  + GTW+++ + +   + K+   +            +   ATI VNPLT
Sbjct: 94  LEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT 153
Query: 112 ALRMLEDFTTLNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
           A  ML  +  L  G D  +QNG TS VG+   QI +    +SI++IRDR   DE    LK
Sbjct: 154 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK 213
Query: 171 GLGADEVFTESQLEVKNVKGLLANL-----PEPALGFNCVGGNSASKVLKFLSQGGTMVT 225
            LGA +V TE Q   +     +         E  L  NCVGG S++ + + L+  G M+T
Sbjct: 214 ELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLT 273
Query: 226 YGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 281
           YGGMS +P+T+ TS +IFK+ +  GFW+ + L + K  +  + ++ ++    EGKL
Sbjct: 274 YGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKT-STLNQIIAWYEEGKL 328

>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 150/296 (50%), Gaps = 27/296 (9%)
Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXX---------XXXXXXXXTR 62
           N+V VK L +P+NPSDIN+I+GV P +P                              + 
Sbjct: 34  NEVIVKTLGSPVNPSDINQIQGVNPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSS 93
Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS-----------PMEYAATIIVNPLT 111
           L  GDWVIPS  + GTW+++ + +   + K+   +            +   ATI VNPLT
Sbjct: 94  LEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLT 153
Query: 112 ALRMLEDFTTLNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
           A  ML  +  L  G D  +QNG TS VG+   QI +    +SI++IRDR   DE    LK
Sbjct: 154 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK 213
Query: 171 GLGADEVFTESQLEVKNVKGLLANL-----PEPALGFNCVGGNSASKVLKFLSQGGTMVT 225
            LGA +V TE Q   +     +         E  L  NCVGG S++ + + L+  G M+T
Sbjct: 214 ELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLT 273
Query: 226 YGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL 281
           YGGMS +P+T+ TS +IFK+ +  GFW+ + L + K  +  + ++ ++    EGKL
Sbjct: 274 YGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKT-STLNQIIAWYEEGKL 328

>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From Bacillus Thuringiensis Length = 340

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 14/279 (5%)
Query: 9   VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTRLAPGDW 68
           +K+N+V V+ML  PINPSD+  I G Y  R  +P                  +R   G  
Sbjct: 30  LKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKR 89
Query: 69  VIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEY-AATIIVNPLTALRMLEDFTTLNSGDS 127
           V+P     GTWQ Y VK  + +     DS  ++ AA + +NPLTA     +   L   D 
Sbjct: 90  VLPL-RGEGTWQEY-VKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDV 147
Query: 128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKN 187
           ++ N   S +G    Q+++      I + R+    ++  E+L  LGA  V   S   +  
Sbjct: 148 LLVNACGSAIGHLFAQLSQILNFRLIAVTRN----NKHTEELLRLGAAYVIDTSTAPLYE 203
Query: 188 VKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT---VSTSAFIFK 244
               L N        + +GG   +++   L   G  +T G +S   +    + T A +  
Sbjct: 204 TVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHA 263
Query: 245 DLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY 283
           ++    F L+ W       + +    +L+ L    +L++
Sbjct: 264 NI----FHLRHWNDEVSPYKWQETFRHLIRLVENEQLRF 298

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 10/246 (4%)
Query: 10  KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTRLAPGDWV 69
           K++ V +K+ A  +NP +     G Y  +P +P                  +    GD V
Sbjct: 56  KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115
Query: 70  IPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIV 129
             S   SG +  Y +      +K+ +    +  A I +   TA R L     + +G+S++
Sbjct: 116 FTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVL 175
Query: 130 QNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK 189
            +GA+  VG    QIAR  G+     I   AG++E ++ +   GA EVF     EV  + 
Sbjct: 176 VHGASGGVGLAACQIARAYGLK----ILGTAGTEEGQKIVLQNGAHEVFNHR--EVNYID 229
Query: 190 GLLANLPEPALG--FNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLS 247
            +   + E  +      +   + SK L  LS GG ++  G  S+  I ++    + K+ S
Sbjct: 230 KIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVG--SRGTIEINPRDTMAKESS 287
Query: 248 LKGFWL 253
           + G  L
Sbjct: 288 IIGVTL 293

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 30/240 (12%)
Query: 79  WQSYVVKDQSVWHKVSKD----SPMEYAATIIVNP-LTALRMLEDFTTLNSGDSIVQNGA 133
           W ++ + D     K+  +     P+  A   I  P LTA   L +   +  G++++ + A
Sbjct: 95  WTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAA 154
Query: 134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLA 193
              VG  + QIA+ +G   +      AGSDE    LK +G D  F       K V  L  
Sbjct: 155 AGAVGSVVGQIAKLKGCKVVG----AAGSDEKIAYLKQIGFDAAFN-----YKTVNSLEE 205
Query: 194 NLPEPA-LGFNC----VGGNSASKVLKFLSQGGTMV------TYGGMSKKPITVSTSAFI 242
            L + +  G++C    VGG   + VL  +   G +        Y  M + P   S  + I
Sbjct: 206 ALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESII 265
Query: 243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVP-FNNFQTALSKAL 301
           +K L ++GF + +W    +    R+++ ++L    EGK++Y   +   F N   A  + L
Sbjct: 266 YKQLRIEGFIVYRWQGDVREKALRDLMKWVL----EGKIQYHEHVTKGFENMPAAFIEML 321

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKD----SPMEYAATIIVNP-LTALRMLE 117
           L  G  V+ SP     W ++ + D     K+  +     P+  A   +  P LTA   L 
Sbjct: 78  LPKGTIVLASPG----WTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLL 133
Query: 118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           +   +  G++++ N A   VG  + QIA+ +G   +  +    GSDE    L+ LG D V
Sbjct: 134 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAV----GSDEKVAYLQKLGFDVV 189
Query: 178 FTESQLEVKNVKGLLANLPEPA-LGFNC----VGGNSASKVLKFLSQGGTMVTYGGMSKK 232
           F       K V+ L   L + +  G++C    VGG  ++ V+  + + G +   G +S  
Sbjct: 190 FN-----YKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTY 244
Query: 233 PITVSTSA------FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME 286
             T            I+++L ++ F + +W    +    ++++ ++L    EGK++Y   
Sbjct: 245 NRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVL----EGKIQYKEY 300
Query: 287 LVP-FNNFQTALSKAL 301
           ++  F N   A    L
Sbjct: 301 IIEGFENMPAAFMGML 316

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKD----SPMEYAATIIVNP-LTALRMLE 117
           L  G  V+ SP     W ++ + D     K+  +     P+  A   +  P LTA   L 
Sbjct: 99  LPKGTIVLASPG----WTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLL 154
Query: 118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           +   +  G++++ N A   VG  + QIA+ +G   +  +    GSDE    L+ LG D V
Sbjct: 155 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAV----GSDEKVAYLQKLGFDVV 210
Query: 178 FTESQLEVKNVKGLLANLPEPA-LGFNC----VGGNSASKVLKFLSQGGTMVTYGGMSKK 232
           F       K V+ L   L + +  G++C    VGG  ++ V+  + + G +   G +S  
Sbjct: 211 FN-----YKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTY 265
Query: 233 PITVSTSA------FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME 286
             T            I+++L ++ F + +W    +    ++++ ++L    EGK++Y   
Sbjct: 266 NRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVL----EGKIQYKEY 321
Query: 287 LVP-FNNFQTALSKAL 301
           ++  F N   A    L
Sbjct: 322 IIEGFENMPAAFMGML 337

>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase (Mll3093) From Mesorhizobium Loti At 1.71 A Resolution Length = 349

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 6/158 (3%)
Query: 100 EYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR 159
           E  A  IVNPLTA+    D        + V     S + + II +A+  G   I  +R  
Sbjct: 141 EDGAAXIVNPLTAIAXF-DIVKQEGEKAFVXTAGASQLCKLIIGLAKEEGFRPIVTVR-- 197
Query: 160 AGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQ 219
              DE    LK +GA  V  E   + +     +    +P +  + V G  AS +     +
Sbjct: 198 --RDEQIALLKDIGAAHVLNEKAPDFEATLREVXKAEQPRIFLDAVTGPLASAIFNAXPK 255
Query: 220 GGTMVTYGGMSKKPITVSTSA-FIFKDLSLKGFWLQKW 256
               + YG +      +      IF+   ++GFWL +W
Sbjct: 256 RARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEW 293

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 119/307 (38%), Gaps = 42/307 (13%)
Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTR 62
           +LP  E    +V V++ AA +N  D+   +GV   +  +P                    
Sbjct: 19  DLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEG 78
Query: 63  LAPGDWVIPSPPSS--------------------------GTWQSYVVKDQSVWHKVSKD 96
            APGD V+ +P  S                          GT+  YVV  ++      K+
Sbjct: 79  FAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKN 138
Query: 97  SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII 156
              E AA I +  LTA +M+ D   +  GD ++   A S V    IQIA+  G   I   
Sbjct: 139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIAT- 197
Query: 157 RDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLK 215
              AGS++   + K LGADE    +  +  K V+ L        +  +  G      V+K
Sbjct: 198 ---AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKV-VDHTGALYFEGVIK 253
Query: 216 FLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCL 275
             + GG +   G  S    T+  +   ++ LS+        L S  A++ R  +  +L  
Sbjct: 254 ATANGGRIAIAGASSGYEGTLPFAHVFYRQLSI--------LGSTMASKSR--LFPILRF 303
Query: 276 AREGKLK 282
             EGKLK
Sbjct: 304 VEEGKLK 310

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 31/252 (12%)
Query: 11  ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTRLAPG---- 66
           E +V +K+ A+ +N +D+ + +G Y   P                       L PG    
Sbjct: 33  EGEVLLKVAASALNRADLMQRQGQYDPPPGA-------SNILGLEASGHVAELGPGCQGH 85
Query: 67  ----DWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
               D  +   P  G  Q YV   + +   + +   +  AA I    LTA ++L     +
Sbjct: 86  WKIGDTAMALLPGGGQAQ-YVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNV 144
Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE-- 180
            +GD ++ +   S VG   IQ+ R  G  +I ++   AGS +  +  + LGA   F    
Sbjct: 145 QAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLV--TAGSQKKLQMAEKLGAAAGFNYKK 200
Query: 181 ---SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
              S+  +K  KG   NL       +C+GG+   K +  L+  G  V YG M    I   
Sbjct: 201 EDFSEATLKFTKGAGVNLI-----LDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGP 255
Query: 238 T-SAFIFKDLSL 248
             S  +FK  SL
Sbjct: 256 LFSKLLFKRGSL 267

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 31/252 (12%)
Query: 11  ENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTRLAPG---- 66
           E +V +K+ A+ +N +D+ + +G Y   P                       L PG    
Sbjct: 49  EGEVLLKVAASALNRADLMQRQGQYDPPPGA-------SNILGLEASGHVAELGPGCQGH 101
Query: 67  ----DWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
               D  +   P  G  Q YV   + +   + +   +  AA I    LTA ++L     +
Sbjct: 102 WKIGDTAMALLPGGGQAQ-YVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNV 160
Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE-- 180
            +GD ++ +   S VG   IQ+ R  G  +I ++   AGS +  +  + LGA   F    
Sbjct: 161 QAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLV--TAGSQKKLQMAEKLGAAAGFNYKK 216
Query: 181 ---SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
              S+  +K  KG   NL       +C+GG+   K +  L+  G  V YG M    I   
Sbjct: 217 EDFSEATLKFTKGAGVNLI-----LDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGP 271
Query: 238 T-SAFIFKDLSL 248
             S  +FK  SL
Sbjct: 272 LFSKLLFKRGSL 283

>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond Reductase (At5g16970)-Apo Form Length = 345

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 12/222 (5%)
Query: 96  DSPMEYAATIIVNP-LTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 154
           D P+ Y   ++  P +TA     +  +   G+++  + A+  VGQ + Q+A+  G + + 
Sbjct: 126 DVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVG 185
Query: 155 IIRDRAGSDEAKEKLKG-LGADEVFTESQLEVKNVKGLLANLPEPA-LGFNCVGGNSASK 212
                AGS E  + LK   G D+ F   + E      L    P    + F  VGG     
Sbjct: 186 ----SAGSKEKVDLLKTKFGFDDAFNYKE-ESDLTAALKRCFPNGIDIYFENVGGKMLDA 240
Query: 213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYL 272
           VL  ++  G +   G +S+  +          ++  K   +Q ++ S+   +    ++++
Sbjct: 241 VLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFV 300
Query: 273 LCLAREGKLKYDMELVPFNNFQTALSKALGL-HGSQ-PKQVI 312
           L   REGK+ Y  ++   +  + A    +GL HG    KQV+
Sbjct: 301 LPHIREGKITYVEDVA--DGLEKAPEALVGLFHGKNVGKQVV 340

>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain From Modular Polyketide Synthase Length = 795

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
           T LAPGD V+   P +  +    V D  +  ++        AA++ +  LTA   L D  
Sbjct: 284 TGLAPGDRVMGMIPKA--FGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLA 341
Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRG 149
            L  G+S++ + A   VG   IQ+ARH G
Sbjct: 342 GLRPGESLLVHSAAGGVGMAAIQLARHLG 370

>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase Length = 198

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 102 AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG 161
           AAT  V  LTA   L +   L+ G+ ++ + AT  VG   + IA+  G      I   AG
Sbjct: 16  AATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR----IYTTAG 71
Query: 162 SDEAKEKLKGLGADEV-------FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVL 214
           SD  +E L  LG + V       F +  LE+ +  G+   L       N + G +  + +
Sbjct: 72  SDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVL-------NSLAGEAIQRGV 124
Query: 215 KFLSQGGTMVTYGGMSKKPITVSTS---AFIFKDLSLKGFWLQKWLSSEKATECRNMIDY 271
           + L+ GG  +  G   KK +    S   A + K  S     L   L  + A   R ++ +
Sbjct: 125 QILAPGGRFIELG---KKDVYADASLGLAALAKSASFSVVDLDLNLKLQPA-RYRQLLQH 180
Query: 272 LLCLAREGKLKYDMELVPFNNF 293
           +L    +GKL    E++P   F
Sbjct: 181 ILQHVADGKL----EVLPVTAF 198

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 28/260 (10%)
Query: 12  NDVCVKMLAAPINP---SDINRIEGVY--PVRPKVPXXXXXXXXXXXXXXXXXXTRLAPG 66
           NDV VK L    +P   S + +IEG Y     P  P                   +   G
Sbjct: 41  NDVVVKNLYLSCDPYMRSRMRKIEGSYVESFAPGSPITGYGVAKVLESGD----PKFQKG 96
Query: 67  DWVIPSPPSSGTWQSY--VVKDQSVWHKVSKDSPMEYAATIIVNP-LTALRMLEDFTTLN 123
           D V         W+ Y  +   Q+++    KD P+ Y   I+  P +TA     +  +  
Sbjct: 97  DLVW----GMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGILGMPGMTAYAGFHEVCSPK 152
Query: 124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEVFTESQ 182
            G+++  + A+  VGQ + Q A+  G + +      AGS E  + LK   G DE F   +
Sbjct: 153 KGETVFVSAASGAVGQLVGQFAKMLGCYVVG----SAGSKEKVDLLKSKFGFDEAFNYKE 208
Query: 183 LEVKNVKGLLANLPEPA-LGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS-- 239
            E      L    P+   + F  VGG     VL  +   G +   G +S+  +  +    
Sbjct: 209 -EQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVH 267
Query: 240 ---AFIFKDLSLKGFWLQKW 256
                I K + ++GF +  +
Sbjct: 268 NLFCLITKRIRMEGFLVFDY 287

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 26/239 (10%)
Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXXXXTR 62
           + P   + E ++ +K     +N  +    +G+YP     P                  T 
Sbjct: 27  DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK--PYVLGREASGTVVAKGKGVTN 84
Query: 63  LAPGDWVIPSPPSSGTWQSYV-VKDQSVWHKVSK---DSPMEYAATIIVNPLTALRMLED 118
              GD V  +  S+ T+  Y  +  Q    K+ K   D  ++  A  ++  LTAL    +
Sbjct: 85  FEVGDQV--AYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNE 142
Query: 119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF 178
              +  GD ++   A   VG  + Q+ + +G H+I +    A +DE  +  K  GA+ + 
Sbjct: 143 AYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAV----ASTDEKLKIAKEYGAEYLI 198
Query: 179 TESQ-------LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS 230
             S+       L+  N KG+ A+       F+ VG ++    L  L + G  V++G  S
Sbjct: 199 NASKEDILRQVLKFTNGKGVDAS-------FDSVGKDTFEISLAALKRKGVFVSFGNAS 250

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 126/315 (40%), Gaps = 44/315 (13%)
Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV----PXXXXXXXXXXXXXX 56
           +++ P  E ++N   +K+ AA +NP D     G   V  K+    P              
Sbjct: 23  LVDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIEL 82
Query: 57  XXXXTRLAPGDWV-----IPSPPSSGTWQSYVVKD-QSVWHKVSKDSPMEYAATIIVNPL 110
                 +  GD V      P  P    +  YV     ++  K+ K S ++ AA++    L
Sbjct: 83  GSDVNNVNIGDKVXGIAGFPDHPCC--YAEYVCASPDTIIQKLEKLSFLQ-AASLPTAGL 139
Query: 111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
           TAL+ L     +  GD ++ +     VG   IQ+A+ +G   I     R  +      LK
Sbjct: 140 TALQALNQ-AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHA-----FLK 193
Query: 171 GLGADEVFTESQLEVKNVKGLLA-NLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM 229
            LGA++     + +      LLA + P  A+  + VGG+   + +  L + G +V     
Sbjct: 194 ALGAEQCINYHEEDF-----LLAISTPVDAV-IDLVGGDVGIQSIDCLKETGCIV----- 242
Query: 230 SKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVP 289
           S   IT      + K    + F L K  + E+       + YL  L  E KL+ ++  + 
Sbjct: 243 SVPTITAGRVIEVAKQKHRRAFGLLKQFNIEE-------LHYLGKLVSEDKLRIEISRI- 294
Query: 290 FNNFQTALSKALGLH 304
              FQ  LS+A+  H
Sbjct: 295 ---FQ--LSEAVTAH 304

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-116
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-108
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-68
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-67
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	6e-43
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-33
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	8e-33
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-32
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	3e-31
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-31
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-30
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	4e-30
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-29
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-29
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	3e-29
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-28
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-28
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-27
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-27
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	8e-27
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	3e-26
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-25
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	6e-25
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-23
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-23
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-23
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	1e-22
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	3e-22
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-22
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-21
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	3e-21
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	5e-21
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-20
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	3e-20
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	5e-20
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	6e-20
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-19
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-19
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	6e-19
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-18
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	2e-18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	3e-18
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	3e-17
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	1e-16
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-14
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	2e-14
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	5e-14
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-13
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	5e-13
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-12
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	2e-12
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	3e-12
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	3e-12
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-10
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-10
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	6e-09
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	1e-08
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	2e-08
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-08
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	1e-07
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	5e-07
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	6e-07
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-06
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	2e-06
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-06
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	3e-06
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	7e-04

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  337 bits (867), Expect = e-116
 Identities = 143/312 (45%), Positives = 199/312 (63%), Gaps = 2/312 (0%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
            L    V+ +DV VKMLAAPINPSDIN I+G Y + P++PAVGG EGV +V +VGS VT 
Sbjct: 46  NLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTG 105

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
           L PGDWVIP+    GTW++  V  +    +V  D P++ AAT+ VNP TA RML DF  L
Sbjct: 106 LKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQL 165

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ 182
             GDS++QN + S VGQ +IQIA   G+ +IN++RDR    +  ++LK LGA+ V TE +
Sbjct: 166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE 225

Query: 183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFI 242
           L    +K    ++P+P L  NCVGG S++++L+ L++GGTMVTYGGM+K+P+  S S  I
Sbjct: 226 LRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLI 285

Query: 243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKAL 301
           FKDL L+GFWL +W       + + +I  L  L R G+L       VP  ++Q+AL  ++
Sbjct: 286 FKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASM 345

Query: 302 GLHGSQPKQVIK 313
                  KQ++ 
Sbjct: 346 K-PFISSKQILT 356

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  319 bits (819), Expect = e-108
 Identities = 119/342 (34%), Positives = 175/342 (51%), Gaps = 30/342 (8%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP---------KVPAVGGYEGVGE 52
            E+    +  N+V VK L +P+NPSDIN+I+GVYP +P         +  A  G EG+ E
Sbjct: 24  FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFE 83

Query: 53  VYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS-----------PMEY 101
           V  VGS V+ L  GDWVIPS  + GTW+++ + +   + K+   +            +  
Sbjct: 84  VIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQ 143

Query: 102 AATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA 160
            ATI VNPLTA  ML  +  L  G D  +QNG TS VG+   QI +    +SI++IRDR 
Sbjct: 144 GATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 203

Query: 161 GSDEAKEKLKGLGADEVFTESQLE----VKNVKGLLANLPEPA-LGFNCVGGNSASKVLK 215
             DE    LK LGA +V TE Q         +K  +      A L  NCVGG S++ + +
Sbjct: 204 NLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIAR 263

Query: 216 FLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCL 275
            L+  G M+TYGGMS +P+T+ TS +IFK+ +  GFW+ + L + K     + ++ ++  
Sbjct: 264 KLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKE-LKTSTLNQIIAW 322

Query: 276 AREGKLKYDMELVPFNNFQTALSKALGLH---GSQPKQVIKF 314
             EGKL     +    +    L +            KQ+I +
Sbjct: 323 YEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 364

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  215 bits (551), Expect = 2e-68
 Identities = 73/280 (26%), Positives = 117/280 (41%), Gaps = 6/280 (2%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
                 +K+N+V V+ML  PINPSD+  I G Y  R  +P + GYEGVG V +VG+ V+R
Sbjct: 24  YKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSR 83

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              G  V+P     GTWQ YV         +        AA + +NPLTA     +   L
Sbjct: 84  ELIGKRVLPLRG-EGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNL 142

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ 182
              D ++ N   S +G    Q+++      I +      +++  E+L  LGA  V   S 
Sbjct: 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAV----TRNNKHTEELLRLGAAYVIDTST 198

Query: 183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFI 242
             +      L N        + +GG   +++   L   G  +T G +S   +  +     
Sbjct: 199 APLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIVT- 257

Query: 243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
              +    F L+ W       + +    +L+ L    +L+
Sbjct: 258 KAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLR 297

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  213 bits (545), Expect = 2e-67
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 12/285 (4%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGS-AVT 61
            +       + V +K+  A INPSD+  I+G Y          G+EGVG + + G     
Sbjct: 41  RIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYA 100

Query: 62  RLAPGDWVI--PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF 119
           +   G  V       + G+W  Y V + +    +      E  A +IVNPLTA+ M  D 
Sbjct: 101 KSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF-DI 159

Query: 120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFT 179
                  + V     S + + II +A+  G   I         DE    LK +GA  V  
Sbjct: 160 VKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVT----VRRDEQIALLKDIGAAHVLN 215

Query: 180 ESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV-S 237
           E   +    ++ ++     P +  + V G  AS +   + +    + YG +      +  
Sbjct: 216 EKAPDFEATLREVMKAEQ-PRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIRE 274

Query: 238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
               IF+   ++GFWL +W+   K      +++       +G+  
Sbjct: 275 PGQLIFQHKHIEGFWLSEWMRQFKERRGPAILE-AQKRFSDGRWS 318

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  150 bits (381), Expect = 6e-43
 Identities = 58/326 (17%), Positives = 104/326 (31%), Gaps = 56/326 (17%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV------------------------- 37
            +       ++V +++ A+P+NPSD+  + G   +                         
Sbjct: 24  SIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS 83

Query: 38  ---RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVS 94
              R       G EG G V   GS+    A     + +      +  Y          + 
Sbjct: 84  MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV-AAIGGAMYSQYRCIPADQCLVLP 142

Query: 95  KDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 154
           + +     A+  VNPLTAL M+E    L    ++V   A S +GQ + QI    GI  +N
Sbjct: 143 EGATPADGASSFVNPLTALGMVETMR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVN 201

Query: 155 IIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKV 213
           I        E  + LK  GA  V    S   ++++   L +     + F+  GG      
Sbjct: 202 I----VRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVST-GATIAFDATGGGKLGGQ 256

Query: 214 LKFL-----------------SQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKW 256
           +                    +    +  YGG+   P   + +        + G+ L  +
Sbjct: 257 ILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRN--FGMAWGMGGWLLFPF 314

Query: 257 LSSEKATECRNMIDYLLCLAREGKLK 282
           L          +   ++    +    
Sbjct: 315 LQKIGRERANALKQRVVAEL-KTTFA 339

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  124 bits (314), Expect = 3e-33
 Identities = 76/299 (25%), Positives = 119/299 (39%), Gaps = 40/299 (13%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT- 61
           + P     + D+ V+     +N SDIN   G Y    K P   G+EG+GEV ++G + + 
Sbjct: 45  DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASA 104

Query: 62  RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 121
           R   G  V    P  G++  Y V   S+   V   S      T++V+  TA   L++   
Sbjct: 105 RYTVGQAVAYMAP--GSFAEYTVVPASIATPV--PSVKPEYLTLLVSGTTAYISLKELGG 160

Query: 122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--- 178
           L+ G  ++   A    GQ  +Q+++    H I        SDE    LK LG D      
Sbjct: 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGT----CSSDEKSAFLKSLGCDRPINYK 216

Query: 179 TESQLEVKNVKGLLANL-PEPALG----FNCVGGNSASKVLKFLSQGGTMVTYGGMS--- 230
           TE       V  +L    PE   G    +  VGG      +  L+  G ++  G +S   
Sbjct: 217 TE------PVGTVLKQEYPE---GVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ 267

Query: 231 ------KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY 283
                         +  + K  S++GF+L  +LS  +A      + +LL +   G L  
Sbjct: 268 TPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQA-----AMSHLLEMCVSGDLVC 321

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  122 bits (309), Expect = 8e-33
 Identities = 70/288 (24%), Positives = 113/288 (39%), Gaps = 22/288 (7%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           +  P       V V+  A  +N  D     G+YP  P +P+  G EG G V +VG  VTR
Sbjct: 20  DFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTR 78

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V       G +    V  ++   K++     E AA +++  LT   +L     +
Sbjct: 79  FKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQV 138

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV----- 177
             G+ I+ + A   VG    Q A+  G   I        S E     K LGA E      
Sbjct: 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGT----VSSPEKAAHAKALGAWETIDYSH 194

Query: 178 --FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 235
               +  LE+ + K          + ++ VG ++    L  ++  G +V++G  S     
Sbjct: 195 EDVAKRVLELTDGKKC-------PVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGPVSG 247

Query: 236 VSTSAFIFKD-LSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
           V+      KD + +    L  + ++ +    + M D L  +   GKLK
Sbjct: 248 VNLGILAQKDSVYVTRPTLGSYANNAQ--NLQTMADELFDMLASGKLK 293

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  121 bits (306), Expect = 2e-32
 Identities = 66/288 (22%), Positives = 110/288 (38%), Gaps = 22/288 (7%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E  P +  EN++ V+  A  IN  D     G+YP  P +P+  G E  G V  VGS V  
Sbjct: 20  EFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKH 78

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
           +  GD V+ +  + G + S           +      E AA   +  LT   +L     +
Sbjct: 79  IKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEI 138

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV----- 177
              +  + + A   VG    Q A+  G   I       G+ +  +     GA +V     
Sbjct: 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGT----VGTAQKAQSALKAGAWQVINYRE 194

Query: 178 --FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 235
               E   E+   K +        + ++ VG ++  + L  L + G MV++G  S     
Sbjct: 195 EDLVERLKEITGGKKV-------RVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTG 247

Query: 236 VSTSAFIFKD-LSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
           V+      K  L +    LQ ++++ +  E     + L  L   G +K
Sbjct: 248 VNLGILNQKGSLYVTRPSLQGYITTRE--ELTEASNELFSLIASGVIK 293

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  119 bits (300), Expect = 3e-31
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 24/287 (8%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++     K++ V +K+ A  +NP +     G Y  +P +P   G +  G + +VG   + 
Sbjct: 49  DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA 108

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V  S   SG +  Y +      +K+ +    +  A I +   TA R L     +
Sbjct: 109 FKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACV 168

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV----- 177
            +G+S++ +GA+  VG    QIAR  G+  +      AG++E ++ +   GA EV     
Sbjct: 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGT----AGTEEGQKIVLQNGAHEVFNHRE 224

Query: 178 --FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 235
             + +   +    KG         +    +   + SK L  LS GG ++  G      I 
Sbjct: 225 VNYIDKIKKYVGEKG-------IDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIE 275

Query: 236 VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
           ++    + K+ S+ G  L      E           L      G LK
Sbjct: 276 INPRDTMAKESSIIGVTLFSSTKEEFQQ----YAAALQAGMEIGWLK 318

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  118 bits (299), Expect = 3e-31
 Identities = 63/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
                E ++ ++ +++ A  +N  D+   +G     PK P V G+E  G V ++G +V  
Sbjct: 22  RKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG 81

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V+        W   V       +K+  D     AA   +N +TA  ML +   L
Sbjct: 82  YEIGDRVMAFVN-YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANL 140

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ 182
             G S++ + A   VGQ + Q+       ++        S    E +K          + 
Sbjct: 141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFG----TASTFKHEAIKDSVTHLFDRNAD 196

Query: 183 L--EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS---------- 230
              EVK +     ++       +C+ G++  K L  L   GT + YG  +          
Sbjct: 197 YVQEVKRISAEGVDIV-----LDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFF 251

Query: 231 ------KKPITVSTSAFIFKDLSLKGFWLQKWLSSE-KATECRNMIDYLLCLAREGKLK 282
                  +   V+      ++  + GF L   L  + +A   R +++ L+ L  + K+K
Sbjct: 252 SFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIK 310

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  116 bits (292), Expect = 2e-30
 Identities = 75/283 (26%), Positives = 116/283 (40%), Gaps = 44/283 (15%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           + +LP  E    +V V++ AA +N  D+   +GV   +  +P V G +G G V +VG  V
Sbjct: 17  VADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGV 76

Query: 61  TRLAPGDWVIPSP--------------------------PSSGTWQSYVVKDQSVWHKVS 94
              APGD V+ +P                             GT+  YVV  ++      
Sbjct: 77  EGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKP 136

Query: 95  KDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 154
           K+   E AA I +  LTA +M+ D   +  GD ++   A S V    IQIA+  G   I 
Sbjct: 137 KNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIA 196

Query: 155 IIRDRAGSDEAKEKLKGLGADEV-------FTESQLEVKNVKGLLANLPEPALGFNCVGG 207
                AGS++   + K LGADE        + +    +   KG  A+        +  G 
Sbjct: 197 T----AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKG--ADKV-----VDHTGA 245

Query: 208 NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
                V+K  + GG +   G  S    T+  +   ++ LS+ G
Sbjct: 246 LYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILG 288

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  116 bits (292), Expect = 4e-30
 Identities = 67/279 (24%), Positives = 102/279 (36%), Gaps = 40/279 (14%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           + E P  E  E+D+ V+ LA  +N  D   +E    +    P V   +  G V +VG +V
Sbjct: 43  LAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSV 102

Query: 61  TRLAPGDWVIPSP-----------------------PSSGTWQSYVVKDQSVWHKVSKDS 97
           TR  PGD VI +                           G    YVV  +  +    K  
Sbjct: 103 TRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSL 162

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
               A+T+    LTA   L +   L +GD +V  G T  V    +QIA+  G   I    
Sbjct: 163 DAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVT-- 219

Query: 158 DRAGSDEAKEKLKGLGADEVF--TESQLEVKNVKGLLANLPEPALG----FNCVGGNSAS 211
             + S E  ++   LGAD      E    V+ V  L  +      G        GG    
Sbjct: 220 --SSSREKLDRAFALGADHGINRLEEDW-VERVYALTGD-----RGADHILEIAGGAGLG 271

Query: 212 KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
           + LK ++  G +   G +    ++      + K   ++G
Sbjct: 272 QSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQG 310

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  113 bits (286), Expect = 1e-29
 Identities = 64/291 (21%), Positives = 108/291 (37%), Gaps = 38/291 (13%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV----RPKVPAVGGYEGVGEVYSVGS 58
           + P  E ++N + +K+ AA +NP D     G   V    +  +P+  GY+  GEV  +GS
Sbjct: 25  DTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS 84

Query: 59  AVTRLAPGDWV---IPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRM 115
            V  +  GD V      P     +  YV        +  +      AA++    LTAL+ 
Sbjct: 85  DVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQA 144

Query: 116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD 175
           L     +  GD ++ +     VG   IQ+A+ +G   I        S      LK LGA+
Sbjct: 145 LNQ-AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITT-----ASKRNHAFLKALGAE 198

Query: 176 EVF---TESQLEVKNVKGLLANLPEPA-LGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK 231
           +      E  L           +  P     + VGG+   + +  L + G +V+   ++ 
Sbjct: 199 QCINYHEEDFLLA---------ISTPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITA 249

Query: 232 KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
             +         K     G   Q   + E+      ++        E KL+
Sbjct: 250 GRV---IEVAKQKHRRAFGLLKQF--NIEELHYLGKLVS-------EDKLR 288

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  113 bits (286), Expect = 2e-29
 Identities = 66/290 (22%), Positives = 114/290 (39%), Gaps = 26/290 (8%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           + P   + E ++ +K     +N  +    +G+YP   + P V G E  G V + G  VT 
Sbjct: 27  DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGVTN 84

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWH---KVSKDSPMEYAATIIVNPLTALRMLEDF 119
              GD V     S+    S +     V       S D  ++  A  ++  LTAL    + 
Sbjct: 85  FEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTS-DEELKLYAAGLLQVLTALSFTNEA 143

Query: 120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-- 177
             +  GD ++   A   VG  + Q+ + +G H+I +    A +DE  +  K  GA+ +  
Sbjct: 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAV----ASTDEKLKIAKEYGAEYLIN 199

Query: 178 -----FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK 232
                     L+  N KG+          F+ VG ++    L  L + G  V++G  S  
Sbjct: 200 ASKEDILRQVLKFTNGKGV-------DASFDSVGKDTFEISLAALKRKGVFVSFGNASGL 252

Query: 233 PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
               S +    K+++L    L  +++  +  E +   D    L    KL 
Sbjct: 253 IPPFSITRLSPKNITLVRPQLYGYIADPE--EWKYYSDEFFGLVNSKKLN 300

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  112 bits (283), Expect = 3e-29
 Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 31/288 (10%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
             +    +  +D+ V+  A  INP D   I+   P+      V G +G G +  VG+ V 
Sbjct: 20  NSVDIPALAADDILVQNQAIGINPVDWKFIKA-NPINWSNGHVPGVDGAGVIVKVGAKVD 78

Query: 62  RLAPGDWVI--PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF 119
               G  V    S    G++  + V +      +  +   E AA +   P   L   + F
Sbjct: 79  SKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAAL---PCPLLTAWQAF 135

Query: 120 TTLN--SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
             +       ++  G  + V   + Q+  + G            +  ++      G   +
Sbjct: 136 EKIPLTKQREVLIVGFGA-VNNLLTQMLNNAGYVVDL-----VSASLSQALAAKRGVRHL 189

Query: 178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
           + E     +    +          F+ V   +A+ ++  L   G ++         I   
Sbjct: 190 YREPSQVTQKYFAI----------FDAVNSQNAAALVPSLKANGHIICIQD----RIPAP 235

Query: 238 TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAR---EGKLK 282
                 + +S     L          + + ++     L     +GK++
Sbjct: 236 IDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKME 283

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  113 bits (284), Expect = 1e-28
 Identities = 63/310 (20%), Positives = 95/310 (30%), Gaps = 66/310 (21%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVY-----------------PVRPKVPAVG 45
           E+P  E+  ++V V ++A+ IN + +                            +   V 
Sbjct: 54  EVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVL 113

Query: 46  GYEGVGEVYSVGSAVTRLAPGDWVIPSPPSS--------------------------GTW 79
           G +  G V   G  V R  PGD VI  P                             G  
Sbjct: 114 GSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGL 173

Query: 80  QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRML--EDFTTLNSGDSIVQNGATSIV 137
             Y V   S           E AA   +   TA RML  +    +  GD ++  GA+  +
Sbjct: 174 AEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGL 233

Query: 138 GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-----------FTESQLEVK 186
           G   IQ  ++ G   + +      S + +  ++ LG D V             +    V 
Sbjct: 234 GSYAIQFVKNGGGIPVAV----VSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVV 289

Query: 187 NVKGLLANLPEPALG------FNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
                LA L     G      F   G  +    +    +GGT+VT G  S    T     
Sbjct: 290 ETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRY 349

Query: 241 FIFKDLSLKG 250
              K   + G
Sbjct: 350 LWMKLKKIVG 359

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  110 bits (277), Expect = 3e-28
 Identities = 62/293 (21%), Positives = 103/293 (35%), Gaps = 26/293 (8%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVY--PVRPKVPAVGGYEGVGEVYSVGSAV 60
           E+         V ++  A  +N  D     G+    V  + P V G+E    V  VG  V
Sbjct: 20  EVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGV 79

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYA--ATIIVNPLTALRMLED 118
           T    G+ V    P  G +    +       KV KD  ++    A +++  +TA  +L  
Sbjct: 80  TDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQ 139

Query: 119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV- 177
              +  GD ++ + A   +G  ++  ARH G   I        ++E  E  + LG     
Sbjct: 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGT----VSTEEKAETARKLGCHHTI 195

Query: 178 ------FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK 231
                 F E   E+   KG+        + ++ +G ++  K L  L   G    YG  S 
Sbjct: 196 NYSTQDFAEVVREITGGKGV-------DVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASG 248

Query: 232 KPITVSTSAFIFKDLSLK--GFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
               +     +    SL      L  ++S    +E       L    + G L 
Sbjct: 249 VADPIRVVEDLGVRGSLFITRPALWHYMS--NRSEIDEGSKCLFDAVKAGVLH 299

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  109 bits (275), Expect = 1e-27
 Identities = 64/310 (20%), Positives = 105/310 (33%), Gaps = 42/310 (13%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
             P   +  + V V++ A  INPSD +             A  G +  G V +VGS VT 
Sbjct: 28  AAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLGTDYAGTVVAVGSDVTH 83

Query: 63  LAPGDWVI-------PSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRM 115
           +  GD V        P  P  G +  Y V    VW K+ K    E AA +     TA   
Sbjct: 84  IQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLA 143

Query: 116 LEDF------------TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD 163
           ++               T +    ++  G ++      +Q+ R  G   I        S 
Sbjct: 144 MKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-----SP 198

Query: 164 EAKEKLKGLGADEVF--TESQLEVKNVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQ- 219
              +  K  GA+EVF      L  + ++    N        +C+    S +     + + 
Sbjct: 199 HNFDLAKSRGAEEVFDYRAPNL-AQTIRTYTKN--NLRYALDCITNVESTTFCFAAIGRA 255

Query: 220 GGTMVTYGGMSKKPIT---VSTSAFIFKDLSLKGFWLQKWLSSEKATECR----NMIDYL 272
           GG  V+     +   T   V+T   +   +  +G           + E R    ++    
Sbjct: 256 GGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIA 315

Query: 273 LCLAREGKLK 282
             L  +G+L 
Sbjct: 316 GQLVEDGRLV 325

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  108 bits (273), Expect = 2e-27
 Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 15/287 (5%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           + + P     E +V V+  A  +N  DI + +G YP       + G E  GE+  VG  V
Sbjct: 45  IGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGV 104

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
           +  A GD V     + G +  Y +          K      AA +     T    L    
Sbjct: 105 SGYAVGDKVC-GLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMA 163

Query: 121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF-- 178
            L  G+S++ +G TS +G   IQ+AR  G          AGS    E  + LGA      
Sbjct: 164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYAT----AGSTGKCEACERLGAKRGINY 219

Query: 179 -TESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS-KKPIT 235
            +E     +K   G   ++       + +G     + +  L++ G +     +       
Sbjct: 220 RSEDFAAVIKAETGQGVDII-----LDMIGAAYFERNIASLAKDGCLSIIAFLGGAVAEK 274

Query: 236 VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
           V+ S  + K L++ G  ++   + EK     +++  +  L   G + 
Sbjct: 275 VNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVA 321

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  108 bits (271), Expect = 8e-27
 Identities = 46/310 (14%), Positives = 83/310 (26%), Gaps = 66/310 (21%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVY----------------PVRPKVP-AVG 45
           ++P  E+   +  V ++A+ +N + ++                        R  +P  V 
Sbjct: 62  DVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVI 121

Query: 46  GYEGVGEVYSVGSAVTRLAPGDWVIPSP--------------------------PSSGTW 79
           G +  G V   G  V     GD V+                              + G  
Sbjct: 122 GSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGL 181

Query: 80  QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT--LNSGDSIVQNGATSIV 137
               +   +           E AA   +   TA R L       +  GD+++  GA+  +
Sbjct: 182 AEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGL 241

Query: 138 GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQLEVKNVKGLLANL 195
           G    Q A   G + I +      S +  E  + +GA+ +             +      
Sbjct: 242 GSYATQFALAGGANPICV----VSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPK 297

Query: 196 PEPALG---------------FNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
                G               F   G  +    +    +GGT+ T    S          
Sbjct: 298 EWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYMHEYDNRY 357

Query: 241 FIFKDLSLKG 250
                  + G
Sbjct: 358 LWMSLKRIIG 367

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  105 bits (264), Expect = 3e-26
 Identities = 64/291 (21%), Positives = 102/291 (35%), Gaps = 27/291 (9%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-RPKVPAVGGYEGVGEVYSVGSAVT 61
           +L   +     V V++ A+  NP D     G  P  +  +PA+ G +  G V +VG  V 
Sbjct: 24  KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVD 83

Query: 62  RLAPGDWVIPSPP----SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
               GD V           GT   +   D  +         M  A+ + +  +TA   L 
Sbjct: 84  SFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLV 143

Query: 118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 177
           D   +  G +++  G    VG   IQIA  RG                 E ++ LGA  +
Sbjct: 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFA-----TARGSDLEYVRDLGATPI 198

Query: 178 -----FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK 232
                  +   E    +G         L ++ +GG         + + G +V+  G    
Sbjct: 199 DASREPEDYAAEHTAGQGF-------DLVYDTLGGPVLDASFSAVKRFGHVVSCLGWG-- 249

Query: 233 PITVSTSAFIFKDLSLKG-FWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
             T   +   FK  +  G F L   L++E       M+     L + GKL 
Sbjct: 250 --THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLA 298

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  103 bits (258), Expect = 2e-25
 Identities = 60/283 (21%), Positives = 104/283 (36%), Gaps = 20/283 (7%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++       N V V + AA +   D    +G Y ++ + P V G E  G V S     + 
Sbjct: 40  DVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAP-EGSG 98

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
           + PGD V+      G +   V    S             A  +I N  T          L
Sbjct: 99  IKPGDRVMAFNF-IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQL 157

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV----- 177
            +G++++  GA   +G   IQIA+  G   I +         A E +K +GAD V     
Sbjct: 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAV----VNRTAATEFVKSVGADIVLPLEE 213

Query: 178 -FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV 236
            + ++  E     G         +  + +GG +    ++ L+  G ++  G  +    T+
Sbjct: 214 GWAKAVREATGGAG-------VDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTI 266

Query: 237 STSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG 279
             +  + ++ SL G    ++L +            L  L  EG
Sbjct: 267 KVNRLLLRNASLIGVAWGEFLRTHADYLYETQ-AGLEKLVAEG 308

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  102 bits (255), Expect = 6e-25
 Identities = 71/313 (22%), Positives = 113/313 (36%), Gaps = 44/313 (14%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--------------RPKVPAVGGY 47
           + +P +    N+V VK+ AA +NP D+N   G                    + P   G 
Sbjct: 42  MMMPIIH-YPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGR 100

Query: 48  EGVGEVYSVGSAVTRLAPGD--WVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATI 105
           +  G V   G  V    PGD  W    P   GT   +VV   +      K      AA++
Sbjct: 101 DVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASL 160

Query: 106 IVNPLTALRMLEDFTTLN----SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG 161
               LTA   +     LN    +G  ++  GA+  VG   IQ+ +    H   +      
Sbjct: 161 PYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAV-----C 215

Query: 162 SDEAKEKLKGLGADEVF---TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLS 218
           S +A E ++ LGAD+V    +       +V+  L +L       + VGG++ +    FL 
Sbjct: 216 SQDASELVRKLGADDVIDYKSG------SVEEQLKSLKPFDFILDNVGGSTETWAPDFLK 269

Query: 219 Q--GGTMVTYGGMSKKPIT-------VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMI 269
           +  G T VT        +        +  +       +LK FW                +
Sbjct: 270 KWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCL 329

Query: 270 DYLLCLAREGKLK 282
           D +  L   GK++
Sbjct: 330 DDIAELVDAGKIR 342

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 61/351 (17%), Positives = 122/351 (34%), Gaps = 64/351 (18%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           +  +   E   +D+ VK+ A  I  +D + + G +P  P  P   G+E  G V   GSAV
Sbjct: 37  VRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTP--PVTLGHEFCGIVVEAGSAV 94

Query: 61  TRLAPGDWVIPSP--------------------------PSSGTWQSYVVKDQSVWHKVS 94
             +APG  +   P                             G +  YV+  +    ++ 
Sbjct: 95  RDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIP 154

Query: 95  KDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI 150
                 + A     PL      + +      + +G ++   G   I G   +Q+AR  G 
Sbjct: 155 LTLDPVHGA--FCEPLACCLHGVDLSG----IKAGSTVAILGGGVI-GLLTVQLARLAGA 207

Query: 151 HSINIIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPEPA-LGFNCVGGN 208
            ++ I+  R      +   + +GA       +   V+ + G +  +P    +   C G  
Sbjct: 208 TTV-ILSTR--QATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVA 264

Query: 209 SASK-VLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR 266
              K   +    GGT+V  G + +   + +     +F++L + G ++  +         R
Sbjct: 265 ETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPF-------VHR 317

Query: 267 NMIDYLLCLAREGKLKYDMELV----PFNNFQTALSKALGLHGSQPKQVIK 313
              D +      G ++ D  ++      +     +S        + K ++ 
Sbjct: 318 RAADLV----ATGAIEID-RMISRRISLDEAPDVISNP--AAAGEVKVLVI 361

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 24/294 (8%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           + E+      E +V +K+ A+ +N +D+ + +G Y   P    + G E  G V  +G   
Sbjct: 39  VKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGC 98

Query: 61  -TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF 119
                 GD  + +    G    YV   + +   + +   +  AA I    LTA ++L   
Sbjct: 99  QGHWKIGDTAM-ALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLV 157

Query: 120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-- 177
             + +GD ++ +   S VG   IQ+ R  G   +      AGS +  +  + LGA     
Sbjct: 158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVT----AGSQKKLQMAEKLGAAAGFN 213

Query: 178 -----FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS-K 231
                F+E+ L+     G   NL       +C+GG+   K +  L+  G  V YG M   
Sbjct: 214 YKKEDFSEATLKFTKGAG--VNLI-----LDCIGGSYWEKNVNCLALDGRWVLYGLMGGG 266

Query: 232 KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDY---LLCLAREGKLK 282
                  S  +FK  SL    L+   +  K        +            +L 
Sbjct: 267 DINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLL 320

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 97.3 bits (243), Expect = 2e-23
 Identities = 57/265 (21%), Positives = 98/265 (36%), Gaps = 29/265 (10%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
             L   E K +++ VK+ +  +NP D  +        P+V    G++ +G V SVG+ VT
Sbjct: 23  FNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSKAPRVL---GFDAIGVVESVGNEVT 79

Query: 62  RLAPGDWVI--PSPPSSGTWQSYVVKDQS-VWHKVSKDSPMEYAATIIVNPLTAL----- 113
               GD V    SP  +G+   Y + ++  V     K+   E A ++   PLT +     
Sbjct: 80  MFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKA-PKNISAEQAVSL---PLTGITAYET 135

Query: 114 ---RM-LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL 169
                 +      N G +++       VG    QIA+  G+  I      A  +E  E  
Sbjct: 136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITT----ASRNETIEWT 191

Query: 170 KGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGG 228
           K +GAD V    +  +   K     +      F     +     +++ +   G + T   
Sbjct: 192 KKMGADIVLNHKESLLNQFKTQ--GIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVA 249

Query: 229 MSKKPITVSTSAFIFKDLSLKGFWL 253
                     +A   K LS    ++
Sbjct: 250 F---ENDQDLNALKPKSLSFSHEFM 271

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 67/265 (25%), Positives = 100/265 (37%), Gaps = 28/265 (10%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           IELP      +D+ V++ A  +NP D        P       V GY+  G V +VG  VT
Sbjct: 43  IELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTD-WKVIGYDAAGIVSAVGPDVT 101

Query: 62  RLAPGD--WVIPSPPSSGTWQSYVVKDQS-VWHKVSKDSPMEYAATIIVNPLTAL----- 113
              PGD  +   S    GT   + + D+  V  K       E AA     PLT++     
Sbjct: 102 LFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAAL----PLTSITAWEA 157

Query: 114 ---RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKL 169
              R+  +     +  +I+  G    VG   +QIAR R  +  I      A   E +E +
Sbjct: 158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVI----ATASRPETQEWV 213

Query: 170 KGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGG 228
           K LGA  V   S+     V  L   L  PA  F+    +  A+++   ++  G       
Sbjct: 214 KSLGAHHVIDHSKPLAAEVAAL--GLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD 271

Query: 229 MSKKPITVSTSAFIFKDLSLKGFWL 253
               P       F  K +S+    +
Sbjct: 272 ----PSAFDIMLFKRKAVSIHHELM 292

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 69/337 (20%), Positives = 123/337 (36%), Gaps = 58/337 (17%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
             +P ++  +++V VK+ ++ +  SD+ RI          P   G+E  G + +VGS V 
Sbjct: 17  SVIPEIK-HQDEVRVKIASSGLCGSDLPRIFKNGAHYY--PITLGHEFSGYIDAVGSGVD 73

Query: 62  RLAPGDWVIPSP--------------------------PSSGTWQSYVVKDQSVWHKVSK 95
            L PGD V   P                             G +  Y+V  +     +  
Sbjct: 74  DLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPT 133

Query: 96  DSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH 151
           D P+E  A   + P+T    A  + +         +++  GA +I G   IQ A   G  
Sbjct: 134 DMPIEDGA--FIEPITVGLHAFHLAQ----GCENKNVIIIGAGTI-GLLAIQCAVALGAK 186

Query: 152 SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSAS 211
           S+    D   S E     K  GA + F  S++    ++ +L  L    L     G     
Sbjct: 187 SV-TAIDI--SSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTV 243

Query: 212 K-VLKFLSQGGTMVTYGGMSKKPITVSTSAF---IFKDLSLKGFWLQKWLSSEKATECRN 267
           +  ++       +    G   + + ++++ F   + K+L++ G W+  + S     E   
Sbjct: 244 ELAVEIAGPHAQLA-LVGTLHQDLHLTSATFGKILRKELTVIGSWMN-YSSPWPGQEWET 301

Query: 268 MIDYLLCLAREGKLKYDMELV----PFNNFQTALSKA 300
               L     E KL  +  L+     F +F  A+   
Sbjct: 302 ASRLL----TERKLSLE-PLIAHRGSFESFAQAVRDI 333

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 59/335 (17%), Positives = 112/335 (33%), Gaps = 56/335 (16%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVY-------PVRPKVPAVGGYEGVGEVYS 55
           E+   + K   V +K+ AA +  SD++  +G +        +  K+P   G+E  G++  
Sbjct: 17  EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEE 76

Query: 56  VGSAVTRLAPGDWVIPSPPSS--------------------------GTWQSYVVKDQSV 89
           VG  V   + GD V  +P                             G +  YV+     
Sbjct: 77  VGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYK 136

Query: 90  WHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARH-R 148
           +    +      AA +  + +T  R +    +L+   +++  GA   +G   +QIA+   
Sbjct: 137 YMYKLRRLNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS 195

Query: 149 GIHSINIIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPEPALGFNCVGG 207
           G   I +       +EA E  K  GAD V     Q  +  ++ +  +        +    
Sbjct: 196 GATIIGV----DVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKG-VDAVIDLNNS 250

Query: 208 NSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG-FWLQKWLSSEKATEC 265
               S   K L++ G  V  G      +          ++   G             ++ 
Sbjct: 251 EKTLSVYPKALAKQGKYVMVGLFG-ADLHYHAPLITLSEIQFVGSLVGN-------QSDF 302

Query: 266 RNMIDYLLCLAREGKLK-YDMELVPFNNFQTALSK 299
             ++     LA  GK+K    + +       A+  
Sbjct: 303 LGIMR----LAEAGKVKPMITKTMKLEEANEAIDN 333

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 90.7 bits (226), Expect = 3e-21
 Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 30/282 (10%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           +LP  E +E +V +++ A  +N +D     G Y  R   P + G E VG V   G     
Sbjct: 17  DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV--EGRRYAA 74

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
           L P           G     V   +     + +    E AA   V+ LTA   L+     
Sbjct: 75  LVPQ----------GGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKR-AQA 123

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV--FTE 180
             G+ ++   A   +G   +Q+AR  G+  +      A   E       LGA+E   + E
Sbjct: 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAA----ASRPEKLALPLALGAEEAATYAE 179

Query: 181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA 240
                K   GL   L         V G    + L  L+ GG +V  G    +   +    
Sbjct: 180 VPERAKAWGGLDLVLE--------VRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLR 231

Query: 241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
            + ++L++ GFWL       +       + +LL      +L+
Sbjct: 232 LMRRNLAVLGFWLTPL--LREGALVEEALGFLLPRL-GRELR 270

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 66/333 (19%), Positives = 122/333 (36%), Gaps = 62/333 (18%)

Query: 6   PVEVKENDVCVKMLAAPINPSDINRIEGVYP--VRPKVPAVGGYEGVGEVYSVGSAVTRL 63
           P      DV V++  A +  +D++ ++G++   ++PK+P   G+E VG +  V   V  L
Sbjct: 36  PRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGL 95

Query: 64  APGDWVIPSPPSS--------------------------GTWQSYVVKDQSVWHKVSKDS 97
             GD VI  P  +                          G +  ++        K+ KD 
Sbjct: 96  EKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDI 155

Query: 98  PMEYAATIIVNPLT--------ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG 149
             E      + PL         A++      TL  G  +   G    +G   +Q+ +   
Sbjct: 156 SREKLVE--MAPLADAGITAYRAVKKAAR--TLYPGAYVAIVGVGG-LGHIAVQLLKVMT 210

Query: 150 IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS 209
             ++ I  D    +E  +  + LGAD V    +  VK V  L        +  + VG  +
Sbjct: 211 PATV-IALDV--KEEKLKLAERLGADHVVDARRDPVKQVMELTRGRG-VNVAMDFVGSQA 266

Query: 210 A-SKVLKFLSQGGTMVT--YGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECR 266
                   L + G ++   YGG     +   T   I  ++S +G       +  +  E  
Sbjct: 267 TVDYTPYLLGRMGRLIIVGYGG----ELRFPTIRVISSEVSFEGSL---VGNYVELHE-- 317

Query: 267 NMIDYLLCLAREGKLKYDMELVPFNNFQTALSK 299
                L+ LA +GK++ ++++   +     L +
Sbjct: 318 -----LVTLALQGKVRVEVDIHKLDEINDVLER 345

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 92.5 bits (230), Expect = 5e-21
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 12/176 (6%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
                 + + +V + M AA +N  D     G+YP    +    G EG G V   G  VT 
Sbjct: 230 PTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGVASL----GSEGAGVVVETGPGVTG 285

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
           LAPGD V+   P    +    V D  +  ++        AA++ +  LTA   L D   L
Sbjct: 286 LAPGDRVMGMIP--KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGL 343

Query: 123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF 178
             G+S++ + A   VG   IQ+ARH G      +   A  D+  + +  L  + + 
Sbjct: 344 RPGESLLVHSAAGGVGMAAIQLARHLGAE----VYATASEDK-WQAV-ELSREHLA 393

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 64/290 (22%), Positives = 110/290 (37%), Gaps = 48/290 (16%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEG--VYPVRPKVPAVGGYEGVGEVYSVGS 58
           ++E+   +    +V +K+LA  I  +D++  E       R K P + G+E  GEV  +G 
Sbjct: 19  LVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGP 78

Query: 59  AVTRLAPGDWVIPSP--------------------------PSSGTWQSYVVKDQSVWHK 92
            V  +  GD+V                               + G +  Y V       K
Sbjct: 79  GVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWK 138

Query: 93  VSKDSPMEYAATIIVNPL-----TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARH 147
             K  P EYA   +  PL     T L          SG S++  GA  + G   I +A+ 
Sbjct: 139 NPKSIPPEYAT--LQEPLGNAVDTVLAGPI------SGKSVLITGAGPL-GLLGIAVAKA 189

Query: 148 RGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG 207
            G + + I+ +   SD  +E  K +GAD V    + +V      + +     +     G 
Sbjct: 190 SGAYPV-IVSEP--SDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246

Query: 208 NSASK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFI-FKDLSLKGFWLQK 255
             A +  L+ ++  G +    G+    +T+  +  I FK L++ G   + 
Sbjct: 247 PKALEQGLQAVTPAGRVS-LLGLYPGKVTIDFNNLIIFKALTIYGITGRH 295

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 88.8 bits (221), Expect = 3e-20
 Identities = 56/330 (16%), Positives = 118/330 (35%), Gaps = 52/330 (15%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVY-PVRPKVPAVGGYEGVGEVYSVGSAVT 61
           ++   E +  +V +++  A +  +D+   +GV      ++P + G+E  G +  VG  + 
Sbjct: 20  DVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGE-LA 78

Query: 62  RLAPGDWVIPSPPSS--------------------------GTWQSYVVKDQSVWHKVSK 95
           ++  GD V+                                G +  Y++   S W     
Sbjct: 79  KVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKLN 138

Query: 96  DSPMEYAATIIVNPLT---ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHS 152
                 AA +     T   A+R    F +  +   ++ NG    +    IQI +    + 
Sbjct: 139 SLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGG-LAVYTIQILKALMKNI 197

Query: 153 INIIRDRAGSDEAKEKLKGLGADEV--FTESQLEVKNVKGLLANLPEPALGFNCVGGNSA 210
             +   R  S + ++    LGAD V    +++  +  +   L      ++  + VG    
Sbjct: 198 TIVGISR--SKKHRDFALELGADYVSEMKDAESLINKLTDGLG----ASIAIDLVGTEET 251

Query: 211 -SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMI 269
              + K L+Q G ++   GM  K +++        +  L G             +  +++
Sbjct: 252 TYNLGKLLAQEGAIILV-GMEGKRVSLEAFDTAVWNKKLLG-----SNYGS-LNDLEDVV 304

Query: 270 DYLLCLAREGKLKYDMELVPFNNFQTALSK 299
                L+  GK+K  +  VP ++   A + 
Sbjct: 305 R----LSESGKIKPYIIKVPLDDINKAFTN 330

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 88.4 bits (220), Expect = 5e-20
 Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 95/360 (26%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
            E+  +      + V++L+A +  SD++   G  P R  +P + G+EG G V  V     
Sbjct: 35  FEISDI--PRGSILVEILSAGVCGSDVHMFRGEDP-RVPLPIILGHEGAGRVVEVNGEKR 91

Query: 62  -----RLAPGDWVIPS-----------------------------------PPSSGTWQS 81
                 L PGD ++ +                                   P   G + S
Sbjct: 92  DLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSS 151

Query: 82  YVV--KDQSVWHKVSKDSPMEYAATI---IVNPLTALRMLEDFTTLNSGDSIVQNGATSI 136
           ++V   +  V  KVS+   ++  A           A             +     G T +
Sbjct: 152 HIVLDPETDVL-KVSEKDDLDVLAMAMCSGATAYHAF--------DEYPE--SFAGKTVV 200

Query: 137 V------GQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVK 189
           +      G   + IAR  G  ++ I+         + KL + +GAD      +  V+  +
Sbjct: 201 IQGAGPLGLFGVVIARSLGAENV-IVIAG---SPNRLKLAEEIGADLTLNRRETSVEERR 256

Query: 190 GLLANLPEPA---LGFNCVGGNSASK-VLKFLSQGGTMVTYG-GMSKKPITVSTSAF-IF 243
             + ++             G + A     + L +GG     G  + + P+      + + 
Sbjct: 257 KAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVL 316

Query: 244 KDLSLKGFWLQKWLSSEKATECRNMID--YLLCLAREGKLKYDMELV----PFNNFQTAL 297
           K+ + KG W+             +       + +          +L+    P      AL
Sbjct: 317 KNATFKGIWV------------SDTSHFVKTVSITSRNYQLLS-KLITHRLPLKEANKAL 363

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 87.6 bits (218), Expect = 6e-20
 Identities = 60/332 (18%), Positives = 118/332 (35%), Gaps = 63/332 (18%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++P  + K N++ + +  + +  +D++   G +P+  K+P VGG+EG G V  +G  V  
Sbjct: 22  DIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG 81

Query: 63  LAPGDWV----------------------IPSPPSS-----GTWQSYVVKDQSVWHKVSK 95
              GD+                        P    S     G++Q Y   D      + +
Sbjct: 82  WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQ 141

Query: 96  DSPMEYAATIIVNPLT--------ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARH 147
            + +   A     P+         AL+       L +G  +  +GA   +G   +Q A+ 
Sbjct: 142 GTDLAQVA-----PILCAGITVYKALKS----ANLMAGHWVAISGAAGGLGSLAVQYAKA 192

Query: 148 RGIHSINIIRDRAGSDEAKEKLKGLGADEV--FTESQLEVKNVKGLLANLPEPALGFNCV 205
            G   + I     G +  +E  + +G +    FT+ +  V  V           +  N  
Sbjct: 193 MGYRVLGI----DGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVI--NVS 246

Query: 206 GGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATE 264
              +A     +++   GT V  G  +           + K +S+ G          +A +
Sbjct: 247 VSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVG-----SYVGNRA-D 300

Query: 265 CRNMIDYLLCLAREGKLKYDMELVPFNNFQTA 296
            R  +D+       G +K  +++V  +     
Sbjct: 301 TREALDF----FARGLVKSPIKVVGLSTLPEI 328

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 60/336 (17%), Positives = 115/336 (34%), Gaps = 73/336 (21%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+P  +     V VK+ A+ +  +D++  +G +PV+P +P + G+EGVG V +VGS V+R
Sbjct: 19  EVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSR 78

Query: 63  LAPGD-----WVI-----------------PSPPSS-----GTWQSYVVKDQSVWHKVSK 95
           +  GD     W+                      ++     G +  YVV D +    +  
Sbjct: 79  VKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPD 138

Query: 96  DSPMEYAATIIVNPLT--------ALRMLEDFTTLNSGDSIVQNGATSIV-----GQCII 142
                  A     P+          L++    T    G  +V      I      G   +
Sbjct: 139 KVGFVEIA-----PILCAGVTVYKGLKV----TDTRPGQWVV------ISGIGGLGHVAV 183

Query: 143 QIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF 202
           Q AR  G+    +       D      + LGA+        +      L   +       
Sbjct: 184 QYARAMGLRVAAV----DIDDAKLNLARRLGAEVAVNAR--DTDPAAWLQKEIGGAHGVL 237

Query: 203 NCVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEK 261
                  A S+ +  + +GGT+    G+            + K ++++G      +   +
Sbjct: 238 VTAVSPKAFSQAIGMVRRGGTIAL-NGLPPGDFGTPIFDVVLKGITIRG-----SIVGTR 291

Query: 262 ATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTAL 297
           + + +  +D     A  G +K  +     ++     
Sbjct: 292 S-DLQESLD----FAAHGDVKATVSTAKLDDVNDVF 322

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 85.4 bits (212), Expect = 3e-19
 Identities = 62/329 (18%), Positives = 102/329 (31%), Gaps = 50/329 (15%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP-KVPAVGGYEGVGEVYSVGSAVT 61
           ++P       ++ +K+ AA +  SDI  ++         +P   G+EGVG V  +G  VT
Sbjct: 17  DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVT 76

Query: 62  RLAPGDWVIPSPPSS-------------------------------GTWQSYVVKDQSVW 90
               GD V    P                                 G+   Y++ D +  
Sbjct: 77  GFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARH 136

Query: 91  HKVSKDSPMEYAATIIVNPLTALRMLEDFTT-LNSGDSIVQNGATSIVGQCIIQIARHRG 149
                D     AA +    LT    +      L  G + V  G    +G   IQI R   
Sbjct: 137 LVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGG-LGHVGIQILRAVS 195

Query: 150 IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS 209
              + I  D    D+     + +GAD            ++  L         F+ VG  S
Sbjct: 196 AARV-IAVDL--DDDRLALAREVGADAAVKSGAGAADAIRE-LTGGQGATAVFDFVGAQS 251

Query: 210 A-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNM 268
                 + ++  G +    G+            I    S+   +   W +  +  E    
Sbjct: 252 TIDTAQQVVAVDGHISVV-GIHAGAHAKVGFFMIPFGASVVTPY---WGTRSELME---- 303

Query: 269 IDYLLCLAREGKLKYDMELVPFNNFQTAL 297
              ++ LAR G+L    E    +    A 
Sbjct: 304 ---VVALARAGRLDIHTETFTLDEGPAAY 329

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 85.0 bits (211), Expect = 6e-19
 Identities = 60/286 (20%), Positives = 105/286 (36%), Gaps = 56/286 (19%)

Query: 6   PVEVKENDVCVKMLAAPINPSDI-----NRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
             E+KE +V V + +  I  SD+       I G   V      V G+E  GEV +V  +V
Sbjct: 35  GEELKEGEVTVAVRSTGICGSDVHFWKHGCI-GPMIVEC--DHVLGHESAGEVIAVHPSV 91

Query: 61  TRLAPGDWV-----IP----------------------SPPSSGTWQSYVVKDQSVWHKV 93
             +  GD V     +                       +PP  G  + YV       HK+
Sbjct: 92  KSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKI 151

Query: 94  SKDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG 149
             +   E  A  ++ PL+     L+       +  GD ++  GA  I G   +  A+  G
Sbjct: 152 G-NMSYENGA--MLEPLSVALAGLQRAG----VRLGDPVLICGAGPI-GLITMLCAKAAG 203

Query: 150 IHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQLEVKNVKGLLANL--PEPALGFNCV 205
              + +I D    +   +  K +  + V    E     ++ K ++ +    EPA+   C 
Sbjct: 204 ACPL-VITDI--DEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECT 260

Query: 206 GGNSASK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
           G  S+    +  +  GG +    G+ K  I +       +++ L+ 
Sbjct: 261 GVESSIAAAIWAVKFGGKVF-VIGVGKNEIQIPFMRASVREVDLQF 305

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 53/289 (18%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDI-----NRIEGVYPVRPKVPAVGGYEGVGEVYS 55
           +   P  E   N+V ++M +  I  SD+      RI G + V+   P V G+E  G V  
Sbjct: 21  LENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRI-GNFIVKK--PMVLGHEASGTVEK 77

Query: 56  VGSAVTRLAPGDWV-----IP----------------------SPPSSGTWQSYVVKDQS 88
           VGS+V  L PGD V      P                      +PP  G    +   + +
Sbjct: 78  VGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAA 137

Query: 89  VWHKVSKDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQI 144
             +K+  +   E  A  ++ PL+    A R       +  G  ++  GA  I G   + +
Sbjct: 138 FCYKLPDNVTFEEGA--LIEPLSVGIHACRRGG----VTLGHKVLVCGAGPI-GMVTLLV 190

Query: 145 ARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPA-LGF 202
           A+  G   + ++ D   S     K K +GAD V   S+    +  + +   L     +  
Sbjct: 191 AKAMGAAQV-VVTDL--SATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247

Query: 203 NCVGGNSASK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
            C G  ++ +  +     GGT+V   G+  +  TV       +++ +KG
Sbjct: 248 ECTGAEASIQAGIYATRSGGTLV-LVGLGSEMTTVPLLHAAIREVDIKG 295

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 63/286 (22%), Positives = 106/286 (37%), Gaps = 50/286 (17%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIE--GVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           + P  E KE++V ++M    I  SD++  E   +     K P V G+E  G V  VG  V
Sbjct: 20  QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNV 79

Query: 61  TRLAPGDWV-----IP----------------------SPPSSGTWQSYVVKDQSVWHKV 93
             L  GD V     +P                      +PP  G    Y V      HK+
Sbjct: 80  KHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKL 139

Query: 94  SKDSPMEYAATIIVNPLT----ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG 149
             +  +E  A  ++ PL+    A R       +  G +++  GA  I G   +  A+  G
Sbjct: 140 PDNVSLEEGA--LLEPLSVGVHACRRAG----VQLGTTVLVIGAGPI-GLVSVLAAKAYG 192

Query: 150 IHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQLEVKNVKGLLANLPEPA-LGFNCV 205
              + +   R  S    E  K  GAD         + E   ++ + + + +   +  +C 
Sbjct: 193 A-FV-VCTAR--SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 248

Query: 206 GGNSASK-VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
           G        +     GGT++   GM  + +TV       +++ +K 
Sbjct: 249 GNEKCITIGINITRTGGTLM-LVGMGSQMVTVPLVNACAREIDIKS 293

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 57/285 (20%), Positives = 94/285 (32%), Gaps = 49/285 (17%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEG--VYPVRPKVPAVGGYEGVGEVYSVGS 58
           +++ P  E    ++ V++ AA I  +D++  +       R + P V G+E  G V +VG 
Sbjct: 15  LVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGP 74

Query: 59  AVTRLAPGDWVIPSP--------------------------PSSGTWQSYVVKDQSVWHK 92
            V R   GD V                                 G +  YVV        
Sbjct: 75  GVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWV 134

Query: 93  VSKDSPMEYAATIIVNPL-----TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARH 147
             KD P E AA  I+ P      T         +  SG S++  GA  I G     + R 
Sbjct: 135 NPKDLPFEVAA--ILEPFGNAVHTVYA-----GSGVSGKSVLITGAGPI-GLMAAMVVRA 186

Query: 148 RGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGG 207
            G   I ++ D   +       +      V    +  ++ V+ +  +     +     G 
Sbjct: 187 SGAGPI-LVSDP--NPYRLAFARPYADRLVNPLEEDLLEVVRRVTGS--GVEVLLEFSGN 241

Query: 208 NSASKV-LKFLSQGGTMVTYGGMSKKPITVS-TSAFIFKDLSLKG 250
            +A    L  L  GG      G+   PI        + + ++  G
Sbjct: 242 EAAIHQGLMALIPGGEAR-ILGIPSDPIRFDLAGELVMRGITAFG 285

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 79.9 bits (198), Expect = 3e-17
 Identities = 64/335 (19%), Positives = 114/335 (34%), Gaps = 73/335 (21%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+    +   +V V++ A  +  +D++   G +PV+PK+P + G+EGVG V  VG  VT 
Sbjct: 17  EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTH 76

Query: 63  LAPGDWV---------------------------IPSPPSSGTWQSYVVKDQSVWHKVSK 95
           L  GD V                                  G +  Y         K+  
Sbjct: 77  LKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPD 136

Query: 96  DSPMEYAATIIVNPLT--------ALRMLEDFTTLNSGDSIVQNGATSIV-----GQCII 142
           +   E AA     P+         AL++    T    G+ +       I      G   +
Sbjct: 137 NLSFEEAA-----PIFCAGVTTYKALKV----TGAKPGEWVA------IYGIGGLGHVAV 181

Query: 143 QIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF 202
           Q A+  G++ + +       DE  E  K LGAD V    + +    K +   +       
Sbjct: 182 QYAKAMGLNVVAV----DIGDEKLELAKELGADLVVNPLKEDA--AKFMKEKVGGVHAAV 235

Query: 203 NCVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEK 261
                  A       + +GG  V   G+  + + +     +   + + G      +   +
Sbjct: 236 VTAVSKPAFQSAYNSIRRGGACVL-VGLPPEEMPIPIFDTVLNGIKIIG-----SIVGTR 289

Query: 262 ATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTA 296
             + +  + +    A EGK+K  +E+ P       
Sbjct: 290 K-DLQEALQF----AAEGKVKTIIEVQPLEKINEV 319

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 39/372 (10%), Positives = 100/372 (26%), Gaps = 79/372 (21%)

Query: 1   MIELP-PVEVKENDVCVKMLAAPINPSDINRIEGVYPV----RPKVPAVGGYEGVGEVYS 55
           + ++          + ++ +   I  +D   + G   +    + K   V G+E +G V  
Sbjct: 15  VKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE 74

Query: 56  VGSAVTRLAPGDWVIPSP-----------------------------PSSGTWQSYVVKD 86
                   + GD V+P                                  G  + +   D
Sbjct: 75  SYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDD 131

Query: 87  QSVWHKVSKDSPMEYA----ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIV----- 137
                K+ K              I   +  +  ++    + + D    N    +V     
Sbjct: 132 PKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGP 191

Query: 138 -GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLP 196
            G     + R  G+    +   R  ++  +  ++    +   + +  +      L  ++ 
Sbjct: 192 IGVLFTLLFRTYGLEVW-MANRREPTEVEQTVIEETKTNYYNSSNGYDK-----LKDSVG 245

Query: 197 EPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGGMSKKPITV---STSAFIFKDLSLKGF 251
           +  +  +  G +      V+  L + G +  +G  +   + +   +    +  + ++ G 
Sbjct: 246 KFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIG- 304

Query: 252 WLQKWLSSEKATECRNMIDYLLCLA--REGKLKYDMEL-------VPFNNFQTALSKALG 302
                              +   +      K  Y           V  N+ +  L     
Sbjct: 305 -----------LVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLRE 353

Query: 303 LHGSQPKQVIKF 314
               + K  I +
Sbjct: 354 KEHGEIKIRILW 365

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 53/303 (17%), Positives = 91/303 (30%), Gaps = 59/303 (19%)

Query: 1   MIELP-PVEVKENDVCVKMLAAPINPSDINRIEG------VYPVRPKVPAVGGYEGVGEV 53
           + E+P P   K  ++ +K+ A  I  SD++  +       +YP     P   G+E  G V
Sbjct: 44  VEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVV 103

Query: 54  YSVGSAVT------RLAPGDWVIPSP--------------------------PSSGTWQS 81
              G          R   G+ V                                 G +  
Sbjct: 104 VEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAE 163

Query: 82  YVVKDQSVWHKV-------SKDSPMEYAATIIVNPLT-ALR-MLEDFTTLNSGDSIVQNG 132
           YV  D      +         D      +  +V P + A   ++     +  GD++V  G
Sbjct: 164 YVKVDAKYAWSLRELEGVYEGDRLFLAGS--LVEPTSVAYNAVIVRGGGIRPGDNVVILG 221

Query: 133 ATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLL 192
              I G   + I +H G   + I+ +   S+  +   K LGAD V   ++          
Sbjct: 222 GGPI-GLAAVAILKHAGASKV-ILSEP--SEVRRNLAKELGADHVIDPTKENFVEAVLDY 277

Query: 193 ANLPEPALGFNCVGGNSA-----SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLS 247
            N     L     G          +V+         V     +   I ++   F  +   
Sbjct: 278 TNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQ 337

Query: 248 LKG 250
           + G
Sbjct: 338 IVG 340

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 44/301 (14%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           +  +    +K  +V ++ L   ++P      +    ++     +G    V  V  V S  
Sbjct: 28  LKTVELPPLKNGEVLLEALFLSVDPYMRIASK---RLKEGAVMMGQ--QVARV--VESKN 80

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSK----DSPMEYAATIIVNP-LTALRM 115
           +    G  V+    +   W ++ + D     K+        P+  A   I  P LTA   
Sbjct: 81  SAFPAGSIVL----AQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFG 136

Query: 116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD 175
           L +   +  G++++ + A   VG  + QIA+ +G   +      AGSDE    LK +G D
Sbjct: 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA----AGSDEKIAYLKQIGFD 192

Query: 176 EVF---TESQLEVKNVKGLLANLPEPALGFNC----VGGNSASKVLKFLSQGGTMV---- 224
             F   T + LE    + L    P+   G++C    VGG   + VL  +   G +     
Sbjct: 193 AAFNYKTVNSLE----EALKKASPD---GYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA 245

Query: 225 --TYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK 282
              Y  M + P   S  + I+K L ++GF + +W    +    R+++ ++     EGK++
Sbjct: 246 ISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWV----LEGKIQ 301

Query: 283 Y 283
           Y
Sbjct: 302 Y 302

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 19/226 (8%)

Query: 6    PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAP 65
             +     D    +    +N  D+    G         ++ G     +         R A 
Sbjct: 1554 ALPASCQDRLCSVYYTSLNFRDVMLATGKLSPD----SIPGKWLTRDCMLGMEFSGRDAS 1609

Query: 66   GDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSG 125
            G  V+   P+ G   + V+  Q    +V     +E AA++ +   TA   L     +  G
Sbjct: 1610 GRRVMGMVPAEGL-ATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPG 1668

Query: 126  DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-------F 178
            +S++ +  +  VGQ  I IA  RG      +         + +   L            F
Sbjct: 1669 ESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSF 1728

Query: 179  TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMV 224
             +  L     KG+        L  N +        ++ L+Q G  +
Sbjct: 1729 EQHVLRHTAGKGV-------DLVLNSLAEEKLQASVRCLAQHGRFL 1767

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 59/367 (16%), Positives = 112/367 (30%), Gaps = 80/367 (21%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV--PAVGGYEGVGEVYSVGS 58
           +IE P  E +  +  V+ L   +  +D   I G +   P+     V G+E VG V  V  
Sbjct: 15  VIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVV--VDP 72

Query: 59  AVTRLAPGDWV--IPSPPSS-----------------------------GTWQSYVVKDQ 87
             T L  GD V      P +                             G    +    +
Sbjct: 73  NDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPE 132

Query: 88  SVWHKVSKDSPMEYAATIIVNPLT----ALRMLEDF--TTLNSGDSIVQNGATSIVGQCI 141
               ++   S  E     ++ P++    AL               S    G  S+ G   
Sbjct: 133 KYLVRI-PRSQAELGF--LIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSL-GLLT 188

Query: 142 IQIAR--HRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPA 199
           + + +   +G  ++  +  R   D   + ++ L A  V +        V+ +     +  
Sbjct: 189 LAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQT----PVEDVPDVYEQMD 244

Query: 200 LGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAF----IFKDLSLKGFWLQ 254
             +   G      + ++ L+  G     G  S     V   AF    +  + +L G    
Sbjct: 245 FIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVG---- 300

Query: 255 KWLSSEKATECRNMIDY---LLCLAREGKLKYDMELV----PFNNFQTALSKALGLHGSQ 307
                   +   ++  +    +   +  K   + +LV    P + F+ A         + 
Sbjct: 301 --------SVNSHVEHFEAATVTFTKLPKWFLE-DLVTGVHPLSEFEAAFDDD----DTT 347

Query: 308 PKQVIKF 314
            K  I+F
Sbjct: 348 IKTAIEF 354

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 67.6 bits (166), Expect = 5e-13
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 2  IEL-PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
          IE+ PP   K ++V +K++A  +  +D   + G  P     P + G+ G G V SVG  V
Sbjct: 24 IEVAPP---KAHEVRIKIIATAVCHTDAYTLSGADP-EGCFPVILGHLGAGIVESVGEGV 79

Query: 61 TRLAPGDWVIPS 72
          T+L  GD VIP 
Sbjct: 80 TKLKAGDTVIPL 91

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
          +++     + ++V VK++A  +  +D+   +  YPV    PAV G+EG G + ++G  VT
Sbjct: 24 LKIRQP--QGDEVLVKVVATGMCHTDLIVRDQKYPVPL--PAVLGHEGSGIIEAIGPNVT 79

Query: 62 RLAPGDWVIPSPPSSGT 78
           L  GD V+ S    G 
Sbjct: 80 ELQVGDHVVLSYGYCGK 96

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 68/312 (21%), Positives = 109/312 (34%), Gaps = 58/312 (18%)

Query: 3   ELP-PVEVKENDVCVKMLAAPINP------SDINRIEGVY--PVRPKVPAVGGYEGVGEV 53
            +   V    N V VK L    +P         +           P  P  G   GV  +
Sbjct: 29  TVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGY--GVSRI 86

Query: 54  YSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS---PMEYAATIIVNP- 109
             + S       GD +         W+ Y V                P+ Y   ++  P 
Sbjct: 87  --IESGHPDYKKGDLLW----GIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPG 140

Query: 110 LTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL 169
           +TA     +  +   G+++  + A+  VGQ + Q+A+  G + +      AGS E  + L
Sbjct: 141 MTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGS----AGSKEKVDLL 196

Query: 170 KG-LGADEVF---TESQLEVKNVKGLLANLPEPALGFNC----VGGNSASKVLKFLSQGG 221
           K   G D+ F    ES L       L    P    G +     VGG     VL  ++  G
Sbjct: 197 KTKFGFDDAFNYKEESDLT----AALKRCFPN---GIDIYFENVGGKMLDAVLVNMNMHG 249

Query: 222 TMVTYGGMS----KKPITVST-SAFIFKDLSLKGF----WLQKWLSSEKATECRNMIDYL 272
            +   G +S    +    V   S  I+K   ++GF    +  K+    K  E   ++ ++
Sbjct: 250 RIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKY---SKFLE--FVLPHI 304

Query: 273 LCLAREGKLKYD 284
               REGK+ Y 
Sbjct: 305 ----REGKITYV 312

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 2  IEL-PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
          IE+ PP   K  +V ++++A  + P+DIN  +         P V G+E  G V SVG  V
Sbjct: 26 IEVSPP---KACEVRIQVIATCVCPTDINATDPKKK--ALFPVVLGHECAGIVESVGPGV 80

Query: 61 TRLAPGDWVIPS 72
          T   PGD VIP 
Sbjct: 81 TNFKPGDKVIPF 92

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 2  IEL-PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
          I + PP   K ++V +K+LA+ I  SD + ++ + P   K P + G+E VG V S+G+ V
Sbjct: 27 ITVAPP---KAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIGAGV 81

Query: 61 TRLAPGDWVIPS 72
          T + PGD VIP 
Sbjct: 82 TCVKPGDKVIPL 93

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 2  IEL-PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
          +E+ PP   K ++V +KM+A  I  SD + + G       +P + G+E  G V S+G  V
Sbjct: 26 VEVAPP---KAHEVRIKMVATGICRSDDHVVSGTLV--TPLPVIAGHEAAGIVESIGEGV 80

Query: 61 TRLAPGDWVIPS 72
          T + PGD VIP 
Sbjct: 81 TTVRPGDKVIPL 92

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 2  IEL-PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
          IE+  P     N++ +K++A  +  +D+  +          P V G+EG G V SVG  V
Sbjct: 26 IEVDVP---HANEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGIVESVGPGV 81

Query: 61 TRLAPGDWVIPS 72
          T   PG+ VIP 
Sbjct: 82 TEFQPGEKVIPL 93

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 50/250 (20%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEV-------YS 55
            +   ++ ++ V +K+  + IN  D    +    +  + P + G +  G V       ++
Sbjct: 23  TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFA 82

Query: 56  VGSAV------------------TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS 97
            G  V                    + PGDW++P P +    ++ V              
Sbjct: 83  EGDEVIATSYELGVSRDGGLSEYASV-PGDWLVPLPQNLSLKEAMVY------------- 128

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
                 T       ++  LE         S++  GAT  VG   + +   RG   +    
Sbjct: 129 -----GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVAST- 182

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFL 217
              G+ EA + LK LGA EV +   +    +K L     +     + VGG   + +L  +
Sbjct: 183 ---GNREAADYLKQLGASEVISREDVYDGTLKALSK--QQWQGAVDPVGGKQLASLLSKI 237

Query: 218 SQGGTMVTYG 227
             GG++   G
Sbjct: 238 QYGGSVAVSG 247

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 46/250 (18%), Positives = 82/250 (32%), Gaps = 50/250 (20%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEV-------YS 55
            +   ++ E DV V++  + +N  D         +    P V G +  G V       + 
Sbjct: 22  TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSSQHPRFR 81

Query: 56  VGSAV------------------TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS 97
            G  V                   RL  G+W++P P      ++  +             
Sbjct: 82  EGDEVIATGYEIGVTHFGGYSEYARL-HGEWLVPLPKGLTLKEAMAIGTAG--------- 131

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
              + A + ++       LE+         ++  GAT  VG   + +   RG        
Sbjct: 132 ---FTAALSIH------RLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEAST- 181

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFL 217
              G     + L+ LGA EV     +  + ++ L       A   + VGG + + VL  +
Sbjct: 182 ---GKAAEHDYLRVLGAKEVLAREDVMAERIRPLDK--QRWAAAVDPVGGRTLATVLSRM 236

Query: 218 SQGGTMVTYG 227
             GG +   G
Sbjct: 237 RYGGAVAVSG 246

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 66/313 (21%), Positives = 114/313 (36%), Gaps = 64/313 (20%)

Query: 6   PVEVKENDVCVKMLAAPINP------SDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSA 59
           P  + E  V V+ L   ++P      ++    + + P +      GG  G+G +    S 
Sbjct: 37  PDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG--GIGII--EESK 92

Query: 60  VTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSK---DSPMEYAATIIVNP-LTALRM 115
            T L  GD+V         WQ+ V+ D +   KV     D  + Y    I  P LT+L  
Sbjct: 93  HTNLTKGDFVTSF---YWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIG 149

Query: 116 LEDFTTLNSGDS--IVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKG- 171
           +++   + +G +  +V +GA    G    QI    G    + I     G+ E    L   
Sbjct: 150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGI----CGTHEKCILLTSE 205

Query: 172 LGADEVF---TESQLEVKNVKGLLANL-PEPALGFNC----VGGNSASKVLKFLSQGGTM 223
           LG D       +      NV   L    P    G +     VGGN +  V+  +++   +
Sbjct: 206 LGFDAAINYKKD------NVAEQLRESCPA---GVDVYFDNVGGNISDTVISQMNENSHI 256

Query: 224 VTYGGMS----KKPITVST-----SAFIFKDLSLKGF----WLQKWLSSEKATECRNMID 270
           +  G +S      P          +    ++++ + F    +  K+   E       +  
Sbjct: 257 ILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKF---EPGIL--QLSQ 311

Query: 271 YLLCLAREGKLKY 283
           +     +EGKLK 
Sbjct: 312 WF----KEGKLKI 320

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 8  EVKENDVCVKMLAAPINPSDINRI-EGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPG 66
               D  V+ LA     SDI+ + EG    R     + G+E VGEV  VGS V    PG
Sbjct: 21 APGPFDAIVRPLAVAPCTSDIHTVFEGAIGERH--NMILGHEAVGEVVEVGSEVKDFKPG 78

Query: 67 DWVI-PSPPSSGT 78
          D V+ P+      
Sbjct: 79 DRVVVPAITPDWR 91

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
          ++ P  +  E+ V +K+++  I  SD + + G    +     V G+E  GEV   G  V 
Sbjct: 24 MQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV--GLVLGHEITGEVIEKGRDVE 81

Query: 62 RLAPGDWVI 70
           L  GD V 
Sbjct: 82 NLQIGDLVS 90

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 46/252 (18%), Positives = 79/252 (31%), Gaps = 56/252 (22%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEV-------YS 55
            L   ++   DV V +  + +N  D   I G   +    P + G +  G V       + 
Sbjct: 19  HLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASEDPRFH 78

Query: 56  VGSAV------------------TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDS 97
            G  V                   R+  GDW++  P    +  + ++             
Sbjct: 79  AGQEVLLTGWGVGENHWGGLAERARV-KGDWLVALPAGLSSRNAMII------------- 124

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
                 T     +  +  LED         +V  GA+  VG   + +    G     +  
Sbjct: 125 -----GTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVS- 178

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKN--VKGLLANLPEPALGFNCVGGNSASKVLK 215
              G +     LK LGA+ + +  +        K L A         + VG    +KVL 
Sbjct: 179 ---GRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAG------AIDTVGDKVLAKVLA 229

Query: 216 FLSQGGTMVTYG 227
            ++ GG +   G
Sbjct: 230 QMNYGGCVAACG 241

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 99  MEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINII 156
              AAT  V  LTA   L +   L+ G+ ++ + AT  VG   + IA+  G  I++    
Sbjct: 13  DNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT--- 69

Query: 157 RDRAGSDEAKEKLKGLGADEVF 178
              AGSD  +E L  LG + V 
Sbjct: 70  ---AGSDAKREMLSRLGVEYVG 88

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++   E   NDV +++    +  SD++++   +      P V G+E VG V +VG  V +
Sbjct: 39  DITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA-GTVYPCVPGHEIVGRVVAVGDQVEK 97

Query: 63  LAPGDWV 69
            APGD V
Sbjct: 98  YAPGDLV 104

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%)

Query: 8  EVKENDVCVKMLAAPINPSDINRIEG-----VYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
          E    DV ++++   I  +D+++ +       YP+      V G+E VGEV  VGS V++
Sbjct: 31 ETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPM------VPGHEVVGEVVEVGSDVSK 84

Query: 63 LAPGDWV 69
             GD V
Sbjct: 85 FTVGDIV 91

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 6  PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAP 65
               E+ V +K+++  I  SD +   G + V      V G+E  GEV   GS V  +  
Sbjct: 27 NNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK--GHVLGHEITGEVVEKGSDVELMDI 84

Query: 66 GDWVI 70
          GD V 
Sbjct: 85 GDLVS 89

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 8  EVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGD 67
           V   DV + +L A I  SDI+     +      P + G+E  G +  VG  V +   GD
Sbjct: 26 AVGPRDVLIDILYAGICHSDIHSAYSEWK-EGIYPMIPGHEIAGIIKEVGKGVKKFKIGD 84

Query: 68 WV 69
           V
Sbjct: 85 VV 86

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 3  ELPPVEVKENDVCVKMLAAPINPSDINRIEG-----VYPVRPKVPAVGGYEGVGEVYSVG 57
                  E DV  K+L   +  SD++ I+      +YP+   VP   G+E VGEV  VG
Sbjct: 33 NFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPL---VP---GHEIVGEVTEVG 86

Query: 58 SAVTRLAPGDWV 69
          S V ++  GD V
Sbjct: 87 SKVKKVNVGDKV 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 55/324 (16%), Positives = 87/324 (26%), Gaps = 115/324 (35%)

Query: 12  NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWV-I 70
           ND             +++R++    +R                    A+  L P   V I
Sbjct: 121 NDN------QVFAKYNVSRLQPYLKLR-------------------QALLELRPAKNVLI 155

Query: 71  PSPPSSG-TW-QSYVVKDQSV---------WHKVSKDSPMEYAATIIVNPLTALRMLEDF 119
                SG TW    V     V         W  +   +          +P T L ML+  
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN----------SPETVLEMLQKL 205

Query: 120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFT 179
                   I  N  +             R  HS NI          + +L+ L   + + 
Sbjct: 206 LYQ-----IDPNWTS-------------RSDHSSNIKLR---IHSIQAELRRLLKSKPYE 244

Query: 180 ESQL---EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV 236
              L    V+N K         A   +C       K+L        + T      K +T 
Sbjct: 245 NCLLVLLNVQNAKAW------NAFNLSC-------KIL--------LTT----RFKQVTD 279

Query: 237 STSAFIFKDLSL----KGF-------WLQKWLSSEKATECRNM--IDYLLC-----LARE 278
             SA     +SL               L K+L        R +   +           R+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 279 GKLKYD-MELVPFNNFQTALSKAL 301
           G   +D  + V  +   T +  +L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSL 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 33/155 (21%)

Query: 178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS 237
           F   + + +    L          F+C        V        +      +      VS
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDC------KDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 238 TSAFIFKDLSLKG------F---WLQK---WLSSEKATECR----NMIDYLLC---LARE 278
            +  +F  L  K       F    L+    +L S   TE R        Y+     L  +
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 279 GKL--KYDME-LVPFNNFQTALSKA-----LGLHG 305
            ++  KY++  L P+   + AL +      + + G
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 2  IELPPVEVKENDVCVKMLAAPINPSDINRIEG-----VYPVRPKVPAVGGYEGVGEVYSV 56
           +  P    ++D+ +K+ A  +  SDI+   G       P+   V    G+E VG+V  +
Sbjct: 24 TKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPL---VV---GHEIVGKVVKL 77

Query: 57 GSAV-TRLAPGDWV 69
          G    + L  G  V
Sbjct: 78 GPKSNSGLKVGQRV 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	100.0
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.93
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.04
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.94
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.85
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.82
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.78
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.55
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.42
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.38
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.17
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.03
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.02
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.0
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.93
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.93
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.93
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.92
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.92
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.91
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.88
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.87
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.86
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.85
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.84
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.84
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.82
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.81
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.77
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.76
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.76
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.76
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.74
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.74
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.74
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.73
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.73
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.73
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.72
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.72
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.71
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.71
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.7
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.7
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.7
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.7
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.69
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.69
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.68
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.68
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.67
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.67
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.67
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.67
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.66
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.66
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.65
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.64
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.64
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.63
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.63
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.63
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.63
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.63
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.63
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.62
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.62
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.61
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.61
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.6
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.6
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.6
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.59
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.59
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.58
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.58
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.57
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.57
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.56
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.56
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.55
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.55
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.55
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.55
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.55
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.54
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.54
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.54
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.54
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.53
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.53
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.53
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.52
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.52
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.52
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.52
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.51
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.51
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.51
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.5
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.5
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.5
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.5
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.49
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.49
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.49
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.47
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.46
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.46
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.45
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.45
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.44
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.44
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.44
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.43
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.43
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.43
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.43
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.43
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.42
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.42
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.42
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.42
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.41
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.41
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.41
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.41
1spx_A	278	Short-chain reductase family member (5L265); paral	97.41
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.41
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.39
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.39
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.38
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.37
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.37
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.36
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.36
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.36
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.36
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.36
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.36
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.34
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.34
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.33
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.33
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.32
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.32
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.31
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.3
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.3
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.28
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.28
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.28
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.28
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.28
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.27
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.27
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.27
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.27
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.27
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.26
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.26
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.26
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.25
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.25
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.24
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.24
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.23
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.23
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.21
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.21
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.21
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.19
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.19
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.18
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.18
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.17
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.17
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.16
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.15
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.15
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.14
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.14
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.14
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.14
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.14
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.13
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.13
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.13
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.12
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.12
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.12
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.12
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.12
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.11
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.11
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.1
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.1
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.1
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.1
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.09
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.08
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.08
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.07
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.07
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.07
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.07
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.06
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.06
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.06
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.06
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.06
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.05
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.05
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.05
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.05
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.05
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.04
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.03
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.02
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.02
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.02
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.01
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.99
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.99
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.98
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.98
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.97
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.97
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.96
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.96
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.96
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.95
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.95
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.95
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.93
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.93
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.93
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.92
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.92
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.92
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.91
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.91
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.9
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.9
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.89
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.89
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.88
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.88
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.88
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.87
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.86
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.86
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.84
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.84
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.82
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.82
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.82
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.82
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.77
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.77
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.76
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.75
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.74
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.74
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.74
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.74
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.73
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.73
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.72
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.72
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.72
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.71
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.71
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.71
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.69
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.67
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.67
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.67
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.67
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.67
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.64
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.63
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.63
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.62
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.61
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.58
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.56
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.55
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.54
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.52
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	96.5
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.5
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.47
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.46
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.45
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.45
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.43
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.41
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.41
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.41
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.4
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.39
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.39
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.38
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.38
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.38
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.35
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.32
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.32
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	96.32
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.29
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.27
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.27
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.24
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	96.23
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.2
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.2
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	96.19
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.17
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.17
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.17
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.16
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	96.15
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.13
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.1
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.07
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.06
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.06
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.02
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.01
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.01
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	95.99
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	95.96
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.95
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.95
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	95.93
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	95.9
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.89
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	95.88
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.86
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.86
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	95.86
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	95.86
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.85
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.85
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.84
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.82
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	95.8
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.78
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	95.78
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.77
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.77
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	95.76
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.76
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	95.75
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	95.74
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.71
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.7
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.65
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.63
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.63
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.61
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.6
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.59
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.59
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.59
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.58
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	95.58
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.57
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	95.54
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.54
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.5
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.49
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	95.48
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.45
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.45
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.45
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	95.42
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.42
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.41
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	95.37
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.37
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.37
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	95.34
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	95.33
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.33
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	95.33
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.33
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.3
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.29
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.24
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.21
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.21
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	95.19
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.18
4f6c_A	427	AUSA reductase domain protein; thioester reductase	95.15
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.14
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.14
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.13
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.13
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	95.03
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.02
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.0
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	94.98
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	94.96
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.93
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	94.92
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.87
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.87
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	94.86
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.84
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	94.83
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.82
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	94.81
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	94.81
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	94.8
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.78
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	94.78
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	94.77
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	94.76
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	94.76
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	94.74
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	94.72
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	94.69
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	94.69
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.69
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.69

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=1.1e-56  Score=393.80  Aligned_cols=312  Identities=46%  Similarity=0.786  Sum_probs=270.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|++|++|++||+|++.....|+|+|
T Consensus        45 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~ae  124 (357)
T 1zsy_A           45 KNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRT  124 (357)
T ss_dssp             EEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSSCSCCSBS
T ss_pred             eeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCCCCCCCCCCEEEEcCCCCcccee
Confidence            57889999999999999999999999999999776544679999999999999999999999999999998644699999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+|+.+|++++++++....
T Consensus       125 y~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~  204 (357)
T 1zsy_A          125 EAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPD  204 (357)
T ss_dssp             EEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSC
T ss_pred             EEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999876444


Q ss_pred             cHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF  241 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  241 (314)
                      ++++++.++++|+++++++++.+.+.+.+.+.+.+++|++|||+|++....++++++++|+++.+|...+.+..++...+
T Consensus       205 ~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~  284 (357)
T 1zsy_A          205 IQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLL  284 (357)
T ss_dssp             HHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCCCTTCCBCCCHHHH
T ss_pred             hHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEecCCCCCCCCCHHHH
Confidence            45677889999999999876543345666665543499999999998877899999999999999866555555666667


Q ss_pred             eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.+++++.+++...+.....+...++.++++++++++|++++.+ ++|+++++++||+.+.+++..| |+|+++
T Consensus       285 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~g-Kvvl~~  357 (357)
T 1zsy_A          285 IFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISS-KQILTM  357 (357)
T ss_dssp             HHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSS-EEEEEC
T ss_pred             HhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCCCCC-cEEEeC
Confidence            77999999988765533334556677899999999999999875 7899999999999999988777 999975

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=2.8e-55  Score=384.09  Aligned_cols=305  Identities=20%  Similarity=0.222  Sum_probs=270.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|++|++|++||+|+++.. .|+|+|
T Consensus        46 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-~G~~ae  124 (353)
T 4dup_A           46 GKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLAN-GGAYAE  124 (353)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEECS-SCCSBS
T ss_pred             EeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCCCCCCCCCCEEEEecC-CCceee
Confidence            5788999999999999999999999999999988766678999999999999999999999999999999765 599999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||+++.+++|||+++.+.+++++|++|||+|++|++|++++|+|+..|++++++.+    
T Consensus       125 y~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~----  200 (353)
T 4dup_A          125 YCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG----  200 (353)
T ss_dssp             EEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----
T ss_pred             EEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC----
Confidence            9999999999999999999999999999999999988899999999999998899999999999999999888874    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcc-cccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT-VSTS  239 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~  239 (314)
                      ++++++.++++|++.++++++.. .+.+++.+ +.+ +|++|||+|++.+..++++|+++|+++.+|...+.... ++..
T Consensus       201 ~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~-~~g-~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~  278 (353)
T 4dup_A          201 STGKCEACERLGAKRGINYRSEDFAAVIKAET-GQG-VDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLS  278 (353)
T ss_dssp             SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH-SSC-EEEEEESCCGGGHHHHHHTEEEEEEEEECCCTTCSEEEEEECH
T ss_pred             CHHHHHHHHhcCCCEEEeCCchHHHHHHHHHh-CCC-ceEEEECCCHHHHHHHHHHhccCCEEEEEEecCCCcccCCCHH
Confidence            78889999999999999987654 46688877 544 99999999999889999999999999999976655444 6677


Q ss_pred             cceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          240 AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++.+++++.|+++..+.....+....+.++.+++++++|++++.+ ++|+++++++||+.+.+++..| |+||++
T Consensus       279 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~g-Kvvl~~  353 (353)
T 4dup_A          279 PIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVG-KVMLTV  353 (353)
T ss_dssp             HHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHTCCSS-EEEEEC
T ss_pred             HHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhCCCCc-eEEEeC
Confidence            7888999999988765432222333455588999999999999875 6899999999999999999888 999986

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=3.9e-55  Score=381.55  Aligned_cols=303  Identities=22%  Similarity=0.227  Sum_probs=263.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++++ |++||+|+++.. .|+|+|
T Consensus        39 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~-~~vGDrV~~~~~-~G~~ae  116 (342)
T 4eye_A           39 TDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-IKPGDRVMAFNF-IGGYAE  116 (342)
T ss_dssp             EEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTTSS-CCTTCEEEEECS-SCCSBS
T ss_pred             EeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCCCC-CCCCCEEEEecC-CCcceE
Confidence            578899999999999999999999999999998776567899999999999999999999 999999999865 599999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||+++.+++|||+++.+.+++++|++|||+|++|++|++++|+|+..|++++++.+    
T Consensus       117 y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~----  192 (342)
T 4eye_A          117 RVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVN----  192 (342)
T ss_dssp             EEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----
T ss_pred             EEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC----
Confidence            9999999999999999999999999999999999988899999999999999999999999999999999988884    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF  241 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  241 (314)
                      ++++++.++++|+++++++++...+.+++.+++.+ +|++|||+|++.+..++++++++|+++.+|...+....++...+
T Consensus       193 ~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g-~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~  271 (342)
T 4eye_A          193 RTAATEFVKSVGADIVLPLEEGWAKAVREATGGAG-VDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRL  271 (342)
T ss_dssp             SGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSC-EEEEEESCC--CHHHHHHTEEEEEEEEEC----------CCCCG
T ss_pred             CHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCC-ceEEEECCchhHHHHHHHhhcCCCEEEEEEccCCCCCccCHHHH
Confidence            67788899999999999998555677888888776 99999999999899999999999999999966554445666778


Q ss_pred             eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.+++++.|++...+.. ..++...+.++.+++++++| +++.+ +.|+++++++||+.+.+++..| |+||++
T Consensus       272 ~~~~~~i~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvl~P  342 (342)
T 4eye_A          272 LLRNASLIGVAWGEFLR-THADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKVYG-KMVLVP  342 (342)
T ss_dssp             GGTTCEEEECCHHHHHH-HCTTHHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTCCCS-EEEEEC
T ss_pred             hhcCCEEEEEehhhhhh-cCHHHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCCCCc-eEEEeC
Confidence            88999999988765532 23455667899999999999 88775 6899999999999999999888 999974

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.9e-54  Score=374.93  Aligned_cols=304  Identities=24%  Similarity=0.281  Sum_probs=269.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++. +.+|.++|||++|+|+++|++|++|++||+|++.....|+|+|
T Consensus        19 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~ae   97 (325)
T 3jyn_A           19 VDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSE   97 (325)
T ss_dssp             EEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESSSSSCCSBS
T ss_pred             eecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEecCCCccccc
Confidence            578899999999999999999999999999998765 4689999999999999999999999999999998755799999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||+++..++|||+++.+.+++++|++|||+|++|++|++++|+|+..|++++++.+    
T Consensus        98 y~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~----  173 (325)
T 3jyn_A           98 VHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS----  173 (325)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES----
T ss_pred             eEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC----
Confidence            9999999999999999999999999999999999999899999999999998899999999999999999888884    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ++++++.++++|+++++|+.+.. .+.+++.+++.+ +|++|||+|.+.+..++++++++|+++.+|...+....++...
T Consensus       174 ~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g-~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~  252 (325)
T 3jyn_A          174 SPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKK-CPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGPVSGVNLGI  252 (325)
T ss_dssp             SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCC-EEEEEESSCGGGHHHHHTTEEEEEEEEECCCTTCCCCSCCTHH
T ss_pred             CHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCC-ceEEEECCChHHHHHHHHHhcCCCEEEEEecCCCCCCCCCHHH
Confidence            78889999999999999987654 477888888776 9999999999888999999999999999997654433455555


Q ss_pred             ceec-ceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          241 FIFK-DLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.+ .+++.+..+..+.  .++.++++.++++++++++|++++.+ +.|+++++++||+.+.+++..| |+||++
T Consensus       253 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~G-kvvl~p  325 (325)
T 3jyn_A          253 LAQKDSVYVTRPTLGSYA--NNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTG-STILIP  325 (325)
T ss_dssp             HHHTTSCEEECCCHHHHS--CSTTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHHTTCCCS-CEEEEC
T ss_pred             HhhcCcEEEEeeeeeeec--CCHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHHHHHHHHcCCCCc-eEEEeC
Confidence            5555 6777766655542  24566778889999999999999874 6899999999999999999998 999874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=3.6e-54  Score=374.67  Aligned_cols=301  Identities=23%  Similarity=0.304  Sum_probs=271.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++.  .+|.++|||++|+|+++|++|++|++||+|+++.  .|+|+|
T Consensus        26 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~--~G~~ae  101 (334)
T 3qwb_A           26 EDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGVTNFEVGDQVAYIS--NSTFAQ  101 (334)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC--CSSEECCSEEEEEEEEECTTCCSCCTTCEEEEEC--SSCSBS
T ss_pred             EeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCccccceEEEEEEECCCCCCCCCCCEEEEee--CCcceE
Confidence            577889999999999999999999999999998763  5799999999999999999999999999999987  699999


Q ss_pred             eEeee-ccceEEcCCCCCHHH---hhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311           82 YVVKD-QSVWHKVSKDSPMEY---AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus        82 ~~~~~-~~~~~~~p~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      |++++ ++.++++|+++++++   +|++++.++|||+++.+.+++++|++|||+|++|++|++++|+|+..|++++++.+
T Consensus       102 y~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~  181 (334)
T 3qwb_A          102 YSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS  181 (334)
T ss_dssp             EEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            99999 999999999999999   88889999999999998889999999999998899999999999999999888884


Q ss_pred             CCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccc
Q 021311          158 DRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV  236 (314)
Q Consensus       158 ~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  236 (314)
                          ++++++.++++|+++++++++.. .+.+++.+++.+ +|++|||+|.+.+..++++++++|+++.+|...+....+
T Consensus       182 ----~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g-~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~  256 (334)
T 3qwb_A          182 ----TDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKG-VDASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPF  256 (334)
T ss_dssp             ----SHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSC-EEEEEECCGGGGHHHHHHHEEEEEEEEECCCTTCCCCCB
T ss_pred             ----CHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCC-ceEEEECCChHHHHHHHHHhccCCEEEEEcCCCCCCCCc
Confidence                68889999999999999987654 477888887776 999999999988899999999999999999766544466


Q ss_pred             ccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          237 STSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +...++.+++++.++++..+..  .+..+.+.++++++++++|++++.+ +.|+++++++||+.+.+++..| |+|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvi~~  332 (334)
T 3qwb_A          257 SITRLSPKNITLVRPQLYGYIA--DPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVG-KLVLEI  332 (334)
T ss_dssp             CGGGGTTTTCEEECCCGGGGSC--SHHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCCB-EEEEEC
T ss_pred             chhhhhhCceEEEEEEeccccC--CHHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCCCce-EEEEec
Confidence            6777888999999887766533  4667778899999999999999875 6899999999999999998888 999975

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=1.5e-54  Score=380.86  Aligned_cols=296  Identities=26%  Similarity=0.275  Sum_probs=264.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++|+|.|+|+++||+|||.++|||++|++++.|.++....+|.++|||++|+|+++|++|++|++||+|++.+.      
T Consensus        43 ~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g  122 (363)
T 3uog_A           43 LAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDG  122 (363)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSTTCCSS
T ss_pred             EEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCCCCCCCCEEEEecccccccc
Confidence            35788999999999999999999999999999987755578999999999999999999999999999998621      


Q ss_pred             -----------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHH
Q 021311           75 -----------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIV  137 (314)
Q Consensus        75 -----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~  137 (314)
                                       .+|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+| +|++
T Consensus       123 ~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~v  201 (363)
T 3uog_A          123 LRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQG-TGGV  201 (363)
T ss_dssp             SCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEES-SBHH
T ss_pred             ccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHH
Confidence                             2599999999999999999999999999999999999999998779999999999999 5999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHh
Q 021311          138 GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKF  216 (314)
Q Consensus       138 G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~  216 (314)
                      |++++|+|+.+|++++++..    ++++++.++++|+++++|... ...+.+++.+++.+ +|++|||+|.+.+..++++
T Consensus       202 G~~a~qla~~~Ga~Vi~~~~----~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g-~D~vid~~g~~~~~~~~~~  276 (363)
T 3uog_A          202 ALFGLQIAKATGAEVIVTSS----SREKLDRAFALGADHGINRLEEDWVERVYALTGDRG-ADHILEIAGGAGLGQSLKA  276 (363)
T ss_dssp             HHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCC-EEEEEEETTSSCHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEec----CchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCC-ceEEEECCChHHHHHHHHH
Confidence            99999999999999888873    788999999999999999553 34577888888876 9999999998888999999


Q ss_pred             cccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHH
Q 021311          217 LSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQT  295 (314)
Q Consensus       217 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~  295 (314)
                      ++++|+++.+|...+...+++...++.+++++.|++...          .+.++++++++++|++++.+ ++|+++++++
T Consensus       277 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~  346 (363)
T 3uog_A          277 VAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGH----------RRALEDLVGAVDRLGLKPVIDMRYKFTEVPE  346 (363)
T ss_dssp             EEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCC----------HHHHHHHHHHHHHHTCCCCEEEEEEGGGHHH
T ss_pred             hhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCC----------HHHHHHHHHHHHcCCCccceeeEEcHHHHHH
Confidence            999999999997665556677777888999999986542          25688899999999998875 6899999999


Q ss_pred             HHHHHhccCCCCCceEeeC
Q 021311          296 ALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       296 a~~~~~~~~~~~~k~vi~~  314 (314)
                      ||+.+.+++ .| |+||+|
T Consensus       347 A~~~~~~~~-~g-Kvvi~~  363 (363)
T 3uog_A          347 ALAHLDRGP-FG-KVVIEF  363 (363)
T ss_dssp             HHHTGGGCC-SB-EEEEEC
T ss_pred             HHHHHHcCC-Cc-cEEEeC
Confidence            999999988 76 999986

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=8e-54  Score=373.28  Aligned_cols=304  Identities=25%  Similarity=0.369  Sum_probs=263.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|++|++||+|+++.. .|+|+|
T Consensus        23 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-~G~~ae  101 (340)
T 3gms_A           23 EYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLRG-EGTWQE  101 (340)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSCGGGTTCEEEECSS-SCSSBS
T ss_pred             EecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEecCC-Ccccee
Confidence            5788999999999999999999999999999987765578999999999999999999999999999998854 699999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||++++.++|||+++.+.+++++|++|||+|++|++|++++|+|+..|++++++.+    
T Consensus       102 y~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~----  177 (340)
T 3gms_A          102 YVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTR----  177 (340)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES----
T ss_pred             EEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC----
Confidence            9999999999999999999999999999999999988899999999999999889999999999999999888874    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ++++++.++++|+++++|+.+.. .+.+++.+++.+ +|++|||+|.+.....+++|+++|+++.+|...+...+.  ..
T Consensus       178 ~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g-~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~--~~  254 (340)
T 3gms_A          178 NNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIG-ADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQVNW--AE  254 (340)
T ss_dssp             SSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC-EEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTSCCCCH--HH
T ss_pred             CHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCC-CcEEEECCCChhHHHHHHHhcCCCEEEEEeecCCCCCCH--HH
Confidence            56778889999999999987654 467888888776 999999999988878889999999999999765443322  22


Q ss_pred             ce-ecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc--ceeeccccHHHHHHHHhccCCC-CCceEeeC
Q 021311          241 FI-FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD--MELVPFNNFQTALSKALGLHGS-QPKQVIKF  314 (314)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~~~~~~~a~~~~~~~~~~-~~k~vi~~  314 (314)
                      +. ..++++..+++..+.....+....+.++++++++++|++++.  ++.|+++++++||+.+.+++.. | |+|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~~~~G-Kvvl~~  331 (340)
T 3gms_A          255 IVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKG-KVFLTS  331 (340)
T ss_dssp             HHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTTCCSS-EEEEEC
T ss_pred             hhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcCCCCC-eEEEEE
Confidence            21 245666666655543333456667889999999999999974  5689999999999999998854 7 999975

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=3.3e-53  Score=370.26  Aligned_cols=295  Identities=21%  Similarity=0.230  Sum_probs=262.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC-CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~-~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      ++|+|.|+|+++||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++|++|++||+|++.+.     
T Consensus        15 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~   94 (345)
T 3jv7_A           15 VVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGA   94 (345)
T ss_dssp             EEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCTTCEEEECCSCCCSS
T ss_pred             EEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCCCCEEEEecCCCCCC
Confidence            3678999999999999999999999999999987653 2368999999999999999999999999999998531     


Q ss_pred             --------------------------CCCcccceEeee-ccceEEcCCCCCHHHhhcccccHHHHHHHHHH-hhcCCCCC
Q 021311           75 --------------------------SSGTWQSYVVKD-QSVWHKVSKDSPMEYAATIIVNPLTALRMLED-FTTLNSGD  126 (314)
Q Consensus        75 --------------------------~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~  126 (314)
                                                ..|+|+||++++ ++.++++|+ +++++||+++++++|||+++.+ ..++++|+
T Consensus        95 C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~  173 (345)
T 3jv7_A           95 CHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGS  173 (345)
T ss_dssp             SHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTC
T ss_pred             ChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCC
Confidence                                      269999999999 999999999 9999999999999999999988 45899999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|||+|+ |++|++++|+|+.+ +++++++.    .++++++.++++|++++++++++..+.+++++++.+ +|++|||+
T Consensus       174 ~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~----~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g-~d~v~d~~  247 (345)
T 3jv7_A          174 TAVVIGV-GGLGHVGIQILRAVSAARVIAVD----LDDDRLALAREVGADAAVKSGAGAADAIRELTGGQG-ATAVFDFV  247 (345)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCCCEEEEEE----SCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGC-EEEEEESS
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEEc----CCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCC-CeEEEECC
Confidence            9999998 99999999999999 56777766    378999999999999999998866788999998876 99999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD  284 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  284 (314)
                      |++ .+..++++|+++|+++.+|...+...+++. .++.+++++.+++...          .+.++++++++++|++++.
T Consensus       248 G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~  316 (345)
T 3jv7_A          248 GAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGT----------RSELMEVVALARAGRLDIH  316 (345)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCC----------HHHHHHHHHHHHTTCCCCC
T ss_pred             CCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCC----------HHHHHHHHHHHHcCCCceE
Confidence            997 679999999999999999976654555664 7778999999876543          2568899999999999998


Q ss_pred             ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 ~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.|+++++++||+.+.+++..| |+||++
T Consensus       317 ~~~~~l~~~~~A~~~~~~~~~~G-kvvv~p  345 (345)
T 3jv7_A          317 TETFTLDEGPAAYRRLREGSIRG-RGVVVP  345 (345)
T ss_dssp             EEEECSTTHHHHHHHHHHTCCSS-EEEECC
T ss_pred             EEEEcHHHHHHHHHHHHcCCCce-eEEeCC
Confidence            88999999999999999999888 999975

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=3e-53  Score=371.22  Aligned_cols=293  Identities=20%  Similarity=0.229  Sum_probs=258.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++|+|.|+|+|+||||||.|+|||++|++++.|.++.  ++|.++|||++|+|+++|++|++|++||+|.+.+.      
T Consensus        16 l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~--~~p~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~g~   93 (348)
T 4eez_A           16 LVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGH   93 (348)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC--CTTCBCCSEEEEEEEEECTTCCSCCTTCEEEEESEEECCSS
T ss_pred             EEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC--CCCcccceeEEEEEEEECceeeecccCCeEeecccccccCc
Confidence            4688999999999999999999999999999998765  67999999999999999999999999999976421      


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                           .+|+|+||++++++.++++|+++++++||+++.++.|||+++.. +++++|++|||+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga  172 (348)
T 4eez_A           94 CEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKV-SGVKPGDWQVIFGA  172 (348)
T ss_dssp             SHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECC
T ss_pred             cccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeeecc-cCCCCCCEEEEEcC
Confidence                                 16999999999999999999999999999999999999999965 88999999999998


Q ss_pred             CcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCcc-H
Q 021311          134 TSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNS-A  210 (314)
Q Consensus       134 ~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~-~  210 (314)
                       |++|.+++|+++.+ |++++++.    .++++++.++++|+++++|+++.+ .+++++.+++.| +|.+++|+++.. +
T Consensus       173 -G~~g~~a~~~a~~~~g~~Vi~~~----~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g-~d~~~~~~~~~~~~  246 (348)
T 4eez_A          173 -GGLGNLAIQYAKNVFGAKVIAVD----INQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLG-VQSAIVCAVARIAF  246 (348)
T ss_dssp             -SHHHHHHHHHHHHTSCCEEEEEE----SCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSC-EEEEEECCSCHHHH
T ss_pred             -CCccHHHHHHHHHhCCCEEEEEE----CcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCC-ceEEEEeccCcchh
Confidence             88999999999876 56777776    378889999999999999998754 578999999887 999999998865 4


Q ss_pred             HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeecc
Q 021311          211 SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPF  290 (314)
Q Consensus       211 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  290 (314)
                      ..++++++++|+++.+|.. .....++...++.+++++.|+..+..          ..++++++++++|++++.++.|+|
T Consensus       247 ~~~~~~l~~~G~~v~~g~~-~~~~~~~~~~~~~~~~~i~gs~~~~~----------~~~~~~~~l~~~g~i~p~~~~~~l  315 (348)
T 4eez_A          247 EQAVASLKPMGKMVAVAVP-NTEMTLSVPTVVFDGVEVAGSLVGTR----------LDLAEAFQFGAEGKVKPIVATRKL  315 (348)
T ss_dssp             HHHHHTEEEEEEEEECCCC-SCEEEECHHHHHHSCCEEEECCSCCH----------HHHHHHHHHHHTTSCCCCEEEECG
T ss_pred             heeheeecCCceEEEEecc-CCCCccCHHHHHhCCeEEEEEecCCH----------HHHHHHHHHHHcCCCEEEEEEEeH
Confidence            8999999999999999854 34456677778889999999765432          457888999999999998899999


Q ss_pred             ccHHHHHHHHhccCCCCCceEeeC
Q 021311          291 NNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       291 ~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++||+.+++++..| |+||+|
T Consensus       316 ~~~~~A~~~l~~g~~~G-KvVl~~  338 (348)
T 4eez_A          316 EEINDIIDEMKAGKIEG-RMVIDF  338 (348)
T ss_dssp             GGHHHHHHHHHTTCCSS-EEEEEC
T ss_pred             HHHHHHHHHHHCCCCcc-EEEEEc
Confidence            99999999999999998 999986

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=5.7e-53  Score=368.04  Aligned_cols=303  Identities=22%  Similarity=0.266  Sum_probs=262.1

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCC-CCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC----C
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVR-PKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP----S   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~-~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~----~   75 (314)
                      ++++|.|+|+++||+|||.++|||++|++++.|..+.. ..+|.++|||++|+|+++|++|++|++||+|+++..    .
T Consensus        22 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~g~~~~  101 (343)
T 3gaz_A           22 LRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGL  101 (343)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCSSTTC
T ss_pred             EEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeCCCCCC
Confidence            35789999999999999999999999999998865322 468999999999999999999999999999998753    2


Q ss_pred             CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEE
Q 021311           76 SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI  155 (314)
Q Consensus        76 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~  155 (314)
                      .|+|+||++++++.++++|+++++++||+++.+++|||+++.+.+++++|++|||+|++|++|++++|+|+..|++++++
T Consensus       102 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~  181 (343)
T 3gaz_A          102 QGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT  181 (343)
T ss_dssp             CCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence            69999999999999999999999999999999999999999777999999999999988999999999999999998888


Q ss_pred             ecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcc
Q 021311          156 IRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT  235 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  235 (314)
                      .     ++++++.++++|++. ++..++..+.+++.+++.+ +|++|||+|++.+..++++|+++|+++.+|...    .
T Consensus       182 ~-----~~~~~~~~~~lGa~~-i~~~~~~~~~~~~~~~~~g-~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~----~  250 (343)
T 3gaz_A          182 A-----RGSDLEYVRDLGATP-IDASREPEDYAAEHTAGQG-FDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWG----T  250 (343)
T ss_dssp             E-----CHHHHHHHHHHTSEE-EETTSCHHHHHHHHHTTSC-EEEEEESSCTHHHHHHHHHEEEEEEEEESCCCS----C
T ss_pred             e-----CHHHHHHHHHcCCCE-eccCCCHHHHHHHHhcCCC-ceEEEECCCcHHHHHHHHHHhcCCeEEEEcccC----c
Confidence            4     678899999999998 7744445577888888776 999999999988899999999999999998554    2


Q ss_pred             cccccceecceEEEEEechh-hccccCHHHHHHHHHHHHHHHHcCCccccc--eeeccccHHHHHHHHhccCCCC---Cc
Q 021311          236 VSTSAFIFKDLSLKGFWLQK-WLSSEKATECRNMIDYLLCLAREGKLKYDM--ELVPFNNFQTALSKALGLHGSQ---PK  309 (314)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~a~~~~~~~~~~~---~k  309 (314)
                      ++...++.+++++.+++... ++....+....+.++++++++++|++++.+  +.|+++++++||+.+.+++..|   +|
T Consensus       251 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK  330 (343)
T 3gaz_A          251 HKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGK  330 (343)
T ss_dssp             CCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSB
T ss_pred             cccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccce
Confidence            34455667999999976532 222344566778899999999999999875  4799999999999999987632   49


Q ss_pred             eEeeC
Q 021311          310 QVIKF  314 (314)
Q Consensus       310 ~vi~~  314 (314)
                      +|+++
T Consensus       331 ~v~~~  335 (343)
T 3gaz_A          331 IAITV  335 (343)
T ss_dssp             CEEEC
T ss_pred             EEEEe
Confidence            99875

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=4.4e-53  Score=372.20  Aligned_cols=310  Identities=37%  Similarity=0.596  Sum_probs=263.2

Q ss_pred             ccCCCCCCC--CCcEEEEEEeecCChhhhhhhccCCCCCCCCC---------ccCCcceEEEEEEecCCCCCCCCCCEEe
Q 021311            2 IELPPVEVK--ENDVCVKMLAAPINPSDINRIEGVYPVRPKVP---------AVGGYEGVGEVYSVGSAVTRLAPGDWVI   70 (314)
Q Consensus         2 ~~~~~p~~~--~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p---------~~~G~e~~G~V~~~G~~v~~~~~Gd~V~   70 (314)
                      +++|.|+|+  ++||+|||.++|||++|++.+.|.++..+.+|         .++|||++|+|+++|++|++|++||+|+
T Consensus        22 ~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~G~V~~vG~~v~~~~vGdrV~  101 (364)
T 1gu7_A           22 QSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVI  101 (364)
T ss_dssp             EEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEEE
T ss_pred             eeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeEEEEEEeCCCCCcCCCCCEEE
Confidence            466777776  99999999999999999999998766434567         8999999999999999999999999999


Q ss_pred             eCCCCCCcccceEeeeccceEEcCC-----------CCCHHHhhcccccHHHHHHHHHHhhcCCCC-CEEEEcCCCcHHH
Q 021311           71 PSPPSSGTWQSYVVKDQSVWHKVSK-----------DSPMEYAATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVG  138 (314)
Q Consensus        71 ~~~~~~g~~~~~~~~~~~~~~~~p~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI~g~~g~~G  138 (314)
                      +.....|+|+||++++++.++++|+           ++++++||+++++++|||+++.+.+++++| ++|||+|++|++|
T Consensus       102 ~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG  181 (364)
T 1gu7_A          102 PSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVG  181 (364)
T ss_dssp             ESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHH
T ss_pred             ecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHH
Confidence            9864469999999999999999999           899999999999999999999887799999 9999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh----hhHHHHHHHh--cCCCCCcEEEecCCCccHHH
Q 021311          139 QCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ----LEVKNVKGLL--ANLPEPALGFNCVGGNSASK  212 (314)
Q Consensus       139 ~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~----~~~~~i~~~~--~~~g~~d~v~d~~g~~~~~~  212 (314)
                      ++++|+|+.+|++++++++..+...++++.++++|+++++++++    +..+.+++.+  ++.+ +|++|||+|++....
T Consensus       182 ~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g-~Dvvid~~G~~~~~~  260 (364)
T 1gu7_A          182 KYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE-AKLALNCVGGKSSTG  260 (364)
T ss_dssp             HHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC-EEEEEESSCHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC-ceEEEECCCchhHHH
Confidence            99999999999999988854221123467788999999999874    3456788887  5555 999999999988778


Q ss_pred             HHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeecc-
Q 021311          213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPF-  290 (314)
Q Consensus       213 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~-  290 (314)
                      ++++++++|+++.+|........++...++.+++++.+++...+.. ..+....+.++++++++++|++++. ...+++ 
T Consensus       261 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~  339 (364)
T 1gu7_A          261 IARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLK-NNKELKTSTLNQIIAWYEEGKLTDAKSIETLYD  339 (364)
T ss_dssp             HHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHT-TCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECC
T ss_pred             HHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcc-cCHHHHHHHHHHHHHHHHcCCcccccceEEecC
Confidence            8999999999999997655455566666777999999987765433 2355566789999999999999985 345555 


Q ss_pred             --ccHHHHHHHHhccCCCCCceEeeC
Q 021311          291 --NNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       291 --~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                        +++++||+.+.+++..| |+||+|
T Consensus       340 ~l~~~~~A~~~~~~~~~~g-Kvvv~~  364 (364)
T 1gu7_A          340 GTKPLHELYQDGVANSKDG-KQLITY  364 (364)
T ss_dssp             SSSCHHHHHHHHHHTGGGS-CEEEEC
T ss_pred             chhhHHHHHHHHHhCCCCc-eEEEeC
Confidence              59999999999887777 999986

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-52  Score=365.63  Aligned_cols=301  Identities=23%  Similarity=0.323  Sum_probs=262.6

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|++|++|++||+|++.....|+|+|
T Consensus        48 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~ae  127 (351)
T 1yb5_A           48 SDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAE  127 (351)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCCSSCSSBS
T ss_pred             eecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCCCCCCCCCEEEEeCCCCCccee
Confidence            46788999999999999999999999999998765445689999999999999999999999999999998654699999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||+++.++.|||+++.+.+++++|++|||+|++|++|++++|+++..|++++++.+    
T Consensus       128 y~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~----  203 (351)
T 1yb5_A          128 YALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG----  203 (351)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----
T ss_pred             EEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----
Confidence            9999999999999999999999999999999999987799999999999999999999999999999999888874    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ++++.+.++++|++.++|+.+.. .+.+++.+++.+ +|++|||+|.+.+..++++++++|+++.+|..  ....++...
T Consensus       204 ~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~-~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~~--~~~~~~~~~  280 (351)
T 1yb5_A          204 TEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG-IDIIIEMLANVNLSKDLSLLSHGGRVIVVGSR--GTIEINPRD  280 (351)
T ss_dssp             SHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHEEEEEEEEECCCC--SCEEECTHH
T ss_pred             ChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCC-cEEEEECCChHHHHHHHHhccCCCEEEEEecC--CCCccCHHH
Confidence            67888899999999999987654 467888777665 99999999988788999999999999999953  234455566


Q ss_pred             ceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHH-HhccCCCCCceEeeC
Q 021311          241 FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSK-ALGLHGSQPKQVIKF  314 (314)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~-~~~~~~~~~k~vi~~  314 (314)
                      ++.+++++.|+++..    ..+.++.+.++.+.+++.+|++++.+ +.|+++++++||+. +.+++..| |+|+++
T Consensus       281 ~~~~~~~i~g~~~~~----~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~~g-Kvvi~~  351 (351)
T 1yb5_A          281 TMAKESSIIGVTLFS----STKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATG-KMILLL  351 (351)
T ss_dssp             HHTTTCEEEECCGGG----CCHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHHHHHHHHSSCCSS-EEEEEC
T ss_pred             HHhCCcEEEEEEeec----CCHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHHHHHHHHhCCCCe-EEEEeC
Confidence            778999999976532    23566778889999999999998875 68999999999999 55555666 999975

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=8.3e-53  Score=367.01  Aligned_cols=293  Identities=21%  Similarity=0.293  Sum_probs=258.0

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEee-CC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIP-SP------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~-~~------   73 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.|.++..+++|.++|||++|+|+++|++|++|++||+|.. ++      
T Consensus        17 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~   96 (340)
T 3s2e_A           17 IDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGY   96 (340)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCTTCEEEEESEEECCSS
T ss_pred             EEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCCCCEEEecCCCCCCCC
Confidence            36789999999999999999999999999999988765678999999999999999999999999999953 11      


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ..+|+|+||++++++.++++|+++++++||++++++.|||+++.+ +++++|++|||+|+
T Consensus        97 C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga  175 (340)
T 3s2e_A           97 CEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKV-TDTRPGQWVVISGI  175 (340)
T ss_dssp             SHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHHHT-TTCCTTSEEEEECC
T ss_pred             ChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHHHH-cCCCCCCEEEEECC
Confidence                                126999999999999999999999999999999999999999954 89999999999998


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCc-cHH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGN-SAS  211 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~-~~~  211 (314)
                       |++|++++|+|+.+|++++++..    ++++++.++++|+++++|+++.. .+.+++ +.+  ++|++|||+|.. .+.
T Consensus       176 -G~vG~~a~qla~~~Ga~Vi~~~~----~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~-~~g--~~d~vid~~g~~~~~~  247 (340)
T 3s2e_A          176 -GGLGHVAVQYARAMGLRVAAVDI----DDAKLNLARRLGAEVAVNARDTDPAAWLQK-EIG--GAHGVLVTAVSPKAFS  247 (340)
T ss_dssp             -STTHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHTTCSEEEETTTSCHHHHHHH-HHS--SEEEEEESSCCHHHHH
T ss_pred             -CHHHHHHHHHHHHCCCeEEEEeC----CHHHHHHHHHcCCCEEEeCCCcCHHHHHHH-hCC--CCCEEEEeCCCHHHHH
Confidence             99999999999999999888873    78999999999999999998754 456766 555  499999999874 558


Q ss_pred             HHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccc
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFN  291 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  291 (314)
                      .++++++++|+++.+|... .+.+++...++.+++++.+++...          .+.++++++++++|++++.++.++|+
T Consensus       248 ~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~~~~~~l~  316 (340)
T 3s2e_A          248 QAIGMVRRGGTIALNGLPP-GDFGTPIFDVVLKGITIRGSIVGT----------RSDLQESLDFAAHGDVKATVSTAKLD  316 (340)
T ss_dssp             HHHHHEEEEEEEEECSCCS-SEEEEEHHHHHHTTCEEEECCSCC----------HHHHHHHHHHHHTTSCCCCEEEECGG
T ss_pred             HHHHHhccCCEEEEeCCCC-CCCCCCHHHHHhCCeEEEEEecCC----------HHHHHHHHHHHHhCCCCceEEEEeHH
Confidence            9999999999999998554 345566667778999999976543          25688999999999999999999999


Q ss_pred             cHHHHHHHHhccCCCCCceEeeC
Q 021311          292 NFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       292 ~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++||+.+.+++..| |+||++
T Consensus       317 ~~~~A~~~~~~~~~~G-kvvv~~  338 (340)
T 3s2e_A          317 DVNDVFGRLREGKVEG-RVVLDF  338 (340)
T ss_dssp             GHHHHHHHHHTTCCCS-EEEEEC
T ss_pred             HHHHHHHHHHcCCCce-EEEEec
Confidence            9999999999999888 999975

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=5.2e-53  Score=369.83  Aligned_cols=306  Identities=22%  Similarity=0.266  Sum_probs=259.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCC-CCCCCCCEEeeCCCCCCccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV-TRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v-~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|++| ++|++||+|+++.. .|+|+
T Consensus        40 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~~-~G~~a  118 (354)
T 2j8z_A           40 KEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLP-GGGQA  118 (354)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEECS-SCCSB
T ss_pred             eecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCCcCCCCCCCCEEEEecC-CCcce
Confidence            56788999999999999999999999999999776554679999999999999999999 99999999999764 59999


Q ss_pred             ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311           81 SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      ||++++++.++++|+++++++||+++.+++|||+++.+.+++++|++|||+|++|++|++++|+++..|++++++.+   
T Consensus       119 ey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---  195 (354)
T 2j8z_A          119 QYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---  195 (354)
T ss_dssp             SEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---
T ss_pred             eEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---
Confidence            99999999999999999999999999999999999987799999999999998899999999999999999888774   


Q ss_pred             CcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccc-
Q 021311          161 GSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVST-  238 (314)
Q Consensus       161 ~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-  238 (314)
                       ++++++.++++|++.++|+.+.. .+.+.+.+.+.+ +|++|||+|++.+..++++|+++|+++.+|...+....++. 
T Consensus       196 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  273 (354)
T 2j8z_A          196 -SQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAG-VNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLF  273 (354)
T ss_dssp             -CHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC-EEEEEESSCGGGHHHHHHHEEEEEEEEECCCTTCSCCCSCHH
T ss_pred             -CHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCC-ceEEEECCCchHHHHHHHhccCCCEEEEEeccCCCccCCChh
Confidence             67888888999999999987653 466777777655 99999999999889999999999999999976554445555 


Q ss_pred             ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcC---Cccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          239 SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG---KLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..++.+++++.|+++........+....+.++++++++++|   ++++.+ ++|+++++++||+.+.+++..| |+|+++
T Consensus       274 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvv~~  352 (354)
T 2j8z_A          274 SKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIG-KIVLEL  352 (354)
T ss_dssp             HHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSS-EEEEEC
T ss_pred             HHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCc-eEEEec
Confidence            66778999999986643211001112233456789999999   887764 6899999999999999887777 999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.4e-53  Score=368.73  Aligned_cols=303  Identities=22%  Similarity=0.292  Sum_probs=253.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|++|++|++||+|+++.. .|+|+|
T Consensus        21 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~-~G~~ae   99 (349)
T 4a27_A           21 FRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVN-YNAWAE   99 (349)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCSCCTTCEEEEECS-SCCSBS
T ss_pred             EecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCCCCCCCEEEEecC-CCcceE
Confidence            5788999999999999999999999999999987766678999999999999999999999999999999875 599999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRA  160 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~  160 (314)
                      |++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+|+.+| ++++++.    
T Consensus       100 y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~----  175 (349)
T 4a27_A          100 VVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA----  175 (349)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE----
T ss_pred             EEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC----
Confidence            99999999999999999999999999999999999888999999999999999999999999999996 5666665    


Q ss_pred             CcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC-------
Q 021311          161 GSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP-------  233 (314)
Q Consensus       161 ~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-------  233 (314)
                       ++++++.++ +|++++++...+..+.+++.+++  ++|++|||+|++.+..++++++++|+++.+|......       
T Consensus       176 -~~~~~~~~~-~ga~~~~~~~~~~~~~~~~~~~~--g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~  251 (349)
T 4a27_A          176 -STFKHEAIK-DSVTHLFDRNADYVQEVKRISAE--GVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFF  251 (349)
T ss_dssp             -CGGGHHHHG-GGSSEEEETTSCHHHHHHHHCTT--CEEEEEEECC-------CTTEEEEEEEEEEC-------------
T ss_pred             -CHHHHHHHH-cCCcEEEcCCccHHHHHHHhcCC--CceEEEECCCchhHHHHHHHhhcCCEEEEECCCccccccccccc
Confidence             456677777 99999999444455778887654  5999999999988899999999999999999643110       


Q ss_pred             ---------cccccccceecceEEEEEechhhccc-cCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhc
Q 021311          234 ---------ITVSTSAFIFKDLSLKGFWLQKWLSS-EKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALG  302 (314)
Q Consensus       234 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~  302 (314)
                               ..+++..++.+++++.++++..+... ......++.++++++++++|++++.+ +.|+++++++||+.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~  331 (349)
T 4a27_A          252 SFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHD  331 (349)
T ss_dssp             ------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHT
T ss_pred             ccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHh
Confidence                     12444557778999999987554322 23355678899999999999999875 57999999999999999


Q ss_pred             cCCCCCceEeeC
Q 021311          303 LHGSQPKQVIKF  314 (314)
Q Consensus       303 ~~~~~~k~vi~~  314 (314)
                      ++..| |+||++
T Consensus       332 ~~~~G-Kvvi~~  342 (349)
T 4a27_A          332 RGNIG-KLILDV  342 (349)
T ss_dssp             TCCSS-EEEEET
T ss_pred             CCCCc-eEEEec
Confidence            98888 999975

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=2.1e-52  Score=365.00  Aligned_cols=300  Identities=20%  Similarity=0.223  Sum_probs=261.1

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--CCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--SSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~~g~~   79 (314)
                      +++|.|+|+++||+|||.+++||++|++.+.|.   ...+|.++|||++|+|+++|++|++|++||+|++...  ..|+|
T Consensus        23 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~G~~   99 (346)
T 3fbg_A           23 FNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD---VSKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNGSN   99 (346)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC---CSSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSS
T ss_pred             ccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC---CCCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcCCCCCCcce
Confidence            578999999999999999999999999998886   2367999999999999999999999999999998742  36999


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCC------CCCEEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLN------SGDSIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~~~~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                      +||++++++.++++|+++++++||+++++++|||+++.+.++++      +|++|||+|++|++|++++|+|+..|++++
T Consensus       100 aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi  179 (346)
T 3fbg_A          100 AEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVI  179 (346)
T ss_dssp             BSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             eEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999999999998889998      999999998889999999999999999888


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ++.+    ++++++.++++|++++++++++..+.+++. .+.+ +|++|||+|++.. ..++++|+++|+++.++.   .
T Consensus       180 ~~~~----~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~~~g-~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~---~  250 (346)
T 3fbg_A          180 TTAS----RNETIEWTKKMGADIVLNHKESLLNQFKTQ-GIEL-VDYVFCTFNTDMYYDDMIQLVKPRGHIATIVA---F  250 (346)
T ss_dssp             EECC----SHHHHHHHHHHTCSEEECTTSCHHHHHHHH-TCCC-EEEEEESSCHHHHHHHHHHHEEEEEEEEESSC---C
T ss_pred             EEeC----CHHHHHHHHhcCCcEEEECCccHHHHHHHh-CCCC-ccEEEECCCchHHHHHHHHHhccCCEEEEECC---C
Confidence            8873    688999999999999999987666778777 4444 9999999998764 899999999999998874   2


Q ss_pred             CcccccccceecceEEEEEechhh--ccccCHHHHHHHHHHHHHHHHcCCccccc-eee---ccccHHHHHHHHhccCCC
Q 021311          233 PITVSTSAFIFKDLSLKGFWLQKW--LSSEKATECRNMIDYLLCLAREGKLKYDM-ELV---PFNNFQTALSKALGLHGS  306 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~---~~~~~~~a~~~~~~~~~~  306 (314)
                      ...++...++.+++++.++++...  +...+.....+.++++++++++|++++.+ +.|   +++++++||+.+.+++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~  330 (346)
T 3fbg_A          251 ENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMI  330 (346)
T ss_dssp             SSCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred             CCCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcc
Confidence            334556667778999998765432  11124555678899999999999999875 456   999999999999999999


Q ss_pred             CCceEeeC
Q 021311          307 QPKQVIKF  314 (314)
Q Consensus       307 ~~k~vi~~  314 (314)
                      | |+|+++
T Consensus       331 G-Kvvl~~  337 (346)
T 3fbg_A          331 G-KLVINL  337 (346)
T ss_dssp             S-EEEEEC
T ss_pred             e-EEEEec
Confidence            8 999975

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.6e-52  Score=364.11  Aligned_cols=304  Identities=19%  Similarity=0.249  Sum_probs=259.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCC-CCC-CCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVY-PVR-PKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~-~~~-~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~   79 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.+ +.. +.+|.++|||++|+|+++|++|++|++||+|+......|+|
T Consensus        19 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~   98 (333)
T 1wly_A           19 EEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAY   98 (333)
T ss_dssp             EECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCSCCTTCEEEECSSSCCCS
T ss_pred             EeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCCCCCCCEEEEecCCCCcc
Confidence            5788999999999999999999999999998865 211 35799999999999999999999999999998765324899


Q ss_pred             cceEeeeccceEEcCCCCCHHH--hhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEY--AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +||++++++.++++|+++++++  ||+++.+++|||+++.+.+++++|++|||+|++|++|++++|+++..|++++++.+
T Consensus        99 aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~  178 (333)
T 1wly_A           99 SQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS  178 (333)
T ss_dssp             BSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES
T ss_pred             eeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            9999999999999999999999  99999999999999987789999999999999999999999999999999888874


Q ss_pred             CCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccc
Q 021311          158 DRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV  236 (314)
Q Consensus       158 ~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  236 (314)
                          ++++.+.++++|+++++|+.+.. .+.+.+.+.+.+ +|++|||+|+..+..++++++++|+++.+|...+....+
T Consensus       179 ----~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~-~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~  253 (333)
T 1wly_A          179 ----TEEKAETARKLGCHHTINYSTQDFAEVVREITGGKG-VDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGVADPI  253 (333)
T ss_dssp             ----SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCC-EEEEEECSCTTTHHHHHHTEEEEEEEEECCCTTCCCCCC
T ss_pred             ----CHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCC-CeEEEECCcHHHHHHHHHhhccCCEEEEEecCCCCcCCC
Confidence                67788888899999999887643 466777776655 999999999988899999999999999999765443445


Q ss_pred             ccc-cceecc--eEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEe
Q 021311          237 STS-AFIFKD--LSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       237 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      +.. .++.++  +++.|++...+   ..+....+.++++++++.+|++++.+ +.|+++++++||+.+.+++..| |+|+
T Consensus       254 ~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvi  329 (333)
T 1wly_A          254 RVVEDLGVRGSLFITRPALWHYM---SNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIG-SIVL  329 (333)
T ss_dssp             CHHHHTTTTTSCEEECCCGGGGS---CSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCS-EEEE
T ss_pred             ChhHhhhhcCCcEEEEEeehhhc---cCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCCCce-EEEE
Confidence            555 667788  99988755222   24566678899999999999998875 6899999999999999988777 9998


Q ss_pred             eC
Q 021311          313 KF  314 (314)
Q Consensus       313 ~~  314 (314)
                      ++
T Consensus       330 ~~  331 (333)
T 1wly_A          330 LP  331 (333)
T ss_dssp             ET
T ss_pred             Ee
Confidence            75

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1e-53  Score=373.88  Aligned_cols=300  Identities=24%  Similarity=0.380  Sum_probs=258.3

Q ss_pred             CCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCC-CCCCCCCEEeeCC--CCCCcccc
Q 021311            5 PPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV-TRLAPGDWVIPSP--PSSGTWQS   81 (314)
Q Consensus         5 ~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v-~~~~~Gd~V~~~~--~~~g~~~~   81 (314)
                      |.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++| ++|++||+|++..  ...|+|+|
T Consensus        43 ~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~ae  122 (349)
T 3pi7_A           43 AVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAE  122 (349)
T ss_dssp             ECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBS
T ss_pred             CCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccceEEEEEEEECCCccCCCCCCCEEEEeccCCCCcccee
Confidence            89999999999999999999999999999876655789999999999999999999 9999999999875  23699999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCC-CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      |++++++.++++|+++++++||++++.++|||+++.+ ++ +++ +++||+|++|++|++++|+|+..|++++++.+   
T Consensus       123 y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~-~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---  197 (349)
T 3pi7_A          123 YAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDI-VK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---  197 (349)
T ss_dssp             EEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHH-HH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---
T ss_pred             eEeechHHeEECCCCCCHHHHhhccccHHHHHHHHHH-Hh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---
Confidence            9999999999999999999999999999999966654 66 666 79999999999999999999999999888874   


Q ss_pred             CcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccc-
Q 021311          161 GSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVST-  238 (314)
Q Consensus       161 ~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-  238 (314)
                       ++++++.++++|+++++|+++.. .+.+++.+++.+ +|++|||+|++.+..++++++++|+++.+|........++. 
T Consensus       198 -~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g-~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  275 (349)
T 3pi7_A          198 -RDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQ-PRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREP  275 (349)
T ss_dssp             -CGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHC-CCEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCSCCCCSCT
T ss_pred             -CHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCC-CcEEEECCCChhHHHHHhhhcCCCEEEEEeccCCCCCCCCch
Confidence             67788999999999999987654 467888887665 99999999998889999999999999999976666566666 


Q ss_pred             ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          239 SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..++.+++++.+++...+... .+....+.++++++++++|++++.+ +.|+++++++||+.+ +++..| |+||++
T Consensus       276 ~~~~~~~~~i~g~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~-~~~~~g-Kvvl~p  349 (349)
T 3pi7_A          276 GQLIFQHKHIEGFWLSEWMRQ-FKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAE-LTKPNG-KVFIRP  349 (349)
T ss_dssp             HHHHHSCCEEEECCHHHHHHH-THHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHHH-HTSSSS-CEEEEC
T ss_pred             hhhhccccEEEEEEehhhhhh-CcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHHHHHHHH-hCCCCc-eEEEeC
Confidence            677889999999987765432 3455678899999999999998875 689999999999954 445566 999975

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-52  Score=366.80  Aligned_cols=293  Identities=21%  Similarity=0.269  Sum_probs=254.6

Q ss_pred             CccCCCCC-CCCCcEEEEEEeecCChhhhhhhccCCC--CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC---
Q 021311            1 MIELPPVE-VKENDVCVKMLAAPINPSDINRIEGVYP--VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP---   74 (314)
Q Consensus         1 i~~~~~p~-~~~~eV~v~v~~~~i~~~D~~~~~~~~~--~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~---   74 (314)
                      ++++|.|+ |+++||+|||.++|||++|++.+.|.++  ....+|.++|||++|+|+++|++|++|++||+|+++..   
T Consensus        30 ~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~C  109 (359)
T 1h2b_A           30 IEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTD  109 (359)
T ss_dssp             EECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCC
T ss_pred             EEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCCCCCCCCCEEEeCCCCCC
Confidence            36789999 9999999999999999999999998764  12367999999999999999999999999999987642   


Q ss_pred             -----------------------CCCcccceEeeeccceEEcCCCCCHHHhh---cccccHHHHHHHHHHh-hcCCCCCE
Q 021311           75 -----------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAA---TIIVNPLTALRMLEDF-TTLNSGDS  127 (314)
Q Consensus        75 -----------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa---~~~~~~~ta~~~l~~~-~~~~~~~~  127 (314)
                                             ..|+|+||++++++.++++|+++++++||   .+++++.|||+++.+. +++++|++
T Consensus       110 g~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~  189 (359)
T 1h2b_A          110 GTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAY  189 (359)
T ss_dssp             SCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCE
Confidence                                   25999999999999999999999999999   7888899999999876 89999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          128 IVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      |||+|+ |++|++++|+|+.+ |++++++..    ++++++.++++|+++++|+++...+.+++++++.+ +|++|||+|
T Consensus       190 VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~----~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g-~Dvvid~~G  263 (359)
T 1h2b_A          190 VAIVGV-GGLGHIAVQLLKVMTPATVIALDV----KEEKLKLAERLGADHVVDARRDPVKQVMELTRGRG-VNVAMDFVG  263 (359)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHCCCEEEEEES----SHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCC-EEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEEeC----CHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCC-CcEEEECCC
Confidence            999999 99999999999999 999887773    78899999999999999987664466888887665 999999999


Q ss_pred             Cc---cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc
Q 021311          207 GN---SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY  283 (314)
Q Consensus       207 ~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~  283 (314)
                      ++   .+..++++  ++|+++.+|.....  .++...++.+++++.|++...          .+.++++++++++|++++
T Consensus       264 ~~~~~~~~~~~~~--~~G~~v~~g~~~~~--~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~  329 (359)
T 1h2b_A          264 SQATVDYTPYLLG--RMGRLIIVGYGGEL--RFPTIRVISSEVSFEGSLVGN----------YVELHELVTLALQGKVRV  329 (359)
T ss_dssp             CHHHHHHGGGGEE--EEEEEEECCCSSCC--CCCHHHHHHTTCEEEECCSCC----------HHHHHHHHHHHHTTSCCC
T ss_pred             CchHHHHHHHhhc--CCCEEEEEeCCCCC--CCCHHHHHhCCcEEEEecCCC----------HHHHHHHHHHHHcCCCcc
Confidence            97   56777777  99999999965433  555566778999999975432          256788999999999998


Q ss_pred             cceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          284 DMELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       284 ~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++.|+++++++||+.+.+++..| |+|+++
T Consensus       330 ~i~~~~l~~~~~A~~~~~~~~~~g-Kvvv~~  359 (359)
T 1h2b_A          330 EVDIHKLDEINDVLERLEKGEVLG-RAVLIP  359 (359)
T ss_dssp             CEEEEEGGGHHHHHHHHHTTCCSS-EEEEEC
T ss_pred             eEEEEeHHHHHHHHHHHHcCCCce-EEEeeC
Confidence            778899999999999999988777 999975

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=4.6e-52  Score=362.62  Aligned_cols=297  Identities=27%  Similarity=0.319  Sum_probs=257.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeC---------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPS---------   72 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~---------   72 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++....+|.++|||++|+|+++|++|++|++||+|+..         
T Consensus        18 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~c~   97 (343)
T 2eih_A           18 ADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCE   97 (343)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCCTTCEEEECCEECCSCSH
T ss_pred             EecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCcccch
Confidence            57889999999999999999999999999998765434679999999999999999999999999999932         


Q ss_pred             -----------------CCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCc
Q 021311           73 -----------------PPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATS  135 (314)
Q Consensus        73 -----------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g  135 (314)
                                       ....|+|+||++++++.++++|+++++++||+++.++.|||+++.+.+++++|++|||+|++|
T Consensus        98 ~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg  177 (343)
T 2eih_A           98 RCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGS  177 (343)
T ss_dssp             HHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTS
T ss_pred             hhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCc
Confidence                             112599999999999999999999999999999999999999998867999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHH
Q 021311          136 IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVL  214 (314)
Q Consensus       136 ~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~  214 (314)
                      ++|++++|+++..|++++++.+    ++++++.++++|+++++|+.+.. .+.+++.+++.+ +|++|||+|.+.+..++
T Consensus       178 ~iG~~~~~~a~~~G~~Vi~~~~----~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~-~d~vi~~~g~~~~~~~~  252 (343)
T 2eih_A          178 GVSVAAIQIAKLFGARVIATAG----SEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKG-ADKVVDHTGALYFEGVI  252 (343)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTC-EEEEEESSCSSSHHHHH
T ss_pred             hHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCC-ceEEEECCCHHHHHHHH
Confidence            9999999999999999888874    68888889999999999887644 356777776555 99999999977789999


Q ss_pred             HhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccH
Q 021311          215 KFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNF  293 (314)
Q Consensus       215 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~  293 (314)
                      ++|+++|+++.+|........++...++.+++++.|++...          .+.++++++++++|++++.+ +.|+|+++
T Consensus       253 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~l~~~g~l~~~i~~~~~l~~~  322 (343)
T 2eih_A          253 KATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMAS----------KSRLFPILRFVEEGKLKPVVGQVLPLEAA  322 (343)
T ss_dssp             HHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSCC----------GGGHHHHHHHHHHTSSCCCEEEEEEGGGH
T ss_pred             HhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCcc----------HHHHHHHHHHHHcCCCCCceeEEeeHHHH
Confidence            99999999999997654433456666778999999875321          25578899999999998875 68999999


Q ss_pred             HHHHHHHhccCCCCCceEeeC
Q 021311          294 QTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       294 ~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++||+.+.+++..+ |+|+++
T Consensus       323 ~~A~~~~~~~~~~g-Kvvv~~  342 (343)
T 2eih_A          323 AEGHRLLEERRVFG-KVVLQV  342 (343)
T ss_dssp             HHHHHHHHTTCSSS-EEEEEC
T ss_pred             HHHHHHHHcCCCce-EEEEec
Confidence            99999999887777 999875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2e-53  Score=368.65  Aligned_cols=299  Identities=16%  Similarity=0.180  Sum_probs=259.1

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-----CC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-----PS   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-----~~   75 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.|.++...++|.++|||++|+|+++|  +++|++||+|++..     ..
T Consensus        17 ~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~vGdrV~~~~~~~g~~~   94 (324)
T 3nx4_A           17 VQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFHAGQEVLLTGWGVGENH   94 (324)
T ss_dssp             EEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCCTTCEEEEECTTBTTTB
T ss_pred             EeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCCCCCEEEEcccccCCCC
Confidence            367899999999999999999999999999999877656789999999999999998  67899999999753     12


Q ss_pred             CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh--hcCCCCC-EEEEcCCCcHHHHHHHHHHHHcCCcE
Q 021311           76 SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF--TTLNSGD-SIVQNGATSIVGQCIIQIARHRGIHS  152 (314)
Q Consensus        76 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vlI~g~~g~~G~~a~~la~~~g~~v  152 (314)
                      .|+|+||+++++++++++|+++++++||+++..++|||+++...  .++++++ +|||+|++|++|++++|+|+.+|+++
T Consensus        95 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~V  174 (324)
T 3nx4_A           95 WGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQV  174 (324)
T ss_dssp             CCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCE
T ss_pred             CCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEE
Confidence            69999999999999999999999999999999999999988643  5566633 49999999999999999999999999


Q ss_pred             EEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC
Q 021311          153 INIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       153 i~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ++++.    ++++++.++++|+++++|+++...  +++++++  ++|++|||+|++.+..++++++++|+++.+|...+.
T Consensus       175 i~~~~----~~~~~~~~~~lGa~~vi~~~~~~~--~~~~~~~--~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~  246 (324)
T 3nx4_A          175 AAVSG----RESTHGYLKSLGANRILSRDEFAE--SRPLEKQ--LWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGF  246 (324)
T ss_dssp             EEEES----CGGGHHHHHHHTCSEEEEGGGSSC--CCSSCCC--CEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCS
T ss_pred             EEEeC----CHHHHHHHHhcCCCEEEecCCHHH--HHhhcCC--CccEEEECCCcHHHHHHHHHHhcCCEEEEEecCCCC
Confidence            98884    678899999999999999876542  4444443  599999999999889999999999999999976655


Q ss_pred             CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccHHHHHHHHhccCCCCCceEe
Q 021311          233 PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      ..+++...++.+++++.|++...+    .+....+.++.+++++++|++++.++.|+++++++||+.+.+++..| |+|+
T Consensus       247 ~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~g-kvvv  321 (324)
T 3nx4_A          247 ALPTTVMPFILRNVRLQGVDSVMT----PPARRAEAWARLVKDLPESFYAQAATEITLADAPKFADAIINNQVQG-RTLV  321 (324)
T ss_dssp             EEEEESHHHHHHCCEEEECCSTTC----CHHHHHHHHHHHHHHSCHHHHHHHEEEEEGGGHHHHHHHHHTTCCCS-EEEE
T ss_pred             CCCCCHHHHhhcCeEEEEEecccc----ChHHHHHHHHHHHHHHHcCCCCCCceeEeHHHHHHHHHHHHhCCCCc-eEEE
Confidence            556666777889999999865432    35566788999999999999987777899999999999999999888 9999


Q ss_pred             eC
Q 021311          313 KF  314 (314)
Q Consensus       313 ~~  314 (314)
                      ++
T Consensus       322 ~~  323 (324)
T 3nx4_A          322 KI  323 (324)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-51  Score=357.26  Aligned_cols=304  Identities=22%  Similarity=0.269  Sum_probs=260.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++. +.+|.++|||++|+|+++|++|++|++||+|.......|+|+|
T Consensus        19 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~g~~~G~~ae   97 (327)
T 1qor_A           19 VEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSS   97 (327)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEESCCSSCCSBS
T ss_pred             eccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCCCceeEEEEEEECCCCCCCCCCCEEEECCCCCceeee
Confidence            578899999999999999999999999999987643 3589999999999999999999999999999443122599999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||+++.+++|||+++.+.+++++|++|||+|++|++|++++|+++..|++++++.+    
T Consensus        98 y~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~----  173 (327)
T 1qor_A           98 VHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG----  173 (327)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES----
T ss_pred             EEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC----
Confidence            9999999999999999999999999999999999987789999999999999899999999999999999888874    


Q ss_pred             cHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSA  240 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  240 (314)
                      ++++.+.++++|+++++|+.+.. .+.+.+.+.+.+ +|++|||+|.+.+..++++|+++|+++.+|...+....++...
T Consensus       174 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~D~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~  252 (327)
T 1qor_A          174 TAQKAQSALKAGAWQVINYREEDLVERLKEITGGKK-VRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGI  252 (327)
T ss_dssp             SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCC-EEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHH
T ss_pred             CHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCC-ceEEEECCchHHHHHHHHHhcCCCEEEEEecCCCCCCccCHHH
Confidence            67888888899999999887643 466777776655 9999999997778999999999999999997654433455555


Q ss_pred             ceec-ceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc---eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          241 FIFK-DLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM---ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.+ ++++.++....+.  ..+....+.++++++++++|++++.+   +.|+++++++||+.+.+++..| |+|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~~~g-Kvvl~~  327 (327)
T 1qor_A          253 LNQKGSLYVTRPSLQGYI--TTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQG-SSLLIP  327 (327)
T ss_dssp             HHHTTSCEEECCCHHHHC--CSHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTCCCB-CCEEEC
T ss_pred             HhhccceEEEccchhhhc--CCHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHHHHHHHHHhCCCCc-eEEEeC
Confidence            6666 7887766544432  23455677899999999999999864   5899999999999999988777 999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=9.3e-52  Score=359.97  Aligned_cols=293  Identities=23%  Similarity=0.321  Sum_probs=255.1

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|++|++||+|++.+       
T Consensus        15 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~   94 (339)
T 1rjw_A           15 IKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGH   94 (339)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSC
T ss_pred             EEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCCCEEEEecCCCCCCC
Confidence            3578999999999999999999999999999987764446899999999999999999999999999998632       


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ...|+|+||++++++.++++|+++++++||+++.++.|||+++.+ .++++|++|||+|+
T Consensus        95 C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga  173 (339)
T 1rjw_A           95 CDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGI  173 (339)
T ss_dssp             SHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECC
T ss_pred             CchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECC
Confidence                                125899999999999999999999999999999999999999987 58999999999999


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCC-ccHH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGG-NSAS  211 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~-~~~~  211 (314)
                       |++|++++|+|+..|++++++.+    ++++++.++++|+++++|+.+.. .+.+++.+ +  ++|++|||+|. ..+.
T Consensus       174 -G~vG~~~~~~a~~~Ga~Vi~~~~----~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~-~--~~d~vid~~g~~~~~~  245 (339)
T 1rjw_A          174 -GGLGHVAVQYAKAMGLNVVAVDI----GDEKLELAKELGADLVVNPLKEDAAKFMKEKV-G--GVHAAVVTAVSKPAFQ  245 (339)
T ss_dssp             -STTHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH-S--SEEEEEESSCCHHHHH
T ss_pred             -CHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHCCCCEEecCCCccHHHHHHHHh-C--CCCEEEECCCCHHHHH
Confidence             88999999999999998887773    78888999999999999987543 45677776 3  49999999998 5668


Q ss_pred             HHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccc
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFN  291 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  291 (314)
                      .++++|+++|+++.+|...+ +..++...++.+++++.|++...          .+.++++++++.+|++++.++.|+++
T Consensus       246 ~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~~~~~~l~  314 (339)
T 1rjw_A          246 SAYNSIRRGGACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVGT----------RKDLQEALQFAAEGKVKTIIEVQPLE  314 (339)
T ss_dssp             HHHHHEEEEEEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSCC----------HHHHHHHHHHHHTTSCCCCEEEEEGG
T ss_pred             HHHHHhhcCCEEEEecccCC-CCccCHHHHHhCCcEEEEeccCC----------HHHHHHHHHHHHcCCCCccEEEEcHH
Confidence            99999999999999996543 34555566777999999875432          24578899999999999988899999


Q ss_pred             cHHHHHHHHhccCCCCCceEeeC
Q 021311          292 NFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       292 ~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++||+.+.+++..| |+|+++
T Consensus       315 ~~~~A~~~~~~~~~~g-Kvvi~~  336 (339)
T 1rjw_A          315 KINEVFDRMLKGQING-RVVLTL  336 (339)
T ss_dssp             GHHHHHHHHHTTCCSS-EEEEEC
T ss_pred             HHHHHHHHHHcCCCce-EEEEec
Confidence            9999999999988777 999875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=8e-52  Score=363.19  Aligned_cols=301  Identities=24%  Similarity=0.287  Sum_probs=259.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--CCCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--PSSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--~~~g~~   79 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|++..  ...|+|
T Consensus        43 ~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~  121 (363)
T 4dvj_A           43 IELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTN  121 (363)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC---CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCCSC
T ss_pred             eecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCccc
Confidence            477889999999999999999999999999998764 36899999999999999999999999999999864  236999


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCC-----CCCEEEEcCCCcHHHHHHHHHHHH-cCCcEE
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLN-----SGDSIVQNGATSIVGQCIIQIARH-RGIHSI  153 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~~~~vlI~g~~g~~G~~a~~la~~-~g~~vi  153 (314)
                      +||++++++.++++|+++++++||+++++++|||+++.+.++++     +|++|||+|++|++|++++|+|+. .|++++
T Consensus       122 aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi  201 (363)
T 4dvj_A          122 AEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVI  201 (363)
T ss_dssp             BSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEE
T ss_pred             eEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEE
Confidence            99999999999999999999999999999999999998888998     899999999889999999999998 588888


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ++..    ++++++.++++|++++++++++..+.++++ .+. ++|++|||+|++ .+..++++++++|+++.+|.    
T Consensus       202 ~~~~----~~~~~~~~~~lGad~vi~~~~~~~~~v~~~-~~~-g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~----  271 (363)
T 4dvj_A          202 ATAS----RPETQEWVKSLGAHHVIDHSKPLAAEVAAL-GLG-APAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD----  271 (363)
T ss_dssp             EECS----SHHHHHHHHHTTCSEEECTTSCHHHHHHTT-CSC-CEEEEEECSCHHHHHHHHHHHSCTTCEEEECSC----
T ss_pred             EEeC----CHHHHHHHHHcCCCEEEeCCCCHHHHHHHh-cCC-CceEEEECCCchhhHHHHHHHhcCCCEEEEECC----
Confidence            8873    688999999999999999987666777776 444 499999999986 56899999999999999963    


Q ss_pred             CcccccccceecceEEEEEechhh--ccccCHHHHHHHHHHHHHHHHcCCccccce-ee---ccccHHHHHHHHhccCCC
Q 021311          233 PITVSTSAFIFKDLSLKGFWLQKW--LSSEKATECRNMIDYLLCLAREGKLKYDME-LV---PFNNFQTALSKALGLHGS  306 (314)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~---~~~~~~~a~~~~~~~~~~  306 (314)
                      +..++...++.+++++.++.+...  +...+.....+.++.+++++++|++++.+. .+   +++++++||+.+.+++..
T Consensus       272 ~~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~  351 (363)
T 4dvj_A          272 PSAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTAR  351 (363)
T ss_dssp             CSSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCC
T ss_pred             CCccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCc
Confidence            234566677789999998765332  122233445678999999999999998753 34   999999999999999988


Q ss_pred             CCceEeeC
Q 021311          307 QPKQVIKF  314 (314)
Q Consensus       307 ~~k~vi~~  314 (314)
                      | |+||++
T Consensus       352 G-KvVl~~  358 (363)
T 4dvj_A          352 G-KVVIEG  358 (363)
T ss_dssp             S-EEEEEC
T ss_pred             e-EEEEeC
Confidence            8 999975

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=2.8e-52  Score=364.63  Aligned_cols=286  Identities=19%  Similarity=0.228  Sum_probs=248.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|++.+.      
T Consensus        19 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~   97 (348)
T 3two_A           19 PHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKA   97 (348)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSC
T ss_pred             EEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCCCCCCEEEEeCCcCCCCC
Confidence            3578899999999999999999999999999998764 368999999999999999999999999999986421      


Q ss_pred             ------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCC
Q 021311           75 ------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNS  124 (314)
Q Consensus        75 ------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  124 (314)
                                                    ..|+|+||++++++.++++|+++++++||.+++++.|||+++.+ .++++
T Consensus        98 C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~  176 (348)
T 3two_A           98 CKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKF-SKVTK  176 (348)
T ss_dssp             SHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCCT
T ss_pred             ChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCC
Confidence                                          02999999999999999999999999999999999999999977 69999


Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      |++|||+|+ |++|++++|+|+.+|++++++..    ++++++.++++|+++++ .+...   +.+      ++|++|||
T Consensus       177 g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~----~~~~~~~~~~lGa~~v~-~~~~~---~~~------~~D~vid~  241 (348)
T 3two_A          177 GTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFAR----NEHKKQDALSMGVKHFY-TDPKQ---CKE------ELDFIIST  241 (348)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHHTTCEEEEECS----SSTTHHHHHHTTCSEEE-SSGGG---CCS------CEEEEEEC
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeC----CHHHHHHHHhcCCCeec-CCHHH---Hhc------CCCEEEEC
Confidence            999999998 99999999999999999888774    67788899999999998 33322   211      39999999


Q ss_pred             CCCc-cHHHHHHhcccCCEEEEEcCCCCCCcc-cccccce-ecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCc
Q 021311          205 VGGN-SASKVLKFLSQGGTMVTYGGMSKKPIT-VSTSAFI-FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL  281 (314)
Q Consensus       205 ~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  281 (314)
                      +|++ .+..++++|+++|+++.+|.....+.. ++...++ .+++++.|++....          +.++++++++++|++
T Consensus       242 ~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~~~l~~~g~l  311 (348)
T 3two_A          242 IPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGI----------KETQEMVDFSIKHNI  311 (348)
T ss_dssp             CCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCCH----------HHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCCH----------HHHHHHHHHHHhCCC
Confidence            9998 779999999999999999965523333 5555666 89999999876432          457889999999999


Q ss_pred             cccceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          282 KYDMELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       282 ~~~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.++.|+++++++||+.+.+++..| |+||++
T Consensus       312 ~~~~~~~~l~~~~~A~~~~~~~~~~g-KvVi~~  343 (348)
T 3two_A          312 YPEIDLILGKDIDTAYHNLTHGKAKF-RYVIDM  343 (348)
T ss_dssp             CCCEEEECGGGHHHHHHHHHTTCCCS-EEEEEG
T ss_pred             CceEEEEEHHHHHHHHHHHHcCCCce-EEEEec
Confidence            99889999999999999999998888 999974

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.1e-51  Score=360.98  Aligned_cols=299  Identities=22%  Similarity=0.211  Sum_probs=251.9

Q ss_pred             CccCCCCC-CCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            1 MIELPPVE-VKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         1 i~~~~~p~-~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      ++|+|.|+ ++|+||||||.|+|||++|++.+.+..+.  .+|.++|||++|+|+++|++|+++++||+|.+...     
T Consensus        14 v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~--~~P~i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~~~~~g~   91 (346)
T 4a2c_A           14 VAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH--YYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFT   91 (346)
T ss_dssp             EEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS--SSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSC
T ss_pred             EEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC--CCCccccEEEEEEEEEECCCcccccCCCeEEeeeccCCCC
Confidence            47899998 57999999999999999999999887654  68999999999999999999999999999987531     


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                           .+|+|+||+++++++++++|+++++++||+++  .++++..+.+..++++|++|||+|+
T Consensus        92 c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~--~~~~~~~~~~~~~~~~g~~VlV~Ga  169 (346)
T 4a2c_A           92 CPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE--PITVGLHAFHLAQGCENKNVIIIGA  169 (346)
T ss_dssp             SHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH--HHHHHHHHHHHTTCCTTSEEEEECC
T ss_pred             cccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch--HHHHHHHHHHHhccCCCCEEEEECC
Confidence                                 26999999999999999999999999999876  4454444556699999999999998


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCcc-HH
Q 021311          134 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGNS-AS  211 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~~-~~  211 (314)
                       |++|++++|+|+.+|++++++++.   ++++++.++++|+++++|+++.+. +.++.++++.+ +|+++||+|.+. ++
T Consensus       170 -G~vG~~aiq~ak~~G~~~vi~~~~---~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g-~d~v~d~~G~~~~~~  244 (346)
T 4a2c_A          170 -GTIGLLAIQCAVALGAKSVTAIDI---SSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRF-NQLILETAGVPQTVE  244 (346)
T ss_dssp             -SHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCS-SEEEEECSCSHHHHH
T ss_pred             -CCcchHHHHHHHHcCCcEEEEEec---hHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCC-cccccccccccchhh
Confidence             999999999999999998777764   788999999999999999987655 45666777766 999999999865 58


Q ss_pred             HHHHhcccCCEEEEEcCCCCCC--cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ce
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKP--ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---ME  286 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~  286 (314)
                      .++++++++|+++.+|......  ...+...++.+++++.|+++.....     ...+.++++++++++|++++.   ++
T Consensus       245 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~-----~~~~~~~~~~~l~~~g~l~~~~lI~~  319 (346)
T 4a2c_A          245 LAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSP-----WPGQEWETASRLLTERKLSLEPLIAH  319 (346)
T ss_dssp             HHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSS-----TTCHHHHHHHHHHHTTCSCCGGGEEE
T ss_pred             hhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCc-----chHHHHHHHHHHHHcCCCCCCccEeE
Confidence            9999999999999999765442  2334456778999999986543211     112557889999999998753   46


Q ss_pred             eeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          287 LVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       287 ~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +|+|+++++||+.+.+++..| |+||++
T Consensus       320 ~~~l~~~~~A~~~l~~~~~~G-KvVl~P  346 (346)
T 4a2c_A          320 RGSFESFAQAVRDIARNAMPG-KVLLIP  346 (346)
T ss_dssp             EECHHHHHHHHHHHTTSCCCS-EEEECC
T ss_pred             EEeHHHHHHHHHHHHcCCCce-EEEEEC
Confidence            899999999999999999888 999975

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-51  Score=360.27  Aligned_cols=295  Identities=19%  Similarity=0.259  Sum_probs=256.2

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|++|++||+|++.+        
T Consensus        21 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~cg~C  100 (347)
T 2hcy_A           21 KDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMAC  100 (347)
T ss_dssp             EEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSEEECCSSS
T ss_pred             EEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCCCcCCCEEEEecCCCCCCCC
Confidence            578899999999999999999999999999987664446899999999999999999999999999998632        


Q ss_pred             -------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           74 -------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        74 -------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                                         ...|+|+||++++++.++++|+++++++||+++.++.|||+++.+ .++++|++|||+|++
T Consensus       101 ~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Ga~  179 (347)
T 2hcy_A          101 EYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKS-ANLMAGHWVAISGAA  179 (347)
T ss_dssp             TTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHHT-TTCCTTCEEEEETTT
T ss_pred             hhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHHh-cCCCCCCEEEEECCC
Confidence                               125899999999999999999999999999999999999999977 589999999999999


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-h-hHHHHHHHhcCCCCCcEEEecCCC-ccHH
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-L-EVKNVKGLLANLPEPALGFNCVGG-NSAS  211 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~-~~~~i~~~~~~~g~~d~v~d~~g~-~~~~  211 (314)
                      |++|++++|+++..|++++++.+    ++++.+.++++|+++++|+.+ . ..+.+++.+.+ + +|++||++|. ..+.
T Consensus       180 ggiG~~~~~~a~~~Ga~V~~~~~----~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~-~-~D~vi~~~g~~~~~~  253 (347)
T 2hcy_A          180 GGLGSLAVQYAKAMGYRVLGIDG----GEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDG-G-AHGVINVSVSEAAIE  253 (347)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEC----STTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTS-C-EEEEEECSSCHHHHH
T ss_pred             chHHHHHHHHHHHCCCcEEEEcC----CHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCC-C-CCEEEECCCcHHHHH
Confidence            99999999999999999888774    566778888999999998762 3 34567777766 4 9999999998 5668


Q ss_pred             HHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccc
Q 021311          212 KVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFN  291 (314)
Q Consensus       212 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  291 (314)
                      .++++|+++|+++.+|...+...+++...++.+++++.|++...          .+.++++++++++|++++.+++|+++
T Consensus       254 ~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~~~~~~l~  323 (347)
T 2hcy_A          254 ASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGN----------RADTREALDFFARGLVKSPIKVVGLS  323 (347)
T ss_dssp             HHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCC----------HHHHHHHHHHHHTTSCCCCEEEEEGG
T ss_pred             HHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCC----------HHHHHHHHHHHHhCCCccceEEEcHH
Confidence            99999999999999997654445566666778999999875432          24578899999999999988899999


Q ss_pred             cHHHHHHHHhccCCCCCceEeeC
Q 021311          292 NFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       292 ~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++||+.+.+++..| |+|+++
T Consensus       324 ~~~~A~~~~~~~~~~g-Kvvv~~  345 (347)
T 2hcy_A          324 TLPEIYEKMEKGQIVG-RYVVDT  345 (347)
T ss_dssp             GHHHHHHHHHTTCCSS-EEEEES
T ss_pred             HHHHHHHHHHcCCcce-eEEEec
Confidence            9999999999887777 999875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-51  Score=362.66  Aligned_cols=296  Identities=20%  Similarity=0.272  Sum_probs=253.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|++.+..     
T Consensus        23 ~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C  101 (378)
T 3uko_A           23 IEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECREC  101 (378)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSS
T ss_pred             EEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCC-CCCCccCCccceEEEEEeCCCCCcCCCCCEEEEecCCCCCCC
Confidence            3578899999999999999999999999999998653 3689999999999999999999999999999876431     


Q ss_pred             -------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHH
Q 021311           76 -------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA  112 (314)
Q Consensus        76 -------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  112 (314)
                                                                 .|+|+||++++++.++++|+++++++||++++++.||
T Consensus       102 ~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  181 (378)
T 3uko_A          102 KFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTG  181 (378)
T ss_dssp             HHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHH
T ss_pred             hhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEECCCCCCHHHhhhhhhhHHHH
Confidence                                                       1699999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHHHH
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVKNV  188 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~i  188 (314)
                      |+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.    .++++++.++++|+++++|+.+   ...+.+
T Consensus       182 ~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~----~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i  256 (378)
T 3uko_A          182 LGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGID----IDSKKYETAKKFGVNEFVNPKDHDKPIQEVI  256 (378)
T ss_dssp             HHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEEC----SCTTHHHHHHTTTCCEEECGGGCSSCHHHHH
T ss_pred             HHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc----CCHHHHHHHHHcCCcEEEccccCchhHHHHH
Confidence            999988899999999999998 9999999999999999 566665    3678899999999999999873   345778


Q ss_pred             HHHhcCCCCCcEEEecCCCc-cHHHHHHhcccC-CEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHH
Q 021311          189 KGLLANLPEPALGFNCVGGN-SASKVLKFLSQG-GTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATEC  265 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (314)
                      ++++++ + +|++|||+|.+ .+..++++++++ |+++.+|.... ...++++..++ +++++.|++++.+.       .
T Consensus       257 ~~~~~g-g-~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~-------~  326 (378)
T 3uko_A          257 VDLTDG-G-VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK-------S  326 (378)
T ss_dssp             HHHTTS-C-BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGGCC-------H
T ss_pred             HHhcCC-C-CCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh-cCcEEEEEEecCCC-------c
Confidence            888888 5 99999999995 568999999996 99999996543 33455555554 48899988765431       2


Q ss_pred             HHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          266 RNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       266 ~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .+.++++++++.+|++++.   +++|+|+++++||+.+.+++. . |+||++
T Consensus       327 ~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~-~-Kvvi~~  376 (378)
T 3uko_A          327 RTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTC-L-RCVLDT  376 (378)
T ss_dssp             HHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTC-S-EEEEET
T ss_pred             hHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCc-e-EEEEec
Confidence            3568889999999999863   468999999999999988764 3 999975

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=8e-51  Score=359.09  Aligned_cols=293  Identities=22%  Similarity=0.317  Sum_probs=250.1

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|. +. ..+|.++|||++|+|+++|++|++|++||+|++.+.       
T Consensus        24 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~-~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~  101 (376)
T 1e3i_A           24 EEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KK-ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCK  101 (376)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SC-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSH
T ss_pred             EEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CC-CCCCcccCccccEEEEEECCCCccCCCCCEEEECCcCCCCCCc
Confidence            577889999999999999999999999999886 32 367999999999999999999999999999987531       


Q ss_pred             --------------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHH
Q 021311           75 --------------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPL  110 (314)
Q Consensus        75 --------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  110 (314)
                                                                  ..|+|+||++++++.++++|+++++++||++++++.
T Consensus       102 ~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~  181 (376)
T 1e3i_A          102 LCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFS  181 (376)
T ss_dssp             HHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHH
T ss_pred             cccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccEEECCCCCCHHHhhhhccHHH
Confidence                                                        138999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHH
Q 021311          111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVK  186 (314)
Q Consensus       111 ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~  186 (314)
                      |||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++..    ++++++.++++|+++++|+++   +..+
T Consensus       182 ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~----~~~~~~~a~~lGa~~vi~~~~~~~~~~~  256 (376)
T 1e3i_A          182 SGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDI----NGEKFPKAKALGATDCLNPRELDKPVQD  256 (376)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS----CGGGHHHHHHTTCSEEECGGGCSSCHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC----CHHHHHHHHHhCCcEEEccccccchHHH
Confidence            99999988899999999999997 9999999999999999 5666552    678889999999999999874   3456


Q ss_pred             HHHHHhcCCCCCcEEEecCCC-ccHHHHHHhcccC-CEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHH
Q 021311          187 NVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQG-GTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATE  264 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (314)
                      .+++.+++ + +|++|||+|. +.+..++++++++ |+++.+|. ...+.++++..++.++ ++.|+++..+.       
T Consensus       257 ~v~~~~~~-g-~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~-~~~~~~~~~~~~~~~~-~i~g~~~~~~~-------  325 (376)
T 1e3i_A          257 VITELTAG-G-VDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA-KVDEMTIPTVDVILGR-SINGTFFGGWK-------  325 (376)
T ss_dssp             HHHHHHTS-C-BSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC-SSSEEEEEHHHHHTTC-EEEECSGGGCC-------
T ss_pred             HHHHHhCC-C-ccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC-CCCccccCHHHhhccC-eEEEEecCCCC-------
Confidence            78888876 4 9999999998 4568999999999 99999996 3444555666666677 88887654321       


Q ss_pred             HHHHHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          265 CRNMIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       265 ~~~~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..+.++++++++++|++++.   ++.|+|+++++||+.+.+++ .+ |+||+|
T Consensus       326 ~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~-Kvvi~~  376 (376)
T 1e3i_A          326 SVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGK-SI-RTILTF  376 (376)
T ss_dssp             HHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTC-CS-EEEEEC
T ss_pred             cHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCC-cc-eEEEeC
Confidence            23568899999999999852   46899999999999998876 34 999986

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.4e-51  Score=360.10  Aligned_cols=295  Identities=22%  Similarity=0.278  Sum_probs=253.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++.  .+|.++|||++|+|+++|++|++|++||+|++.+        
T Consensus        22 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~Cg~C~~   99 (371)
T 1f8f_A           22 QALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQ   99 (371)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCCCCSSSHH
T ss_pred             EEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCCC--CCCcccCcccceEEEEeCCCCCCCCCCCEEEecCCCCCCChh
Confidence            578889999999999999999999999999987652  5799999999999999999999999999998631        


Q ss_pred             ----------------------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           74 ----------------------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        74 ----------------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                              ...|+|+||++++++.++++|+++++++||++++++.|||
T Consensus       100 C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~  179 (371)
T 1f8f_A          100 CNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA  179 (371)
T ss_dssp             HHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHH
T ss_pred             hhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCCCCCHHHHHHhcchHHHHH
Confidence                                                    0148999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGL  191 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~  191 (314)
                      +++.+.+++++|++|||+|+ |++|++++|+|+.+|++ ++++.    .++++++.++++|+++++++++.. .+.+++.
T Consensus       180 ~al~~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~----~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          180 GACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVD----IVESRLELAKQLGATHVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             HHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEE----SCHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEC----CCHHHHHHHHHcCCCEEecCCccCHHHHHHHh
Confidence            99987799999999999997 99999999999999995 66655    378899999999999999987654 4678888


Q ss_pred             hcCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHHHH
Q 021311          192 LANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMI  269 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (314)
                      +++ + +|++|||+|.+ .+..++++|+++|+++.+|.... .+.+++...++.+++++.+++...+.       .++.+
T Consensus       255 ~~g-g-~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-------~~~~~  325 (371)
T 1f8f_A          255 TDG-G-VNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGS-------PKKFI  325 (371)
T ss_dssp             TTS-C-EEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSC-------HHHHH
T ss_pred             cCC-C-CcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCc-------hHHHH
Confidence            877 5 99999999984 56899999999999999996543 23456666677899999998654321       13668


Q ss_pred             HHHHHHHHcCCcccc--ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          270 DYLLCLAREGKLKYD--MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       270 ~~~~~~l~~g~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++++|++++.  +..|+|+++++||+.+.+++. + |+||++
T Consensus       326 ~~~~~l~~~g~l~~~~~i~~~~l~~~~~A~~~~~~~~~-~-Kvvv~~  370 (371)
T 1f8f_A          326 PELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSRKGIT-L-KPIIKI  370 (371)
T ss_dssp             HHHHHHHHTTSCCGGGGEEEEEGGGHHHHHHHHHHTSC-S-EEEEEC
T ss_pred             HHHHHHHHcCCCCcccceeEecHHHHHHHHHHHHCCCc-e-EEEEee
Confidence            999999999999863  323999999999999988764 5 999975

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.4e-51  Score=372.12  Aligned_cols=297  Identities=17%  Similarity=0.166  Sum_probs=256.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccC-------------C---CCCCCCC-ccCCcceEEEEEEecCCCCCCC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGV-------------Y---PVRPKVP-AVGGYEGVGEVYSVGSAVTRLA   64 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~-------------~---~~~~~~p-~~~G~e~~G~V~~~G~~v~~~~   64 (314)
                      +++|.|+|+++||+|||.++|||++|++...+.             .   .....+| .++|||++|+|+++|++|++|+
T Consensus        61 ~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~  140 (456)
T 3krt_A           61 DDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQ  140 (456)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCC
T ss_pred             EEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhccccccccccCCCCcccccceeEEEEEEECCCCCCCC
Confidence            578999999999999999999999998764321             1   1112467 6899999999999999999999


Q ss_pred             CCCEEeeCCC--------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHH
Q 021311           65 PGDWVIPSPP--------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED  118 (314)
Q Consensus        65 ~Gd~V~~~~~--------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~  118 (314)
                      +||+|++...                          ..|+|+||+++++++++++|+++++++||+++.++.|||+++..
T Consensus       141 vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~  220 (456)
T 3krt_A          141 AGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVS  220 (456)
T ss_dssp             TTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHh
Confidence            9999998531                          14999999999999999999999999999999999999999975


Q ss_pred             h--hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh------------
Q 021311          119 F--TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE------------  184 (314)
Q Consensus       119 ~--~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~------------  184 (314)
                      .  +++++|++|||+|++|++|++++|+|+..|++++++++    ++++++.++++|+++++++.+.+            
T Consensus       221 ~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~----~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~  296 (456)
T 3krt_A          221 RNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS----SPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDP  296 (456)
T ss_dssp             TTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECH
T ss_pred             hcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC----CHHHHHHHHhhCCcEEEecCcCcccccccccccch
Confidence            4  78999999999999999999999999999999998883    78899999999999999987632            


Q ss_pred             ------HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhcc
Q 021311          185 ------VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLS  258 (314)
Q Consensus       185 ------~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (314)
                            .+.+++++++.+ +|++|||+|++.+..++++++++|+++.+|...+....++...++.+++++.|++...+  
T Consensus       297 ~~~~~~~~~i~~~t~g~g-~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~--  373 (456)
T 3krt_A          297 KEWKRFGKRIRELTGGED-IDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANY--  373 (456)
T ss_dssp             HHHHHHHHHHHHHHTSCC-EEEEEECSCHHHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCH--
T ss_pred             HHHHHHHHHHHHHhCCCC-CcEEEEcCCchhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEeccCCH--
Confidence                  267888888776 99999999998789999999999999999977665556666677788999999876443  


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          259 SEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                              +.+..+++++++|++++.+ ++|+|+++++||+.+.+++..| |+||.+
T Consensus       374 --------~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~G-Kvvv~~  421 (456)
T 3krt_A          374 --------REAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQG-KVGVLC  421 (456)
T ss_dssp             --------HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSS-EEEEES
T ss_pred             --------HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCC-cEEEEe
Confidence                    3345689999999999875 6899999999999999999888 998864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1e-50  Score=355.27  Aligned_cols=296  Identities=19%  Similarity=0.211  Sum_probs=250.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhh-hhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDIN-RIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~-~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~------   73 (314)
                      ++|+|.|+|+++||+|||.++|||++|++ .+.|.++.  ++|.++|||++|+|+++|++|++|++||+|++.+      
T Consensus        14 ~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~--~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~c~~   91 (352)
T 3fpc_A           14 WIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE--RHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWR   91 (352)
T ss_dssp             EEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC--CSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSBCCCSS
T ss_pred             EEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC--CCCcccCCcceEEEEEECCCCCcCCCCCEEEEccccCCCC
Confidence            35789999999999999999999999999 55777654  5799999999999999999999999999999632      


Q ss_pred             -----------------------CCCCcccceEeeecc--ceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEE
Q 021311           74 -----------------------PSSGTWQSYVVKDQS--VWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSI  128 (314)
Q Consensus        74 -----------------------~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~v  128 (314)
                                             ..+|+|+||++++++  .++++|+++++++||+++.++.|||+++ +.+++++|++|
T Consensus        92 c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~V  170 (352)
T 3fpc_A           92 TSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTV  170 (352)
T ss_dssp             SHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCE
T ss_pred             chhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHHHHH-HhcCCCCCCEE
Confidence                                   126999999999976  8999999999999999999999999999 55999999999


Q ss_pred             EEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCC
Q 021311          129 VQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       129 lI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      ||+|+ |++|++++|+|+.+|+ +++++.    .++++++.++++|+++++++++.. .+.+++.+++.+ +|++|||+|
T Consensus       171 lV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~----~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g-~D~v~d~~g  244 (352)
T 3fpc_A          171 CVIGI-GPVGLMSVAGANHLGAGRIFAVG----SRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKG-VDKVVIAGG  244 (352)
T ss_dssp             EEECC-SHHHHHHHHHHHTTTCSSEEEEC----CCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCC-EEEEEECSS
T ss_pred             EEECC-CHHHHHHHHHHHHcCCcEEEEEC----CCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCC-CCEEEECCC
Confidence            99997 9999999999999999 676655    378889999999999999987654 477899998877 999999999


Q ss_pred             Cc-cHHHHHHhcccCCEEEEEcCCCCC-Cccccccc--ceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcc
Q 021311          207 GN-SASKVLKFLSQGGTMVTYGGMSKK-PITVSTSA--FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK  282 (314)
Q Consensus       207 ~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~  282 (314)
                      ++ .+..++++|+++|+++.+|..... ..+++...  ...+++++.++....         ....++++++++++|+++
T Consensus       245 ~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---------~~~~~~~~~~l~~~g~i~  315 (352)
T 3fpc_A          245 DVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG---------GRLRMERLIDLVFYKRVD  315 (352)
T ss_dssp             CTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCC---------HHHHHHHHHHHHHTTSCC
T ss_pred             ChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccC---------chhHHHHHHHHHHcCCCC
Confidence            94 579999999999999999965532 23333222  234778888865421         134588999999999999


Q ss_pred             cc---ceeec-cccHHHHHHHHhccCCCCCceEeeC
Q 021311          283 YD---MELVP-FNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       283 ~~---~~~~~-~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.   ++.|+ |+++++||+.+.+++...+|+||++
T Consensus       316 ~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~  351 (352)
T 3fpc_A          316 PSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL  351 (352)
T ss_dssp             GGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEEC
T ss_pred             hhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            75   46899 9999999999999876644999985

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=5.1e-51  Score=357.59  Aligned_cols=289  Identities=21%  Similarity=0.263  Sum_probs=248.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|++.+        
T Consensus        25 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C  103 (357)
T 2cf5_A           25 YTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGC  103 (357)
T ss_dssp             EEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEECSSCCSCCTTCEEEECSEEECCSSS
T ss_pred             EEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCC
Confidence            567889999999999999999999999999887653 36799999999999999999999999999998531        


Q ss_pred             --------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCC-CCC
Q 021311           74 --------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLN-SGD  126 (314)
Q Consensus        74 --------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~  126 (314)
                                                ...|+|+||++++++.++++|+++++++||++++++.|||+++.+ ++++ +|+
T Consensus       104 ~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~-~~~~~~g~  182 (357)
T 2cf5_A          104 SPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSH-FGLKQPGL  182 (357)
T ss_dssp             HHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHHHH-TSTTSTTC
T ss_pred             hHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCC
Confidence                                      126999999999999999999999999999999999999999976 7888 999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|||+|+ |++|++++|+|+.+|++++++..    ++++++.++ ++|+++++++++.  +.+++.++   ++|++|||+
T Consensus       183 ~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~----~~~~~~~~~~~lGa~~vi~~~~~--~~~~~~~~---g~D~vid~~  252 (357)
T 2cf5_A          183 RGGILGL-GGVGHMGVKIAKAMGHHVTVISS----SNKKREEALQDLGADDYVIGSDQ--AKMSELAD---SLDYVIDTV  252 (357)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCEEEEEES----STTHHHHHHTTSCCSCEEETTCH--HHHHHSTT---TEEEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCeEEEEeC----ChHHHHHHHHHcCCceeeccccH--HHHHHhcC---CCCEEEECC
Confidence            9999997 99999999999999999888774    567778877 9999999998763  34555543   499999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD  284 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  284 (314)
                      |.+ .+..++++++++|+++.+|........++.. ++.+++++.|++...          .+.++++++++++|++++.
T Consensus       253 g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~  321 (357)
T 2cf5_A          253 PVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIGS----------MKETEEMLEFCKEKGLSSI  321 (357)
T ss_dssp             CSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSCC----------HHHHHHHHHHHHHTTCCCC
T ss_pred             CChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccCC----------HHHHHHHHHHHHcCCCCCc
Confidence            986 5789999999999999999654322124445 778999999876532          2457889999999999988


Q ss_pred             ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 ~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++|+++++++||+.+.+++..+ |+|+++
T Consensus       322 ~~~~~l~~~~~A~~~~~~~~~~g-Kvvi~~  350 (357)
T 2cf5_A          322 IEVVKMDYVNTAFERLEKNDVRY-RFVVDV  350 (357)
T ss_dssp             EEEEEGGGHHHHHHHHHTTCSSS-EEEEET
T ss_pred             eEEEeHHHHHHHHHHHHCCCCce-EEEEeC
Confidence            88999999999999999988777 999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-50  Score=357.89  Aligned_cols=294  Identities=20%  Similarity=0.271  Sum_probs=251.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhh-hhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDIN-RIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~-~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      +++|.|+|+++||+|||.++|||++|++ .+.|.++  ..+|.++|||++|+|+++|++|++|++||+|++.+.      
T Consensus        24 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C  101 (374)
T 1cdo_A           24 EEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGEC  101 (374)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSS
T ss_pred             EEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEECCCCccCCCCCEEEeCCCCCCCCC
Confidence            5778899999999999999999999999 8888765  367999999999999999999999999999997531      


Q ss_pred             -----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           75 -----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        75 -----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                               ..|+|+||+++++++++++|+++++++||++++++.|||
T Consensus       102 ~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~  181 (374)
T 1cdo_A          102 RFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGF  181 (374)
T ss_dssp             HHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHH
T ss_pred             hhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHH
Confidence                                                     138999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVKNVK  189 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~i~  189 (314)
                      +++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++..    ++++++.++++|+++++|+.+   ...+.++
T Consensus       182 ~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~----~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~  256 (374)
T 1cdo_A          182 GAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDL----NPDKFEKAKVFGATDFVNPNDHSEPISQVLS  256 (374)
T ss_dssp             HHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS----CGGGHHHHHHTTCCEEECGGGCSSCHHHHHH
T ss_pred             HHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC----CHHHHHHHHHhCCceEEeccccchhHHHHHH
Confidence            99988899999999999997 9999999999999999 5666652    678889999999999999874   2446688


Q ss_pred             HHhcCCCCCcEEEecCCC-ccHHHHHHhcccC-CEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          190 GLLANLPEPALGFNCVGG-NSASKVLKFLSQG-GTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      +.+++  ++|++|||+|. +.+..++++++++ |+++.+|.......++++..++.++ ++.|+++..+.       ..+
T Consensus       257 ~~~~~--g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~-------~~~  326 (374)
T 1cdo_A          257 KMTNG--GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFGGFK-------GKD  326 (374)
T ss_dssp             HHHTS--CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGGGCC-------HHH
T ss_pred             HHhCC--CCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecCCCC-------cHH
Confidence            88776  49999999998 4568999999999 9999999654434455555666677 88887654321       235


Q ss_pred             HHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++++++++++|++++.   ++.|+|+++++||+.+.+++. + |+||+|
T Consensus       327 ~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~-kvvi~~  374 (374)
T 1cdo_A          327 GVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-I-RTVLSL  374 (374)
T ss_dssp             HHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-S-EEEEEC
T ss_pred             HHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-e-EEEEeC
Confidence            68899999999999852   468999999999999988764 4 999986

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.6e-51  Score=355.97  Aligned_cols=288  Identities=23%  Similarity=0.307  Sum_probs=245.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccC--CC--CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC---C
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGV--YP--VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP---P   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~--~~--~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~---~   74 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.  ++  ....+|.++|||++|+|+++|++|++|++||+|++..   .
T Consensus        24 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~  103 (321)
T 3tqh_A           24 VDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPD  103 (321)
T ss_dssp             EEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECSTTT
T ss_pred             EecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCC
Confidence            577899999999999999999999999999882  11  1236799999999999999999999999999999875   2


Q ss_pred             CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEE
Q 021311           75 SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN  154 (314)
Q Consensus        75 ~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~  154 (314)
                      ..|+|+||++++++.++++|+++++++||+++++++|||+++ +.+++++|++|||+|++|++|++++|+|+.+|+++++
T Consensus       104 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~  182 (321)
T 3tqh_A          104 HPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVIT  182 (321)
T ss_dssp             CCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEE
Confidence            369999999999999999999999999999999999999999 6699999999999998899999999999999999888


Q ss_pred             EecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC
Q 021311          155 IIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP  233 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  233 (314)
                      ++     ++++++.++++|+++++|+++.. ..+.   .  . ++|++|||+|++.+..++++++++|+++.+|..... 
T Consensus       183 ~~-----~~~~~~~~~~lGa~~~i~~~~~~~~~~~---~--~-g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-  250 (321)
T 3tqh_A          183 TA-----SKRNHAFLKALGAEQCINYHEEDFLLAI---S--T-PVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAG-  250 (321)
T ss_dssp             EE-----CHHHHHHHHHHTCSEEEETTTSCHHHHC---C--S-CEEEEEESSCHHHHHHHGGGEEEEEEEEECCSTTHH-
T ss_pred             Ee-----ccchHHHHHHcCCCEEEeCCCcchhhhh---c--c-CCCEEEECCCcHHHHHHHHhccCCCEEEEeCCCCch-
Confidence            87     45668899999999999988754 3221   1  2 499999999998889999999999999999854322 


Q ss_pred             cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEe
Q 021311          234 ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                        ........+++++.++....     .    .+.++.+++++++|++++.+ +.|+++++++||+.+.+++..| |+|+
T Consensus       251 --~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvl  318 (321)
T 3tqh_A          251 --RVIEVAKQKHRRAFGLLKQF-----N----IEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRG-KLVF  318 (321)
T ss_dssp             --HHHHHHHHTTCEEECCCCCC-----C----HHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCS-EEEE
T ss_pred             --hhhhhhhhcceEEEEEecCC-----C----HHHHHHHHHHHHCCCcccccccEEcHHHHHHHHHHHHcCCCCc-eEEE
Confidence              11223456788887743211     1    35688999999999999875 5899999999999999999888 9999


Q ss_pred             eC
Q 021311          313 KF  314 (314)
Q Consensus       313 ~~  314 (314)
                      ++
T Consensus       319 ~~  320 (321)
T 3tqh_A          319 KV  320 (321)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.1e-51  Score=358.15  Aligned_cols=290  Identities=21%  Similarity=0.279  Sum_probs=246.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|++.+        
T Consensus        38 ~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C  116 (369)
T 1uuf_A           38 MDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHC  116 (369)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSS
T ss_pred             EEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEECCCCCCCCCCCEEEEccCCCCCCCC
Confidence            578999999999999999999999999999887543 35799999999999999999999999999998531        


Q ss_pred             ---------------------------CCCCcccceEeeeccceEEcCCC-CCHHHhhcccccHHHHHHHHHHhhcCCCC
Q 021311           74 ---------------------------PSSGTWQSYVVKDQSVWHKVSKD-SPMEYAATIIVNPLTALRMLEDFTTLNSG  125 (314)
Q Consensus        74 ---------------------------~~~g~~~~~~~~~~~~~~~~p~~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~~  125 (314)
                                                 ...|+|+||++++++.++++|++ +++++||++++++.|||+++.+ +++++|
T Consensus       117 ~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g  195 (369)
T 1uuf_A          117 EECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPG  195 (369)
T ss_dssp             HHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTT
T ss_pred             cccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCC
Confidence                                       12589999999999999999999 9999999999999999999987 689999


Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      ++|||+|+ |++|++++|+|+.+|++++++..    ++++++.++++|+++++|+.+..  .+.+..  . ++|++|||+
T Consensus       196 ~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~----~~~~~~~a~~lGa~~vi~~~~~~--~~~~~~--~-g~Dvvid~~  265 (369)
T 1uuf_A          196 KKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTT----SEAKREAAKALGADEVVNSRNAD--EMAAHL--K-SFDFILNTV  265 (369)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----SGGGHHHHHHHTCSEEEETTCHH--HHHTTT--T-CEEEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHcCCcEEeccccHH--HHHHhh--c-CCCEEEECC
Confidence            99999998 89999999999999999887773    67888899999999999987643  223333  2 499999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD  284 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  284 (314)
                      |.+ .+..++++|+++|+++.+|........++...++.+++++.|++...          .+.++++++++++|++++.
T Consensus       266 g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~i~~~  335 (369)
T 1uuf_A          266 AAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG----------IPETQEMLDFCAEHGIVAD  335 (369)
T ss_dssp             SSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCC----------HHHHHHHHHHHHHHTCCCC
T ss_pred             CCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCC----------HHHHHHHHHHHHhCCCCcc
Confidence            986 57899999999999999996543211455566778999999976532          1457889999999999988


Q ss_pred             ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 ~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.|+++++++||+.+.+++..+ |+|+++
T Consensus       336 i~~~~l~~~~~A~~~~~~~~~~g-Kvvi~~  364 (369)
T 1uuf_A          336 IEMIRADQINEAYERMLRGDVKY-RFVIDN  364 (369)
T ss_dssp             EEEECGGGHHHHHHHHHTTCSSS-EEEEEG
T ss_pred             eEEEcHHHHHHHHHHHHcCCCce-EEEEec
Confidence            88899999999999999887777 999864

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=5.1e-51  Score=359.28  Aligned_cols=299  Identities=21%  Similarity=0.248  Sum_probs=247.2

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------C
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------S   75 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------~   75 (314)
                      ++|.|+|+++||+|||.+++||++|++++.+.    +.+|.++|||++|+|+++|++|++|++||+|++...       .
T Consensus        28 ~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~  103 (371)
T 3gqv_A           28 AAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPD  103 (371)
T ss_dssp             EECCCCCCTTSEEEEEEEEECCGGGGC---------CCTTSCCCSEEEEEEEEECTTCCSCCTTCEEEEECCTTCTTCTT
T ss_pred             cCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC----CCCCccCccccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCCCC
Confidence            78999999999999999999999999988763    246899999999999999999999999999998752       2


Q ss_pred             CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh-hcC-----------CCCCEEEEcCCCcHHHHHHHH
Q 021311           76 SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF-TTL-----------NSGDSIVQNGATSIVGQCIIQ  143 (314)
Q Consensus        76 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~-----------~~~~~vlI~g~~g~~G~~a~~  143 (314)
                      .|+|+||++++++.++++|+++++++||++++++.|||+++.+. .++           ++|++|||+|++|++|++++|
T Consensus       104 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~q  183 (371)
T 3gqv_A          104 QGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQ  183 (371)
T ss_dssp             CCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHH
T ss_pred             CCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHH
Confidence            69999999999999999999999999999999999999999886 453           899999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCc-cHHHHHHhc-ccC
Q 021311          144 IARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGN-SASKVLKFL-SQG  220 (314)
Q Consensus       144 la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~-~~~~~~~~l-~~~  220 (314)
                      +|+..|+++++++     ++++++.++++|+++++|+++.+ .+.+++++++  ++|++|||+|++ .+..++++| +++
T Consensus       184 la~~~Ga~Vi~~~-----~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g--~~d~v~d~~g~~~~~~~~~~~l~~~~  256 (371)
T 3gqv_A          184 MLRLSGYIPIATC-----SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKN--NLRYALDCITNVESTTFCFAAIGRAG  256 (371)
T ss_dssp             HHHHTTCEEEEEE-----CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTT--CCCEEEESSCSHHHHHHHHHHSCTTC
T ss_pred             HHHHCCCEEEEEe-----CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccC--CccEEEECCCchHHHHHHHHHhhcCC
Confidence            9999999998887     56788899999999999998765 4678888877  499999999995 468899999 699


Q ss_pred             CEEEEEcCCCCC-----Ccccc---cccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---ceeec
Q 021311          221 GTMVTYGGMSKK-----PITVS---TSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---MELVP  289 (314)
Q Consensus       221 G~~v~~g~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~  289 (314)
                      |+++.+|.....     .....   ...++.+++++.|++.... ...+.+...+.++.+++++++|++++.   ++.|+
T Consensus       257 G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~  335 (371)
T 3gqv_A          257 GHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPG-SEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGG  335 (371)
T ss_dssp             EEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCC-CHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEC
T ss_pred             CEEEEEecCccccccccccceeeeeeeeeccccccccccccccc-cHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCc
Confidence            999999965431     12211   2346668888877643221 111123345667799999999999986   34599


Q ss_pred             cccHHHHHHHHhccCCCCCceEee
Q 021311          290 FNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       290 ~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      ++++++||+.+.+++..|.|+|++
T Consensus       336 l~~~~~A~~~l~~g~~~Gkkvvv~  359 (371)
T 3gqv_A          336 FDHIKQGMELVRKGELSGEKLVVR  359 (371)
T ss_dssp             HHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCceEEEEEE
Confidence            999999999999999888567765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1e-50  Score=357.96  Aligned_cols=292  Identities=21%  Similarity=0.266  Sum_probs=249.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++  ..+|.++|||++|+|+++|++|++|++||+|++.+.       
T Consensus        25 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~  102 (373)
T 1p0f_A           25 ETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCR  102 (373)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSH
T ss_pred             EEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEECCCCCccCCCCEEEECCCCCCCCCh
Confidence            57788999999999999999999999999998765  367999999999999999999999999999987631       


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|+||++++++.++++|++++++ ||++++++.|||+
T Consensus       103 ~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~  181 (373)
T 1p0f_A          103 ACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYG  181 (373)
T ss_dssp             HHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHH
T ss_pred             hhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHH
Confidence                                                    13899999999999999999999999 9999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~i~~  190 (314)
                      ++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.    .++++++.++++|+++++|+++   +..+.+++
T Consensus       182 ~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~----~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          182 AAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVG----THKDKFPKAIELGATECLNPKDYDKPIYEVICE  256 (373)
T ss_dssp             HHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEC----SCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH
T ss_pred             HHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEC----CCHHHHHHHHHcCCcEEEecccccchHHHHHHH
Confidence            9988899999999999997 9999999999999999 566655    2678889999999999999874   34567888


Q ss_pred             HhcCCCCCcEEEecCCC-ccHHHHHHhcccC-CEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          191 LLANLPEPALGFNCVGG-NSASKVLKFLSQG-GTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      .+++ + +|++|||+|. +.+..++++++++ |+++.+|.... ...++++..++.++ ++.|+++..+.    +    +
T Consensus       257 ~t~g-g-~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~----~----~  325 (373)
T 1p0f_A          257 KTNG-G-VDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFK----G----E  325 (373)
T ss_dssp             HTTS-C-BSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCC----G----G
T ss_pred             HhCC-C-CCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcC----H----H
Confidence            8876 4 9999999998 4568999999999 99999996543 23455555566677 88887654321    1    4


Q ss_pred             HHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++++++++++|++++.   ++.|+++++++||+.+.+++. + |+||+|
T Consensus       326 ~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~-kvvi~~  373 (373)
T 1p0f_A          326 EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-V-RSIMIY  373 (373)
T ss_dssp             GHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-S-EEEEEC
T ss_pred             HHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-c-eEEEeC
Confidence            57889999999999853   468999999999999988764 4 999976

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=3.5e-51  Score=369.16  Aligned_cols=297  Identities=24%  Similarity=0.254  Sum_probs=253.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhc----------------cCCCCCCCCC-ccCCcceEEEEEEecCCCCCC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIE----------------GVYPVRPKVP-AVGGYEGVGEVYSVGSAVTRL   63 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~----------------~~~~~~~~~p-~~~G~e~~G~V~~~G~~v~~~   63 (314)
                      ++|+|.|+|+++||+|||.++|||++|++...                +.++....+| .++|||++|+|+++|++|++|
T Consensus        52 ~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~  131 (447)
T 4a0s_A           52 LGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRW  131 (447)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSC
T ss_pred             EEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcccCccccccCCCCcccccceeEEEEEECCCCCCC
Confidence            35788999999999999999999999975421                2222222467 699999999999999999999


Q ss_pred             CCCCEEeeCCC--------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHH
Q 021311           64 APGDWVIPSPP--------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE  117 (314)
Q Consensus        64 ~~Gd~V~~~~~--------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~  117 (314)
                      ++||+|++.+.                          ..|+|+||+++++++++++|+++++++||+++.+++|||+++.
T Consensus       132 ~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~  211 (447)
T 4a0s_A          132 KPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLV  211 (447)
T ss_dssp             CTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHT
T ss_pred             CCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHH
Confidence            99999998641                          1499999999999999999999999999999999999999996


Q ss_pred             H--hhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-----------
Q 021311          118 D--FTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-----------  184 (314)
Q Consensus       118 ~--~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-----------  184 (314)
                      .  .+++++|++|||+|++|++|++++|+|+..|++++++++    ++++++.++++|+++++++.+..           
T Consensus       212 ~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~----~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~  287 (447)
T 4a0s_A          212 SDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS----SAQKEAAVRALGCDLVINRAELGITDDIADDPRR  287 (447)
T ss_dssp             STTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHH
T ss_pred             hhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHhcCCCEEEecccccccccccccccc
Confidence            4  388999999999999999999999999999999998883    78899999999999999875432           


Q ss_pred             --------HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhh
Q 021311          185 --------VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKW  256 (314)
Q Consensus       185 --------~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (314)
                              .+.+++.+ +.+ +|++|||+|.+.+..++++++++|+++.+|...+....++...++.+++++.|++...+
T Consensus       288 ~~~~~~~~~~~v~~~~-g~g-~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  365 (447)
T 4a0s_A          288 VVETGRKLAKLVVEKA-GRE-PDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANH  365 (447)
T ss_dssp             HHHHHHHHHHHHHHHH-SSC-CSEEEECSCHHHHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCH
T ss_pred             cchhhhHHHHHHHHHh-CCC-ceEEEECCCchHHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecCCCCH
Confidence                    46677777 544 99999999998789999999999999999976655556666677788999998765432


Q ss_pred             ccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          257 LSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                                +.+.++++++++|++++.+ ++|+++++++||+.+.+++..| |+||.+
T Consensus       366 ----------~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~G-Kvvv~~  413 (447)
T 4a0s_A          366 ----------EEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVG-KVAVLC  413 (447)
T ss_dssp             ----------HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSS-EEEEES
T ss_pred             ----------HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCce-EEEEEe
Confidence                      3456789999999999875 6899999999999999998888 998864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=2.5e-50  Score=355.64  Aligned_cols=294  Identities=21%  Similarity=0.292  Sum_probs=250.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++.  .+|.++|||++|+|+++|++|++|++||+|++.+.       
T Consensus        24 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~  101 (374)
T 2jhf_A           24 EEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCR  101 (374)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSH
T ss_pred             EEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC--CCCcccCcCceEEEEEECCCCCCCCCCCEEEECCCCCCCCCc
Confidence            577889999999999999999999999999987653  37999999999999999999999999999987531       


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|+||++++++.++++|+++++++||++++++.|||+
T Consensus       102 ~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~  181 (374)
T 2jhf_A          102 VCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYG  181 (374)
T ss_dssp             HHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHH
T ss_pred             cccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHH
Confidence                                                    1389999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~i~~  190 (314)
                      ++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++..    ++++++.++++|+++++|+++   ...+.+++
T Consensus       182 ~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~----~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          182 SAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDI----NKDKFAKAKEVGATECVNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             HHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS----CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHH
T ss_pred             HHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC----CHHHHHHHHHhCCceEecccccchhHHHHHHH
Confidence            9988899999999999997 9999999999999999 5666653    678889999999999999874   24466888


Q ss_pred             HhcCCCCCcEEEecCCC-ccHHHHHHhcccC-CEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          191 LLANLPEPALGFNCVGG-NSASKVLKFLSQG-GTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      .+++ + +|++|||+|. +.+..++++++++ |+++.+|.... ...++++..++.++ ++.|+++..+.       ..+
T Consensus       257 ~~~~-g-~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~-------~~~  326 (374)
T 2jhf_A          257 MSNG-G-VDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFGGFK-------SKD  326 (374)
T ss_dssp             HTTS-C-BSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCC-------HHH
T ss_pred             HhCC-C-CcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccCCCC-------hHH
Confidence            7776 4 9999999998 4568999999999 99999996543 23455556666677 88887654321       135


Q ss_pred             HHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++++++++++|++++.   ++.|+|+++++||+.+.+++. + |+||+|
T Consensus       327 ~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~-Kvvi~~  374 (374)
T 2jhf_A          327 SVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-I-RTILTF  374 (374)
T ss_dssp             HHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-S-EEEEEC
T ss_pred             HHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-c-eEEEeC
Confidence            68899999999999752   468999999999999988764 4 999986

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2e-50  Score=356.27  Aligned_cols=295  Identities=21%  Similarity=0.279  Sum_probs=251.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-------   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-------   74 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++|++|++||+|++.+.       
T Consensus        22 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~  100 (373)
T 2fzw_A           22 EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECK  100 (373)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSH
T ss_pred             EEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEECCCCCCCCCCCEEEECCCCCCCCCh
Confidence            577889999999999999999999999999987653 367999999999999999999999999999987531       


Q ss_pred             ----------------------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           75 ----------------------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        75 ----------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                                                              ..|+|+||++++++.++++|+++++++||++++++.|||+
T Consensus       101 ~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~  180 (373)
T 2fzw_A          101 FCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG  180 (373)
T ss_dssp             HHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHH
T ss_pred             HHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHH
Confidence                                                    1389999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hhHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LEVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~i~~  190 (314)
                      ++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++..    ++++++.++++|+++++++++   ...+.+++
T Consensus       181 ~l~~~~~~~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~----~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          181 AAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDI----NKDKFARAKEFGATECINPQDFSKPIQEVLIE  255 (373)
T ss_dssp             HHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECS----CGGGHHHHHHHTCSEEECGGGCSSCHHHHHHH
T ss_pred             HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC----CHHHHHHHHHcCCceEeccccccccHHHHHHH
Confidence            9988899999999999997 9999999999999999 5666652    678889999999999999874   34567888


Q ss_pred             HhcCCCCCcEEEecCCC-ccHHHHHHhcccC-CEEEEEcCCCC-CCcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          191 LLANLPEPALGFNCVGG-NSASKVLKFLSQG-GTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      .+++ + +|++|||+|. +.+..++++++++ |+++.+|.... ...++++..++.++ ++.|+++..+.       .++
T Consensus       256 ~~~~-g-~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~-------~~~  325 (373)
T 2fzw_A          256 MTDG-G-VDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWK-------SVE  325 (373)
T ss_dssp             HTTS-C-BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCC-------HHH
T ss_pred             HhCC-C-CCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccCCCC-------cHH
Confidence            8776 4 9999999998 4568999999999 99999996543 23455555666677 88887654321       235


Q ss_pred             HHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++++++++++|++++.   ++.|+|+++++||+.+.+++. + |+||+|
T Consensus       326 ~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~-kvvi~~  373 (373)
T 2fzw_A          326 SVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-I-RTVVKI  373 (373)
T ss_dssp             HHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-S-EEEEEC
T ss_pred             HHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-c-eEEEeC
Confidence            68899999999999852   468999999999999988764 4 999976

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.8e-51  Score=354.92  Aligned_cols=288  Identities=17%  Similarity=0.190  Sum_probs=233.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC--CCCcc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP--SSGTW   79 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~--~~g~~   79 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|++...  ..|+|
T Consensus        20 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G~~   98 (315)
T 3goh_A           20 NSVDIPALAADDILVQNQAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSF   98 (315)
T ss_dssp             EEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEECCTTSCCSS
T ss_pred             EecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeCCCCCCccc
Confidence            578899999999999999999999999999998754 368999999999999999999999999999999752  26999


Q ss_pred             cceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311           80 QSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus        80 ~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      +||++++++.++++|+++++++||+++.+++|||+++ +.+++++|++|||+|+ |++|++++|+|+.+|+++++++   
T Consensus        99 aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~---  173 (315)
T 3goh_A           99 AEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS---  173 (315)
T ss_dssp             BSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC---
T ss_pred             ccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE---
Confidence            9999999999999999999999999999999999999 7799999999999999 9999999999999999888887   


Q ss_pred             CCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccc
Q 021311          160 AGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS  239 (314)
Q Consensus       160 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  239 (314)
                        ++++++.++++|++++++  +  .+++     +. ++|++|||+|++.+..++++++++|+++.+|.....    ...
T Consensus       174 --~~~~~~~~~~lGa~~v~~--d--~~~v-----~~-g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~  237 (315)
T 3goh_A          174 --ASLSQALAAKRGVRHLYR--E--PSQV-----TQ-KYFAIFDAVNSQNAAALVPSLKANGHIICIQDRIPA----PID  237 (315)
T ss_dssp             --SSCCHHHHHHHTEEEEES--S--GGGC-----CS-CEEEEECC-------TTGGGEEEEEEEEEECCC----------
T ss_pred             --ChhhHHHHHHcCCCEEEc--C--HHHh-----CC-CccEEEECCCchhHHHHHHHhcCCCEEEEEeCCCCc----ccc
Confidence              356678889999999984  2  2233     33 499999999998888899999999999999744321    111


Q ss_pred             cceecceEEEEEechhhccccCHH---HHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          240 AFIFKDLSLKGFWLQKWLSSEKAT---ECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..+.+++.+....+........+.   ...+.++.+++++++|++++.+ +.|+++++++||+.+.  +..| |+|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~g-Kvvi~~  313 (315)
T 3goh_A          238 PAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSE--QTKL-KTVLTL  313 (315)
T ss_dssp             ----CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHH--HHCC-CEEEES
T ss_pred             chhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcccccceEecHHHHHHHHHHHH--hcCC-cEEEEe
Confidence            233455666666554432222333   4567789999999999999875 6899999999999998  5566 999975

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-50  Score=353.75  Aligned_cols=291  Identities=20%  Similarity=0.257  Sum_probs=234.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC-CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~-~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++ ++|++||+|+++..     
T Consensus        18 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~~~GdrV~~~~~~~Cg~   96 (344)
T 2h6e_A           18 IEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKVKKGDNVVVYATWGDLT   96 (344)
T ss_dssp             --EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCCCTTCEEEECSCBCCSC
T ss_pred             EEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCCCCCCEEEECCCCCCCC
Confidence            3678889999999999999999999999999987652 2367999999999999999999 99999999987631     


Q ss_pred             ---------------------CCCcccceEeee-ccceEEcCCCCCHHHhhcccccHHHHHHHHHHh----hcCCCCCEE
Q 021311           75 ---------------------SSGTWQSYVVKD-QSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF----TTLNSGDSI  128 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~----~~~~~~~~v  128 (314)
                                           ..|+|+||++++ +++++++ +++++++||.+++++.|||+++.+.    +++ +|++|
T Consensus        97 C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~V  174 (344)
T 2h6e_A           97 CRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVV  174 (344)
T ss_dssp             STTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEE
T ss_pred             ChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEE
Confidence                                 259999999999 9999999 9999999999999999999999874    288 99999


Q ss_pred             EEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-hhHHHHHHHhcCCCCCcEEEecC
Q 021311          129 VQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-LEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       129 lI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      ||+|+ |++|++++|+|+.+  |++++++..    ++++++.++++|+++++|+++ ..  .+.+++.+.+ +|++|||+
T Consensus       175 lV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~----~~~~~~~~~~lGa~~vi~~~~~~~--~~~~~~~g~g-~D~vid~~  246 (344)
T 2h6e_A          175 IVNGI-GGLAVYTIQILKALMKNITIVGISR----SKKHRDFALELGADYVSEMKDAES--LINKLTDGLG-ASIAIDLV  246 (344)
T ss_dssp             EEECC-SHHHHHHHHHHHHHCTTCEEEEECS----CHHHHHHHHHHTCSEEECHHHHHH--HHHHHHTTCC-EEEEEESS
T ss_pred             EEECC-CHHHHHHHHHHHHhcCCCEEEEEeC----CHHHHHHHHHhCCCEEeccccchH--HHHHhhcCCC-ccEEEECC
Confidence            99999 99999999999999  999877763    788899999999999998875 32  3445555544 99999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD  284 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  284 (314)
                      |.+ .+..++++++++|+++.+|... .+..++...++.+++++.|++...          .+.++++++++++|++++.
T Consensus       247 g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~i~~~  315 (344)
T 2h6e_A          247 GTEETTYNLGKLLAQEGAIILVGMEG-KRVSLEAFDTAVWNKKLLGSNYGS----------LNDLEDVVRLSESGKIKPY  315 (344)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEECCCCS-SCCCCCHHHHHHTTCEEEECCSCC----------HHHHHHHHHHHHTTSSCCC
T ss_pred             CChHHHHHHHHHhhcCCEEEEeCCCC-CCcccCHHHHhhCCcEEEEEecCC----------HHHHHHHHHHHHcCCCCcc
Confidence            997 6799999999999999999654 334556666778999999875432          2567889999999999987


Q ss_pred             ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 ~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++|+|+++++||+.+.+++..| |+|+++
T Consensus       316 i~~~~l~~~~~A~~~~~~~~~~g-Kvvl~~  344 (344)
T 2h6e_A          316 IIKVPLDDINKAFTNLDEGRVDG-RQVITP  344 (344)
T ss_dssp             EEEECC----------------C-EEEECC
T ss_pred             eEEEeHHHHHHHHHHHHcCCCce-EEEEeC
Confidence            78899999999999999888777 999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=4.5e-51  Score=359.29  Aligned_cols=293  Identities=19%  Similarity=0.296  Sum_probs=250.0

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-------   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-------   73 (314)
                      ++++|.|+|+++||+|||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|++|++|++||+|++.+       
T Consensus        37 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C  114 (370)
T 4ej6_A           37 VRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS--TPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRC  114 (370)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSEECCCSEEEEEEEECTTCCSSCTTCEEEECCEECCSSS
T ss_pred             EEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCCC--CCCeecCcceEEEEEEECCCCCCCCCCCEEEECCCCCCCCC
Confidence            3678999999999999999999999999999998643  6799999999999999999999999999998743       


Q ss_pred             -------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCC
Q 021311           74 -------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGAT  134 (314)
Q Consensus        74 -------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  134 (314)
                                         ...|+|+||++++++.++++|+++++++|| ++.++.|||+++ +.+++++|++|||+|+ 
T Consensus       115 ~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-  191 (370)
T 4ej6_A          115 PQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGG-  191 (370)
T ss_dssp             HHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECC-
T ss_pred             hHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECC-
Confidence                               126999999999999999999999999998 556899999999 5599999999999998 


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHH---HhcCCCCCcEEEecCCCc-c
Q 021311          135 SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKG---LLANLPEPALGFNCVGGN-S  209 (314)
Q Consensus       135 g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~---~~~~~g~~d~v~d~~g~~-~  209 (314)
                      |++|++++|+|+.+|++.+++++   .++++++.++++|+++++|+++.+ .+.+++   ++++  ++|++|||+|.. .
T Consensus       192 G~vG~~aiqlak~~Ga~~Vi~~~---~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~g--g~Dvvid~~G~~~~  266 (370)
T 4ej6_A          192 GVIGLLTVQLARLAGATTVILST---RQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPG--GVDVVIECAGVAET  266 (370)
T ss_dssp             SHHHHHHHHHHHHTTCSEEEEEC---SCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTT--CEEEEEECSCCHHH
T ss_pred             CHHHHHHHHHHHHcCCCEEEEEC---CCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCC--CCCEEEECCCCHHH
Confidence            99999999999999994444443   378899999999999999987654 466776   6666  499999999974 5


Q ss_pred             HHHHHHhcccCCEEEEEcCCCCC-CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc---c
Q 021311          210 ASKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD---M  285 (314)
Q Consensus       210 ~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~---~  285 (314)
                      +..++++++++|+++.+|..... +.+++...++.+++++.|++...           ..++.+++++++|++++.   +
T Consensus       267 ~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~l~~~g~i~~~~~i~  335 (370)
T 4ej6_A          267 VKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINP-----------FVHRRAADLVATGAIEIDRMIS  335 (370)
T ss_dssp             HHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCT-----------TCHHHHHHHHHTTCSCCGGGEE
T ss_pred             HHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccCh-----------HHHHHHHHHHHcCCCChhHcEE
Confidence            69999999999999999976543 45677778888999999986532           226889999999999753   4


Q ss_pred             eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          286 ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       286 ~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.|+|+++++||+.+.+++....|+++++
T Consensus       336 ~~~~l~~~~~A~~~~~~~~~~~~kvv~~~  364 (370)
T 4ej6_A          336 RRISLDEAPDVISNPAAAGEVKVLVIPSA  364 (370)
T ss_dssp             EEECGGGHHHHHHSCCCTTCSEEEECCC-
T ss_pred             EEEEHHHHHHHHHHHHcCCCCeEEEEEcc
Confidence            68999999999999998875544888764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.5e-50  Score=353.73  Aligned_cols=292  Identities=24%  Similarity=0.280  Sum_probs=248.9

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhcc-CCC-CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEG-VYP-VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----   74 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~-~~~-~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----   74 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.| .++ ....+|.++|||++|+|+++|++|++|++||+|++.+.     
T Consensus        20 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~   99 (348)
T 2d8a_A           20 VEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGK   99 (348)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSC
T ss_pred             EECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCcCCCCCEEEEcCCCCCCC
Confidence            57889999999999999999999999999988 432 11257899999999999999999999999999998631     


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                           ..|+|+||++++++.++++|+++++++||+++ ++.|||+++ +.+++ +|++|||+|+
T Consensus       100 C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~Ga  176 (348)
T 2d8a_A          100 CYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGA  176 (348)
T ss_dssp             CC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECC
T ss_pred             ChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECC
Confidence                                 25999999999999999999999999999886 788999999 55889 9999999999


Q ss_pred             CcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCC-ccH
Q 021311          134 TSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGG-NSA  210 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~-~~~  210 (314)
                       |++|++++|+|+.+|+ +++++.+    ++++++.++++|+++++++++.. .+.+++.+++.+ +|++|||+|. +.+
T Consensus       177 -G~vG~~~~q~a~~~Ga~~Vi~~~~----~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g-~D~vid~~g~~~~~  250 (348)
T 2d8a_A          177 -GPLGLLGIAVAKASGAYPVIVSEP----SDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNG-VDVFLEFSGAPKAL  250 (348)
T ss_dssp             -SHHHHHHHHHHHHTTCCSEEEECS----CHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSC-EEEEEECSCCHHHH
T ss_pred             -CHHHHHHHHHHHHcCCCEEEEECC----CHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCC-CCEEEECCCCHHHH
Confidence             9999999999999999 8888773    78888999999999999987654 467888887766 9999999998 556


Q ss_pred             HHHHHhcccCCEEEEEcCCCCCCccccc-ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcc--ccc-e
Q 021311          211 SKVLKFLSQGGTMVTYGGMSKKPITVST-SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK--YDM-E  286 (314)
Q Consensus       211 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--~~~-~  286 (314)
                      ..++++++++|+++.+|.... +..++. ..++.+++++.|++...         ..+.++++++++++|+++  +.+ +
T Consensus       251 ~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~---------~~~~~~~~~~l~~~g~i~~~~~i~~  320 (348)
T 2d8a_A          251 EQGLQAVTPAGRVSLLGLYPG-KVTIDFNNLIIFKALTIYGITGRH---------LWETWYTVSRLLQSGKLNLDPIITH  320 (348)
T ss_dssp             HHHHHHEEEEEEEEECCCCSS-CCCCCHHHHTTTTTCEEEECCCCC---------SHHHHHHHHHHHHHTCCCCTTTEEE
T ss_pred             HHHHHHHhcCCEEEEEccCCC-CcccCchHHHHhCCcEEEEecCCC---------cHHHHHHHHHHHHcCCCChHHhhee
Confidence            899999999999999996543 445555 66778999999875422         135578899999999964  433 6


Q ss_pred             eec-cccHHHHHHHHhccCCCCCceEeeC
Q 021311          287 LVP-FNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       287 ~~~-~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +|+ ++++++||+.+.+ +..+ |+||++
T Consensus       321 ~~~gl~~~~~A~~~~~~-~~~g-Kvvi~~  347 (348)
T 2d8a_A          321 KYKGFDKYEEAFELMRA-GKTG-KVVFML  347 (348)
T ss_dssp             EEESSTTHHHHHHHHHT-TCCS-EEEEEC
T ss_pred             eCCCHHHHHHHHHHHhC-CCce-EEEEee
Confidence            899 9999999999977 5555 999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2.5e-50  Score=353.73  Aligned_cols=288  Identities=21%  Similarity=0.219  Sum_probs=248.4

Q ss_pred             cc--CCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCC-CCCCCCEEeeC------
Q 021311            2 IE--LPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT-RLAPGDWVIPS------   72 (314)
Q Consensus         2 ~~--~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~------   72 (314)
                      ++  +|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|+ +|++||+|+..      
T Consensus        22 ~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~c  100 (360)
T 1piw_A           22 KKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSC  100 (360)
T ss_dssp             EEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECC
T ss_pred             EeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEeCCCCCCCCCCCCEEEEecCCCCC
Confidence            46  8899999999999999999999999999987653 35799999999999999999999 99999999431      


Q ss_pred             --------------------C--------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCC
Q 021311           73 --------------------P--------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNS  124 (314)
Q Consensus        73 --------------------~--------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  124 (314)
                                          .        ...|+|+||++++++.++++|+++++++||++++++.|||+++.+ +++++
T Consensus       101 g~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~  179 (360)
T 1piw_A          101 LECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGP  179 (360)
T ss_dssp             SCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCST
T ss_pred             CCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCC
Confidence                                1        125899999999999999999999999999999999999999987 89999


Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hH-HHHHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EV-KNVKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~-~~i~~~~~~~g~~d~v~  202 (314)
                      |++|||+|+ |++|++++|+|+.+|++++++..    ++++++.++++|+++++++++. .. +.++    +  ++|++|
T Consensus       180 g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~----~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~----~--~~D~vi  248 (360)
T 1piw_A          180 GKKVGIVGL-GGIGSMGTLISKAMGAETYVISR----SSRKREDAMKMGADHYIATLEEGDWGEKYF----D--TFDLIV  248 (360)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTCEEEEEES----SSTTHHHHHHHTCSEEEEGGGTSCHHHHSC----S--CEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHcCCCEEEcCcCchHHHHHhh----c--CCCEEE
Confidence            999999999 99999999999999999888774    5677888999999999998764 32 3332    2  499999


Q ss_pred             ecCCC---ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcC
Q 021311          203 NCVGG---NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       203 d~~g~---~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      ||+|.   ..+..++++|+++|+++.+|.... ...++...++.+++++.|++...          .+.++++++++++|
T Consensus       249 d~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g  317 (360)
T 1piw_A          249 VCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGS----------IKELNQLLKLVSEK  317 (360)
T ss_dssp             ECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCC----------HHHHHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCC----------HHHHHHHHHHHHhC
Confidence            99998   566899999999999999996544 11455666778999999875532          24578899999999


Q ss_pred             Cccccceeecccc--HHHHHHHHhccCCCCCceEeeC
Q 021311          280 KLKYDMELVPFNN--FQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       280 ~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++.+++|++++  +++||+.+.+++..| |+|+++
T Consensus       318 ~l~~~i~~~~l~~~~~~~A~~~~~~~~~~g-Kvvi~~  353 (360)
T 1piw_A          318 DIKIWVETLPVGEAGVHEAFERMEKGDVRY-RFTLVG  353 (360)
T ss_dssp             TCCCCEEEEESSHHHHHHHHHHHHHTCCSS-EEEEEC
T ss_pred             CCcceEEEEeccHhHHHHHHHHHHCCCCce-EEEEec
Confidence            9998888899999  999999999888777 999875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.9e-50  Score=349.07  Aligned_cols=293  Identities=22%  Similarity=0.257  Sum_probs=247.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhcc-CCCC-CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEG-VYPV-RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-----   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~-~~~~-~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-----   73 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.+ ..+. ...+|.++|||++|+|+++|++|++|++||+|++.+     
T Consensus        18 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg   97 (352)
T 1e3j_A           18 LEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCR   97 (352)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCS
T ss_pred             EEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCC
Confidence            357889999999999999999999999998874 3321 225789999999999999999999999999999753     


Q ss_pred             ----------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           74 ----------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        74 ----------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                                            ...|+|+||+++++++++++|+++++++||++ .++.|||+++ +.+++++|++|||+
T Consensus        98 ~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~  175 (352)
T 1e3j_A           98 RCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVI  175 (352)
T ss_dssp             SSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEE
T ss_pred             CChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEE
Confidence                                  12699999999999999999999999999876 4788999999 55899999999999


Q ss_pred             CCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC--hhhHHHHHHHhc---CCCCCcEEEecCC
Q 021311          132 GATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES--QLEVKNVKGLLA---NLPEPALGFNCVG  206 (314)
Q Consensus       132 g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~--~~~~~~i~~~~~---~~g~~d~v~d~~g  206 (314)
                      |+ |++|++++|+|+.+|++++++.    .++++++.++++|++++++++  .+..+++++.++   +.+ +|++|||+|
T Consensus       176 Ga-G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g-~D~vid~~g  249 (352)
T 1e3j_A          176 GA-GPIGLVSVLAAKAYGAFVVCTA----RSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL-PNVTIDCSG  249 (352)
T ss_dssp             CC-SHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSC-CSEEEECSC
T ss_pred             CC-CHHHHHHHHHHHHcCCEEEEEc----CCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCC-CCEEEECCC
Confidence            98 9999999999999999976666    378889999999999999987  345677888776   444 999999999


Q ss_pred             Cc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc--
Q 021311          207 GN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY--  283 (314)
Q Consensus       207 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--  283 (314)
                      .. .+..++++++++|+++.+|... .+.+++...++.+++++.+++..           .+.++++++++++|++++  
T Consensus       250 ~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~-----------~~~~~~~~~l~~~g~i~~~~  317 (352)
T 1e3j_A          250 NEKCITIGINITRTGGTLMLVGMGS-QMVTVPLVNACAREIDIKSVFRY-----------CNDYPIALEMVASGRCNVKQ  317 (352)
T ss_dssp             CHHHHHHHHHHSCTTCEEEECSCCS-SCCCCCHHHHHTTTCEEEECCSC-----------SSCHHHHHHHHHTTSCCCGG
T ss_pred             CHHHHHHHHHHHhcCCEEEEEecCC-CCccccHHHHHhcCcEEEEeccc-----------hHHHHHHHHHHHcCCCChHH
Confidence            86 4689999999999999998533 33455666777899999987542           134788999999999764  


Q ss_pred             c-ceeeccccHHHHHHHHhccC-CCCCceEeeC
Q 021311          284 D-MELVPFNNFQTALSKALGLH-GSQPKQVIKF  314 (314)
Q Consensus       284 ~-~~~~~~~~~~~a~~~~~~~~-~~~~k~vi~~  314 (314)
                      . ++.|+++++++||+.+.+++ ..+ |+||++
T Consensus       318 ~i~~~~~l~~~~~A~~~~~~~~~~~~-Kvvi~~  349 (352)
T 1e3j_A          318 LVTHSFKLEQTVDAFEAARKKADNTI-KVMISC  349 (352)
T ss_dssp             GEEEEEEGGGHHHHHHHHHHCCTTCS-EEEEEC
T ss_pred             heeEEecHHHHHHHHHHHhcCCCCce-EEEEec
Confidence            3 46899999999999999887 466 999975

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.2e-50  Score=353.94  Aligned_cols=291  Identities=20%  Similarity=0.294  Sum_probs=250.6

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCC------CCCCCCEEeeCC--
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT------RLAPGDWVIPSP--   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~------~~~~Gd~V~~~~--   73 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++| +|+      +|++||+|++.+  
T Consensus        33 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~P~v~GhE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~~~  110 (380)
T 1vj0_A           33 KEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVN-GEKRDLNGELLKPGDLIVWNRGI  110 (380)
T ss_dssp             EEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEES-SCCBCTTSCBCCTTCEEEECSEE
T ss_pred             EEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCC-CCCCcccCcCcEEEEEEeC-CccccccCCCCCCCCEEEEcccC
Confidence            577889999999999999999999999999987652 3579999999999999999 999      999999999742  


Q ss_pred             ---------------------------------CCCCcccceEee-eccceEEcCCCCCHH-HhhcccccHHHHHHHHHH
Q 021311           74 ---------------------------------PSSGTWQSYVVK-DQSVWHKVSKDSPME-YAATIIVNPLTALRMLED  118 (314)
Q Consensus        74 ---------------------------------~~~g~~~~~~~~-~~~~~~~~p~~~~~~-~aa~~~~~~~ta~~~l~~  118 (314)
                                                       ...|+|+||+++ +++.++++|++++++ +|++++ +++|||+++.+
T Consensus       111 ~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al~~  189 (380)
T 1vj0_A          111 TCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAFDE  189 (380)
T ss_dssp             CCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHHHT
T ss_pred             CCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHHHh
Confidence                                             125999999999 999999999999999 777776 99999999955


Q ss_pred             hhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecC---hhh-HHHHHHHh
Q 021311          119 FTT-LNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTES---QLE-VKNVKGLL  192 (314)
Q Consensus       119 ~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~---~~~-~~~i~~~~  192 (314)
                       ++ +++|++|||+| +|++|++++|+|+.+|+ +++++..    ++++++.++++|++++++++   +.+ .+.+++.+
T Consensus       190 -~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~----~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          190 -YPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG----SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             -CSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES----CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred             -cCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC----CHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHh
Confidence             88 99999999999 59999999999999995 8888873    78899999999999999987   544 46788888


Q ss_pred             cCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCC-CCCccccccc-ceecceEEEEEechhhccccCHHHHHHHH
Q 021311          193 ANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMS-KKPITVSTSA-FIFKDLSLKGFWLQKWLSSEKATECRNMI  269 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (314)
                      ++.+ +|++|||+|.+ .+..++++|+++|+++.+|... +.+.+++... ++.+++++.|++...          .+.+
T Consensus       264 ~g~g-~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~  332 (380)
T 1vj0_A          264 HGRG-ADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD----------TSHF  332 (380)
T ss_dssp             TTSC-EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC----------HHHH
T ss_pred             CCCC-CcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecCC----------HHHH
Confidence            7766 99999999985 6689999999999999999765 4345566666 788999999976532          3568


Q ss_pred             HHHHHHHHc--CCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          270 DYLLCLARE--GKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       270 ~~~~~~l~~--g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++++  |++++.+ +.|+|+++++||+.+.+++..  |+||++
T Consensus       333 ~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~--Kvvl~~  378 (380)
T 1vj0_A          333 VKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL--KVILYP  378 (380)
T ss_dssp             HHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS--CEEEEC
T ss_pred             HHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc--eEEEEe
Confidence            899999999  9997664 689999999999999887654  999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=5.3e-50  Score=350.15  Aligned_cols=295  Identities=21%  Similarity=0.261  Sum_probs=254.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC-------CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-------RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~-------~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~   73 (314)
                      ++++|.|+|+++||+|||.++|||++|++++.|.++.       ...+|.++|||++|+|+++|++|++|++||+|+++.
T Consensus        15 ~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~   94 (347)
T 1jvb_A           15 LQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNP   94 (347)
T ss_dssp             EEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCCCCCCCCCCEEEeCC
Confidence            3578999999999999999999999999999886542       236799999999999999999999999999998753


Q ss_pred             C--------------------------CCCcccceEeeec-cceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCC
Q 021311           74 P--------------------------SSGTWQSYVVKDQ-SVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGD  126 (314)
Q Consensus        74 ~--------------------------~~g~~~~~~~~~~-~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  126 (314)
                      .                          ..|+|+||+++++ +.++++ +++++++||.+++++.|||+++.+ +++++|+
T Consensus        95 ~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~  172 (347)
T 1jvb_A           95 WQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRK-ASLDPTK  172 (347)
T ss_dssp             EECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHHHH-TTCCTTC
T ss_pred             CCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhHHHHHHHHHh-cCCCCCC
Confidence            1                          2589999999999 999999 999999999999999999999976 8999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|||+|++|++|++++|+++.. |++++++.+    ++++++.++++|+++++++.+.. .+.+.+.+... ++|++|||
T Consensus       173 ~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~~  247 (347)
T 1jvb_A          173 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV----REEAVEAAKRAGADYVINASMQDPLAEIRRITESK-GVDAVIDL  247 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEES----SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTS-CEEEEEES
T ss_pred             EEEEECCCccHHHHHHHHHHHcCCCeEEEEcC----CHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCC-CceEEEEC
Confidence            9999999779999999999999 999887773    67888889999999999887643 45577776522 49999999


Q ss_pred             CCCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc
Q 021311          205 VGGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY  283 (314)
Q Consensus       205 ~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~  283 (314)
                      +|.+ .+..++++++++|+++.+|.....+ +++...++.+++++.+++...          .+.++++++++++|++++
T Consensus       248 ~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~  316 (347)
T 1jvb_A          248 NNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGN----------QSDFLGIMRLAEAGKVKP  316 (347)
T ss_dssp             CCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCC----------HHHHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccC----------HHHHHHHHHHHHcCCCCc
Confidence            9987 6688999999999999999665233 556666778999999875532          256788999999999988


Q ss_pred             cc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          284 DM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       284 ~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .+ ++|+++++++||+.+.+++..| |+||++
T Consensus       317 ~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvl~~  347 (347)
T 1jvb_A          317 MITKTMKLEEANEAIDNLENFKAIG-RQVLIP  347 (347)
T ss_dssp             CCEEEEEGGGHHHHHHHHHTTCCCS-EEEEEC
T ss_pred             eEEEEEcHHHHHHHHHHHHCCCCcc-eEEecC
Confidence            76 7899999999999999988777 999975

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2.3e-50  Score=351.89  Aligned_cols=291  Identities=20%  Similarity=0.196  Sum_probs=248.5

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~------   73 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++.  ...+|.++|||++|+|+++|++|++|++||+|++.+      
T Consensus        16 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~   95 (343)
T 2dq4_A           16 VDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHA   95 (343)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSCTTCEEEECCEECCSC
T ss_pred             EeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCCCCCEEEECCCCCCCC
Confidence            578999999999999999999999999999886531  125789999999999999999999999999999853      


Q ss_pred             --------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           74 --------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        74 --------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                          ...|+|+||++++++.++++|+++++++||++. ++.|||+++.+.+++ +|++|||+|+
T Consensus        96 C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~Ga  173 (343)
T 2dq4_A           96 CPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGA  173 (343)
T ss_dssp             SHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECC
T ss_pred             ChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECC
Confidence                                125999999999999999999999999999874 788999999746889 9999999999


Q ss_pred             CcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCC-ccH
Q 021311          134 TSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGG-NSA  210 (314)
Q Consensus       134 ~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~-~~~  210 (314)
                       |++|++++|+|+.+|+ +++++.+    ++++++.++++ +++++++++.. .+.+++.+ +.+ +|++|||+|. +.+
T Consensus       174 -G~vG~~~~q~a~~~Ga~~Vi~~~~----~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~-~~g-~D~vid~~g~~~~~  245 (343)
T 2dq4_A          174 -GPIGLMAAMVVRASGAGPILVSDP----NPYRLAFARPY-ADRLVNPLEEDLLEVVRRVT-GSG-VEVLLEFSGNEAAI  245 (343)
T ss_dssp             -SHHHHHHHHHHHHTTCCSEEEECS----CHHHHGGGTTT-CSEEECTTTSCHHHHHHHHH-SSC-EEEEEECSCCHHHH
T ss_pred             -CHHHHHHHHHHHHcCCCEEEEECC----CHHHHHHHHHh-HHhccCcCccCHHHHHHHhc-CCC-CCEEEECCCCHHHH
Confidence             9999999999999999 8888773    68888899999 99999987654 46688777 555 9999999998 566


Q ss_pred             HHHHHhcccCCEEEEEcCCCCCCccccc-ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcc--cc-ce
Q 021311          211 SKVLKFLSQGGTMVTYGGMSKKPITVST-SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK--YD-ME  286 (314)
Q Consensus       211 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--~~-~~  286 (314)
                      ..++++|+++|+++.+|... .+..++. ..++.+++++.|++...         ..+.++++++++++|+++  +. ++
T Consensus       246 ~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---------~~~~~~~~~~l~~~g~~~~~~~i~~  315 (343)
T 2dq4_A          246 HQGLMALIPGGEARILGIPS-DPIRFDLAGELVMRGITAFGIAGRR---------LWQTWMQGTALVYSGRVDLSPLLTH  315 (343)
T ss_dssp             HHHHHHEEEEEEEEECCCCS-SCEEECHHHHTGGGTCEEEECCSCC---------TTHHHHHHHHHHHHTSSCCGGGEEE
T ss_pred             HHHHHHHhcCCEEEEEecCC-CCceeCcHHHHHhCceEEEEeecCC---------CHHHHHHHHHHHHcCCCChHHheeE
Confidence            89999999999999999643 3455666 66788999999975431         125578899999999964  44 46


Q ss_pred             eeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          287 LVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       287 ~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .|+++++++||+.+.+++. + |+|+++
T Consensus       316 ~~~l~~~~~A~~~~~~~~~-g-Kvv~~~  341 (343)
T 2dq4_A          316 RLPLSRYREAFGLLASGQA-V-KVILDP  341 (343)
T ss_dssp             EEEGGGHHHHHHHHHHSSC-S-EEEEET
T ss_pred             EecHHHHHHHHHHHhcCCc-e-EEEEee
Confidence            8999999999999998776 6 999975

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=9.8e-50  Score=349.47  Aligned_cols=291  Identities=23%  Similarity=0.263  Sum_probs=245.4

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCC-CC-CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVY-PV-RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-----   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~-~~-~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-----   73 (314)
                      ++++|.|+|+++||+|||.++|||++|++.+.+.. .. ...+|.++|||++|+|+++|++|++|++||||++.+     
T Consensus        21 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~~~vGdrV~~~~~~~cg  100 (356)
T 1pl8_A           21 LENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRE  100 (356)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSS
T ss_pred             EEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCCCCCCCEEEEeccCCCC
Confidence            35788999999999999999999999999887532 11 125689999999999999999999999999999752     


Q ss_pred             ----------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           74 ----------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        74 ----------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                                            ...|+|+||++++++.++++|+++++++||++ .++.|||+++ +.+++++|++|||+
T Consensus       101 ~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~  178 (356)
T 1pl8_A          101 NDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVC  178 (356)
T ss_dssp             CCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEE
T ss_pred             CChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEE
Confidence                                  12699999999999999999999999999876 4788999999 55899999999999


Q ss_pred             CCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecC----hhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          132 GATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTES----QLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       132 g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~----~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      |+ |++|++++|+|+.+|+ +++++.    .++++++.++++|++++++++    .+..+.+++.++ . ++|++|||+|
T Consensus       179 Ga-G~vG~~aiqlak~~Ga~~Vi~~~----~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~-~-g~D~vid~~g  251 (356)
T 1pl8_A          179 GA-GPIGMVTLLVAKAMGAAQVVVTD----LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG-C-KPEVTIECTG  251 (356)
T ss_dssp             CC-SHHHHHHHHHHHHTTCSEEEEEE----SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT-S-CCSEEEECSC
T ss_pred             CC-CHHHHHHHHHHHHcCCCEEEEEC----CCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhC-C-CCCEEEECCC
Confidence            97 9999999999999999 676666    378889999999999999987    344567888776 4 4999999999


Q ss_pred             Cc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccc--
Q 021311          207 GN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY--  283 (314)
Q Consensus       207 ~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--  283 (314)
                      .+ .+..++++|+++|+++.+|.. ..+..++...++.+++++.|++..           .+.++++++++++|++++  
T Consensus       252 ~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~~~~~i~g~~~~-----------~~~~~~~~~l~~~g~i~~~~  319 (356)
T 1pl8_A          252 AEASIQAGIYATRSGGTLVLVGLG-SEMTTVPLLHAAIREVDIKGVFRY-----------CNTWPVAISMLASKSVNVKP  319 (356)
T ss_dssp             CHHHHHHHHHHSCTTCEEEECSCC-CSCCCCCHHHHHHTTCEEEECCSC-----------SSCHHHHHHHHHTTSCCCGG
T ss_pred             ChHHHHHHHHHhcCCCEEEEEecC-CCCCccCHHHHHhcceEEEEeccc-----------HHHHHHHHHHHHcCCCChHH
Confidence            86 468999999999999999953 334456666777899999987542           134788999999999764  


Q ss_pred             c-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          284 D-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       284 ~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      . ++.|+++++++||+.+.++ ..+ |+||++
T Consensus       320 ~i~~~~~l~~~~~A~~~~~~~-~~g-Kvvi~~  349 (356)
T 1pl8_A          320 LVTHRFPLEKALEAFETFKKG-LGL-KIMLKC  349 (356)
T ss_dssp             GEEEEEEGGGHHHHHHHHHTT-CCS-EEEEEC
T ss_pred             heEEEecHHHHHHHHHHHhCC-Cce-EEEEeC
Confidence            3 4689999999999999987 555 999975

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=5.6e-50  Score=351.99  Aligned_cols=289  Identities=20%  Similarity=0.256  Sum_probs=248.4

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--------
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--------   73 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------   73 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++||+|++.+        
T Consensus        32 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C  110 (366)
T 1yqd_A           32 FNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSC  110 (366)
T ss_dssp             EEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSS
T ss_pred             EEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEECCCCCcCCCCCEEEEcCCcCCCCCC
Confidence            567889999999999999999999999999887643 35799999999999999999999999999998521        


Q ss_pred             --------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCC-CCC
Q 021311           74 --------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLN-SGD  126 (314)
Q Consensus        74 --------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~  126 (314)
                                                ...|+|+||++++++.++++|+++++++||++++++.|||+++.+ .+++ +|+
T Consensus       111 ~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~~-~~~~~~g~  189 (366)
T 1yqd_A          111 ESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKY-FGLDEPGK  189 (366)
T ss_dssp             HHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHHH-TTCCCTTC
T ss_pred             hhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHHh-cCcCCCCC
Confidence                                      135999999999999999999999999999999999999999977 6788 999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|||+|+ |++|++++|+|+.+|++++++.+    ++++++.++ ++|+++++|+.+.  +.+++.++   ++|++|||+
T Consensus       190 ~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~----~~~~~~~~~~~lGa~~v~~~~~~--~~~~~~~~---~~D~vid~~  259 (366)
T 1yqd_A          190 HIGIVGL-GGLGHVAVKFAKAFGSKVTVIST----SPSKKEEALKNFGADSFLVSRDQ--EQMQAAAG---TLDGIIDTV  259 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CGGGHHHHHHTSCCSEEEETTCH--HHHHHTTT---CEEEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhcCCceEEeccCH--HHHHHhhC---CCCEEEECC
Confidence            9999997 99999999999999999888774    566777776 8999999998763  34555553   499999999


Q ss_pred             CCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc
Q 021311          206 GGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD  284 (314)
Q Consensus       206 g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  284 (314)
                      |.. .+..++++|+++|+++.+|.... +.+++...++.+++++.|++...          .+.++++++++++|++++.
T Consensus       260 g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~  328 (366)
T 1yqd_A          260 SAVHPLLPLFGLLKSHGKLILVGAPEK-PLELPAFSLIAGRKIVAGSGIGG----------MKETQEMIDFAAKHNITAD  328 (366)
T ss_dssp             SSCCCSHHHHHHEEEEEEEEECCCCSS-CEEECHHHHHTTTCEEEECCSCC----------HHHHHHHHHHHHHTTCCCC
T ss_pred             CcHHHHHHHHHHHhcCCEEEEEccCCC-CCCcCHHHHHhCCcEEEEecCCC----------HHHHHHHHHHHHcCCCCCc
Confidence            986 56899999999999999996543 34556666778999999876532          1457789999999999988


Q ss_pred             ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          285 MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       285 ~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.|+|+++++||+.+.+++..+ |+|+++
T Consensus       329 ~~~~~l~~~~~A~~~~~~~~~~g-Kvvl~~  357 (366)
T 1yqd_A          329 IEVISTDYLNTAMERLAKNDVRY-RFVIDV  357 (366)
T ss_dssp             EEEECGGGHHHHHHHHHTTCCSS-EEEECH
T ss_pred             eEEEcHHHHHHHHHHHHcCCcce-EEEEEc
Confidence            88999999999999999988777 999863

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=6.2e-50  Score=351.23  Aligned_cols=296  Identities=24%  Similarity=0.327  Sum_probs=252.1

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCC-CCCCCCEEeeCCCCCCccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT-RLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~~~~~g~~~   80 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|+ +|++||+|++..  .|+|+
T Consensus        44 ~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~~--~G~~a  121 (362)
T 2c0c_A           44 RDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMA--PGSFA  121 (362)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECTTGGGTCCTTCEEEEEC--SCCSB
T ss_pred             eecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECCCccCCCCCCCEEEEcc--CCcce
Confidence            578899999999999999999999999999987654346799999999999999999999 999999999986  69999


Q ss_pred             ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311           81 SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      ||++++++.++++|+. + .++|+++.+++|||+++.+.+++++|++|||+|++|++|++++|+|+..|++++++.+   
T Consensus       122 ey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---  196 (362)
T 2c0c_A          122 EYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---  196 (362)
T ss_dssp             SEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---
T ss_pred             eEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---
Confidence            9999999999999996 4 4667788899999999988889999999999998899999999999999999888873   


Q ss_pred             CcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC--c---
Q 021311          161 GSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP--I---  234 (314)
Q Consensus       161 ~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~--~---  234 (314)
                       ++++++.++++|+++++++++... +.+++.++ . ++|++|||+|...+..++++++++|+++.+|......  .   
T Consensus       197 -~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~-~-g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~  273 (362)
T 2c0c_A          197 -SDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYP-E-GVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLS  273 (362)
T ss_dssp             -SHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCT-T-CEEEEEECSCTHHHHHHHHHEEEEEEEEECCCGGGTTSSSCCC
T ss_pred             -CHHHHHHHHHcCCcEEEecCChhHHHHHHHhcC-C-CCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCCcCcccccc
Confidence             678889999999999999876544 55666553 3 4999999999987899999999999999999654321  0   


Q ss_pred             -----ccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc---------eeeccccHHHHHHHH
Q 021311          235 -----TVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM---------ELVPFNNFQTALSKA  300 (314)
Q Consensus       235 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~---------~~~~~~~~~~a~~~~  300 (314)
                           .+ ...++.+++++.|++...+.     ....+.++++++++++|++++.+         +.++++++++||+.+
T Consensus       274 ~~~~~~~-~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~  347 (362)
T 2c0c_A          274 PVKAGTL-PAKLLKKSASVQGFFLNHYL-----SKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYM  347 (362)
T ss_dssp             CCCCTTH-HHHHHHHTCEEEECCGGGCG-----GGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHH
T ss_pred             ccccccc-HHHHHhhcceEEEEEhhhhh-----hhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHH
Confidence                 12 24566789999998765432     12356789999999999998763         347999999999999


Q ss_pred             hccCCCCCceEeeC
Q 021311          301 LGLHGSQPKQVIKF  314 (314)
Q Consensus       301 ~~~~~~~~k~vi~~  314 (314)
                      .+++..| |+|+++
T Consensus       348 ~~~~~~g-Kvvv~~  360 (362)
T 2c0c_A          348 YMGKNTG-KIVVEL  360 (362)
T ss_dssp             HTTCCSB-EEEEEC
T ss_pred             HcCCCCc-eEEEEc
Confidence            9887777 999875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.4e-50  Score=351.34  Aligned_cols=299  Identities=20%  Similarity=0.206  Sum_probs=246.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-----CCC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-----PSS   76 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-----~~~   76 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++..+.+|.++|||++|+|+++  ++++|++||+|++..     ...
T Consensus        21 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~   98 (328)
T 1xa0_A           21 QTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRFREGDEVIATGYEIGVTHF   98 (328)
T ss_dssp             EEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSCCTTCEEEEESTTBTTTBC
T ss_pred             EeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCCCCCCEEEEccccCCCCCC
Confidence            5778899999999999999999999999998876544467999999999999995  578899999999753     126


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHH--hhcCCCCC-EEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED--FTTLNSGD-SIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~-~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                      |+|+||++++++.++++|+++++++||++++++.|||.++..  .+++++|+ +|||+|++|++|++++|+|+..|++++
T Consensus        99 G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi  178 (328)
T 1xa0_A           99 GGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVE  178 (328)
T ss_dssp             CSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred             ccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence            999999999999999999999999999999999999988753  36789986 999999999999999999999999988


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  233 (314)
                      ++++    ++++++.++++|+++++|+.+...+.+++.+++  ++|++|||+|++.+..++++++++|+++.+|...+..
T Consensus       179 ~~~~----~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~--~~d~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~  252 (328)
T 1xa0_A          179 ASTG----KAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQ--RWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAE  252 (328)
T ss_dssp             EEES----CTTCHHHHHHTTCSEEEECC---------CCSC--CEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSC
T ss_pred             EEEC----CHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCC--cccEEEECCcHHHHHHHHHhhccCCEEEEEeecCCCC
Confidence            8884    567788899999999999876432234444433  4999999999988899999999999999999665444


Q ss_pred             cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccceeeccccHHHHHHHHhccCCCCCceEee
Q 021311          234 ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVPFNNFQTALSKALGLHGSQPKQVIK  313 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~vi~  313 (314)
                      .+++...++.+++++.|++....    ......+.++.+.+++++| +++.++.|+++++++||+.+.+++..| |+|++
T Consensus       253 ~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~~~~~~~~~~~~~g-l~~~~~~~~l~~~~~A~~~~~~~~~~g-Kvvv~  326 (328)
T 1xa0_A          253 VPTTVHPFILRGVSLLGIDSVYC----PMDLRLRIWERLAGDLKPD-LERIAQEISLAELPQALKRILRGELRG-RTVVR  326 (328)
T ss_dssp             CCCCSHHHHHTTCEEEECCSSSC----CHHHHHHHHHHHHTTTCCC-HHHHEEEEEGGGHHHHHHHHHHTCCCS-EEEEE
T ss_pred             CCCchhhhhhcCceEEEEecccC----CHHHHHHHHHHHHHHHHcC-CceeeeEeCHHHHHHHHHHHHcCCCCC-eEEEE
Confidence            45555566789999998743211    2334456778888888888 777678899999999999999988777 99987


Q ss_pred             C
Q 021311          314 F  314 (314)
Q Consensus       314 ~  314 (314)
                      +
T Consensus       327 ~  327 (328)
T 1xa0_A          327 L  327 (328)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=8.6e-50  Score=350.99  Aligned_cols=292  Identities=22%  Similarity=0.246  Sum_probs=245.7

Q ss_pred             CccCCCC--------CCCCCcEEEEEEeecCChhhhhhhccCC-C-CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEe
Q 021311            1 MIELPPV--------EVKENDVCVKMLAAPINPSDINRIEGVY-P-VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVI   70 (314)
Q Consensus         1 i~~~~~p--------~~~~~eV~v~v~~~~i~~~D~~~~~~~~-~-~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~   70 (314)
                      ++++|.|        +|+++||+|||.++|||++|++++.+.. . ...++|.++|||++|+|+++|++|++|++||+|+
T Consensus        22 ~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~  101 (363)
T 3m6i_A           22 ISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVA  101 (363)
T ss_dssp             EEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEE
T ss_pred             EEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEEEEEECCCCCCCCCCCEEE
Confidence            3678999        9999999999999999999999887432 1 1236799999999999999999999999999999


Q ss_pred             eCC---------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCC
Q 021311           71 PSP---------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLN  123 (314)
Q Consensus        71 ~~~---------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~  123 (314)
                      +.+                           ...|+|+||++++++.++++|+ +++++||++. ++.|||+++ +.++++
T Consensus       102 ~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~  178 (363)
T 3m6i_A          102 IEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVR  178 (363)
T ss_dssp             ECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCC
T ss_pred             EecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCC
Confidence            752                           1379999999999999999999 9999999884 789999999 559999


Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecC------hhhHHHHHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTES------QLEVKNVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~------~~~~~~i~~~~~~~g  196 (314)
                      +|++|||+|+ |++|++++|+|+.+|++ ++++.    .++++++.++++ ++.++++.      ++..+.+++.+++.|
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~----~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g  252 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITD----IDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIE  252 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEE----SCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEC----CCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCC
Confidence            9999999998 99999999999999998 66655    378899999999 76666543      234577888888776


Q ss_pred             CCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHH
Q 021311          197 EPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCL  275 (314)
Q Consensus       197 ~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (314)
                       +|++|||+|++ .+..++++|+++|+++.+|... ....++...++.+++++.+++..           .+.++.++++
T Consensus       253 -~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~-----------~~~~~~~~~l  319 (363)
T 3m6i_A          253 -PAVALECTGVESSIAAAIWAVKFGGKVFVIGVGK-NEIQIPFMRASVREVDLQFQYRY-----------CNTWPRAIRL  319 (363)
T ss_dssp             -CSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCC-SCCCCCHHHHHHHTCEEEECCSC-----------SSCHHHHHHH
T ss_pred             -CCEEEECCCChHHHHHHHHHhcCCCEEEEEccCC-CCccccHHHHHhcCcEEEEccCC-----------HHHHHHHHHH
Confidence             99999999997 5699999999999999999543 33456666788899999987643           2457789999


Q ss_pred             HHcCCccc--cc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          276 AREGKLKY--DM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       276 l~~g~~~~--~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++|++++  .+ +.|+++++++||+.+.+++...+|+||++
T Consensus       320 ~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~  361 (363)
T 3m6i_A          320 VENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQS  361 (363)
T ss_dssp             HHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEEC
T ss_pred             HHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEec
Confidence            99999954  33 68999999999999999843334999874

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=3e-50  Score=355.19  Aligned_cols=301  Identities=20%  Similarity=0.288  Sum_probs=255.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCC----------------------------CCCCCCccCCcceEEE
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYP----------------------------VRPKVPAVGGYEGVGE   52 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~----------------------------~~~~~p~~~G~e~~G~   52 (314)
                      ++|+|.|+|+++||+|||.+++||++|++.+.|.++                            ....+|.++|||++|+
T Consensus        22 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~~~~~~~p~i~G~e~~G~  101 (379)
T 3iup_A           22 LDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGV  101 (379)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHHGGGTTEEEECCSCEEEE
T ss_pred             EEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccccccccCCCccceeeeEEE
Confidence            357889999999999999999999999999987521                            0124689999999999


Q ss_pred             EEEecCCC-CCCCCCCEEeeCCCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           53 VYSVGSAV-TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        53 V~~~G~~v-~~~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                      |+++|++| ++|++||+|++..  .|+|+||++++++.++++|+++++++||++++.++|||+++.. +. ++|++|||+
T Consensus       102 V~~vG~~v~~~~~vGdrV~~~~--~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~-~~-~~g~~vlV~  177 (379)
T 3iup_A          102 VVEAGSSPAAQALMGKTVAAIG--GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVET-MR-LEGHSALVH  177 (379)
T ss_dssp             EEEECSSHHHHTTTTCEEEECC--SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHH-HH-HTTCSCEEE
T ss_pred             EEEeCCCcccCCCCCCEEEecC--CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHH-hc-cCCCEEEEE
Confidence            99999999 8899999999987  6999999999999999999999999999999999999988766 55 899999999


Q ss_pred             C-CCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCcc
Q 021311          132 G-ATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNS  209 (314)
Q Consensus       132 g-~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~  209 (314)
                      | ++|++|++++|+|+.+|++++++..    ++++++.++++|+++++|+++.+ .+.+++.+++.+ +|++|||+|++.
T Consensus       178 gag~G~vG~~a~q~a~~~Ga~Vi~~~~----~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~g-~d~v~d~~g~~~  252 (379)
T 3iup_A          178 TAAASNLGQMLNQICLKDGIKLVNIVR----KQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTG-ATIAFDATGGGK  252 (379)
T ss_dssp             SSTTSHHHHHHHHHHHHHTCCEEEEES----SHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHHC-CCEEEESCEEES
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCCC-ceEEEECCCchh
Confidence            6 7799999999999999999988873    78999999999999999998754 477888888776 999999999865


Q ss_pred             H-HHHHHhcc-----cC-----------CEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHHHHHHH
Q 021311          210 A-SKVLKFLS-----QG-----------GTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYL  272 (314)
Q Consensus       210 ~-~~~~~~l~-----~~-----------G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (314)
                      . ..++++++     ++           |+++.+|.....  ..+....+.+++++.|+++..+....+++..++.++.+
T Consensus       253 ~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~--~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~  330 (379)
T 3iup_A          253 LGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTS--PTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRV  330 (379)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEE--EEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHH
T ss_pred             hHHHHHHhcchhhhccccceeecccccCceEEEecCCCCC--ccccccccccceEEEEEEeeeecccCCHHHHHHHHHHH
Confidence            5 77778875     44           566666543322  23334566789999999887775555677888889999


Q ss_pred             HHHHHcCCccccc-eeeccccH--HHHHHHHhccCCCCCceEeeC
Q 021311          273 LCLAREGKLKYDM-ELVPFNNF--QTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       273 ~~~l~~g~~~~~~-~~~~~~~~--~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++.+ .+++.+ +.|+|+++  ++||+.+.+++..| |+||++
T Consensus       331 ~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~g-KvVv~~  373 (379)
T 3iup_A          331 VAELKT-TFASHYSKEISLAEVLDLDMIAVYNKRATGE-KYLINP  373 (379)
T ss_dssp             HHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTTCCTTC-CEEEET
T ss_pred             HHHHhc-cCCCcceEEecHHHhhhHHHHHHHhcCCCCc-eEEEeC
Confidence            999988 477664 78999999  99999999998888 999975

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=9.7e-51  Score=352.64  Aligned_cols=300  Identities=20%  Similarity=0.208  Sum_probs=249.7

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----CC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----SS   76 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~~   76 (314)
                      +++|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++  ++++|++||+|++...     ..
T Consensus        22 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~~~   99 (330)
T 1tt7_A           22 KTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDPRFAEGDEVIATSYELGVSRD   99 (330)
T ss_dssp             EEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SSTTCCTTCEEEEESTTBTTTBC
T ss_pred             eecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCCCCCCCCEEEEcccccCCCCC
Confidence            5778899999999999999999999999998876544468999999999999996  5688999999997531     26


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHH--hhcCCCCC-EEEEcCCCcHHHHHHHHHHHHcCCcEE
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED--FTTLNSGD-SIVQNGATSIVGQCIIQIARHRGIHSI  153 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~-~vlI~g~~g~~G~~a~~la~~~g~~vi  153 (314)
                      |+|+||++++++.++++|+++++++||+++.++.|||.++..  .+++++|+ +|||+|++|++|++++|+|+..|++++
T Consensus       100 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi  179 (330)
T 1tt7_A          100 GGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVV  179 (330)
T ss_dssp             CSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEE
T ss_pred             ccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            999999999999999999999999999999999999988753  36789996 999999999999999999999999988


Q ss_pred             EEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCC
Q 021311          154 NIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKP  233 (314)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~  233 (314)
                      ++++    ++++++.++++|+++++|+++...+.+++.++ . ++|++|||+|++.+..++++++++|+++.+|...+..
T Consensus       180 ~~~~----~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~-~-~~d~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~  253 (330)
T 1tt7_A          180 ASTG----NREAADYLKQLGASEVISREDVYDGTLKALSK-Q-QWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGE  253 (330)
T ss_dssp             EEES----SSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCC-C-CEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSC
T ss_pred             EEeC----CHHHHHHHHHcCCcEEEECCCchHHHHHHhhc-C-CccEEEECCcHHHHHHHHHhhcCCCEEEEEecCCCCc
Confidence            8884    56677888999999999876432112333333 2 4999999999987899999999999999999765544


Q ss_pred             cccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEe
Q 021311          234 ITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVI  312 (314)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi  312 (314)
                      .+++...++.+++++.|++....    ......+.++.+.+++.+|++++.+ +.|+++++++||+.+.+++..| |+||
T Consensus       254 ~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvi  328 (330)
T 1tt7_A          254 VPATVYPFILRGVSLLGIDSVYC----PMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQG-RVIV  328 (330)
T ss_dssp             EEECSHHHHTSCCEEEECCSSSC----CHHHHHHHHHHTTTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTCCSS-EEEE
T ss_pred             cCcchHHHHhcCeEEEEEecccc----CHHHHHHHHHHHHHHHhcCCcccccceEEcHHHHHHHHHHHHcCCCCC-eEEE
Confidence            55555567789999998753211    2334556788888899999998775 7899999999999999888777 9998


Q ss_pred             eC
Q 021311          313 KF  314 (314)
Q Consensus       313 ~~  314 (314)
                      ++
T Consensus       329 ~~  330 (330)
T 1tt7_A          329 KL  330 (330)
T ss_dssp             CC
T ss_pred             eC
Confidence            75

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=2.3e-49  Score=352.04  Aligned_cols=291  Identities=19%  Similarity=0.139  Sum_probs=246.5

Q ss_pred             ccCCCCCC-CC-----CcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC--
Q 021311            2 IELPPVEV-KE-----NDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--   73 (314)
Q Consensus         2 ~~~~~p~~-~~-----~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--   73 (314)
                      +++|.|+| ++     +||+|||.++|||++|++++.|.++  ..+|.++|||++|+|+++|++|++|++||+|++.+  
T Consensus        17 ~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~--~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~   94 (398)
T 2dph_A           17 ETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI--VPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNV   94 (398)
T ss_dssp             EEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC--CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSBC
T ss_pred             EEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC--CCCCcccCCceEEEEEEECCCCCCCCCCCEEEEcCCC
Confidence            57888887 67     9999999999999999999998653  25799999999999999999999999999999632  


Q ss_pred             -----------------------------------CCCCcccceEeeecc--ceEEcCCCCCHHH----hhcccccHHHH
Q 021311           74 -----------------------------------PSSGTWQSYVVKDQS--VWHKVSKDSPMEY----AATIIVNPLTA  112 (314)
Q Consensus        74 -----------------------------------~~~g~~~~~~~~~~~--~~~~~p~~~~~~~----aa~~~~~~~ta  112 (314)
                                                         ...|+|+||++++++  .++++|+++++++    +|+++.+++||
T Consensus        95 ~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta  174 (398)
T 2dph_A           95 ACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTG  174 (398)
T ss_dssp             CCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHH
T ss_pred             CCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHHHH
Confidence                                               125899999999987  8999999999998    89999999999


Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh--HHHHH
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE--VKNVK  189 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~--~~~i~  189 (314)
                      |+++ +.+++++|++|||+|+ |++|++++|+|+.+|+ +++++..    ++++++.++++|++ ++++.+.+  .+.++
T Consensus       175 ~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~----~~~~~~~a~~lGa~-~i~~~~~~~~~~~~~  247 (398)
T 2dph_A          175 FHGC-VSAGVKPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQ----NPERLKLLSDAGFE-TIDLRNSAPLRDQID  247 (398)
T ss_dssp             HHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEES----CHHHHHHHHTTTCE-EEETTSSSCHHHHHH
T ss_pred             HHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC----CHHHHHHHHHcCCc-EEcCCCcchHHHHHH
Confidence            9999 4589999999999997 9999999999999999 6777663    78889999999996 88886543  57788


Q ss_pred             HHhcCCCCCcEEEecCCCc---------------cHHHHHHhcccCCEEEEEcCCC------------CCCcccccccce
Q 021311          190 GLLANLPEPALGFNCVGGN---------------SASKVLKFLSQGGTMVTYGGMS------------KKPITVSTSAFI  242 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~------------~~~~~~~~~~~~  242 (314)
                      +++++.+ +|++|||+|.+               .+..++++|+++|+++.+|...            .....++...++
T Consensus       248 ~~~~g~g-~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (398)
T 2dph_A          248 QILGKPE-VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMW  326 (398)
T ss_dssp             HHHSSSC-EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHH
T ss_pred             HHhCCCC-CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHh
Confidence            8888766 99999999986               3689999999999999999652            122344555677


Q ss_pred             ecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcc--cc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK--YD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .+++++.++....          .+.++++++++++|+++  +.   +++|+|+++++||+.+.+++. + |+||++
T Consensus       327 ~k~~~i~g~~~~~----------~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-g-Kvvv~~  391 (398)
T 2dph_A          327 TKSIRIMTGMAPV----------TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP-A-KFVIDP  391 (398)
T ss_dssp             HTTCEEECSSCCG----------GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTTCS-C-EEEECT
T ss_pred             hcCCEEEEeccCc----------HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcCCc-e-EEEEec
Confidence            8899988754321          24578899999999999  62   478999999999999998877 6 999875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=8.8e-49  Score=341.14  Aligned_cols=294  Identities=21%  Similarity=0.253  Sum_probs=252.0

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcc----eEEEEEEecCCCCCCCCCCEEeeCCCCC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYE----GVGEVYSVGSAVTRLAPGDWVIPSPPSS   76 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e----~~G~V~~~G~~v~~~~~Gd~V~~~~~~~   76 (314)
                      ++++|.|+|+++||+|||.+++||++|+..+.+....  .+|.++|||    ++|+|++  +++++|++||||++.    
T Consensus        28 ~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~~G~V~~--~~v~~~~vGdrV~~~----   99 (336)
T 4b7c_A           28 FVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALGVGKVLV--SKHPGFQAGDYVNGA----   99 (336)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEEEEEEEE--ECSTTCCTTCEEEEE----
T ss_pred             EEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc--CCCCCCCcccCCceEEEEEe--cCCCCCCCCCEEecc----
Confidence            3578899999999999999999999999888764332  457777777    7999999  458899999999975    


Q ss_pred             CcccceEeeeccceEEcCCCCCHHHh--hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEE
Q 021311           77 GTWQSYVVKDQSVWHKVSKDSPMEYA--ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN  154 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~  154 (314)
                      |+|+||++++++.++++|+++++.++  |+++.+++|||+++.+.+++++|++|||+|++|++|++++|+|+..|+++++
T Consensus       100 G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~  179 (336)
T 4b7c_A          100 LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVG  179 (336)
T ss_dssp             CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence            79999999999999999999977776  7888999999999988899999999999999999999999999999999888


Q ss_pred             EecCCCCcHHHHHHH-HhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCC-
Q 021311          155 IIRDRAGSDEAKEKL-KGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK-  231 (314)
Q Consensus       155 ~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~-  231 (314)
                      +.+    ++++.+.+ +++|+++++|+.+.. .+.+++.+++  ++|++|||+|.+.+..++++++++|+++.+|.... 
T Consensus       180 ~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~~~  253 (336)
T 4b7c_A          180 IAG----GAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPK--GIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQY  253 (336)
T ss_dssp             EES----SHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTT--CEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGG
T ss_pred             EeC----CHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCC--CceEEEECCCcchHHHHHHHHhhCCEEEEEeecccc
Confidence            874    68888888 899999999987654 4667777743  49999999999888999999999999999996542 


Q ss_pred             ---C--CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce-eeccccHHHHHHHHhccCC
Q 021311          232 ---K--PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME-LVPFNNFQTALSKALGLHG  305 (314)
Q Consensus       232 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~a~~~~~~~~~  305 (314)
                         .  ...++...++.+++++.+++...+.     ....+.++++++++++|++++... .++++++++||+.+.+++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~  328 (336)
T 4b7c_A          254 NNKEAVRGPANYLSLLVNRARMEGMVVMDYA-----QRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGEN  328 (336)
T ss_dssp             C------CCTTTTHHHHTTCEEEECCGGGGG-----GGHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCC
T ss_pred             cCCcccccchhHHHHHhCCcEEEEEEhhhhh-----hhhHHHHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHHcCCC
Confidence               1  1244556677899999998876542     225578899999999999998854 5899999999999999988


Q ss_pred             CCCceEeeC
Q 021311          306 SQPKQVIKF  314 (314)
Q Consensus       306 ~~~k~vi~~  314 (314)
                      .| |+||++
T Consensus       329 ~g-Kvvi~~  336 (336)
T 4b7c_A          329 FG-KLVLKV  336 (336)
T ss_dssp             CS-EEEEEC
T ss_pred             Cc-eEEEeC
Confidence            88 999985

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-48  Score=346.31  Aligned_cols=291  Identities=16%  Similarity=0.094  Sum_probs=243.0

Q ss_pred             ccCCCCCCC-CCc------EEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC-
Q 021311            2 IELPPVEVK-END------VCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP-   73 (314)
Q Consensus         2 ~~~~~p~~~-~~e------V~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-   73 (314)
                      +++|.|+|+ ++|      |+|||.++|||++|++++.|.++.  .+|.++|||++|+|+++|++|++|++||+|++.+ 
T Consensus        17 ~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~   94 (398)
T 1kol_A           17 QKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFN   94 (398)
T ss_dssp             EEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSE
T ss_pred             EEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCC--CCCcccCcccEEEEEEECCCCCcCCCCCEEEECCc
Confidence            578889986 888      999999999999999999986542  5689999999999999999999999999998521 


Q ss_pred             -----------------------------------CCCCcccceEeeecc--ceEEcCCCCCHHH----hhcccccHHHH
Q 021311           74 -----------------------------------PSSGTWQSYVVKDQS--VWHKVSKDSPMEY----AATIIVNPLTA  112 (314)
Q Consensus        74 -----------------------------------~~~g~~~~~~~~~~~--~~~~~p~~~~~~~----aa~~~~~~~ta  112 (314)
                                                         ...|+|+||++++++  +++++|+++++++    +|+++.++.||
T Consensus        95 ~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta  174 (398)
T 1kol_A           95 VACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTG  174 (398)
T ss_dssp             ECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHH
T ss_pred             CCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHHHH
Confidence                                               124899999999987  8999999999888    78888899999


Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChh--hHHHHH
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQL--EVKNVK  189 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~~~~i~  189 (314)
                      |+++. .+++++|++|||+|+ |++|++++|+|+.+|++ ++++.    .++++++.++++|++ ++++.+.  ..+.++
T Consensus       175 ~~al~-~~~~~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~----~~~~~~~~a~~lGa~-~i~~~~~~~~~~~v~  247 (398)
T 1kol_A          175 YHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGD----LNPARLAHAKAQGFE-IADLSLDTPLHEQIA  247 (398)
T ss_dssp             HHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEE----SCHHHHHHHHHTTCE-EEETTSSSCHHHHHH
T ss_pred             HHHHH-HcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEc----CCHHHHHHHHHcCCc-EEccCCcchHHHHHH
Confidence            99997 589999999999997 99999999999999995 55554    378899999999997 7887653  357788


Q ss_pred             HHhcCCCCCcEEEecCCCc----------------cHHHHHHhcccCCEEEEEcCC-CCC-----------Ccccccccc
Q 021311          190 GLLANLPEPALGFNCVGGN----------------SASKVLKFLSQGGTMVTYGGM-SKK-----------PITVSTSAF  241 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~----------------~~~~~~~~l~~~G~~v~~g~~-~~~-----------~~~~~~~~~  241 (314)
                      +++++.+ +|++|||+|.+                .+..++++++++|+++.+|.. .+.           ...++...+
T Consensus       248 ~~t~g~g-~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (398)
T 1kol_A          248 ALLGEPE-VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLG  326 (398)
T ss_dssp             HHHSSSC-EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHH
T ss_pred             HHhCCCC-CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHH
Confidence            8888766 99999999986                458999999999999999865 221           123444456


Q ss_pred             eecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcc---cc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          242 IFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLK---YD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~---~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +.+++++.+....          ..+.++++++++.+|+++   +. +++|+++++++||+.+.+++. + |+||++
T Consensus       327 ~~~~~~~~g~~~~----------~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~~-g-Kvvi~~  391 (398)
T 1kol_A          327 WAKSHSFHTGQTP----------VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP-K-KFVIDP  391 (398)
T ss_dssp             HHTTCEEEESSCC----------HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTCS-C-EEEECT
T ss_pred             hhcccEEEecccC----------hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCCc-e-EEEEEe
Confidence            6788888875321          235578899999999998   22 578999999999999998876 6 999975

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=1.3e-48  Score=347.77  Aligned_cols=291  Identities=19%  Similarity=0.230  Sum_probs=245.4

Q ss_pred             ccCCCCC-CCCCcEEEEEEeecCChhhhhhhccCC------CCCCCCCccCCcceEEEEEEecCCC------CCCCCCCE
Q 021311            2 IELPPVE-VKENDVCVKMLAAPINPSDINRIEGVY------PVRPKVPAVGGYEGVGEVYSVGSAV------TRLAPGDW   68 (314)
Q Consensus         2 ~~~~~p~-~~~~eV~v~v~~~~i~~~D~~~~~~~~------~~~~~~p~~~G~e~~G~V~~~G~~v------~~~~~Gd~   68 (314)
                      +++|.|+ |+++||+|||.++|||++|++.+.|..      +....+|.++|||++|+|+++|++|      ++|++||+
T Consensus        45 ~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdr  124 (404)
T 3ip1_A           45 EEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEP  124 (404)
T ss_dssp             EEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCE
T ss_pred             EEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCE
Confidence            5789999 999999999999999999999988642      2223679999999999999999999      88999999


Q ss_pred             EeeCC--------------------------CCCCcccceEeeeccceEEcCCCCC------HHHhhcccccHHHHHHHH
Q 021311           69 VIPSP--------------------------PSSGTWQSYVVKDQSVWHKVSKDSP------MEYAATIIVNPLTALRML  116 (314)
Q Consensus        69 V~~~~--------------------------~~~g~~~~~~~~~~~~~~~~p~~~~------~~~aa~~~~~~~ta~~~l  116 (314)
                      |++.+                          ...|+|+||++++++.++++|++++      +.++|+++.+++|||+++
T Consensus       125 V~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al  204 (404)
T 3ip1_A          125 VCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAV  204 (404)
T ss_dssp             EEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHH
T ss_pred             EEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHH
Confidence            99852                          1269999999999999999999885      566888888999999999


Q ss_pred             HHh-hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhc
Q 021311          117 EDF-TTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLA  193 (314)
Q Consensus       117 ~~~-~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~  193 (314)
                      ... +++++|++|||+|+ |++|++++|+|+.+|+ +++++.    .+++++++++++|+++++++++.+ .+.++++++
T Consensus       205 ~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~----~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~  279 (404)
T 3ip1_A          205 IVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSE----PSEVRRNLAKELGADHVIDPTKENFVEAVLDYTN  279 (404)
T ss_dssp             TTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEC----SCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTT
T ss_pred             HHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEC----CCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhC
Confidence            754 48999999999998 9999999999999999 555554    378999999999999999987654 477999998


Q ss_pred             CCCCCcEEEecCCCc--cHHHHHHhc----ccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhccccCHHHHHH
Q 021311          194 NLPEPALGFNCVGGN--SASKVLKFL----SQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRN  267 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~--~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (314)
                      +.| +|++|||+|++  .+..++++|    +++|+++.+|.... +.+++...++.+++++.|++....         .+
T Consensus       280 g~g-~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~---------~~  348 (404)
T 3ip1_A          280 GLG-AKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADA-KIPLTGEVFQVRRAQIVGSQGHSG---------HG  348 (404)
T ss_dssp             TCC-CSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCS-CEEECHHHHHHTTCEEEECCCCCS---------TT
T ss_pred             CCC-CCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCC-CCcccHHHHhccceEEEEecCCCc---------hH
Confidence            877 99999999998  456777777    99999999996544 446677778889999999864221         14


Q ss_pred             HHHHHHHHHHcCCcccc---ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          268 MIDYLLCLAREGKLKYD---MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       268 ~~~~~~~~l~~g~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++.+++++++| +++.   ++.|+|+++++||+.+.    .| |+|+++
T Consensus       349 ~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~G-Kvvl~~  392 (404)
T 3ip1_A          349 TFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ----TD-KSLVKV  392 (404)
T ss_dssp             HHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT----TC-TTCSCE
T ss_pred             HHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh----CC-cEEEec
Confidence            567899999999 7653   47899999999999997    44 888753

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1e-48  Score=372.40  Aligned_cols=289  Identities=23%  Similarity=0.276  Sum_probs=250.4

Q ss_pred             CCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccceEee
Q 021311            6 PVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVK   85 (314)
Q Consensus         6 ~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~~~~   85 (314)
                      .|+|+++||+|||.++|||++|+++..|.++.    |.++|||++|+|+++|++|++|++||+|+++.  .|+|++|+++
T Consensus       233 ~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~----~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~~--~G~~ae~~~v  306 (795)
T 3slk_A          233 TAPLGDGEVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGLAPGDRVMGMI--PKAFGPLAVA  306 (795)
T ss_dssp             HSCCCSSEEEEEEEEEEECHHHHHHTTTCCSS----CCCSCCCEEEEEEEECSSCCSSCTTCEEEECC--SSCSSSEEEE
T ss_pred             CCCCCCCEEEEEEEEEccCHHHHHHHcCCCCC----CccccceeEEEEEEeCCCCCcCCCCCEEEEEe--cCCCcCEEEe
Confidence            35689999999999999999999999987653    56899999999999999999999999999987  6999999999


Q ss_pred             eccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH
Q 021311           86 DQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA  165 (314)
Q Consensus        86 ~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~  165 (314)
                      +.+.++++|+++++++||++++.++|||+++.+.+++++|++|||+|++|++|++++|+|+..|+++++++.    + ++
T Consensus       307 ~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~----~-~k  381 (795)
T 3slk_A          307 DHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATAS----E-DK  381 (795)
T ss_dssp             ETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECC----G-GG
T ss_pred             ehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeC----h-HH
Confidence            999999999999999999999999999999988899999999999999999999999999999999998883    2 34


Q ss_pred             HHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceec
Q 021311          166 KEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK  244 (314)
Q Consensus       166 ~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  244 (314)
                      .+.++ +|+++++++++.+ .+.+++.++++| +|+||||+|++.+..++++++++|++|.+|....... .... ...+
T Consensus       382 ~~~l~-lga~~v~~~~~~~~~~~i~~~t~g~G-vDvVld~~gg~~~~~~l~~l~~~Gr~v~iG~~~~~~~-~~~~-~~~~  457 (795)
T 3slk_A          382 WQAVE-LSREHLASSRTCDFEQQFLGATGGRG-VDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRDP-VEVA-DAHP  457 (795)
T ss_dssp             GGGSC-SCGGGEECSSSSTHHHHHHHHSCSSC-CSEEEECCCTTTTHHHHTSCTTCEEEEECCSTTCCCH-HHHH-HHSS
T ss_pred             hhhhh-cChhheeecCChhHHHHHHHHcCCCC-eEEEEECCCcHHHHHHHHHhcCCCEEEEeccccccCc-cccc-ccCC
Confidence            44444 9999999988754 477999999887 9999999999989999999999999999995433211 1111 1236


Q ss_pred             ceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          245 DLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++++.++++..    ..+....+.++++++++++|++++. ++.|+++++++||+.|.+++..| |+||++
T Consensus       458 ~~~~~~~~l~~----~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~~~G-KvVl~~  523 (795)
T 3slk_A          458 GVSYQAFDTVE----AGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVG-KLVLTM  523 (795)
T ss_dssp             SEEEEECCGGG----GHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHHTCCCB-EEEEEC
T ss_pred             CCEEEEeeccc----cCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhcCCccc-eEEEec
Confidence            78877766532    2356677889999999999999986 56899999999999999999998 999974

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=7.1e-48  Score=338.05  Aligned_cols=295  Identities=21%  Similarity=0.246  Sum_probs=248.1

Q ss_pred             ccCCCCCC-CCCcEEEEEEeecCChhhhhhhcc----CCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCC
Q 021311            2 IELPPVEV-KENDVCVKMLAAPINPSDINRIEG----VYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSS   76 (314)
Q Consensus         2 ~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~----~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~   76 (314)
                      +++|.|+| +++||+|||.++|||++|++.+.+    .++....+|.++|||++|+|++  ++|++|++||+|++.   .
T Consensus        32 ~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~--~~v~~~~vGdrV~~~---~  106 (357)
T 2zb4_A           32 EEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEE--SKHTNLTKGDFVTSF---Y  106 (357)
T ss_dssp             EEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEEEEEEEE--ECSTTCCTTCEEEEE---E
T ss_pred             EeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccEEEEEEe--cCCCCCCCCCEEEec---C
Confidence            56788998 999999999999999999987765    2322235789999999999999  899999999999987   4


Q ss_pred             CcccceEeeeccceEEcCCCC-----CHHHhhcccccHHHHHHHHHHhhcCCCC--CEEEEcCCCcHHHHHHHHHHHHcC
Q 021311           77 GTWQSYVVKDQSVWHKVSKDS-----PMEYAATIIVNPLTALRMLEDFTTLNSG--DSIVQNGATSIVGQCIIQIARHRG  149 (314)
Q Consensus        77 g~~~~~~~~~~~~~~~~p~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~g~~g~~G~~a~~la~~~g  149 (314)
                      |+|+||++++++.++++|+++     +++ +|+++.+++|||+++.+.+++++|  ++|||+|++|++|++++|+++..|
T Consensus       107 G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~G  185 (357)
T 2zb4_A          107 WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLG  185 (357)
T ss_dssp             EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCC
Confidence            899999999999999999999     555 778888999999999877999999  999999999999999999999999


Q ss_pred             C-cEEEEecCCCCcHHHHHHHHh-CCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEE
Q 021311          150 I-HSINIIRDRAGSDEAKEKLKG-LGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       150 ~-~vi~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~  226 (314)
                      + +++++.+    ++++++.+++ +|+++++|+.+.. .+.+++.+.+ + +|++|||+|...+..++++++++|+++.+
T Consensus       186 a~~Vi~~~~----~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~-~d~vi~~~G~~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          186 CSRVVGICG----THEKCILLTSELGFDAAINYKKDNVAEQLRESCPA-G-VDVYFDNVGGNISDTVISQMNENSHIILC  259 (357)
T ss_dssp             CSEEEEEES----CHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTT-C-EEEEEESCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEEeC----CHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCC-C-CCEEEECCCHHHHHHHHHHhccCcEEEEE
Confidence            9 8887773    6777888876 9999999987644 4667777766 4 99999999987779999999999999999


Q ss_pred             cCCCCCCccccc---------ccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHH
Q 021311          227 GGMSKKPITVST---------SAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTA  296 (314)
Q Consensus       227 g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a  296 (314)
                      |........++.         ..++.+++++.+++...+     .....+.++++++++++|++++.. ..|+|+++++|
T Consensus       260 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A  334 (357)
T 2zb4_A          260 GQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNY-----KDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAA  334 (357)
T ss_dssp             CCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGG-----GGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHH
T ss_pred             CCccccccCccccccchhhhhhhhhcceeEEEEeehhhh-----hHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHH
Confidence            965432222221         356678999999876443     123457789999999999999874 46999999999


Q ss_pred             HHHHhccCCCCCceEeeC
Q 021311          297 LSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       297 ~~~~~~~~~~~~k~vi~~  314 (314)
                      |+.+.+++..| |+|+++
T Consensus       335 ~~~~~~~~~~g-Kvvi~~  351 (357)
T 2zb4_A          335 FQSMMTGGNIG-KQIVCI  351 (357)
T ss_dssp             HHHHHTTCCSB-EEEEEC
T ss_pred             HHHHHcCCCCc-eEEEEE
Confidence            99999988777 999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=4.1e-48  Score=331.94  Aligned_cols=281  Identities=23%  Similarity=0.311  Sum_probs=237.3

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||++|++++.|.++..+.+|.++|||++|+|+           ||+|++... .|+|+|
T Consensus        16 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------GdrV~~~~~-~G~~ae   83 (302)
T 1iz0_A           16 VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------GRRYAALVP-QGGLAE   83 (302)
T ss_dssp             EECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------TEEEEEECS-SCCSBS
T ss_pred             EECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------CcEEEEecC-Ccceee
Confidence            46788999999999999999999999999998766544689999999999998           999999864 599999


Q ss_pred             eEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC
Q 021311           82 YVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG  161 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~  161 (314)
                      |++++++.++++|+++++++||+++.+++|||+++.+.+ +++|++|||+|++|++|++++|+|+..|++++++.+    
T Consensus        84 y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~----  158 (302)
T 1iz0_A           84 RVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS----  158 (302)
T ss_dssp             EEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES----
T ss_pred             EEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----
Confidence            999999999999999999999999999999999998767 999999999999999999999999999999888874    


Q ss_pred             cHHHHHHHHhCCCcEEEecCh-hhH-HHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccc
Q 021311          162 SDEAKEKLKGLGADEVFTESQ-LEV-KNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS  239 (314)
Q Consensus       162 ~~~~~~~~~~lg~~~~~~~~~-~~~-~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  239 (314)
                      ++++++.++++|+++++|+++ ... +.+      . ++|++|| +|++.+..++++++++|+++.+|........++..
T Consensus       159 ~~~~~~~~~~~ga~~~~~~~~~~~~~~~~------~-~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  230 (302)
T 1iz0_A          159 RPEKLALPLALGAEEAATYAEVPERAKAW------G-GLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPL  230 (302)
T ss_dssp             SGGGSHHHHHTTCSEEEEGGGHHHHHHHT------T-SEEEEEE-CSCTTHHHHHTTEEEEEEEEEC-------CCCCTT
T ss_pred             CHHHHHHHHhcCCCEEEECCcchhHHHHh------c-CceEEEE-CCHHHHHHHHHhhccCCEEEEEeCCCCCCCCcCHH
Confidence            577788889999999998875 432 222      2 4999999 99988899999999999999999655433345556


Q ss_pred             cceecceEEEEEechhhccccCHHHHHHHHHHHHH---HHHcCCccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          240 AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC---LAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      .++.+++++.|+++..+      ....+.++++++   ++.+|++++.+ +.|+++++++||+.+.+++..| |+|+++
T Consensus       231 ~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvv~~  302 (302)
T 1iz0_A          231 RLMRRNLAVLGFWLTPL------LREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTG-KVVVRL  302 (302)
T ss_dssp             HHHHTTCEEEECCHHHH------TTCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHHHHHTTCTTCCB-EEEEEC
T ss_pred             HHHhCCCeEEEEeccch------hhhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHHHHHHHcCCCCc-eEEEeC
Confidence            67789999999876433      112356777888   99999998875 6899999999999999888777 999874

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=8.1e-48  Score=339.63  Aligned_cols=294  Identities=24%  Similarity=0.270  Sum_probs=238.3

Q ss_pred             ccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCC--------------CCCCCCccCCcceEEEEEEecCCCCCCCCC
Q 021311            2 IELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYP--------------VRPKVPAVGGYEGVGEVYSVGSAVTRLAPG   66 (314)
Q Consensus         2 ~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~--------------~~~~~p~~~G~e~~G~V~~~G~~v~~~~~G   66 (314)
                      +++|.|+| +++||+|||.++|||++|++++.|..+              ....+|.++|||++|+|+++|++|++|++|
T Consensus        40 ~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G~E~~G~V~~vG~~V~~~~vG  119 (375)
T 2vn8_A           40 QNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPG  119 (375)
T ss_dssp             EEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             ccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcccceeeeEEEEEeCCCCCCCCCC
Confidence            57788885 999999999999999999999887532              112379999999999999999999999999


Q ss_pred             CEEeeCCC--CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhc----CCCCCEEEEcCCCcHHHHH
Q 021311           67 DWVIPSPP--SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT----LNSGDSIVQNGATSIVGQC  140 (314)
Q Consensus        67 d~V~~~~~--~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~vlI~g~~g~~G~~  140 (314)
                      |+|++...  ..|+|+||++++++.++++|+++++++||+++.+++|||+++.+.++    +++|++|||+|++|++|++
T Consensus       120 DrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~  199 (375)
T 2vn8_A          120 DEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTF  199 (375)
T ss_dssp             CEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHH
T ss_pred             CEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHH
Confidence            99998652  25999999999999999999999999999999999999999987788    9999999999988999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCccH--HHHHHhc
Q 021311          141 IIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGNSA--SKVLKFL  217 (314)
Q Consensus       141 a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~~~--~~~~~~l  217 (314)
                      ++|+|+..|+++++++     ++++++.++++|+++++|+++... +++++.   . ++|++|||+|++..  ..+++++
T Consensus       200 ~~qla~~~Ga~Vi~~~-----~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~---~-g~D~vid~~g~~~~~~~~~~~~l  270 (375)
T 2vn8_A          200 AIQVMKAWDAHVTAVC-----SQDASELVRKLGADDVIDYKSGSVEEQLKSL---K-PFDFILDNVGGSTETWAPDFLKK  270 (375)
T ss_dssp             HHHHHHHTTCEEEEEE-----CGGGHHHHHHTTCSEEEETTSSCHHHHHHTS---C-CBSEEEESSCTTHHHHGGGGBCS
T ss_pred             HHHHHHhCCCEEEEEe-----ChHHHHHHHHcCCCEEEECCchHHHHHHhhc---C-CCCEEEECCCChhhhhHHHHHhh
Confidence            9999999999988776     356778889999999999876543 445432   2 49999999999843  7888999


Q ss_pred             ccCCEEEEEcCCCCCCcc---ccc------cccee-------cceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCc
Q 021311          218 SQGGTMVTYGGMSKKPIT---VST------SAFIF-------KDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKL  281 (314)
Q Consensus       218 ~~~G~~v~~g~~~~~~~~---~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  281 (314)
                      +++|+++.+|........   +..      ..++.       ++..+.+...    . .    ..+.++++++++++|++
T Consensus       271 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~-~----~~~~~~~~~~l~~~g~l  341 (375)
T 2vn8_A          271 WSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF----M-A----SGPCLDDIAELVDAGKI  341 (375)
T ss_dssp             SSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC----C-C----CHHHHHHHHHHHHTTSC
T ss_pred             cCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEe----C-C----CHHHHHHHHHHHHCCCc
Confidence            999999999854321110   100      01112       2333332211    0 0    13567899999999999


Q ss_pred             cccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          282 KYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       282 ~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ++.+ ++|+++++++||+.+.+++..| |+|+++
T Consensus       342 ~~~i~~~~~l~~~~~A~~~~~~~~~~g-Kvvi~~  374 (375)
T 2vn8_A          342 RPVIEQTFPFSKVPEAFLKVERGHARG-KTVINV  374 (375)
T ss_dssp             CCCEEEEEEGGGHHHHHHHHHHCCCSS-EEEEEC
T ss_pred             ccCcCeEECHHHHHHHHHHHHcCCCCC-eEEEEe
Confidence            9775 5899999999999999988777 999975

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=8.1e-49  Score=343.81  Aligned_cols=285  Identities=20%  Similarity=0.219  Sum_probs=239.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCC---CccCCcceEEEEEEecCCCCCCCCCCEEeeCC----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV---PAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP----   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~---p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~----   73 (314)
                      ++++|.|+|+++||+|||.++|||++|++++.|.++. ..+   |.++|||++| |+++|++ ++|++||+|++.+    
T Consensus        15 ~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~vG~~-~~~~vGdrV~~~~~~~~   91 (357)
T 2b5w_A           15 VIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVDPND-TELEEGDIVVPTVRRPP   91 (357)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEECTT-SSCCTTCEEEECSEECC
T ss_pred             EEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEECCC-CCCCCCCEEEECCcCCC
Confidence            3578999999999999999999999999999987653 256   8999999999 9999999 9999999999862    


Q ss_pred             ---------------------------CCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCC-
Q 021311           74 ---------------------------PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSG-  125 (314)
Q Consensus        74 ---------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-  125 (314)
                                                 ...|+|+||++++++.++++|++++ +. |+++.+++|||+++. .+++++| 
T Consensus        92 ~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~-aal~~~~~ta~~al~-~~~~~~g~  168 (357)
T 2b5w_A           92 ASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-EL-GFLIEPISITEKALE-HAYASRSA  168 (357)
T ss_dssp             TTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TT-GGGHHHHHHHHHHHH-HHHHTTTT
T ss_pred             CCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hh-hhhhchHHHHHHHHH-hcCCCCCc
Confidence                                       1158999999999999999999999 55 557779999999994 5899999 


Q ss_pred             -----CEEEEcCCCcHHHHHH-HHHH-HHcCCc-EEEEecCCCCcHH---HHHHHHhCCCcEEEecChhhHHHHHHHhcC
Q 021311          126 -----DSIVQNGATSIVGQCI-IQIA-RHRGIH-SINIIRDRAGSDE---AKEKLKGLGADEVFTESQLEVKNVKGLLAN  194 (314)
Q Consensus       126 -----~~vlI~g~~g~~G~~a-~~la-~~~g~~-vi~~~~~~~~~~~---~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~  194 (314)
                           ++|||+|+ |++|+++ +|+| +.+|++ ++++..    +++   +++.++++|++++ |+++.++.++++. ++
T Consensus       169 ~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~----~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~-~g  241 (357)
T 2b5w_A          169 FDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGR----RDRPDPTIDIIEELDATYV-DSRQTPVEDVPDV-YE  241 (357)
T ss_dssp             SCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEEC----CCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHH-SC
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeC----CcccHHHHHHHHHcCCccc-CCCccCHHHHHHh-CC
Confidence                 99999999 9999999 9999 999998 777774    455   7889999999999 8876544237776 55


Q ss_pred             CCCCcEEEecCCCc-cHHHHHHhcccCCEEEEEcCCCCCCcccccccc----eecceEEEEEechhhccccCHHHHHHHH
Q 021311          195 LPEPALGFNCVGGN-SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAF----IFKDLSLKGFWLQKWLSSEKATECRNMI  269 (314)
Q Consensus       195 ~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (314)
                       + +|++|||+|.+ .+..++++++++|+++.+|.....+.+++...+    +.+++++.|++...          .+.+
T Consensus       242 -g-~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~  309 (357)
T 2b5w_A          242 -Q-MDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSH----------VEHF  309 (357)
T ss_dssp             -C-EEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCC----------HHHH
T ss_pred             -C-CCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCC----------HHHH
Confidence             4 99999999986 568999999999999999966534445555566    78999999876532          3568


Q ss_pred             HHHHHHHHcC--C-ccccc-eeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          270 DYLLCLAREG--K-LKYDM-ELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       270 ~~~~~~l~~g--~-~~~~~-~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      +++++++++|  + +++.+ ++|+++++++||+.+   +..+ |+||++
T Consensus       310 ~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~---~~~g-Kvvi~~  354 (357)
T 2b5w_A          310 EAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD---DTTI-KTAIEF  354 (357)
T ss_dssp             HHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS---TTCC-EEEEEC
T ss_pred             HHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh---CCCc-eEEEEe
Confidence            8999999999  8 56654 689999999999988   3455 999975

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=3.7e-46  Score=327.97  Aligned_cols=286  Identities=14%  Similarity=0.165  Sum_probs=234.2

Q ss_pred             ccCCCCCCCC-CcEEEEEEeecCChhhhhhhcc--CCCCCCCC---CccCCcceEEEEEEecCCCCCCCCCCEEeeCC--
Q 021311            2 IELPPVEVKE-NDVCVKMLAAPINPSDINRIEG--VYPVRPKV---PAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP--   73 (314)
Q Consensus         2 ~~~~~p~~~~-~eV~v~v~~~~i~~~D~~~~~~--~~~~~~~~---p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--   73 (314)
                      +++|.|+|++ +||+|||.++|||++|++.+.|  .++. ..+   |.++|||++|+|++  ++ ++|++||+|++.+  
T Consensus        16 ~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~--~~-~~~~~GDrV~~~~~~   91 (366)
T 2cdc_A           16 KDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE--SY-HGFSQGDLVMPVNRR   91 (366)
T ss_dssp             EECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS--CC-SSCCTTCEEEECSEE
T ss_pred             EECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe--CC-CCCCCCCEEEEcCCC
Confidence            5788899999 9999999999999999999998  5542 245   89999999999999  77 8899999999742  


Q ss_pred             -------------------------C--CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHH--H--hhcC
Q 021311           74 -------------------------P--SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE--D--FTTL  122 (314)
Q Consensus        74 -------------------------~--~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~  122 (314)
                                               .  ..|+|+||++++++.++++|++++ ++|+ ++.++.|||+++.  +  .+++
T Consensus        92 ~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~  169 (366)
T 2cdc_A           92 GCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRV  169 (366)
T ss_dssp             CCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGS
T ss_pred             CCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCc
Confidence                                     1  259999999999999999999999 7765 6678999999998  4  5889


Q ss_pred             C--C-------CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcH---HHHHHHHhCCCcEEEecChhhHHHHHH
Q 021311          123 N--S-------GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD---EAKEKLKGLGADEVFTESQLEVKNVKG  190 (314)
Q Consensus       123 ~--~-------~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~---~~~~~~~~lg~~~~~~~~~~~~~~i~~  190 (314)
                      +  +       |++|||+|+ |++|++++|+|+..|++++++.+    ++   ++.+.++++|++++ | .+...+.+++
T Consensus       170 ~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~----~~~~~~~~~~~~~~ga~~v-~-~~~~~~~~~~  242 (366)
T 2cdc_A          170 PVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANR----REPTEVEQTVIEETKTNYY-N-SSNGYDKLKD  242 (366)
T ss_dssp             SCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEES----SCCCHHHHHHHHHHTCEEE-E-CTTCSHHHHH
T ss_pred             cccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeC----CccchHHHHHHHHhCCcee-c-hHHHHHHHHH
Confidence            8  8       999999999 99999999999999998888774    44   77888999999988 7 5533466776


Q ss_pred             HhcCCCCCcEEEecCCCc-cH-HHHHHhcccCCEEEEEcCCCCCCccccccc---ceecceEEEEEechhhccccCHHHH
Q 021311          191 LLANLPEPALGFNCVGGN-SA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSA---FIFKDLSLKGFWLQKWLSSEKATEC  265 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~-~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  265 (314)
                       +. . ++|++|||+|.. .+ +.++++|+++|+++.+|........++...   ++.+++++.|+....          
T Consensus       243 -~~-~-~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------  309 (366)
T 2cdc_A          243 -SV-G-KFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQ----------  309 (366)
T ss_dssp             -HH-C-CEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCCC----------
T ss_pred             -hC-C-CCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCCC----------
Confidence             55 3 499999999986 56 899999999999999996554334555555   778999999875421          


Q ss_pred             HHHHHHHHHHHHcCCc------cccc-eeeccccHHHHHHHH-hccCCCCCceEeeC
Q 021311          266 RNMIDYLLCLAREGKL------KYDM-ELVPFNNFQTALSKA-LGLHGSQPKQVIKF  314 (314)
Q Consensus       266 ~~~~~~~~~~l~~g~~------~~~~-~~~~~~~~~~a~~~~-~~~~~~~~k~vi~~  314 (314)
                      .+.++++++++++|++      ++.+ ++|+++++++||+.+ .+++..+ |+||++
T Consensus       310 ~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~g-Kvvi~~  365 (366)
T 2cdc_A          310 KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEI-KIRILW  365 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCC-EEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCce-EEEEec
Confidence            3567889999999994      4544 689999999999994 3355555 999975

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=1.3e-44  Score=314.55  Aligned_cols=291  Identities=23%  Similarity=0.293  Sum_probs=241.8

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccc
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQS   81 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~   81 (314)
                      +++|.|+|+++||+|||.++|||+.|... ..    ...+|.++|||++|+|++.  ++++|++||+|++.    |+|+|
T Consensus        29 ~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~----~~~~p~~~g~e~~G~Vv~~--~v~~~~vGdrV~~~----g~~ae   97 (333)
T 1v3u_A           29 KTVELPPLKNGEVLLEALFLSVDPYMRIA-SK----RLKEGAVMMGQQVARVVES--KNSAFPAGSIVLAQ----SGWTT   97 (333)
T ss_dssp             EEEECCCCCTTCEEEEEEEEECCTHHHHH-TT----TCCTTSBCCCCEEEEEEEE--SCTTSCTTCEEEEC----CCSBS
T ss_pred             EeCCCCCCCCCEEEEEEEEeccCHHHccc-cC----cCCCCcccccceEEEEEec--CCCCCCCCCEEEec----CceEE
Confidence            56788999999999999999999998732 11    1246789999999999994  67899999999986    79999


Q ss_pred             eEeeeccceEEcCCC----CCHHH-hhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311           82 YVVKDQSVWHKVSKD----SPMEY-AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus        82 ~~~~~~~~~~~~p~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      |++++++.++++|++    +++++ +|+++.+++|||+++.+.+++++|++|||+|++|++|++++++++..|++++++.
T Consensus        98 y~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~  177 (333)
T 1v3u_A           98 HFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAA  177 (333)
T ss_dssp             EEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEe
Confidence            999999999999997    88887 5888889999999998878999999999999999999999999999999988877


Q ss_pred             cCCCCcHHHHHHHHhCCCcEEEecCh-hh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC--
Q 021311          157 RDRAGSDEAKEKLKGLGADEVFTESQ-LE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK--  232 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~lg~~~~~~~~~-~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~--  232 (314)
                      +    ++++.+.++++|+++++|+.+ .. .+.+.+.+.+  ++|++|||+|.+.+..++++++++|+++.+|.....  
T Consensus       178 ~----~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~--~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~  251 (333)
T 1v3u_A          178 G----SDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPD--GYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNR  251 (333)
T ss_dssp             S----SHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTT--CEEEEEESSCHHHHHHHHTTEEEEEEEEECCCCC----
T ss_pred             C----CHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCC--CCeEEEECCChHHHHHHHHHHhcCCEEEEEeccccccC
Confidence            4    677888889999999998875 43 3556666653  599999999998789999999999999999965432  


Q ss_pred             ---Cc-ccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc-eeeccccHHHHHHHHhccCCCC
Q 021311          233 ---PI-TVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM-ELVPFNNFQTALSKALGLHGSQ  307 (314)
Q Consensus       233 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~~~~a~~~~~~~~~~~  307 (314)
                         +. ..+...++.+++++.|++...+    .+....+.++++++++++|++++.. ..++++++++||+.+.+++..|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~g  327 (333)
T 1v3u_A          252 MDQLPPGPSPESIIYKQLRIEGFIVYRW----QGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLG  327 (333)
T ss_dssp             ---CCBCCCHHHHHHTTCEEEECCGGGC----CTHHHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCSB
T ss_pred             CCCCCCCcCHHHHhhcCceEEEEehhhc----chHHHHHHHHHHHHHHHCCCccCccccccCHHHHHHHHHHHHcCCCCc
Confidence               11 1234457789999999866443    1245677899999999999999875 4589999999999999988777


Q ss_pred             CceEeeC
Q 021311          308 PKQVIKF  314 (314)
Q Consensus       308 ~k~vi~~  314 (314)
                       |+|+++
T Consensus       328 -Kvvl~~  333 (333)
T 1v3u_A          328 -KAVVTA  333 (333)
T ss_dssp             -EEEEEC
T ss_pred             -eEEEeC
Confidence             999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.1e-44  Score=316.45  Aligned_cols=294  Identities=20%  Similarity=0.217  Sum_probs=242.0

Q ss_pred             cCCCCC-CCCCcEEEEEEeecCChhhhhhhccCCCCC---CCCCccCCcceEEEEEE--ecCCCCCCCCCCEEeeCCCCC
Q 021311            3 ELPPVE-VKENDVCVKMLAAPINPSDINRIEGVYPVR---PKVPAVGGYEGVGEVYS--VGSAVTRLAPGDWVIPSPPSS   76 (314)
Q Consensus         3 ~~~~p~-~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~---~~~p~~~G~e~~G~V~~--~G~~v~~~~~Gd~V~~~~~~~   76 (314)
                      +++.|+ |+++||+|||.++|+|+.|. ...|.+...   ..+|.++|||++|++..  +|+++++|++||+|++.    
T Consensus        29 ~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV~~~v~~~~vGdrV~~~----  103 (345)
T 2j3h_A           29 TVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGI----  103 (345)
T ss_dssp             EEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEEEECSTTCCTTCEEEEE----
T ss_pred             ecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEEecCCCCCCCCCEEEee----
Confidence            667776 89999999999999888875 444543211   13689999999999999  99999999999999976    


Q ss_pred             CcccceEeeeccc--eEEcCC---CCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc
Q 021311           77 GTWQSYVVKDQSV--WHKVSK---DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH  151 (314)
Q Consensus        77 g~~~~~~~~~~~~--~~~~p~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~  151 (314)
                      |+|+||++++++.  ++++|+   +++++ +|+++.+++|||+++.+.+++++|++|||+|++|++|++++|+++..|++
T Consensus       104 g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~  182 (345)
T 2j3h_A          104 VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCY  182 (345)
T ss_dssp             EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            7899999999876  999996   35655 67888899999999988789999999999999999999999999999999


Q ss_pred             EEEEecCCCCcHHHHHHHH-hCCCcEEEecCh--hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcC
Q 021311          152 SINIIRDRAGSDEAKEKLK-GLGADEVFTESQ--LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       152 vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~--~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~  228 (314)
                      ++++.+    ++++++.++ ++|+++++|+.+  ...+.+++.++ . ++|++|||+|.+.+..++++++++|+++.+|.
T Consensus       183 V~~~~~----~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~-~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          183 VVGSAG----SKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFP-N-GIDIYFENVGGKMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEEES----SHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCT-T-CEEEEEESSCHHHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEEeC----CHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhC-C-CCcEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence            888773    678888887 799999998865  33456666664 3 49999999999777999999999999999986


Q ss_pred             CCCC-----CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccce-eeccccHHHHHHHHhc
Q 021311          229 MSKK-----PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME-LVPFNNFQTALSKALG  302 (314)
Q Consensus       229 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~a~~~~~~  302 (314)
                      ....     ...++...++.+++++.|++...+.     ....+.++++++++++|++++.++ .|+|+++++||+.+.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~  331 (345)
T 2j3h_A          257 ISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFY-----DKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFH  331 (345)
T ss_dssp             GGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGG-----GGHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHHT
T ss_pred             ccccccCCccccccHHHHhhhceeeceeeehhhh-----hhHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHHc
Confidence            5432     2344555677789999987654431     234567899999999999998776 6999999999999999


Q ss_pred             cCCCCCceEeeC
Q 021311          303 LHGSQPKQVIKF  314 (314)
Q Consensus       303 ~~~~~~k~vi~~  314 (314)
                      ++..| |+|+++
T Consensus       332 ~~~~g-Kvvv~~  342 (345)
T 2j3h_A          332 GKNVG-KQVVVV  342 (345)
T ss_dssp             TCCSS-EEEEES
T ss_pred             CCCce-EEEEEe
Confidence            88888 999875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=100.00  E-value=3.8e-37  Score=320.39  Aligned_cols=286  Identities=19%  Similarity=0.179  Sum_probs=241.4

Q ss_pred             CCcEEEEEEeecCChhhhhhhccCCCCC------CCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccceEe
Q 021311           11 ENDVCVKMLAAPINPSDINRIEGVYPVR------PKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVV   84 (314)
Q Consensus        11 ~~eV~v~v~~~~i~~~D~~~~~~~~~~~------~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~~~   84 (314)
                      ++||+|+|.++|+|+.|+.+..|.++..      ...|..+|+|++|+|.          +||+|+++.. .|+|++|++
T Consensus      1559 ~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV~g~~~-~G~~Aeyv~ 1627 (2512)
T 2vz8_A         1559 CQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRVMGMVP-AEGLATSVL 1627 (2512)
T ss_dssp             HHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCEEEECS-SCCSBSEEE
T ss_pred             CCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEEEEeec-CCceeeEEE
Confidence            7999999999999999999998876421      1246789999999873          7999999865 489999999


Q ss_pred             eeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHH
Q 021311           85 KDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE  164 (314)
Q Consensus        85 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~  164 (314)
                      ++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+|+..|+++++++.    +++
T Consensus      1628 vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~----s~~ 1703 (2512)
T 2vz8_A         1628 LLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVG----SAE 1703 (2512)
T ss_dssp             CCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHH
T ss_pred             cccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeC----Chh
Confidence            9999999999999999999999999999999988899999999999999999999999999999999998884    678


Q ss_pred             HHHHHHh----CCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccc
Q 021311          165 AKEKLKG----LGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS  239 (314)
Q Consensus       165 ~~~~~~~----lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  239 (314)
                      +++.+++    +|+++++++++.. .+.+++.+++.| +|+||||.+++.+..++++++++|+++.+|............
T Consensus      1704 k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~G-vDvVld~~g~~~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~ 1782 (2512)
T 2vz8_A         1704 KRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKG-VDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSNNHALGM 1782 (2512)
T ss_dssp             HHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCC-EEEEEECCCHHHHHHHHTTEEEEEEEEECCCHHHHTTCEEEG
T ss_pred             hhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCC-ceEEEECCCchHHHHHHHhcCCCcEEEEeecccccccCcccc
Confidence            8888875    8899999988654 477888888876 999999999888899999999999999998432111112234


Q ss_pred             cceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCcccc-ceeeccccHHHHHHHHhccCCCCCceEeeC
Q 021311          240 AFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYD-MELVPFNNFQTALSKALGLHGSQPKQVIKF  314 (314)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~k~vi~~  314 (314)
                      ..+.+++++.++++..+.. ..+..+.+.++.+.+++.+|.+++. +++|+++++++||+.+.+++..| |+|+++
T Consensus      1783 ~~~~~~~~~~g~~l~~~~~-~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~~g~~~G-KvVi~~ 1856 (2512)
T 2vz8_A         1783 AVFLKNVTFHGILLDSLFE-EGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIG-KVVIQV 1856 (2512)
T ss_dssp             GGGGGCCEEEECCGGGTTS-SCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHHHHHHHHHTTCCSS-EEEEEC
T ss_pred             cccccCCcEEEeeHHHHhh-hCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHHHHHHhhhccCccc-eEEEEC
Confidence            4667899999987755432 2345567777888888889999876 57899999999999999998887 999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.93  E-value=1.2e-24  Score=174.77  Aligned_cols=191  Identities=20%  Similarity=0.240  Sum_probs=142.4

Q ss_pred             cceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH
Q 021311           88 SVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE  167 (314)
Q Consensus        88 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~  167 (314)
                      +.++++|+++++++||+++.++.|||+++.+.+++++|++|||+|++|++|++++++++..|++++++.+    ++++.+
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~----~~~~~~   77 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG----SDAKRE   77 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES----SHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC----CHHHHH
Confidence            5688999999999999999999999999988789999999999999899999999999999999888774    677778


Q ss_pred             HHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCC-Ccccccccceecc
Q 021311          168 KLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKD  245 (314)
Q Consensus       168 ~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~  245 (314)
                      .++++|++.++|..+.. .+.+.+.+.+.+ +|+++||+|.+.+..++++|+++|+++.+|..... ..+++.. .+.++
T Consensus        78 ~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~-~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~  155 (198)
T 1pqw_A           78 MLSRLGVEYVGDSRSVDFADEILELTDGYG-VDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKS  155 (198)
T ss_dssp             HHHTTCCSEEEETTCSTHHHHHHHHTTTCC-EEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTT
T ss_pred             HHHHcCCCEEeeCCcHHHHHHHHHHhCCCC-CeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCC
Confidence            88889999888876543 466777666554 99999999987789999999999999999965421 2223322 34688


Q ss_pred             eEEEEEechhhccccCHHHHHHHHHHHHHHHHcCCccccc
Q 021311          246 LSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDM  285 (314)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  285 (314)
                      +++.++++ .+.....+....+.++++++++++|++++..
T Consensus       156 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  194 (198)
T 1pqw_A          156 ASFSVVDL-DLNLKLQPARYRQLLQHILQHVADGKLEVLP  194 (198)
T ss_dssp             CEEEECCH-HHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             cEEEEEeh-HHhhccCHHHHHHHHHHHHHHHHcCCccCCC
Confidence            88887655 2221113444567899999999999998753

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.04  E-value=2.4e-09  Score=93.16  Aligned_cols=145  Identities=15%  Similarity=0.128  Sum_probs=99.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE--EEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE--VFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +++|+|+|+ |++|+++++.++.+|++++++.+    ++++.+.++++++..  +++.+...   +.+...   ++|+++
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr----~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~DvVI  235 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDI----NVERLSYLETLFGSRVELLYSNSAE---IETAVA---EADLLI  235 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHGGGSEEEECCHHH---HHHHHH---TCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeC----CHHHHHHHHHhhCceeEeeeCCHHH---HHHHHc---CCCEEE
Confidence            489999999 99999999999999997666553    677777777665543  34444332   222222   399999


Q ss_pred             ecCCCcc-------HHHHHHhcccCCEEEEEcCCCCC------CcccccccceecceEEEEEec-hhhccc-cCHHHHHH
Q 021311          203 NCVGGNS-------ASKVLKFLSQGGTMVTYGGMSKK------PITVSTSAFIFKDLSLKGFWL-QKWLSS-EKATECRN  267 (314)
Q Consensus       203 d~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~  267 (314)
                      +|++.+.       ....++.|+++|+++.++...+.      +.+++...+..+++++.+... ...... ........
T Consensus       236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~  315 (361)
T 1pjc_A          236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNS  315 (361)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHH
T ss_pred             ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHH
Confidence            9998644       46788999999999999966543      334555567778899887542 111100 01111245


Q ss_pred             HHHHHHHHHHcCC
Q 021311          268 MIDYLLCLAREGK  280 (314)
Q Consensus       268 ~~~~~~~~l~~g~  280 (314)
                      .+..+++++.+|.
T Consensus       316 ~~~~l~~l~~~G~  328 (361)
T 1pjc_A          316 TLPYVVKLANQGL  328 (361)
T ss_dssp             HHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhCCc
Confidence            6788999998884

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.94  E-value=2.8e-11  Score=106.95  Aligned_cols=172  Identities=14%  Similarity=0.122  Sum_probs=122.9

Q ss_pred             ccCCcceEEEEEEecCCCCCCCCCCEEee--------CCCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHH
Q 021311           43 AVGGYEGVGEVYSVGSAVTRLAPGDWVIP--------SPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALR  114 (314)
Q Consensus        43 ~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~--------~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  114 (314)
                      ...|++.++.|.++|++++++.+|+.++.        ..+..|++++|+......++.+|++++.+.++. ..+..++|.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHH
Confidence            45788999999999999999999998721        111147788998888888999999988777654 346678888


Q ss_pred             HHHHhhc---CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcEEEecChhhHHHHHH
Q 021311          115 MLEDFTT---LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEVFTESQLEVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~---~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~~~~i~~  190 (314)
                      ++.....   -.+|++|+|+|+ |.+|.++++.++..|++.+.+++.   +.++. +.++++|++ +++..  .   +.+
T Consensus       154 av~~a~~~~~~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r---~~~ra~~la~~~g~~-~~~~~--~---l~~  223 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANR---TYERAVELARDLGGE-AVRFD--E---LVD  223 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECS---SHHHHHHHHHHHTCE-ECCGG--G---HHH
T ss_pred             HHHHHHHHhccccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeC---CHHHHHHHHHHcCCc-eecHH--h---HHH
Confidence            7754221   258999999999 999999999999999944444432   55554 567778875 33332  1   222


Q ss_pred             HhcCCCCCcEEEecCCCccH---HHHHHh--c--ccCCEEEEEcC
Q 021311          191 LLANLPEPALGFNCVGGNSA---SKVLKF--L--SQGGTMVTYGG  228 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~~---~~~~~~--l--~~~G~~v~~g~  228 (314)
                      ...   ++|+|++|++....   ...++.  +  ++++.++.++.
T Consensus       224 ~l~---~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdi  265 (404)
T 1gpj_A          224 HLA---RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI  265 (404)
T ss_dssp             HHH---TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred             Hhc---CCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEc
Confidence            232   39999999987542   355655  4  55777777764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.85  E-value=4.3e-08  Score=85.55  Aligned_cols=147  Identities=17%  Similarity=0.192  Sum_probs=90.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++++|+|+|+ |.+|+++++.++.+|++++++.+    ++++.+.+.+ +|.....+..+.  +.+.+...   ++|+++
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~----~~~~~~~~~~~~g~~~~~~~~~~--~~l~~~~~---~~DvVi  234 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDV----NHKRLQYLDDVFGGRVITLTATE--ANIKKSVQ---HADLLI  234 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHTTTSEEEEECCH--HHHHHHHH---HCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEEC----CHHHHHHHHHhcCceEEEecCCH--HHHHHHHh---CCCEEE
Confidence            3599999999 99999999999999998776663    5666666654 777643333221  12333333   399999


Q ss_pred             ecCCCcc-------HHHHHHhcccCCEEEEEcCCCCC------CcccccccceecceEEEEEech-hhc-cccCHHHHHH
Q 021311          203 NCVGGNS-------ASKVLKFLSQGGTMVTYGGMSKK------PITVSTSAFIFKDLSLKGFWLQ-KWL-SSEKATECRN  267 (314)
Q Consensus       203 d~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~  267 (314)
                      +|++.+.       ....++.|+++|.+|.++...+.      +.+++...+..+++++.+...- ... ..........
T Consensus       235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~  314 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQ  314 (369)
T ss_dssp             ECCC-------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHH
T ss_pred             ECCCCCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHH
Confidence            9998653       47888999999999999865443      2234444566788888775421 110 0000111245


Q ss_pred             HHHHHHHHHHcCC
Q 021311          268 MIDYLLCLAREGK  280 (314)
Q Consensus       268 ~~~~~~~~l~~g~  280 (314)
                      .++.+++++.+|.
T Consensus       315 ~~~~l~~l~~~g~  327 (369)
T 2eez_A          315 TLPYVLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCh
Confidence            5778888888774

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.82  E-value=4.9e-08  Score=85.31  Aligned_cols=143  Identities=17%  Similarity=0.147  Sum_probs=95.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCcEEEec-ChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEVFTE-SQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~~~~~-~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      ++++|+|+|+ |.+|+++++.++.+|++++++.+    +.++.+.+++ +|+....+. ....   +.+...   ++|+|
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~----~~~~l~~~~~~~g~~~~~~~~~~~~---l~~~l~---~aDvV  235 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDI----NIDKLRQLDAEFCGRIHTRYSSAYE---LEGAVK---RADLV  235 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHTTTSSEEEECCHHH---HHHHHH---HCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeC----CHHHHHHHHHhcCCeeEeccCCHHH---HHHHHc---CCCEE
Confidence            5799999999 99999999999999997766653    6777777765 777643332 2222   333333   39999


Q ss_pred             EecCCCcc-------HHHHHHhcccCCEEEEEcCCCC------CCcccccccceecceEEEEEechhhccccCHHH----
Q 021311          202 FNCVGGNS-------ASKVLKFLSQGGTMVTYGGMSK------KPITVSTSAFIFKDLSLKGFWLQKWLSSEKATE----  264 (314)
Q Consensus       202 ~d~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  264 (314)
                      ++|++.+.       ....++.|+++|.+|.++...+      .+.+++...+..+++++.+...-..   ..+..    
T Consensus       236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~---~~~~~as~~  312 (377)
T 2vhw_A          236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPA---SVPKTSTYA  312 (377)
T ss_dssp             EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGG---GSHHHHHHH
T ss_pred             EECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcch---hhHHHHHHH
Confidence            99997654       4788899999999999985443      3444455556678888766432111   11221    


Q ss_pred             -HHHHHHHHHHHHHcCC
Q 021311          265 -CRNMIDYLLCLAREGK  280 (314)
Q Consensus       265 -~~~~~~~~~~~l~~g~  280 (314)
                       ....++.+++++.+|.
T Consensus       313 ~~~~~~~~~~~l~~~g~  329 (377)
T 2vhw_A          313 LTNATMPYVLELADHGW  329 (377)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCh
Confidence             1334567777777763

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.78  E-value=2.2e-08  Score=87.83  Aligned_cols=122  Identities=11%  Similarity=0.174  Sum_probs=84.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecCh----------------h---
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQ----------------L---  183 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~----------------~---  183 (314)
                      ++++|+|+|+ |.+|++++++++.+|++++++. .   ++.+.+.++++|++.+ ++..+                .   
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d-~---~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~  245 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATD-V---RAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  245 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEC-S---CSTTHHHHHHTTCEECCC-----------------------C
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEe-C---CHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHh
Confidence            6899999998 9999999999999999855444 3   4556667777998755 22211                0   


Q ss_pred             -hHHHHHHHhcCCCCCcEEEecC---CCcc----HHHHHHhcccCCEEEEEcCCCCCCcc--cccccceecceEEEEEec
Q 021311          184 -EVKNVKGLLANLPEPALGFNCV---GGNS----ASKVLKFLSQGGTMVTYGGMSKKPIT--VSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       184 -~~~~i~~~~~~~g~~d~v~d~~---g~~~----~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~  253 (314)
                       ..+.+.+...   ++|+|++|+   |.+.    ....++.|++++.++.++...+..+.  .+...+..+++++.+...
T Consensus       246 ~~~~~l~~~~~---~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~  322 (384)
T 1l7d_A          246 KQAEAVLKELV---KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN  322 (384)
T ss_dssp             CHHHHHHHHHT---TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS
T ss_pred             hhHHHHHHHhC---CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC
Confidence             1122444443   399999999   5322    27888999999999999865443322  234456678899988643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.55  E-value=6.8e-07  Score=78.60  Aligned_cols=121  Identities=12%  Similarity=0.095  Sum_probs=82.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE-ec--------------Chhh----
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF-TE--------------SQLE----  184 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~-~~--------------~~~~----  184 (314)
                      ++++|+|+|+ |.+|++++++++.+|++++++. .   +.++.+.++++|+..+. +.              .+..    
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D-~---~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  245 (401)
T 1x13_A          171 PPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFD-T---RPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAE  245 (401)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEC-S---CGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEc-C---CHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHH
Confidence            5799999998 9999999999999999755544 2   56666777889987542 21              1110    


Q ss_pred             HHHHHHHhcCCCCCcEEEecCCCc-----c-H-HHHHHhcccCCEEEEEcCCCCCCccccc--c-cceecceEEEEEe
Q 021311          185 VKNVKGLLANLPEPALGFNCVGGN-----S-A-SKVLKFLSQGGTMVTYGGMSKKPITVST--S-AFIFKDLSLKGFW  252 (314)
Q Consensus       185 ~~~i~~~~~~~g~~d~v~d~~g~~-----~-~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~--~-~~~~~~~~~~~~~  252 (314)
                      .+.+.+...+   .|+|++|++.+     . + ...++.|++++.+|.++...+..+....  . .+..+++++.|..
T Consensus       246 ~~~l~e~~~~---aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          246 MELFAAQAKE---VDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHHHHHHH---CSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHHHHHhCC---CCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence            0124444443   99999995321     2 2 6889999999999999965444343322  2 2556889999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.42  E-value=1.7e-06  Score=74.64  Aligned_cols=121  Identities=10%  Similarity=0.117  Sum_probs=83.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEe---------cC----h----hhHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFT---------ES----Q----LEVK  186 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~---------~~----~----~~~~  186 (314)
                      ++.+|+|+|+ |.+|+.+++.++.+|++++++.+    +.++++.+.++|++.+.-         +.    +    ...+
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~----~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~  257 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDV----RPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ  257 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECS----SGGGHHHHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence            6799999999 99999999999999998766553    677778888888864320         00    0    0112


Q ss_pred             HHHHHhcCCCCCcEEEecCCCc-------cHHHHHHhcccCCEEEEEcCCCCCCcc--cccccceecceEEEEEe
Q 021311          187 NVKGLLANLPEPALGFNCVGGN-------SASKVLKFLSQGGTMVTYGGMSKKPIT--VSTSAFIFKDLSLKGFW  252 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~~  252 (314)
                      .+.+...   +.|+||.++..+       .....++.|++++.+|.++...+..+.  -+...+..+++++.+..
T Consensus       258 ~l~e~l~---~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~  329 (381)
T 3p2y_A          258 ALEDAIT---KFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPL  329 (381)
T ss_dssp             HHHHHHT---TCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCS
T ss_pred             HHHHHHh---cCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeC
Confidence            3444443   399999986332       137899999999999999866655443  22223445778877753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.38  E-value=4.3e-06  Score=74.91  Aligned_cols=154  Identities=14%  Similarity=0.112  Sum_probs=101.1

Q ss_pred             CCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccceEeeeccceEEcCCCCCHHHh--hcccccHHHHHHHHHH
Q 021311           41 VPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYA--ATIIVNPLTALRMLED  118 (314)
Q Consensus        41 ~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~~l~~  118 (314)
                      +|..+ +++.|+|+++|.+|+++.      .... .|.+......       ..+  +..+.  -.+.....++|+++.+
T Consensus       204 ~p~~~-~~i~GvveetgtGVd~l~------a~~~-~Gilv~~~~~-------vn~--sVae~~~r~l~~~~~s~~~g~~r  266 (494)
T 3ce6_A          204 WTKIA-ESVKGVTEETTTGVLRLY------QFAA-AGDLAFPAIN-------VND--SVTKSKFDNKYGTRHSLIDGINR  266 (494)
T ss_dssp             HHHHH-HHCCCEEECSHHHHHHHH------HHHH-TTCCCSCEEE-------CTT--SHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             chhhh-cCeEEEEEEeCCChhHHH------HHHH-cCCEEEecCC-------ccH--HHHHHHHhhhhhhhhhhhHHHHh
Confidence            34444 789999999999888761      0000 1222222111       111  11111  0112234566777655


Q ss_pred             hhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCC
Q 021311          119 FTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       119 ~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      ... ..+|++|+|+|. |.+|..+++.++.+|++++++..    ++.+.+.++++|++ +.+     .+++   ..   +
T Consensus       267 ~~~~~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~----~~~~~~~A~~~Ga~-~~~-----l~e~---l~---~  329 (494)
T 3ce6_A          267 GTDALIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEI----DPINALQAMMEGFD-VVT-----VEEA---IG---D  329 (494)
T ss_dssp             HHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTCE-ECC-----HHHH---GG---G
T ss_pred             ccCCCCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHcCCE-Eec-----HHHH---Hh---C
Confidence            332 789999999998 99999999999999997766652    67777788889985 221     1122   22   3


Q ss_pred             CcEEEecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          198 PALGFNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       198 ~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      .|+|++|++....  ...++.|+++|+++.+|.
T Consensus       330 aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          330 ADIVVTATGNKDIIMLEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             CSEEEECSSSSCSBCHHHHHHSCTTCEEEECSS
T ss_pred             CCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9999999998653  488999999999999984

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.35  E-value=4.4e-06  Score=72.72  Aligned_cols=121  Identities=17%  Similarity=0.128  Sum_probs=84.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEe-------------cCh----h---
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFT-------------ESQ----L---  183 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~-------------~~~----~---  183 (314)
                      ++.+|+|+|+ |.+|+.++++++.+|++|+++- .   +..+++.++++|++.+..             +..    .   
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D-~---~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~  263 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATD-V---RPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV  263 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEC-S---STTHHHHHHHTTCEECCCCC-----------------CHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEc-C---CHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhh
Confidence            5799999999 9999999999999999876554 2   667778888888764321             110    0   


Q ss_pred             -hHHHHHHHhcCCCCCcEEEecCCCc-------cHHHHHHhcccCCEEEEEcCCCCCCccc--ccccceecceEEEEEe
Q 021311          184 -EVKNVKGLLANLPEPALGFNCVGGN-------SASKVLKFLSQGGTMVTYGGMSKKPITV--STSAFIFKDLSLKGFW  252 (314)
Q Consensus       184 -~~~~i~~~~~~~g~~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g~~~~~~~~~--~~~~~~~~~~~~~~~~  252 (314)
                       ..+.+.+...+   .|+||.|+..+       .....++.|++++.+|.++...+..+..  +...+..+++++.+..
T Consensus       264 ~~~~~l~e~l~~---aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          264 KQAALVAEHIAK---QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHHHHHHHT---CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             hhHhHHHHHhcC---CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence             01234444443   99999996432       1378999999999999998655544332  2223456788888865

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.17  E-value=4.6e-06  Score=68.35  Aligned_cols=105  Identities=14%  Similarity=0.066  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCC--cEEEecCh
Q 021311          109 PLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGA--DEVFTESQ  182 (314)
Q Consensus       109 ~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~--~~~~~~~~  182 (314)
                      ...+.+.+ ....+.++++||..|+ | .|..+..+++. +.+++++- .   +++..+.+++    .+.  ...+...+
T Consensus        77 ~~~~~~~~-~~~~~~~~~~vldiG~-G-~G~~~~~l~~~-~~~v~~vD-~---~~~~~~~a~~~~~~~~~~~~~~~~~~d  148 (248)
T 2yvl_A           77 PKDSFYIA-LKLNLNKEKRVLEFGT-G-SGALLAVLSEV-AGEVWTFE-A---VEEFYKTAQKNLKKFNLGKNVKFFNVD  148 (248)
T ss_dssp             HHHHHHHH-HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEEC-S---CHHHHHHHHHHHHHTTCCTTEEEECSC
T ss_pred             chhHHHHH-HhcCCCCCCEEEEeCC-C-ccHHHHHHHHh-CCEEEEEe-c---CHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            33444444 4478899999999998 5 58888888888 66665554 2   6666666643    332  11111111


Q ss_pred             hhHHHHHHHh-cCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          183 LEVKNVKGLL-ANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 ~~~~~i~~~~-~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                           +.+.. .+. ++|+|+.+.+..  .+..+.+.|+++|+++...
T Consensus       149 -----~~~~~~~~~-~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          149 -----FKDAEVPEG-IFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             -----TTTSCCCTT-CBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             -----hhhcccCCC-cccEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence                 11112 222 499999887754  3488899999999999876

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.03  E-value=0.00012  Score=59.65  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +++++||+|++|.+|.++++.+...|++++++.+    +.++.+.+ .++.....+..+-.+.+.+.+.....+++|+++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSR----TQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEE
Confidence            4789999999999999999999889999988875    34443333 334323334333333445555544444699999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        82 ~~Ag~   86 (244)
T 3d3w_A           82 NNAAV   86 (244)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99984

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.02  E-value=5.5e-05  Score=62.07  Aligned_cols=107  Identities=17%  Similarity=0.160  Sum_probs=69.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .|+++||+|+++++|.+.++.+...|++|+++.+..+..++..+.+++.|.+...   |-.+ ..+++ +.+.....|++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            5899999999999999999999999999988765311112223344455655432   2222 23333 33344445579


Q ss_pred             cEEEecCCCc--------------------------cHHHHHHhc---ccCCEEEEEcCCC
Q 021311          199 ALGFNCVGGN--------------------------SASKVLKFL---SQGGTMVTYGGMS  230 (314)
Q Consensus       199 d~v~d~~g~~--------------------------~~~~~~~~l---~~~G~~v~~g~~~  230 (314)
                      |++++++|..                          ..+.+++.|   ..+|+||.+++..
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~  148 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT  148 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence            9999999852                          013455555   2468999998654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.00  E-value=7.7e-06  Score=61.12  Aligned_cols=106  Identities=8%  Similarity=0.072  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEEEecChhhHHH
Q 021311          109 PLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEVFTESQLEVKN  187 (314)
Q Consensus       109 ~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~~~~  187 (314)
                      .+.++.++.. +....+++|+|+|+ |.+|.++++.++..|++ +.+.+.   +.++.+ .++.++... ....+     
T Consensus         6 ~sv~~~a~~~-~~~~~~~~v~iiG~-G~iG~~~a~~l~~~g~~-v~v~~r---~~~~~~~~a~~~~~~~-~~~~~-----   73 (144)
T 3oj0_A            6 VSIPSIVYDI-VRKNGGNKILLVGN-GMLASEIAPYFSYPQYK-VTVAGR---NIDHVRAFAEKYEYEY-VLIND-----   73 (144)
T ss_dssp             CSHHHHHHHH-HHHHCCCEEEEECC-SHHHHHHGGGCCTTTCE-EEEEES---CHHHHHHHHHHHTCEE-EECSC-----
T ss_pred             ccHHHHHHHH-HHhccCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcC---CHHHHHHHHHHhCCce-EeecC-----
Confidence            4566667655 44445999999998 99999999988888998 444443   455543 456677432 22222     


Q ss_pred             HHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          188 VKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      +.+...   ++|+|++|++..........+++++.++.++.+
T Consensus        74 ~~~~~~---~~Divi~at~~~~~~~~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           74 IDSLIK---NNDVIITATSSKTPIVEERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             HHHHHH---TCSEEEECSCCSSCSBCGGGCCTTCEEEECCSS
T ss_pred             HHHHhc---CCCEEEEeCCCCCcEeeHHHcCCCCEEEEccCC
Confidence            112222   399999999976432222678889999888743

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.00  E-value=4.4e-05  Score=63.30  Aligned_cols=103  Identities=20%  Similarity=0.283  Sum_probs=70.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEV-F--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .|+.+||+|+++++|.+.++.+...|++|+++.+    ++++.+ .++++|.... +  |-.+ ..+++ +.+.....|+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r----~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGR----RKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999998875    444444 3456665432 2  2222 22233 2222233346


Q ss_pred             CcEEEecCCCc--------------------------cHHHHHHhcccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGN--------------------------SASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +|++++++|..                          ..+.+++.|+.+|++|.+++..
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~  162 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTA  162 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehh
Confidence            99999999852                          1145566788899999998654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.93  E-value=0.00029  Score=61.57  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             HHHHHHHHhhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHH
Q 021311          111 TALRMLEDFTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK  189 (314)
Q Consensus       111 ta~~~l~~~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~  189 (314)
                      ..+.++.+..+ .-.|++++|.|. |.+|..+++.++.+|++++++-.    ++.+...+...|... .     .   +.
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG~-G~IGk~vA~~Lra~Ga~Viv~D~----dp~ra~~A~~~G~~v-~-----~---Le  270 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCGY-GEVGKGCCAALKAMGSIVYVTEI----DPICALQACMDGFRL-V-----K---LN  270 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTCEE-C-----C---HH
T ss_pred             HHHHHHHHhhCceecCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEeC----ChhhhHHHHHcCCEe-c-----c---HH
Confidence            44566665443 458999999999 99999999999999999776552    455555555566432 1     1   22


Q ss_pred             HHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          190 GLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      +...   ..|+++.|.|....  ...++.|++++.++.+|.
T Consensus       271 eal~---~ADIVi~atgt~~lI~~e~l~~MK~gailINvgr  308 (435)
T 3gvp_A          271 EVIR---QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGH  308 (435)
T ss_dssp             HHTT---TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSS
T ss_pred             HHHh---cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecC
Confidence            2222   39999999886544  589999999999999983

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.93  E-value=0.00017  Score=59.32  Aligned_cols=106  Identities=14%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .|+.+||+|+++++|.+.++.+...|++++++.+... ..+..+.+.+.+.. ..+  |-.+ ..+++ +.+.....|++
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAP-DGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-CHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcc-cHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            5799999999999999999998899999998887643 23334444444433 222  2222 22222 22223333469


Q ss_pred             cEEEecCCCc-------------------------cHHHHHHhcc-cCCEEEEEcCCC
Q 021311          199 ALGFNCVGGN-------------------------SASKVLKFLS-QGGTMVTYGGMS  230 (314)
Q Consensus       199 d~v~d~~g~~-------------------------~~~~~~~~l~-~~G~~v~~g~~~  230 (314)
                      |++++++|..                         ....+++.|+ .+|++|.+++..
T Consensus        85 DiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  142 (258)
T 4gkb_A           85 DGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKT  142 (258)
T ss_dssp             CEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTH
T ss_pred             CEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehh
Confidence            9999999852                         0133445553 479999998643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.93  E-value=9.6e-05  Score=60.58  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=67.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .|+.+||+|+++++|.+.++.+...|++++++.+..+..++-.+.+++.|.....   |-.+ +.+++ +.+.....|++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999899999988775321112223344556655432   2222 22232 22222233469


Q ss_pred             cEEEecCCCc---------------------------cHHHHHHhcc--cCCEEEEEcCCC
Q 021311          199 ALGFNCVGGN---------------------------SASKVLKFLS--QGGTMVTYGGMS  230 (314)
Q Consensus       199 d~v~d~~g~~---------------------------~~~~~~~~l~--~~G~~v~~g~~~  230 (314)
                      |++++++|..                           ..+.+++.|.  .+|+||.+++..
T Consensus        86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~  146 (254)
T 4fn4_A           86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIA  146 (254)
T ss_dssp             CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechh
Confidence            9999999831                           0133455553  468999998654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.92  E-value=0.0002  Score=58.57  Aligned_cols=82  Identities=16%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEe-cChhhHHHHHHHhcCCCCCc
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFT-ESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~-~~~~~~~~i~~~~~~~g~~d  199 (314)
                      ..+++++||+|++|++|.++++.+...|++++++.+    +.++.+.+ +.+.....+. .+-.+.+.+.+.....+++|
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGS----NEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            457899999999999999999988899999998885    44444333 3444333332 22223344555444444699


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        87 ~li~~Ag~   94 (249)
T 3f9i_A           87 ILVCNAGI   94 (249)
T ss_dssp             EEEECCC-
T ss_pred             EEEECCCC
Confidence            99999984

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.92  E-value=0.00014  Score=59.33  Aligned_cols=102  Identities=13%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEEecC--h-hhHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVFTES--Q-LEVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~--~-~~~~~-i~~~~~~~g~~d  199 (314)
                      +++|||+|+++++|.+.++.+...|++|+++.+    ++++.+.+.+-+.. ..+..+  + ..+++ +.+.....|++|
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iD   77 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDI----DEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRID   77 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999999999988774    45555555443333 233222  2 22222 222222334699


Q ss_pred             EEEecCCCc-----------c---------------HHHHHHhc-ccCCEEEEEcCCC
Q 021311          200 LGFNCVGGN-----------S---------------ASKVLKFL-SQGGTMVTYGGMS  230 (314)
Q Consensus       200 ~v~d~~g~~-----------~---------------~~~~~~~l-~~~G~~v~~g~~~  230 (314)
                      ++++++|..           .               .+.+++.| +.+|++|.+++..
T Consensus        78 iLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~  135 (247)
T 3ged_A           78 VLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTR  135 (247)
T ss_dssp             EEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecc
Confidence            999999842           0               12334444 4679999998654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.91  E-value=0.00018  Score=59.84  Aligned_cols=84  Identities=11%  Similarity=0.104  Sum_probs=55.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecChh-hHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQL-EVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~~-~~~~i~~~~~~~g~~d  199 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....++..+.+...+.... +  |-.+. ..+.+.+.....+++|
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD  111 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVD  111 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCC
Confidence            579999999999999999999989999999888765444444555555554432 2  22221 2222222111113599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus       112 ~lvnnAg~  119 (275)
T 4imr_A          112 ILVINASA  119 (275)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999994

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.88  E-value=9.2e-05  Score=62.38  Aligned_cols=107  Identities=17%  Similarity=0.141  Sum_probs=64.9

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC--h-hhHHHH-HHHhcCCCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES--Q-LEVKNV-KGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~--~-~~~~~i-~~~~~~~g~  197 (314)
                      .++++||+|++|  ++|.++++.+...|++++++.+.....+...+.....+....+..+  + ..++++ .+.....|+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS  108 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999986  9999999988889999988876422111122233444544444332  2 122222 222222235


Q ss_pred             CcEEEecCCCcc------------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGNS------------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +|++++++|...                              ...++..|+.+|++|.+++..
T Consensus       109 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~  171 (296)
T 3k31_A          109 LDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYG  171 (296)
T ss_dssp             CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             CCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehh
Confidence            999999998421                              022334556689999998543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.87  E-value=0.00023  Score=50.69  Aligned_cols=94  Identities=13%  Similarity=0.015  Sum_probs=61.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .+.+|+|+|+ |.+|..+++.+...| .+++++.+    ++++.+.+...+..... .+-...+.+.+...   ++|+||
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r----~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~---~~d~vi   74 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADH----DLAALAVLNRMGVATKQ-VDAKDEAGLAKALG---GFDAVI   74 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEES----CHHHHHHHHTTTCEEEE-CCTTCHHHHHHHTT---TCSEEE
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeC----CHHHHHHHHhCCCcEEE-ecCCCHHHHHHHHc---CCCEEE
Confidence            3578999999 999999999999999 66666653    56666666656654322 22222334555443   399999


Q ss_pred             ecCCCccHHHHHH-hcccCCEEEEE
Q 021311          203 NCVGGNSASKVLK-FLSQGGTMVTY  226 (314)
Q Consensus       203 d~~g~~~~~~~~~-~l~~~G~~v~~  226 (314)
                      +|++........+ +.+.+.+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           75 SAAPFFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEECC
T ss_pred             ECCCchhhHHHHHHHHHhCCCEEEe
Confidence            9998765544444 44555555544

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.86  E-value=0.00011  Score=60.40  Aligned_cols=107  Identities=13%  Similarity=0.193  Sum_probs=65.9

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc--EEE--ecCh-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD--EVF--TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~--~~~~-~~~~~-i~~~~~~~  195 (314)
                      .|+++||+|++|  ++|.+.++.+...|++|+++.+.....++-.+.+++++..  ..+  |-.+ ..+++ +.+.....
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            579999999865  8999999999999999998886432223333344555532  222  3222 22222 22222223


Q ss_pred             CCCcEEEecCCCcc---------------H---------------HHHHHhcccCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNS---------------A---------------SKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~---------------~---------------~~~~~~l~~~G~~v~~g~~~  230 (314)
                      |++|++++++|...               +               ......++.+|+||.+++..
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~  149 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLG  149 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGG
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            46999999988410               0               12234567789999998654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.85  E-value=0.00024  Score=58.88  Aligned_cols=104  Identities=18%  Similarity=0.284  Sum_probs=67.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   +.+..    +.++..+.... +  |-.+ ..+++ +.+....
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN---STKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999887653   23322    33344554432 2  2222 12222 2222222


Q ss_pred             CCCCcEEEecCCCcc--------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          195 LPEPALGFNCVGGNS--------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .|++|++++++|...                          ...+++.|+++|++|.+++..
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            235999999998520                          134556777899999998654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.84  E-value=0.00016  Score=58.78  Aligned_cols=81  Identities=17%  Similarity=0.116  Sum_probs=56.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE-ecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|+++||+|+++++|.+.++.+...|++|+++.+..  .++..+.+++.|..... ..+-.+.+.++.... .|++|+++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~--~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~-~g~iDiLV   84 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRA--PDETLDIIAKDGGNASALLIDFADPLAAKDSFT-DAGFDILV   84 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC--CHHHHHHHHHTTCCEEEEECCTTSTTTTTTSST-TTCCCEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc--HHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH-hCCCCEEE
Confidence            589999999999999999999999999998887642  35566677777765432 222111222333222 24699999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        85 NNAGi   89 (247)
T 4hp8_A           85 NNAGI   89 (247)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99985

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.84  E-value=0.0001  Score=61.03  Aligned_cols=84  Identities=14%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC--CCc-EEEecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL--GAD-EVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~-~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .++++||+|+++++|.+.++.+...|++++++.+.....++..+.+...  +.. ..+..+-.+.+.+.+.....+++|+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            4789999999999999999988899999998885311111112222222  222 1222222223334444433446999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +++++|.
T Consensus        89 lv~nAg~   95 (267)
T 3t4x_A           89 LINNLGI   95 (267)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.82  E-value=6.5e-05  Score=60.98  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EEecChhhHHHHHHHhcCCCCCcEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      =.|+++||+|+++++|.+.++.+...|++|+++.+..    ++.+.  ..+... .+..+-.+.+.+++.....|++|++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~----~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDA----DGVHA--PRHPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST----TSTTS--CCCTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH----HHHhh--hhcCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            3689999999999999999999999999999887542    22111  112221 1222212233444444444579999


Q ss_pred             EecCCCcc------------------------HHHHHHhcc-cCCEEEEEcCCC
Q 021311          202 FNCVGGNS------------------------ASKVLKFLS-QGGTMVTYGGMS  230 (314)
Q Consensus       202 ~d~~g~~~------------------------~~~~~~~l~-~~G~~v~~g~~~  230 (314)
                      ++++|...                        .+.+++.|+ .+|+||.+++..
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  136 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMY  136 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGG
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            99998520                        133455554 579999998654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.81  E-value=0.0001  Score=62.00  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=64.9

Q ss_pred             CCCCEEEEcCCCcH--HHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcEEEecC--h-hhHHH-HHHHhcCC
Q 021311          123 NSGDSIVQNGATSI--VGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEVFTES--Q-LEVKN-VKGLLANL  195 (314)
Q Consensus       123 ~~~~~vlI~g~~g~--~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~~~~~~--~-~~~~~-i~~~~~~~  195 (314)
                      -.++++||+|++|.  +|.++++.+...|++++++.+... ..+.. +.....+....+..+  + ..+++ +.+.....
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA-LKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH-HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999865  999999998899999988875311 11111 222334433333222  2 12222 22222223


Q ss_pred             CCCcEEEecCCCcc------------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNS------------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      |++|++++++|...                              ...+++.|+.+|++|.+++..
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~  172 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYG  172 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehh
Confidence            45999999998421                              123445667789999998643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.77  E-value=0.00022  Score=59.97  Aligned_cols=92  Identities=14%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      -.|++|+|+|. |.+|.++++.++.+|++++++.+    +.++.+.+.++|... ++..     .+.+...   +.|+|+
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr----~~~~~~~~~~~g~~~-~~~~-----~l~~~l~---~aDvVi  218 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGAKVKVGAR----ESDLLARIAEMGMEP-FHIS-----KAAQELR---DVDVCI  218 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHTTSEE-EEGG-----GHHHHTT---TCSEEE
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEEC----CHHHHHHHHHCCCee-cChh-----hHHHHhc---CCCEEE
Confidence            46899999998 99999999999999998776663    555555566777653 2221     1222222   399999


Q ss_pred             ecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          203 NCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       203 d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      .++..... ...++.|++++.++.++.
T Consensus       219 ~~~p~~~i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          219 NTIPALVVTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             ECCSSCCBCHHHHHHSCTTCEEEECSS
T ss_pred             ECCChHHhCHHHHHhcCCCCEEEEecC
Confidence            99987554 567889999999999984

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.76  E-value=0.00015  Score=60.06  Aligned_cols=85  Identities=12%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             CCCCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecC--hh-hHHH-HHHHhcC
Q 021311          122 LNSGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTES--QL-EVKN-VKGLLAN  194 (314)
Q Consensus       122 ~~~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~--~~-~~~~-i~~~~~~  194 (314)
                      ...++++||+|++  +++|.++++.+...|++++++.+.. ...+..+.+ ...+....+..+  +. .++. +.+....
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD-RFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG-GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch-hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            4578999999998  9999999998888999998887642 223333333 445543333332  21 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        90 ~g~id~lv~nAg~  102 (271)
T 3ek2_A           90 WDSLDGLVHSIGF  102 (271)
T ss_dssp             CSCEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            3469999999984

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.76  E-value=0.0002  Score=57.99  Aligned_cols=99  Identities=14%  Similarity=0.254  Sum_probs=64.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+++|||+|++|.+|..+++.+...|.+++++.+    ++++.+.+...+...++..+-.  +.+.+...   ++|+||.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R----~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~---~~D~vi~   90 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR----NEEQGPELRERGASDIVVANLE--EDFSHAFA---SIDAVVF   90 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----SGGGHHHHHHTTCSEEEECCTT--SCCGGGGT---TCSEEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC----ChHHHHHHHhCCCceEEEcccH--HHHHHHHc---CCCEEEE
Confidence            4689999999999999999999889999999986    3444455555555122322211  23333333   4999999


Q ss_pred             cCCCcc--------------HHHHHHhccc--CCEEEEEcCCCC
Q 021311          204 CVGGNS--------------ASKVLKFLSQ--GGTMVTYGGMSK  231 (314)
Q Consensus       204 ~~g~~~--------------~~~~~~~l~~--~G~~v~~g~~~~  231 (314)
                      ++|...              ...+++.++.  .+++|.+++...
T Consensus        91 ~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           91 AAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             CCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            998632              1234444432  379999886543

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.74  E-value=0.00029  Score=56.42  Aligned_cols=98  Identities=12%  Similarity=-0.001  Sum_probs=64.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHH-HcCCcEEEEecCCCCcHH-HHHHHHhCCC-cEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIAR-HRGIHSINIIRDRAGSDE-AKEKLKGLGA-DEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~-~~g~~vi~~~~~~~~~~~-~~~~~~~lg~-~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++|||+|++|.+|..+++.+. ..|++++++.+    +++ +.+.+...+. ...+..+-.+.+.+.+...   ++|++|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---~~d~vv   78 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGR----QLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT---NAEVVF   78 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEES----SHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT---TCSEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEec----CccccchhhccCCCceEEEECCCCCHHHHHHHHc---CCCEEE
Confidence            569999999999999998887 89999998885    444 4333321222 2333333333445555554   399999


Q ss_pred             ecCCCcc--HHHHHHhcccC--CEEEEEcCCC
Q 021311          203 NCVGGNS--ASKVLKFLSQG--GTMVTYGGMS  230 (314)
Q Consensus       203 d~~g~~~--~~~~~~~l~~~--G~~v~~g~~~  230 (314)
                      +++|...  ...+++.++..  +++|.+++..
T Consensus        79 ~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           79 VGAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             ESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            9999743  34555555433  5899888654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.74  E-value=0.00023  Score=59.13  Aligned_cols=103  Identities=16%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.+.++.+...|++++++.+.   ..++.    +.++..+.... +  |-.+ ..+++ +.+....
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN---AAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999988999999888653   22322    23344454432 2  2222 12222 2222222


Q ss_pred             CCCCcEEEecCCCc--------------------------cHHHHHHhcccCCEEEEEcCC
Q 021311          195 LPEPALGFNCVGGN--------------------------SASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       195 ~g~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      .|++|++++++|..                          ....+++.|+.+|++|.+++.
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            23599999999841                          013345667778999999753

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.74  E-value=0.00047  Score=57.53  Aligned_cols=104  Identities=19%  Similarity=0.247  Sum_probs=65.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH----HHHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA----KEKLKGLGADEV-F--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~----~~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.   .+..    .+.++..+.... +  |-.+ ..++. +.+....
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN---STESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999998999999988764   2221    223344554432 2  2222 12222 2222111


Q ss_pred             CCCCcEEEecCCCcc--------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          195 LPEPALGFNCVGGNS--------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .|++|++++++|...                          .+.+++.|+.+|++|.+++..
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  166 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  166 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechh
Confidence            235999999998421                          123445566679999998643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.73  E-value=0.00024  Score=58.68  Aligned_cols=107  Identities=14%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             CCCEEEEcCCCcH--HHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC--cEEE--ecCh-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSI--VGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA--DEVF--TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~--~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~~~--~~~~-~~~~~-i~~~~~~~  195 (314)
                      .++++||+|++|.  +|.++++.+...|++++++.+.....+...+...+.+.  ...+  |-.+ ..+++ +.+.....
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            4789999999955  99999988888999998887542111222233344443  1222  2222 22222 22222222


Q ss_pred             CCCcEEEecCCCcc------------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNS------------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +++|++++++|...                              ...++..|+++|++|.+++..
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  150 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLG  150 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence            35999999998421                              022344566789999998643

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.73  E-value=0.00048  Score=56.16  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEE-EecChh-hHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEV-FTESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~-~~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+. ..+++...+ .|-.+. .+++ +.+.....|++|
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id   79 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDI----EEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLD   79 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999998889999998875    3444433 344553222 232221 2222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        80 ~lvn~Ag~   87 (245)
T 1uls_A           80 GVVHYAGI   87 (245)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.73  E-value=0.00013  Score=59.71  Aligned_cols=80  Identities=18%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCc-EE--EecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGAD-EV--FTESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~-~~--~~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+    ++++.+.+ ..++.. ..  .|-.+. .+++ +.+.....|+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTAT----SESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGG   83 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999998875    34433332 333322 12  233322 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        84 iD~lv~nAg~   93 (248)
T 3op4_A           84 VDILVNNAGI   93 (248)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.72  E-value=0.00034  Score=56.90  Aligned_cols=80  Identities=16%  Similarity=0.116  Sum_probs=54.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+    +.++.+.+ +++.....+..+-.+.+.+.+.....+++|+++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTR----TNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence            4689999999999999999999889999988875    33433333 333222333333233345555554444699999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        82 ~~Ag~   86 (244)
T 1cyd_A           82 NNAAL   86 (244)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99983

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.72  E-value=0.00022  Score=59.25  Aligned_cols=83  Identities=13%  Similarity=0.099  Sum_probs=52.4

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++  |++|.++++.+...|++++++.+... .++..+.+. ..+....+  |-.+. .+++ +.+.....|
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999998  99999999999889999998886532 223333332 33432333  32222 2222 222222233


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        84 ~id~lv~nAg~   94 (275)
T 2pd4_A           84 SLDFIVHSVAF   94 (275)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            59999999984

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.71  E-value=0.00036  Score=57.65  Aligned_cols=80  Identities=15%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEEE---ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEVF---TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    +.++.+    .++..+.....   |-.+ ..++. +.+....
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   78 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGAR----RQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDT   78 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999899999988875    333333    33344543322   2222 12222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        79 ~g~iD~lVnnAG~   91 (264)
T 3tfo_A           79 WGRIDVLVNNAGV   91 (264)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999985

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.71  E-value=0.00062  Score=56.27  Aligned_cols=80  Identities=19%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEE-E--ecCh-hhHHHHH-HHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEV-F--TESQ-LEVKNVK-GLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~-~--~~~~-~~~~~i~-~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+ ..++++.... +  |-.+ ..++++. +.....++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGT----REDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEG  101 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999988875    344433 3345555432 2  2222 1222221 22222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus       102 iD~lvnnAg~  111 (266)
T 3grp_A          102 IDILVNNAGI  111 (266)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.70  E-value=0.0002  Score=59.73  Aligned_cols=84  Identities=19%  Similarity=0.169  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC---cE-EE--ecChh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA---DE-VF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~-~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....++..+.+++.+.   .. .+  |-.+. .+++ +.+.....
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            478999999999999999998889999998887532111222233444443   22 22  22221 2222 22222222


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      |++|++++++|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            359999999985

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.70  E-value=0.00063  Score=58.49  Aligned_cols=102  Identities=9%  Similarity=0.061  Sum_probs=68.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC------CCcEEEecChhhHHHHHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL------GADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l------g~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      .+++|||+||+|.+|..+++.+...|.+|+++.+.........+.+...      .....+..+-.+.+.+.+...   +
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~  100 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK---G  100 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT---T
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc---C
Confidence            4689999999999999999999889999999997655455555555443      222333333333445555554   3


Q ss_pred             CcEEEecCCCcc------------------HHHHHHhcccC--CEEEEEcC
Q 021311          198 PALGFNCVGGNS------------------ASKVLKFLSQG--GTMVTYGG  228 (314)
Q Consensus       198 ~d~v~d~~g~~~------------------~~~~~~~l~~~--G~~v~~g~  228 (314)
                      +|+||.|++...                  ...+++.++..  .++|.+++
T Consensus       101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  151 (351)
T 3ruf_A          101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS  151 (351)
T ss_dssp             CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence            999999998521                  12345555444  48998874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.70  E-value=0.00058  Score=57.25  Aligned_cols=106  Identities=20%  Similarity=0.272  Sum_probs=65.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcH-HHHHHHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSD-EAKEKLKGLGADEV-F--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~-~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.++++.+...|++++++.+...... ...+.++..+.... +  |-.+. .+++ +.+.....|+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999988886421111 11223344554433 2  22221 2222 2222222235


Q ss_pred             CcEEEecCCCcc---------------------------HHHHHHhcccCCEEEEEcCC
Q 021311          198 PALGFNCVGGNS---------------------------ASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       198 ~d~v~d~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~  229 (314)
                      +|++++++|...                           .+.+++.|+.+|++|.+++.
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence            999999987410                           12344556678999998854

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.70  E-value=0.00028  Score=57.97  Aligned_cols=103  Identities=14%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcE-EE--ecCh-hhHHHH-HHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADE-VF--TESQ-LEVKNV-KGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~-~~--~~~~-~~~~~i-~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+.+ ++++... .+  |-.+ ..++++ .+.....|+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGR----NESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGA   82 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999988875    44444333 3444332 22  2222 122222 111122235


Q ss_pred             CcEEEecCCCcc--------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGNS--------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +|++++++|...                          .+.+++.|+.+|++|.+++..
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  141 (255)
T 4eso_A           83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA  141 (255)
T ss_dssp             EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence            999999998521                          123344566789999998654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.69  E-value=0.00047  Score=56.83  Aligned_cols=80  Identities=21%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++.+.+    +.++.+    .+...+.... +  |-.+. .++. +.+....
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTAR----DVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999888888999988875    333332    2333444322 2  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2359999999985

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.69  E-value=0.00027  Score=58.26  Aligned_cols=106  Identities=20%  Similarity=0.278  Sum_probs=63.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-cHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-SDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.... .++..+.++..+... .+  |-.+. .+++ +.+.....|+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999988899999888554211 112223334445432 22  22221 2222 2222222235


Q ss_pred             CcEEEecCCCc-c--------------------------HHHHHHhcccCCEEEEEcCC
Q 021311          198 PALGFNCVGGN-S--------------------------ASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       198 ~d~v~d~~g~~-~--------------------------~~~~~~~l~~~G~~v~~g~~  229 (314)
                      +|++++++|.. .                          ...+++.|+++|++|.+++.
T Consensus        87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  145 (259)
T 3edm_A           87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQ  145 (259)
T ss_dssp             EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCH
Confidence            99999999742 0                          02233455668899998853

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.68  E-value=0.00063  Score=54.95  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEEEecC--hh-hHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEVFTES--QL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~~~~~--~~-~~~~-i~~~~~~~g~~d  199 (314)
                      ++++||+|++|.+|..+++.+...|++++++.+    +.++.+. ...++....+..+  +. .+++ +.+.....+++|
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMAR----DEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELS   80 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999988889999988875    3444333 3344333333222  21 2222 121111112599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        81 ~li~~Ag~   88 (234)
T 2ehd_A           81 ALVNNAGV   88 (234)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.00032  Score=58.09  Aligned_cols=107  Identities=15%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLKGLGADEV-F--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      ..++++||+|+++++|.++++.+...|++++++.+..... ++..+.++..+.... +  |-.+. .+++ +.+.....|
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3579999999999999999988888899998875432111 111223344554432 2  22221 2222 222222223


Q ss_pred             CCcEEEecCCCcc--------------------------HHHHHHhcccCCEEEEEcCC
Q 021311          197 EPALGFNCVGGNS--------------------------ASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       197 ~~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~  229 (314)
                      ++|++++++|...                          ...+++.|+.+|++|.+++.
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  163 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS  163 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence            5999999998420                          12445566778999999853

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.67  E-value=0.00036  Score=57.23  Aligned_cols=86  Identities=19%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec-CCCCcHHHHHHHHhCCCcE-EEecC--h-hhHHH-HHHHhcCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR-DRAGSDEAKEKLKGLGADE-VFTES--Q-LEVKN-VKGLLANL  195 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~-~~~~~--~-~~~~~-i~~~~~~~  195 (314)
                      ..+++++||+|+++++|.+++..+...|++++++.+ ......+..+.++..+... .+..+  + ..+++ +.+.....
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV   89 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence            457899999999999999999988889999988773 3222333344445555442 22222  2 12222 22222233


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++++++|.
T Consensus        90 g~id~lv~~Ag~  101 (256)
T 3ezl_A           90 GEIDVLVNNAGI  101 (256)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            359999999984

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.67  E-value=0.00042  Score=57.14  Aligned_cols=81  Identities=17%  Similarity=0.074  Sum_probs=52.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChh-hHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQL-EVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~-~~~~-i~~~~~~~g~~d~  200 (314)
                      .++++||+|+++++|.++++.+...|++++++.+..   +...+.+...+...+ .|-.+. .+++ +.+.....|++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTE---HASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC---CHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh---HHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            468999999999999999998888999999888653   222344444554322 232222 2222 2222223346999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +++++|.
T Consensus       103 lv~nAg~  109 (260)
T 3gem_A          103 VVHNASE  109 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.67  E-value=0.00033  Score=57.84  Aligned_cols=81  Identities=14%  Similarity=0.156  Sum_probs=52.4

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecChh-hHHH-HHHHhc
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~  193 (314)
                      -.++++||+|+++++|.+.++.+...|++++++.+    +.++.+    .+...+.... +  |-.+. .+++ +.+...
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAAR----TVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK   84 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC----CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999899999988875    333332    3334444332 2  22222 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus        85 ~~g~id~lv~nAg~   98 (264)
T 3ucx_A           85 AYGRVDVVINNAFR   98 (264)
T ss_dssp             HTSCCSEEEECCCS
T ss_pred             HcCCCcEEEECCCC
Confidence            33469999999975

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.67  E-value=0.00065  Score=56.05  Aligned_cols=104  Identities=21%  Similarity=0.296  Sum_probs=64.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+. .++++... .+  |-.+. .+++ +.+.....|+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDR----EERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGR   80 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999889999998885    4444433 34454322 22  22221 2222 2222222235


Q ss_pred             CcEEEecCCCcc--------------------------HHHHHHhcccCCEEEEEcCCCC
Q 021311          198 PALGFNCVGGNS--------------------------ASKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       198 ~d~v~d~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      +|++++++|...                          ...+++.|+.+|++|.+++...
T Consensus        81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            999999998421                          0223334433799999986644

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.66  E-value=0.00032  Score=58.02  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=49.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHH-cCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARH-RGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|..+++.+.. .|++++++.+.....++..+.++..+.. ..+  |-.+. .++. +.+.....++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999988877 8999998886311111112223333432 223  22221 2222 1212111225


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++|+++|.
T Consensus        83 id~li~~Ag~   92 (276)
T 1wma_A           83 LDVLVNNAGI   92 (276)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999984

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.66  E-value=0.00045  Score=58.30  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC-c-EEE--ecCh--hhHHHHHH-HhcCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA-D-EVF--TESQ--LEVKNVKG-LLANL  195 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~-~~~--~~~~--~~~~~i~~-~~~~~  195 (314)
                      ..++++||+|+++++|.++++.+...|++++++.+.....++..+.+++.+. . ..+  |-.+  ..++.+.+ .....
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            3578999999999999999988888999999988642111222233333332 2 222  3222  22222222 11112


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++++++|.
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            259999999995

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.65  E-value=0.00051  Score=57.18  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCC--c-EEE--ecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGA--D-EVF--TESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~--~-~~~--~~~~~-~~~~-i~~~~  192 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    +.++.+    .++..+.  . ..+  |-.+. .+++ +.+..
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~  106 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCAR----TVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR  106 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEC----ChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            4689999999999999999988889999998885    333332    2333332  1 122  22221 2222 12121


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...+++|++|+++|.
T Consensus       107 ~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          107 SQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHCCCSEEEECCCC
T ss_pred             HhCCCCCEEEECCCC
Confidence            122359999999984

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.64  E-value=0.00016  Score=60.21  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHH----hCCC--cEEEecChhhHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLK----GLGA--DEVFTESQLEVKN  187 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~----~lg~--~~~~~~~~~~~~~  187 (314)
                      +.....+.++++||-.|+ |. |..+..+++..+  .+++++- .   ++...+.++    ..+.  ...+...+     
T Consensus       104 i~~~~~~~~~~~VLDiG~-G~-G~~~~~la~~~~~~~~v~~vD-~---s~~~~~~a~~~~~~~~~~~~v~~~~~d-----  172 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGV-GS-GAMCAVLARAVGSSGKVFAYE-K---REEFAKLAESNLTKWGLIERVTIKVRD-----  172 (277)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHTTTTCEEEEEC-C---CHHHHHHHHHHHHHTTCGGGEEEECCC-----
T ss_pred             HHHHhCCCCCCEEEEECC-cC-CHHHHHHHHHhCCCcEEEEEE-C---CHHHHHHHHHHHHHcCCCCCEEEEECC-----
Confidence            334478899999999998 54 888888888864  4555444 2   566665554    3343  11121111     


Q ss_pred             HHHHhcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                      +.+.... +.+|+|+......  .+..+.+.|+++|+++...
T Consensus       173 ~~~~~~~-~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          173 ISEGFDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             GGGCCSC-CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             HHHcccC-CccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            1111222 2499999866553  3478899999999998875

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.64  E-value=0.00045  Score=56.82  Aligned_cols=81  Identities=15%  Similarity=0.176  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++...   ++++.    +.++..+.... +  |-.+. .+++ +.+....
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r---~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYAR---SKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999887432   33332    23344454432 2  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        80 ~g~id~lv~nAg~   92 (258)
T 3oid_A           80 FGRLDVFVNNAAS   92 (258)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999984

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.63  E-value=0.00022  Score=59.57  Aligned_cols=80  Identities=18%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCC-Cc-EEE--ecChh-hHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLG-AD-EVF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg-~~-~~~--~~~~~-~~~~-i~~~~~  193 (314)
                      .|+++||+|+++++|.++++.+...|++++++.+    ++++.+.+    ...+ .. ..+  |-.+. .+++ +.+...
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  107 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGR----RPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA  107 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999998889999988885    33333222    2212 22 222  32222 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus       108 ~~g~iD~lvnnAG~  121 (281)
T 4dry_A          108 EFARLDLLVNNAGS  121 (281)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence            22359999999985

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.63  E-value=0.00069  Score=55.91  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=53.3

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++  |++|.++++.+...|++++++.+.. ..++..+.+ ...+....+  |-.+. .+++ +.+.....|
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46899999998  8999999998888999999888653 223333333 233433333  32222 2333 233333344


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        87 ~iD~lv~~Ag~   97 (265)
T 1qsg_A           87 KFDGFVHSIGF   97 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.63  E-value=0.00067  Score=56.25  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|.+++..+...|++++++.+.    +++.+    .++..+... .+  |-.+. .+++ +.+....
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN----KHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC----HHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999998899999888853    33332    233344432 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus       106 ~g~iD~li~~Ag~  118 (272)
T 1yb1_A          106 IGDVSILVNNAGV  118 (272)
T ss_dssp             TCCCSEEEECCCC
T ss_pred             CCCCcEEEECCCc
Confidence            2359999999984

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.63  E-value=0.00051  Score=57.94  Aligned_cols=80  Identities=24%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.+++..+...|++++++.+.    .++.+    .++..+... .+  |-.+. .+++ +.+....
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVD----QPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999988853    33333    233334432 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus       106 ~g~id~lvnnAg~  118 (301)
T 3tjr_A          106 LGGVDVVFSNAGI  118 (301)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence            2359999999984

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.63  E-value=0.00026  Score=57.80  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+.+.++.....+..+-.+.+.+.+.....+++|++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~   80 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDI----NESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFN   80 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999889999988875    444443333333222332222223334333333335999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      ++|.
T Consensus        81 ~Ag~   84 (246)
T 2ag5_A           81 VAGF   84 (246)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9984

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.63  E-value=0.00095  Score=58.50  Aligned_cols=100  Identities=12%  Similarity=0.037  Sum_probs=72.0

Q ss_pred             HHHHHHHhhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHH
Q 021311          112 ALRMLEDFTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKG  190 (314)
Q Consensus       112 a~~~l~~~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~  190 (314)
                      .+.++.+..+ .-.|++++|+|. |.+|..+++.++.+|++|+++-.    ++.+...+...|... .+     .++   
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~-G~IGr~vA~~lrafGa~Viv~d~----dp~~a~~A~~~G~~v-v~-----LeE---  298 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGY-GDVGKGSAQSLAGAGARVKVTEV----DPICALQAAMDGFEV-VT-----LDD---  298 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----SHHHHHHHHHTTCEE-CC-----HHH---
T ss_pred             HHHHHHHhcCCcccCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeC----CcchhhHHHhcCcee-cc-----HHH---
Confidence            4555555333 468999999999 99999999999999998877652    444444444556532 11     122   


Q ss_pred             HhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          191 LLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      ...   ..|+++.+.+....  ...+..|++++.++.+|-
T Consensus       299 lL~---~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGR  335 (464)
T 3n58_A          299 AAS---TADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGH  335 (464)
T ss_dssp             HGG---GCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSS
T ss_pred             HHh---hCCEEEECCCCccccCHHHHhcCCCCeEEEEcCC
Confidence            222   39999999987544  789999999999999884

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.62  E-value=0.0005  Score=57.00  Aligned_cols=81  Identities=9%  Similarity=0.035  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....   .+...+++... .+  |-.+. .+++ +.+.....|++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDL---AGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCH---HHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999998888653222   22233344332 22  32222 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        87 d~lv~nAg~   95 (271)
T 3tzq_B           87 DIVDNNAAH   95 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.62  E-value=0.00015  Score=54.71  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=61.9

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      ....++++|+|+|+ |.+|..+++.++..|.+++++.+    ++++.+.++ ..|... +..+....+.+.+. +-. ++
T Consensus        14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~----~~~~~~~~~~~~g~~~-~~~d~~~~~~l~~~-~~~-~a   85 (155)
T 2g1u_A           14 SKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDK----NEYAFHRLNSEFSGFT-VVGDAAEFETLKEC-GME-KA   85 (155)
T ss_dssp             ---CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CGGGGGGSCTTCCSEE-EESCTTSHHHHHTT-TGG-GC
T ss_pred             hcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEEC----CHHHHHHHHhcCCCcE-EEecCCCHHHHHHc-Ccc-cC
Confidence            34567899999998 99999999999999998877764    455555555 556543 33322222333332 112 39


Q ss_pred             cEEEecCCCccH-HHHHHhcc---cCCEEEEEc
Q 021311          199 ALGFNCVGGNSA-SKVLKFLS---QGGTMVTYG  227 (314)
Q Consensus       199 d~v~d~~g~~~~-~~~~~~l~---~~G~~v~~g  227 (314)
                      |+||.|++.+.. ..+...++   +..+++...
T Consensus        86 d~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           86 DMVFAFTNDDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            999999998654 33333333   344555543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.61  E-value=0.00073  Score=55.57  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=52.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    +.++. +...+++... .+  |-.+. .+++ +.+.....|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   82 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADI----DIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGG   82 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999988889999988875    33333 3334454432 22  22222 2222 2223333345


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        83 id~lv~~Ag~   92 (259)
T 4e6p_A           83 LDILVNNAAL   92 (259)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.61  E-value=0.0008  Score=54.86  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.   ++++.    +.++..+... .+  |-.+. .+++ +.+....
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAG---NEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998899999988752   23332    2233344432 22  22221 2222 2222122


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 2uvd_A           80 FGQVDILVNNAGV   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999984

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.60  E-value=0.00094  Score=54.50  Aligned_cols=80  Identities=18%  Similarity=0.101  Sum_probs=51.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEVF---TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    +.++.+ ...+++.....   |-.+ ..+++ +.+.....|+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDI----NAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGG   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            4789999999999999999999999999988775    344333 33445544332   2222 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        81 id~lv~nAg~   90 (247)
T 3rwb_A           81 IDILVNNASI   90 (247)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.60  E-value=0.00025  Score=58.18  Aligned_cols=78  Identities=8%  Similarity=-0.083  Sum_probs=48.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecCh--hhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQ--LEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~--~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +++||+|++|++|.++++.+...|++++++.+.....++..+ ++..+.+.. +|..+  ...+.+.+..   +++|+++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~~~~~~d~~~v~~~~~~~~~~~---g~iD~lv   77 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQLKPMSEQEPAELIEAVTSAY---GQVDVLV   77 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCTTSEECCCCSHHHHHHHHHHHH---SCCCEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCCcEEEECHHHHHHHHHHHHHHh---CCCCEEE
Confidence            479999999999999999999999999888764322111112 333343322 22221  1123333333   2599999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        78 ~nAg~   82 (254)
T 1zmt_A           78 SNDIF   82 (254)
T ss_dssp             EECCC
T ss_pred             ECCCc
Confidence            99985

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.60  E-value=0.00046  Score=58.19  Aligned_cols=92  Identities=14%  Similarity=0.158  Sum_probs=68.4

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      -.+++++|+|+ |.+|..+++.++.+|++++++.+    +.++.+.+.++|.. .++..     .+.+...   +.|+|+
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~----~~~~~~~~~~~g~~-~~~~~-----~l~~~l~---~aDvVi  220 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTFAALGANVKVGAR----SSAHLARITEMGLV-PFHTD-----ELKEHVK---DIDICI  220 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHTTCE-EEEGG-----GHHHHST---TCSEEE
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHCCCe-EEchh-----hHHHHhh---CCCEEE
Confidence            46899999998 99999999999999998777663    45555555567754 22221     1223332   399999


Q ss_pred             ecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          203 NCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       203 d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      .++..... ...++.|++++.++.++.
T Consensus       221 ~~~p~~~i~~~~~~~mk~g~~lin~a~  247 (300)
T 2rir_A          221 NTIPSMILNQTVLSSMTPKTLILDLAS  247 (300)
T ss_dssp             ECCSSCCBCHHHHTTSCTTCEEEECSS
T ss_pred             ECCChhhhCHHHHHhCCCCCEEEEEeC
Confidence            99997655 567789999999999984

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.59  E-value=0.0013  Score=53.89  Aligned_cols=82  Identities=17%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+...  ++..+.+...+.... +  |-.+ ..+++ +.+.....|++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999999988889999988876432  333344444454332 2  2222 12222 22221122359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        81 d~lv~~Ag~   89 (255)
T 2q2v_A           81 DILVNNAGI   89 (255)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.59  E-value=0.00052  Score=56.89  Aligned_cols=80  Identities=19%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCc-EEE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGAD-EVF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.    +++.+    .++..+.. ..+  |-.+. .+++ +.+....
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATT----EAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE  102 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS----HHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999888899999888853    33332    23333332 222  33222 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus       103 ~g~iD~lvnnAg~  115 (270)
T 3ftp_A          103 FGALNVLVNNAGI  115 (270)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999984

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.58  E-value=0.00031  Score=57.63  Aligned_cols=83  Identities=16%  Similarity=0.128  Sum_probs=54.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....++..+.++..+.... +  |-.+ ..+++ +.+.... |++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~i   84 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-APL   84 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-SCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-CCc
Confidence            578999999999999999999999999999888654333334444555554432 2  2222 12222 2222222 369


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        85 d~lv~nAg~   93 (252)
T 3h7a_A           85 EVTIFNVGA   93 (252)
T ss_dssp             EEEEECCCC
T ss_pred             eEEEECCCc
Confidence            999999994

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.58  E-value=0.00043  Score=56.76  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCC-CCCcEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANL-PEPALGFNC  204 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~-g~~d~v~d~  204 (314)
                      +++||+|++|.+|.++++.+...|++++++.+.....+          ..  +..+-.+.+.+.+..... +++|+++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----------~~--~~~Dl~~~~~v~~~~~~~~~~id~lv~~   69 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI----------AD--LSTAEGRKQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE----------CC--TTSHHHHHHHHHHHHTTCTTCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc----------cc--cccCCCCHHHHHHHHHHhCCCCCEEEEC
Confidence            47999999999999999988889999998886432111          01  111111223444444433 469999999


Q ss_pred             CCCcc-------------------HHHHHHhccc--CCEEEEEcCCC
Q 021311          205 VGGNS-------------------ASKVLKFLSQ--GGTMVTYGGMS  230 (314)
Q Consensus       205 ~g~~~-------------------~~~~~~~l~~--~G~~v~~g~~~  230 (314)
                      +|...                   ...+++.|+.  .|++|.+++..
T Consensus        70 Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           70 AGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            98643                   1334445543  38999998654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.57  E-value=0.0006  Score=59.70  Aligned_cols=99  Identities=13%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             HHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHH
Q 021311          112 ALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKG  190 (314)
Q Consensus       112 a~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~  190 (314)
                      .+.++.+.... -.|++|.|.|. |.+|...++.++.+|++++++-.    ++.+...+...|...+      .   +.+
T Consensus       197 lldgi~ratg~~L~GktVgIiG~-G~IG~~vA~~Lka~Ga~Viv~D~----~p~~a~~A~~~G~~~~------s---L~e  262 (436)
T 3h9u_A          197 LVDGIKRATDVMIAGKTACVCGY-GDVGKGCAAALRGFGARVVVTEV----DPINALQAAMEGYQVL------L---VED  262 (436)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTCEEC------C---HHH
T ss_pred             HHHHHHHhcCCcccCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECC----ChhhhHHHHHhCCeec------C---HHH
Confidence            44555543333 36899999998 99999999999999998776552    5555555556665321      1   222


Q ss_pred             HhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEc
Q 021311          191 LLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g  227 (314)
                      ...   ..|+++.+.+....  ...++.|+++..++.++
T Consensus       263 al~---~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvg  298 (436)
T 3h9u_A          263 VVE---EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIG  298 (436)
T ss_dssp             HTT---TCSEEEECSSCSCSBCTTTGGGCCTTEEEEECS
T ss_pred             HHh---hCCEEEECCCCcCccCHHHHhhcCCCcEEEEeC
Confidence            222   39999998887543  57789999999999887

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.57  E-value=0.00079  Score=55.60  Aligned_cols=103  Identities=15%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhC-----CCc-EEE--ecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGL-----GAD-EVF--TESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~l-----g~~-~~~--~~~~~-~~~~-i~~~~  192 (314)
                      .++++||+|++|.+|.+.++.+...|++++++.+    +.++.+. ...+     +.. ..+  |-.+. .+++ +.+..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDW----NLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV   81 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999889999998875    3333322 2222     111 222  22221 2222 22221


Q ss_pred             cCCCCCcEEEecCCCc---cH---------------HHHHHhccc-----CCEEEEEcCCC
Q 021311          193 ANLPEPALGFNCVGGN---SA---------------SKVLKFLSQ-----GGTMVTYGGMS  230 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~---~~---------------~~~~~~l~~-----~G~~v~~g~~~  230 (314)
                      ...|++|++++++|..   .+               ..+++.|+.     .|++|.+++..
T Consensus        82 ~~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (267)
T 2gdz_A           82 DHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  142 (267)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             HHcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence            2223599999999852   11               233444533     58999988643

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.56  E-value=0.00078  Score=56.22  Aligned_cols=106  Identities=13%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC--------cHHHHH----HHHhCCCcEE-E--ecChh-hHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG--------SDEAKE----KLKGLGADEV-F--TESQL-EVKN  187 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~--------~~~~~~----~~~~lg~~~~-~--~~~~~-~~~~  187 (314)
                      .++++||+|+++++|.++++.+...|++++++.+....        +.++.+    .+...+.... +  |-.+. .+++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            47899999999999999999999999999888753110        122222    2334454332 2  22221 2222


Q ss_pred             -HHHHhcCCCCCcEEEecCCCcc------------------------HHHHHHhcccCCEEEEEcCC
Q 021311          188 -VKGLLANLPEPALGFNCVGGNS------------------------ASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       188 -i~~~~~~~g~~d~v~d~~g~~~------------------------~~~~~~~l~~~G~~v~~g~~  229 (314)
                       +.+.....|++|++++++|...                        ...++..|..+|++|.+++.
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence             2222222235999999998521                        12334455678999998853

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.56  E-value=0.00071  Score=56.82  Aligned_cols=105  Identities=13%  Similarity=0.160  Sum_probs=64.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEEE---ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEVF---TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+..  .++..    +.++..+....+   |-.+ ..+++ +.+....
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA--EEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG--GHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc--chhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999998876431  12222    233445544332   2222 12222 2222222


Q ss_pred             CCCCcEEEecCCCcc---------------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          195 LPEPALGFNCVGGNS---------------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .|++|++++++|...                           .+.++..|+++|++|.+++..
T Consensus       126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~  188 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQ  188 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGG
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChh
Confidence            235999999998410                           123445566789999998643

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.55  E-value=0.00051  Score=57.55  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE-EecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV-FTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .|+++||+|++|++|.++++.+...|++++++.+    +.++.+.+ ..++.... +..+-.+.+.+++.....+++|++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVR----DTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVL   90 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            5789999999999999999998899999998885    44444433 44544322 222222334454444433459999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      ++++|.
T Consensus        91 v~nAg~   96 (291)
T 3rd5_A           91 INNAGI   96 (291)
T ss_dssp             EECCCC
T ss_pred             EECCcC
Confidence            999984

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.55  E-value=0.0013  Score=54.70  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=51.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEV-F--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+ ...+++.... +  |-.+ ..+++ +.+.....|+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADV----NEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGR  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999899999988875    344333 3344554432 2  2222 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus       102 iD~lv~nAg~  111 (277)
T 4dqx_A          102 VDVLVNNAGF  111 (277)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.55  E-value=0.00063  Score=60.51  Aligned_cols=101  Identities=17%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             HHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHH
Q 021311          112 ALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKG  190 (314)
Q Consensus       112 a~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~  190 (314)
                      .+.++.+..+. -.|++++|+|+ |.+|.++++.++..|++|+++..    ++.+...+...+.+ +.+..     ++  
T Consensus       251 l~dgi~r~tg~~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~----~~~~a~~Aa~~g~d-v~~le-----e~--  317 (488)
T 3ond_A          251 LPDGLMRATDVMIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEI----DPICALQATMEGLQ-VLTLE-----DV--  317 (488)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTCE-ECCGG-----GT--
T ss_pred             HHHHHHHHcCCcccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHhCCc-cCCHH-----HH--
Confidence            34445444443 47999999999 79999999999999998776542    56666666666643 11111     11  


Q ss_pred             HhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcCC
Q 021311          191 LLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~~  229 (314)
                       ..   .+|+++++.|....  ...++.|++++.++.+|..
T Consensus       318 -~~---~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          318 -VS---EADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             -TT---TCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             -HH---hcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence             11   49999999987543  5688999999999998843

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.55  E-value=0.00062  Score=55.55  Aligned_cols=80  Identities=19%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCC---CcEEE--ecChh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLG---ADEVF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg---~~~~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    +.++.+. .+.+.   ....+  |..+. .++. +.+.....
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999988889999988885    3333332 22222   22223  22221 2222 11111112


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++|+++|.
T Consensus        81 ~~id~li~~Ag~   92 (251)
T 1zk4_A           81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            259999999984

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.55  E-value=0.00011  Score=61.17  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCcE--EEecChhhHHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGADE--VFTESQLEVKNVKGL  191 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~--~~~~~~~~~~~i~~~  191 (314)
                      .+++++++++||.+|+ |+.+..++.+++..|++++++-.    +++..+.+++    .|.+.  ++..+..   +   +
T Consensus       116 ~la~l~~g~rVLDIGc-G~G~~ta~~lA~~~ga~V~gIDi----s~~~l~~Ar~~~~~~gl~~v~~v~gDa~---~---l  184 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGG-GPLPLTGILLSHVYGMRVNVVEI----EPDIAELSRKVIEGLGVDGVNVITGDET---V---I  184 (298)
T ss_dssp             HHTTCCTTCEEEEECC-CSSCHHHHHHHHTTCCEEEEEES----SHHHHHHHHHHHHHHTCCSEEEEESCGG---G---G
T ss_pred             HHcCCCCcCEEEEECC-CccHHHHHHHHHccCCEEEEEEC----CHHHHHHHHHHHHhcCCCCeEEEECchh---h---C
Confidence            3578899999999999 76677777788888999888773    6776666643    34321  2222211   1   2


Q ss_pred             hcCCCCCcEEEecCCCc----cHHHHHHhcccCCEEEEEcC
Q 021311          192 LANLPEPALGFNCVGGN----SASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g~  228 (314)
                      . .. .||+|+.....+    .+..+.+.|+|||+++....
T Consensus       185 ~-d~-~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          185 D-GL-EFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             G-GC-CCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             C-CC-CcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            2 22 599999766543    24788899999999998763

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.54  E-value=0.00079  Score=55.25  Aligned_cols=79  Identities=16%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      ++++||+|++|++|.++++.+...|++++++.+.    +++.+    .++..+... .+  |-.+. .+++ +.+.....
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN----DATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL   77 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999998899999888753    33322    223334332 22  22221 2222 22222223


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      |++|++++++|.
T Consensus        78 g~id~lv~nAg~   89 (256)
T 1geg_A           78 GGFDVIVNNAGV   89 (256)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            359999999984

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.54  E-value=0.0012  Score=54.79  Aligned_cols=80  Identities=18%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    +.++.+ ...+++.. ..+  |-.+. .+++ +.+.....|+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGR----RLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999988889999988875    344433 33444432 222  22221 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus       103 iD~lVnnAg~  112 (272)
T 4dyv_A          103 VDVLFNNAGT  112 (272)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.54  E-value=0.0012  Score=54.93  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+ ...+++.. ..+  |-.+. .+++ +.+.....|+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADI----DGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGG  103 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999988889999988875    334333 33444433 222  22222 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus       104 iD~lvnnAg~  113 (277)
T 3gvc_A          104 VDKLVANAGV  113 (277)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.54  E-value=0.00045  Score=56.85  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC-----C-CcEEE--ecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL-----G-ADEVF--TESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l-----g-~~~~~--~~~~~-~~~~-i~~~~  192 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+.+ +++     + ....+  |-.+. .++. +.+..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSR----NREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKAR   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            4689999999999999999988889999988875    33333222 222     2 12222  32222 2222 33333


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...| +|++++++|.
T Consensus        82 ~~~g-id~lv~~Ag~   95 (260)
T 2z1n_A           82 DLGG-ADILVYSTGG   95 (260)
T ss_dssp             HTTC-CSEEEECCCC
T ss_pred             HhcC-CCEEEECCCC
Confidence            4445 9999999984

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.53  E-value=0.0008  Score=55.18  Aligned_cols=80  Identities=16%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEV-F--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+ ..++++.... +  |-.+. .+++ +.+.....|+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADV----LDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999988875    344433 3344543322 2  22221 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        80 iD~lv~nAg~   89 (254)
T 1hdc_A           80 VDGLVNNAGI   89 (254)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.53  E-value=0.002  Score=52.57  Aligned_cols=82  Identities=18%  Similarity=0.169  Sum_probs=51.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHHH-HHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKNV-KGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~i-~~~~~~~g~~  198 (314)
                      .++++||+|++|++|.++++.+...|++++++.+..  .+...+.+++.+... .+  |-.+. .++++ .+.....+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP--APEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   83 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC--CHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc--hhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999888999999887642  022222444555432 22  22221 22221 2221112359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        84 d~lv~nAg~   92 (249)
T 2ew8_A           84 DILVNNAGI   92 (249)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.53  E-value=0.0007  Score=55.76  Aligned_cols=83  Identities=19%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEec--Chh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTE--SQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~--~~~-~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++  |.+|.++++.+...|++++++.+... .++..+.+ ...+....+..  .+. .+++ +.+.....|
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999998  89999999888888999988876421 12233333 23443333322  221 2222 222222223


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        86 ~iD~lv~~Ag~   96 (261)
T 2wyu_A           86 GLDYLVHAIAF   96 (261)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            59999999984

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.52  E-value=0.00091  Score=55.08  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    +.++.+    .++..+... .+  |-.+. .++. +.+....
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM----NREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999988875    333332    223334332 22  22222 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        82 ~g~id~lv~nAg~   94 (262)
T 1zem_A           82 FGKIDFLFNNAGY   94 (262)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            2359999999984

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.52  E-value=0.0005  Score=54.93  Aligned_cols=95  Identities=13%  Similarity=0.067  Sum_probs=63.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|||+|++|.+|..+++.+...|.+++++.+.    .++.   ..+.....+..+-.+ .+.+.+...   ++|+||.|+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~----~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~---~~d~vi~~a   71 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARK----VEQV---PQYNNVKAVHFDVDWTPEEMAKQLH---GMDAIINVS   71 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESS----GGGS---CCCTTEEEEECCTTSCHHHHHTTTT---TCSEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECC----ccch---hhcCCceEEEecccCCHHHHHHHHc---CCCEEEECC
Confidence            69999999999999999999999999999864    2211   111222333333333 455666554   399999999


Q ss_pred             CCcc----------HHHHHHhcccC--CEEEEEcCCCC
Q 021311          206 GGNS----------ASKVLKFLSQG--GTMVTYGGMSK  231 (314)
Q Consensus       206 g~~~----------~~~~~~~l~~~--G~~v~~g~~~~  231 (314)
                      |...          ...+++.++..  +++|.+++...
T Consensus        72 g~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           72 GSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             CCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             cCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            8632          23455555443  58999886543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.52  E-value=0.0011  Score=54.48  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=50.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGAD-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    +.++.+. ...++.. ..+  |-.+. .+++ +.+.....|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   81 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDI----LDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999988889999988875    3343333 2334322 222  22221 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        82 iD~lv~~Ag~   91 (260)
T 1nff_A           82 LHVLVNNAGI   91 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.52  E-value=0.00093  Score=55.77  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEE--ecChh-hHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVF--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++  |++|.++++.+...|++++++.+... .++..+.+. ..+....+  |-.+. .++. +.+.....|
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999998  89999999988888999998886421 122333332 23432233  32221 2222 222222233


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        99 ~iD~lv~~Ag~  109 (285)
T 2p91_A           99 SLDIIVHSIAY  109 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            59999999984

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.51  E-value=0.0004  Score=56.89  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhC-C-CcEE--Eec--Ch-hhHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGL-G-ADEV--FTE--SQ-LEVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~l-g-~~~~--~~~--~~-~~~~~-i~~~  191 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+.+    ... + ....  .|-  .+ ...++ +.+.
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGR----NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence            5789999999999999999988899999988875    34333322    221 1 1122  232  21 22222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        87 ~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHCSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence            2333469999999984

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.51  E-value=0.00058  Score=55.62  Aligned_cols=79  Identities=16%  Similarity=0.058  Sum_probs=48.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhH---HHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEV---KNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~---~~i~~~~~~~g~~d~  200 (314)
                      .++++||+|++|++|.++++.+.. |++++++.+    ++++.+.+.++.....+..+-...   +.+.+.....+++|+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   78 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGR----NPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDT   78 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEES----CHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeC----CHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCE
Confidence            368999999999999999877765 888888774    555555555543333333322111   112222233346999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +++++|.
T Consensus        79 lv~~Ag~   85 (245)
T 3e9n_A           79 LVHAAAV   85 (245)
T ss_dssp             EEECC--
T ss_pred             EEECCCc
Confidence            9999985

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.51  E-value=0.00082  Score=55.61  Aligned_cols=81  Identities=23%  Similarity=0.247  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.   +.++.    +.++..+.... +  |-.+. .+++ +.+....
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS---SSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC---chHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999888899999888862   23322    23334454422 2  22221 2222 2222111


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        97 ~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           97 FGGLDFVMSNSGM  109 (274)
T ss_dssp             HSCEEEEECCCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2259999999984

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.50  E-value=0.00069  Score=56.21  Aligned_cols=78  Identities=17%  Similarity=0.066  Sum_probs=49.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCC---CcEEEecChhhHHHHHHH----hcCCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLG---ADEVFTESQLEVKNVKGL----LANLPE  197 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg---~~~~~~~~~~~~~~i~~~----~~~~g~  197 (314)
                      +++||+|++|++|.++++.+...|++++++.+    ++++.+.+ .++.   ....+..+-.+.+.+.+.    ....|+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   97 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGR----REERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFAT   97 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            78999999999999999998889999998875    34443332 2232   122232222222223222    222246


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        98 iD~lvnnAG~  107 (272)
T 2nwq_A           98 LRGLINNAGL  107 (272)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.50  E-value=0.0019  Score=53.58  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=52.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-------cHHHHHHHHhCCCcEE-E--ecChh-hHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-------SDEAKEKLKGLGADEV-F--TESQL-EVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-------~~~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~  191 (314)
                      .++++||+|+++++|.++++.+...|++++++.+....       .++..+.++..+.... +  |-.+. .+++ +.+.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            47899999999999999999888899999988865432       1122233333444322 2  22221 2222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        85 ~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           85 VDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            2222359999999984

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.50  E-value=0.0018  Score=52.67  Aligned_cols=84  Identities=19%  Similarity=0.209  Sum_probs=48.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC-CCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR-AGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.. ...++..+.++..+... .+  |-.+. .+++ +.+.....++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999988999998884321 11122223334444432 22  22221 2222 1211111225


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++|+++|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.50  E-value=0.0024  Score=54.89  Aligned_cols=84  Identities=14%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-------HHHHHHHHhCCCcEEE---ecChh-hHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-------DEAKEKLKGLGADEVF---TESQL-EVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-------~~~~~~~~~lg~~~~~---~~~~~-~~~~-i~~~  191 (314)
                      .|+++||+|+++++|.++++.+...|++++++.+.....       .+..+.++..+.....   |-.+. .+++ +.+.
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~  123 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA  123 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            579999999999999999999989999999888754321       1233444555544322   33222 2222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus       124 ~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          124 IKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            2222359999999984

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.49  E-value=0.00057  Score=56.38  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=63.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.. .+.++.+    .++..+.... +  |-.+ ..+++ +.+....
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA-KDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG-GGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc-cCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999998876431 1222322    2233444322 2  2222 22222 2222222


Q ss_pred             CCCCcEEEecCCCc-----------c---------------HHHHHHhcccCCEEEEEcCC
Q 021311          195 LPEPALGFNCVGGN-----------S---------------ASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       195 ~g~~d~v~d~~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~  229 (314)
                      .|++|++++++|..           .               ...+++.|+++|++|.+++.
T Consensus        89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~  149 (262)
T 3ksu_A           89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS  149 (262)
T ss_dssp             HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence            23599999999841           0               12334455678999998753

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.49  E-value=0.00051  Score=57.70  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC-c-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA-D-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....++..+.+++.+. . ..+  |-.+. .+++ +.+.....|+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999888653333333344444442 2 222  22221 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus       120 iD~lvnnAg~  129 (293)
T 3rih_A          120 LDVVCANAGI  129 (293)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.49  E-value=0.00085  Score=55.42  Aligned_cols=80  Identities=16%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHh-CCCcE-EE--ecChh-hHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKG-LGADE-VF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~-lg~~~-~~--~~~~~-~~~~-i~~~~~  193 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    +.++.+.    +.+ .+... .+  |-.+. .+++ +.+...
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   94 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGR----DVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE   94 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988885    3333322    222 34332 22  22222 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus        95 ~~g~id~lv~nAg~  108 (266)
T 4egf_A           95 AFGGLDVLVNNAGI  108 (266)
T ss_dssp             HHTSCSEEEEECCC
T ss_pred             HcCCCCEEEECCCc
Confidence            22359999999984

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.47  E-value=0.0012  Score=52.53  Aligned_cols=92  Identities=17%  Similarity=0.280  Sum_probs=60.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||+|++|.+|..+++.+...|.+++++.+.    +++.+.+. .+. ..+..+-.+.+.  +...   ++|+||.|+|
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~----~~~~~~~~-~~~-~~~~~D~~d~~~--~~~~---~~d~vi~~ag   70 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRN----AGKITQTH-KDI-NILQKDIFDLTL--SDLS---DQNVVVDAYG   70 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC----SHHHHHHC-SSS-EEEECCGGGCCH--HHHT---TCSEEEECCC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcC----chhhhhcc-CCC-eEEeccccChhh--hhhc---CCCEEEECCc
Confidence            69999999999999999999999999999863    44443332 232 233222211111  2222   4999999998


Q ss_pred             Ccc---------HHHHHHhcccC--CEEEEEcCC
Q 021311          207 GNS---------ASKVLKFLSQG--GTMVTYGGM  229 (314)
Q Consensus       207 ~~~---------~~~~~~~l~~~--G~~v~~g~~  229 (314)
                      ...         ...+++.++..  +++|.+++.
T Consensus        71 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           71 ISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             SSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            731         24666666554  799988754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.46  E-value=0.00045  Score=56.55  Aligned_cols=98  Identities=18%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-hhHHH-HHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-LEVKN-VKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~-i~~~~~~~g~~d~v  201 (314)
                      -++++||+|++|++|.++++.+...|++++++.+......         .....++..+ ..+++ +.+.....+++|++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------DHSFTIKDSGEEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------SEEEECSCSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------ccceEEEeCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3689999999999999999999999999988886532111         1111222222 22333 33333334469999


Q ss_pred             EecCCCc--------c-------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          202 FNCVGGN--------S-------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       202 ~d~~g~~--------~-------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ++++|..        .                   ...+++.++++|++|.+++..
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence            9999831        0                   123445666789999998543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.46  E-value=0.0012  Score=54.86  Aligned_cols=85  Identities=13%  Similarity=0.050  Sum_probs=52.3

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC---------CcHHHHH----HHHhCCCcEEE---ecChh-hH
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA---------GSDEAKE----KLKGLGADEVF---TESQL-EV  185 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~---------~~~~~~~----~~~~lg~~~~~---~~~~~-~~  185 (314)
                      -.++++||+|+++++|.++++.+...|++++++.+...         .+.++.+    .++..+.....   |-.+. .+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            35799999999999999999999999999998865210         1233332    23344544322   22221 22


Q ss_pred             HH-HHHHhcCCCCCcEEEecCCC
Q 021311          186 KN-VKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       186 ~~-i~~~~~~~g~~d~v~d~~g~  207 (314)
                      ++ +.+.....|++|++++++|.
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            22 22222222359999999985

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.45  E-value=0.00084  Score=54.66  Aligned_cols=76  Identities=9%  Similarity=-0.000  Sum_probs=48.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEE-e--cCCCCcHHHHHH-HHhC-CCcEEEecChhhHHH-HHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINI-I--RDRAGSDEAKEK-LKGL-GADEVFTESQLEVKN-VKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~-~--~~~~~~~~~~~~-~~~l-g~~~~~~~~~~~~~~-i~~~~~~~g~~  198 (314)
                      ++++||+|++|++|.++++.+...|++++++ .  +    +.++.+. ..++ +.+ +.+..  .+++ +.+.....|++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r----~~~~~~~~~~~~~~~~-~~~~~--~v~~~~~~~~~~~g~i   73 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFA----DAAERQRFESENPGTI-ALAEQ--KPERLVDATLQHGEAI   73 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGG----SHHHHHHHHHHSTTEE-ECCCC--CGGGHHHHHGGGSSCE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcC----CHHHHHHHHHHhCCCc-ccCHH--HHHHHHHHHHHHcCCC
Confidence            4789999999999999999998999998887 4  5    3333333 3344 322 22222  2222 22222333459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        74 D~lv~~Ag~   82 (244)
T 1zmo_A           74 DTIVSNDYI   82 (244)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999983

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.45  E-value=0.0014  Score=53.57  Aligned_cols=79  Identities=22%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcE--EE--ecChh-hHHHH-HHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADE--VF--TESQL-EVKNV-KGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~--~~--~~~~~-~~~~i-~~~~~~~g  196 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    +.++.+. .++++...  .+  |..+. .++++ .+... .+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~   84 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDR----EAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEA-VA   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHH-HS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHh-hC
Confidence            4689999999999999999998889999998885    3343332 23344332  22  22221 22221 11111 22


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        85 ~id~li~~Ag~   95 (254)
T 2wsb_A           85 PVSILVNSAGI   95 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCcc
Confidence            59999999984

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.44  E-value=0.0022  Score=52.39  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEV-F--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    ++++.+. .++++.... +  |-.+ ..+++ +.+.....|+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDI----NEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999988888999888775    3444333 333443322 2  2222 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        81 id~lv~~Ag~   90 (253)
T 1hxh_A           81 LNVLVNNAGI   90 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.44  E-value=0.0003  Score=57.00  Aligned_cols=98  Identities=10%  Similarity=0.147  Sum_probs=63.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .++|||+|++|.+|.++++.+...| ++++++.+.    +++...+...+. .++..+-.+.+.+.+...+   +|++|.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~----~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~---~D~vv~   94 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQ----PAKIHKPYPTNS-QIIMGDVLNHAALKQAMQG---QDIVYA   94 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESS----GGGSCSSCCTTE-EEEECCTTCHHHHHHHHTT---CSEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcC----hhhhcccccCCc-EEEEecCCCHHHHHHHhcC---CCEEEE
Confidence            3689999999999999999999999 788888864    222111111111 2232222233455555543   999999


Q ss_pred             cCCCccH----HHHHHhcccC--CEEEEEcCCC
Q 021311          204 CVGGNSA----SKVLKFLSQG--GTMVTYGGMS  230 (314)
Q Consensus       204 ~~g~~~~----~~~~~~l~~~--G~~v~~g~~~  230 (314)
                      +++....    ..+++.++..  +++|.+++..
T Consensus        95 ~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           95 NLTGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             ECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             cCCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            9998543    4556666543  6899988644

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.44  E-value=0.002  Score=53.77  Aligned_cols=84  Identities=12%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-------cHHHHHHHHhCCCcEE-E--ecChh-hHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-------SDEAKEKLKGLGADEV-F--TESQL-EVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-------~~~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~  191 (314)
                      .++++||+|+++++|.++++.+...|++++++.+....       -++..+.++..+.... +  |-.+. .+++ +.+.
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            47899999999999999999988899999988875431       1122333444454332 2  22221 2222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        88 ~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           88 VEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            2222359999999984

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.43  E-value=0.00069  Score=54.85  Aligned_cols=34  Identities=18%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++++||+|++|.+|.++++.+...|++++++.+.
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~   36 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS   36 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence            5789999999999999999999999999988864

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.43  E-value=0.0016  Score=53.36  Aligned_cols=81  Identities=16%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+.   +.++.    +.++..+... .+  |..+. ..++ +.+....
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~---~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS---KEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCC---ChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999998888889999988852   22222    2233334332 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++|+++|.
T Consensus        83 ~g~id~li~~Ag~   95 (261)
T 1gee_A           83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2259999999984

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.43  E-value=0.0013  Score=53.63  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=49.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EE--ecChh-hHHHH-HHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VF--TESQL-EVKNV-KGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~--~~~~~-~~~~i-~~~~~~  194 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+.    .++.    +.++..+... .+  |-.+. .++++ .+....
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN----ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999888899999888753    3332    2233334332 22  22221 22221 111111


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|+++.++|.
T Consensus        86 ~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           86 LGKVDILVNNAGG   98 (255)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2259999999984

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.43  E-value=0.0006  Score=55.40  Aligned_cols=80  Identities=14%  Similarity=0.057  Sum_probs=48.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCc-EE-E--ecChh-hHHHH-HHHhcC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGAD-EV-F--TESQL-EVKNV-KGLLAN  194 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~-~~-~--~~~~~-~~~~i-~~~~~~  194 (314)
                      ++++||+|++|.+|..+++.+...|++++++.+.   +.++.+.    ++..+.. .. +  |-.+. .++++ .+....
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQ---NREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEV   77 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESS---CHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999998899999887332   3333322    2333433 22 3  22221 22221 111111


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        78 ~~~~d~li~~Ag~   90 (245)
T 2ph3_A           78 LGGLDTLVNNAGI   90 (245)
T ss_dssp             HTCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1259999999984

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.43  E-value=0.0012  Score=54.92  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.+.++.+...|++++++.+.....++..+.++..+.. ..+  |-.+. .+++ +.+.....|++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  110 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI  110 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999998899999998887543333334444444433 223  22221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus       111 D~lvnnAg~  119 (276)
T 3r1i_A          111 DIAVCNAGI  119 (276)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.42  E-value=0.00019  Score=57.67  Aligned_cols=87  Identities=18%  Similarity=0.120  Sum_probs=58.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-hhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-LEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .++++||+|+++++|.+.++.+...|++++++.+.    .+             .|-.+ ..++++.+..   +++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~----~~-------------~D~~~~~~v~~~~~~~---g~id~lv   64 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQ----TG-------------LDISDEKSVYHYFETI---GAFDHLI   64 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGG----GT-------------CCTTCHHHHHHHHHHH---CSEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCC----cc-------------cCCCCHHHHHHHHHHh---CCCCEEE
Confidence            46889999999999999999888889998888753    11             22222 2233333322   3599999


Q ss_pred             ecCCCc--------c-------------------HHHHHHhcccCCEEEEEcCCC
Q 021311          203 NCVGGN--------S-------------------ASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       203 d~~g~~--------~-------------------~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +++|..        .                   .+.+++.|+++|++|.+++..
T Consensus        65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~  119 (223)
T 3uce_A           65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGML  119 (223)
T ss_dssp             ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchh
Confidence            999842        0                   123344566789999998543

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.42  E-value=0.00074  Score=62.77  Aligned_cols=84  Identities=14%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec---------CCCCcHHHHHHHHhCCCcEEEecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR---------DRAGSDEAKEKLKGLGADEVFTESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~---------~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~-i~~~~  192 (314)
                      .|+++||+|+++++|.+.+..+...|++++++.+         .....++..+.++..+...+.|..+. ..++ +.+..
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            5789999999999999999988889999988754         21122233344555666666665543 2233 22233


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...|++|++++++|.
T Consensus        98 ~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           98 KAFGRVDILVNNAGI  112 (613)
T ss_dssp             -------CEECCCCC
T ss_pred             HHCCCCcEEEECCCC
Confidence            333469999999985

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.42  E-value=0.0015  Score=54.31  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=30.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|+++++|.++++.+...|++++++.+
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEec
Confidence            5789999999999999999999999999998865

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.42  E-value=0.0012  Score=55.13  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~   56 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHN   56 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46899999999999999999888889999988864

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.41  E-value=0.00086  Score=54.65  Aligned_cols=84  Identities=14%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+.....++..+.+++.+.... +  |-.+ ..+++ +.+.....+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999998888999999888632111112223344454422 2  2222 22222 22333334469


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        84 d~li~~Ag~   92 (247)
T 3lyl_A           84 DILVNNAGI   92 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.41  E-value=0.0012  Score=54.99  Aligned_cols=80  Identities=19%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    ++++.+    .++..+... .+  |-.+. .+++ +.+....
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISR----TQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEES----SHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcC----CHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence            3689999999999999999988888999988664    333322    233334432 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++|+++|.
T Consensus       119 ~~~id~li~~Ag~  131 (285)
T 2c07_A          119 HKNVDILVNNAGI  131 (285)
T ss_dssp             CSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999984

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.41  E-value=0.0023  Score=53.19  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+..   +...+....++... .+  |-.+. .++. +.+.....+++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT---EALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG---GGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence            468999999999999999999989999999888642   22223334454332 22  22221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        81 d~lv~~Ag~   89 (281)
T 3m1a_A           81 DVLVNNAGR   89 (281)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999984

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.41  E-value=0.0022  Score=54.85  Aligned_cols=104  Identities=9%  Similarity=0.116  Sum_probs=65.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC-CC-cEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL-GA-DEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~-~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+.+|||+|++|.+|..+++.+...|++|+++.+......+..+.+... +. ...+..+-.+.+.+.+..... ++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAH-PITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHS-CCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhcc-CCcEE
Confidence            4679999999999999999999889999999887544444433333221 21 223322222333444444322 49999


Q ss_pred             EecCCCcc------------------HHHHHHhcccC--CEEEEEcC
Q 021311          202 FNCVGGNS------------------ASKVLKFLSQG--GTMVTYGG  228 (314)
Q Consensus       202 ~d~~g~~~------------------~~~~~~~l~~~--G~~v~~g~  228 (314)
                      +++++...                  ...+++.++..  +++|.+++
T Consensus        83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  129 (341)
T 3enk_A           83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS  129 (341)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            99998531                  12344444433  58998875

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.41  E-value=0.0019  Score=53.63  Aligned_cols=34  Identities=12%  Similarity=0.175  Sum_probs=30.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|++|++|.++++.+...|++++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r   38 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGR   38 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            4689999999999999999888889999998885

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.41  E-value=0.0012  Score=54.75  Aligned_cols=35  Identities=17%  Similarity=0.095  Sum_probs=31.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999998999999888753

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.39  E-value=0.0012  Score=53.52  Aligned_cols=80  Identities=20%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcE-EE--ecChh-hHHH-HHHHhcCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADE-VF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      |+++||+|++|.+|..+++.+...|++++++...   ++++.+.    ++..+... .+  |-.+. .+++ +.+.....
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYAR---SAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999886432   3333322    22234322 22  22221 2222 22222223


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++|+++|.
T Consensus        78 g~id~li~~Ag~   89 (244)
T 1edo_A           78 GTIDVVVNNAGI   89 (244)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            359999999984

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.39  E-value=0.0014  Score=54.51  Aligned_cols=84  Identities=12%  Similarity=0.149  Sum_probs=51.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|.+++..+...|++++++.+.....++..+.++..+... .+  |-.+. .+++ +.+.....+++
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999998888889999988865432222233333334332 22  22221 2222 22221112359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus       113 d~li~~Ag~  121 (279)
T 3ctm_A          113 DVFVANAGV  121 (279)
T ss_dssp             SEEEECGGG
T ss_pred             CEEEECCcc
Confidence            999999873

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.00038  Score=57.00  Aligned_cols=80  Identities=16%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhC----CCcEEE--ecChh-hHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGL----GADEVF--TESQL-EVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~l----g~~~~~--~~~~~-~~~~-i~~~  191 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+.+    .+.    +....+  |-.+. .+++ +.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIAR----SKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEES----CHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHH
Confidence            5789999999999999999888888999988885    33333322    221    222233  32221 2222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        82 ~~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHHCCEEEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            2222359999999985

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.37  E-value=0.0011  Score=53.74  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=31.8

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ..++++||+|++|.+|.++++.+...|++++++.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   40 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            457899999999999999999999999999988864

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.37  E-value=0.00087  Score=55.62  Aligned_cols=83  Identities=23%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecCh-hhHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQ-LEVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~-~~~~~i~~~~~~~g~~d  199 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.. ..++..+.+...+.... +  |-.+ ..++++.+.....+++|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            578999999999999999999889999998887431 12222333344444322 2  2222 12233322222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus       109 ~lv~nAg~  116 (273)
T 3uf0_A          109 VLVNNAGI  116 (273)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999985

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.36  E-value=0.0029  Score=51.61  Aligned_cols=78  Identities=22%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCc-EEEecChhhHHHHHH----HhcCCCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGAD-EVFTESQLEVKNVKG----LLANLPEPA  199 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~-~~~~~~~~~~~~i~~----~~~~~g~~d  199 (314)
                      +++||+|++|++|.++++.+...|++++.+.+    +.++.+.+ .+++.. ..+..+-.+.+.+.+    .....|++|
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   76 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGR----RQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNID   76 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            47899999999999999988889999988875    34443333 334432 222222222222322    222334699


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        77 ~lvnnAg~   84 (248)
T 3asu_A           77 ILVNNAGL   84 (248)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.36  E-value=0.00062  Score=56.46  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .|+++||+|+++++|.++++.+...|++++++.+.....++..+.++..+....+   |-.+ ..+++ +.+.....|++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDV  104 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            5789999999999999999999899999887775311111122233444544332   2222 12222 22222233459


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus       105 D~lv~nAg~  113 (271)
T 4ibo_A          105 DILVNNAGI  113 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.36  E-value=0.0013  Score=56.38  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      ..+|||+|++|.+|..+++.+...|.+++++++......++...+   ...+... +..+-.+.+.+.+.....+ +|+|
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~-~~~Dl~d~~~l~~~~~~~~-~d~V   87 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAII-VYGLINEQEAMEKILKEHE-IDIV   87 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEE-EECCTTCHHHHHHHHHHTT-CCEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEE-EEeecCCHHHHHHHHhhCC-CCEE
Confidence            368999999999999999998888999999998643334444433   3345433 3333223445555555333 9999


Q ss_pred             EecCCCccH---HHHHHhcccCC---EEEE
Q 021311          202 FNCVGGNSA---SKVLKFLSQGG---TMVT  225 (314)
Q Consensus       202 ~d~~g~~~~---~~~~~~l~~~G---~~v~  225 (314)
                      |.+++....   ..+++.++..|   +++.
T Consensus        88 i~~a~~~n~~~~~~l~~aa~~~g~v~~~v~  117 (346)
T 3i6i_A           88 VSTVGGESILDQIALVKAMKAVGTIKRFLP  117 (346)
T ss_dssp             EECCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred             EECCchhhHHHHHHHHHHHHHcCCceEEee
Confidence            999997433   45666665444   6653

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.36  E-value=0.00073  Score=55.50  Aligned_cols=80  Identities=11%  Similarity=0.174  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+.+    +..+... .+  |-.+. .+++ +.+....
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGR----TKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999899999988875    34443332    2334332 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        81 ~g~id~lv~nAg~   93 (257)
T 3imf_A           81 FGRIDILINNAAG   93 (257)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999983

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.36  E-value=0.0013  Score=53.67  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE-ecChhhHHHHHHHhcCCCCCcEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      -.++++||+|++|++|.++++.+...|++++++.+    +++   .+++++....+ |- ....+.+.+...   ++|++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r----~~~---~~~~~~~~~~~~D~-~~~~~~~~~~~~---~iD~l   85 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICAR----NEE---LLKRSGHRYVVCDL-RKDLDLLFEKVK---EVDIL   85 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHH---HHHHTCSEEEECCT-TTCHHHHHHHSC---CCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC----CHH---HHHhhCCeEEEeeH-HHHHHHHHHHhc---CCCEE
Confidence            46789999999999999999988889999988875    332   23344433332 22 223344433332   39999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      ++++|.
T Consensus        86 v~~Ag~   91 (249)
T 1o5i_A           86 VLNAGG   91 (249)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.36  E-value=0.0011  Score=54.13  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=31.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGN   40 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            57899999999999999999999999999887543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.34  E-value=0.00035  Score=59.49  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCC--c-EEE--ecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGA--D-EVF--TESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~--~-~~~--~~~~~-~~~~-i~~~~  192 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.    .++.+.    +...+.  . ..+  |-.+. .++. +....
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~----~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIR----QDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            47899999999999999999888899999988863    333332    222332  2 222  22222 2222 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...+++|++++++|.
T Consensus        83 ~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           83 ARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHTCCEEEEEECCCC
T ss_pred             HhCCCCCEEEECCCc
Confidence            223359999999994

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.34  E-value=0.0009  Score=55.71  Aligned_cols=85  Identities=20%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecChh-hHHH-HHHHhcCCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      ..++++||+|+++++|.++++.+...|++++++.+.....++..+.++..+....+   |-.+. .+++ +.+.....|+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999888889999988885321111122233444544322   22221 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus       102 id~lv~nAg~  111 (279)
T 3sju_A          102 IGILVNSAGR  111 (279)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999985

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.33  E-value=0.001  Score=54.87  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC-Cc-EEE--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG-AD-EVF--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~-~~~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....++..+.++..+ .. ..+  |-.+ ..+++ +.+.....|+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999998999999888753111111122333444 22 222  2222 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        89 id~lvnnAg~   98 (262)
T 3pk0_A           89 IDVVCANAGV   98 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.33  E-value=0.00096  Score=54.77  Aligned_cols=84  Identities=14%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....++..+.++..+.... +  |-.+. .+++ +.+.....|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   90 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI   90 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999988888899998887532111112223344454432 2  22221 2222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        91 d~lv~nAg~   99 (256)
T 3gaf_A           91 TVLVNNAGG   99 (256)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.0014  Score=54.87  Aligned_cols=80  Identities=20%  Similarity=0.185  Sum_probs=48.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC---cEEEEecCCCCcHHHHHHH-HhC-----CCcE-EE--ecCh-hhHHHH-H
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI---HSINIIRDRAGSDEAKEKL-KGL-----GADE-VF--TESQ-LEVKNV-K  189 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~---~vi~~~~~~~~~~~~~~~~-~~l-----g~~~-~~--~~~~-~~~~~i-~  189 (314)
                      .++++||+|+++++|.++++.+...|+   +++.+.+    +.++.+.+ +.+     +... .+  |-.+ ..++++ .
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~  107 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAAR----RLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIE  107 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEES----CHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEEC----CHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence            468999999999999999887777777   7777764    44443333 211     3322 22  2222 223332 2


Q ss_pred             HHhcCCCCCcEEEecCCC
Q 021311          190 GLLANLPEPALGFNCVGG  207 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~  207 (314)
                      +.....|++|++++++|.
T Consensus       108 ~~~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          108 NLPQEFKDIDILVNNAGK  125 (287)
T ss_dssp             TSCGGGCSCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCc
Confidence            222233469999999984

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=0.00067  Score=54.42  Aligned_cols=95  Identities=17%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC-CCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL-GADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      .+|||+|++|.+|..+++.+...|.+++++.+.    +.+.   ..+ .....+..+-.+.+.+.+...+   +|+||.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~----~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~---~d~vi~~   74 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRH----PEKI---KIENEHLKVKKADVSSLDEVCEVCKG---ADAVISA   74 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSC----GGGC---CCCCTTEEEECCCTTCHHHHHHHHTT---CSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcC----cccc---hhccCceEEEEecCCCHHHHHHHhcC---CCEEEEe
Confidence            689999999999999999999999999988864    2211   112 1112232332234455555543   9999999


Q ss_pred             CCCcc------------HHHHHHhcccC--CEEEEEcCCC
Q 021311          205 VGGNS------------ASKVLKFLSQG--GTMVTYGGMS  230 (314)
Q Consensus       205 ~g~~~------------~~~~~~~l~~~--G~~v~~g~~~  230 (314)
                      +|...            ...+++.++..  .++|.+++..
T Consensus        75 a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           75 FNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             CCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            98641            13455555544  4899888543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.31  E-value=0.00071  Score=56.25  Aligned_cols=80  Identities=19%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHh---CCCcEEE--ecChh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKG---LGADEVF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~---lg~~~~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+. .++   .+....+  |-.+. .+++ +.+.....
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICAR----DAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELS  103 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            4689999999999999999999889999888875    3333322 222   2311222  22221 2222 22222223


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++++++|.
T Consensus       104 g~iD~lvnnAg~  115 (276)
T 2b4q_A          104 ARLDILVNNAGT  115 (276)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            359999999984

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.30  E-value=0.0012  Score=54.36  Aligned_cols=80  Identities=14%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+.    +++.+    .++..+... .+  |-.+. .+++ +.+....
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN----QKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999888899999888753    33332    223334332 22  22221 2222 2222222


Q ss_pred             C-CCCcEEEecCCC
Q 021311          195 L-PEPALGFNCVGG  207 (314)
Q Consensus       195 ~-g~~d~v~d~~g~  207 (314)
                      . +++|++++++|.
T Consensus        84 ~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           84 FHGKLNILVNNAGI   97 (260)
T ss_dssp             TTTCCCEEEECCCC
T ss_pred             cCCCCCEEEECCCC
Confidence            2 359999999984

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.30  E-value=0.0023  Score=52.27  Aligned_cols=84  Identities=19%  Similarity=0.268  Sum_probs=51.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC-CCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD-RAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~-~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+. ....++..+.++..+... .+  |..+. .+++ +.+.....++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999888899999988865 322222233334344332 22  22221 2222 2222222225


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++|+++|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.28  E-value=0.0031  Score=52.03  Aligned_cols=81  Identities=15%  Similarity=0.126  Sum_probs=50.3

Q ss_pred             CCCEEEEcCC--CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCc-EEE--ecChh-hHHH----HHHHh
Q 021311          124 SGDSIVQNGA--TSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGAD-EVF--TESQL-EVKN----VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~--~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~-~~~--~~~~~-~~~~----i~~~~  192 (314)
                      .++++||+|+  ++++|.++++.+...|++++++.+.   .+.. .+....++.. ..+  |-.+. .+++    +.+..
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD---RLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecC---hHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            4689999998  8999999999998899999888753   2222 2333444432 122  33222 2222    22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      +..+++|++++|+|.
T Consensus        83 g~~~~iD~lv~nAg~   97 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGF   97 (269)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             CCCCCceEEEECCcc
Confidence            211149999999984

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.28  E-value=0.0011  Score=55.14  Aligned_cols=80  Identities=19%  Similarity=0.246  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.    +++.+    .+++.+... .+  |-.+. .+++ +.+....
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG----EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998899999888753    33332    233334432 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        97 ~g~iD~lv~~Ag~  109 (277)
T 2rhc_B           97 YGPVDVLVNNAGR  109 (277)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            3359999999984

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.28  E-value=0.001  Score=56.58  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC-----CCcHHH----HHHHHhCCCcEEEecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR-----AGSDEA----KEKLKGLGADEVFTESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~-----~~~~~~----~~~~~~lg~~~~~~~~~~-~~~~-i~~~~  192 (314)
                      .++++||+|++|++|.++++.+...|++++++.+..     .++.++    .+.++..+.....|..+. ..+. +.+..
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            478999999999999999998888999998763210     012222    233344455445555442 2222 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...+++|++++++|.
T Consensus        88 ~~~g~iD~lVnnAG~  102 (319)
T 1gz6_A           88 DTFGRIDVVVNNAGI  102 (319)
T ss_dssp             HHTSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            233359999999984

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.28  E-value=0.0012  Score=54.16  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecChh-hHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      .++++||+|++|++|.++++.+...|++++++.+..    ++.+..++++. ..+  |-.+. .+++ +.+.....|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~----~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD   79 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP----EGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVD   79 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST----THHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh----hHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999998888999998888643    22223333332 333  22221 2222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        80 ~lv~~Ag~   87 (256)
T 2d1y_A           80 VLVNNAAI   87 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.28  E-value=0.003  Score=50.39  Aligned_cols=91  Identities=20%  Similarity=0.217  Sum_probs=60.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|||+|++|.+|..++..+...|.+++++.+    ++++...+...+...+ .|..+..  .  +...   ++|+||.|+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R----~~~~~~~~~~~~~~~~~~D~~d~~--~--~~~~---~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVR----DPQKAADRLGATVATLVKEPLVLT--E--ADLD---SVDAVVDAL   70 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHTCTTSEEEECCGGGCC--H--HHHT---TCSEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEe----cccccccccCCCceEEeccccccc--H--hhcc---cCCEEEECC
Confidence            5999999999999999999888999999985    4555544433343322 1222222  1  2222   499999999


Q ss_pred             CCc--------c---HHHHHHhcc-cCCEEEEEcC
Q 021311          206 GGN--------S---ASKVLKFLS-QGGTMVTYGG  228 (314)
Q Consensus       206 g~~--------~---~~~~~~~l~-~~G~~v~~g~  228 (314)
                      |..        .   ...+++.++ .++++|.+++
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            873        1   145556554 3478998864

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.27  E-value=0.0058  Score=50.27  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   41 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH   41 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            46899999999999999999999999999988864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.27  E-value=0.0038  Score=48.24  Aligned_cols=95  Identities=15%  Similarity=0.149  Sum_probs=64.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEE-ecChhhHHHHHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +++|+|+|+ |.+|..+++.++.. |.+++++.+    ++++.+.+++.|...+. |..+  .+.+.+.++-. ++|+++
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~----~~~~~~~~~~~g~~~~~gd~~~--~~~l~~~~~~~-~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISLGIEI----REEAAQQHRSEGRNVISGDATD--PDFWERILDTG-HVKLVL  110 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEES----CHHHHHHHHHTTCCEEECCTTC--HHHHHTBCSCC-CCCEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEEEEEC----CHHHHHHHHHCCCCEEEcCCCC--HHHHHhccCCC-CCCEEE
Confidence            678999998 99999999999998 999887774    67777788888876543 2222  22333331222 499999


Q ss_pred             ecCCCccH-H---HHHHhcccCCEEEEEc
Q 021311          203 NCVGGNSA-S---KVLKFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~~~-~---~~~~~l~~~G~~v~~g  227 (314)
                      .|++.... .   ...+.+.+..+++...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          111 LAMPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             EeCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99987543 2   3334445566777654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.27  E-value=0.0014  Score=54.28  Aligned_cols=80  Identities=13%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHHH-HHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKNV-KGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~i-~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+    .++..+... .+  |-.+. .++++ .+....
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSR----NEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999988875    333332    223334432 22  22221 22222 222221


Q ss_pred             C-CCCcEEEecCCC
Q 021311          195 L-PEPALGFNCVGG  207 (314)
Q Consensus       195 ~-g~~d~v~d~~g~  207 (314)
                      . +++|++++++|.
T Consensus        96 ~~g~id~lv~nAg~  109 (273)
T 1ae1_A           96 FDGKLNILVNNAGV  109 (273)
T ss_dssp             TTSCCCEEEECCCC
T ss_pred             cCCCCcEEEECCCC
Confidence            2 359999999985

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.27  E-value=0.0012  Score=53.92  Aligned_cols=80  Identities=16%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHHH-HHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKNV-KGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~i-~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+    .++..+... .+  |-.+. .++++ .+....
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADI----NAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988875    333332    223334332 22  22221 22221 111112


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        84 ~g~id~li~~Ag~   96 (253)
T 3qiv_A           84 FGGIDYLVNNAAI   96 (253)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2359999999985

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.0012  Score=55.03  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcEE-E--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADEV-F--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.    .++.+.    +...+.... +  |-.+. .+++ +.+....
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRT----RTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLK  102 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS----HHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999988999999988853    333332    233343322 2  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus       103 ~g~iD~lVnnAg~  115 (283)
T 3v8b_A          103 FGHLDIVVANAGI  115 (283)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            2359999999984

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.26  E-value=0.0015  Score=54.03  Aligned_cols=80  Identities=18%  Similarity=0.208  Sum_probs=50.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecC--hh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTES--QL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~--~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+.+ .++.....+..+  +. .+++ +.+.....|++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   83 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDK----DESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRL   83 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999988875    34443333 344332333222  21 2222 22221222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        84 D~lv~nAg~   92 (270)
T 1yde_A           84 DCVVNNAGH   92 (270)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999974

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.26  E-value=0.00094  Score=54.91  Aligned_cols=79  Identities=19%  Similarity=0.121  Sum_probs=49.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcE-EE--ecCh-hhHHHH-HHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADE-VF--TESQ-LEVKNV-KGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~-~~--~~~~-~~~~~i-~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+.    ++..+... .+  |-.+ ..++.+ .+....
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGR----HLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDRE   79 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999899999988875    3333322    22224332 22  2222 222222 222111


Q ss_pred             -CCCCcEEEecCC
Q 021311          195 -LPEPALGFNCVG  206 (314)
Q Consensus       195 -~g~~d~v~d~~g  206 (314)
                       .|++|++++++|
T Consensus        80 ~~g~id~lvnnAg   92 (260)
T 2qq5_A           80 QQGRLDVLVNNAY   92 (260)
T ss_dssp             HTTCCCEEEECCC
T ss_pred             cCCCceEEEECCc
Confidence             236999999994

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.25  E-value=0.0015  Score=52.97  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChhhHHH-HHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQLEVKN-VKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~~~~-i~~~~~~~g~~d~v~  202 (314)
                      ++++||+|++|++|.++++.+...|++++++.+.    .++  ..+.++...+ .|-.+...++ +.+.....+++|+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~----~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRN----PEE--AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS----CHH--HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC----HHH--HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999999999999999998899999988864    222  2223343221 2322222222 222222222599999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        76 ~~Ag~   80 (239)
T 2ekp_A           76 HAAAV   80 (239)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.25  E-value=0.003  Score=51.68  Aligned_cols=74  Identities=12%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecChh-hHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.....+          ....+  |-.+. .+++ +.+.....+++|
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD   89 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE----------GFLAVKCDITDTEQVEQAYKEIEETHGPVE   89 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT----------TSEEEECCTTSHHHHHHHHHHHHHHTCSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc----------cceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999998899999998886422111          12223  32222 2222 222222334599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        90 ~lv~nAg~   97 (253)
T 2nm0_A           90 VLIANAGV   97 (253)
T ss_dssp             EEEEECSC
T ss_pred             EEEECCCC
Confidence            99999984

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.24  E-value=0.0061  Score=44.85  Aligned_cols=96  Identities=9%  Similarity=-0.002  Sum_probs=67.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      -.++|+|.|. |.+|..+++.++..|.+++++..    ++++.+.+++.|...+. .+....+.+.+..-.  ++|+++.
T Consensus         6 ~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~----~~~~~~~~~~~g~~~i~-gd~~~~~~l~~a~i~--~ad~vi~   77 (140)
T 3fwz_A            6 ICNHALLVGY-GRVGSLLGEKLLASDIPLVVIET----SRTRVDELRERGVRAVL-GNAANEEIMQLAHLE--CAKWLIL   77 (140)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEES----CHHHHHHHHHTTCEEEE-SCTTSHHHHHHTTGG--GCSEEEE
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEEC----CHHHHHHHHHcCCCEEE-CCCCCHHHHHhcCcc--cCCEEEE
Confidence            3578999999 99999999999999999888884    77888888888875443 332222333332111  4999999


Q ss_pred             cCCCccH----HHHHHhcccCCEEEEEc
Q 021311          204 CVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      +++.+..    ....+.+.+..+++...
T Consensus        78 ~~~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           78 TIPNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             ECCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            9998643    23445566777777654

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.00099  Score=55.51  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCcEEE---ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGADEVF---TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~---~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    ++++.+.+    ...+....+   |-.+ ..++. +.+....
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTAR----NGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRR   82 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCS----CHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999998899999888775    33333322    223433322   2222 12222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        83 ~g~iD~lvnnAg~   95 (280)
T 3tox_A           83 FGGLDTAFNNAGA   95 (280)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999983

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.23  E-value=0.0016  Score=53.12  Aligned_cols=80  Identities=21%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    +.++.+.    ++..+... .+  |-.+. .+++ +.+....
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAAR----RVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999998889999988875    3333332    22334332 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        82 ~g~id~lv~nAg~   94 (247)
T 2jah_A           82 LGGLDILVNNAGI   94 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999984

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.23  E-value=0.00086  Score=55.04  Aligned_cols=81  Identities=15%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.....   .+...+++.. ..+  |-.+ ..+++ +.+.....|++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAG---EEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHV   82 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999888653221   2223334432 222  2222 12222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        83 d~lv~nAg~   91 (257)
T 3tpc_A           83 HGLVNCAGT   91 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.21  E-value=0.0016  Score=53.55  Aligned_cols=78  Identities=17%  Similarity=0.191  Sum_probs=49.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcE-EE--ecChh-hHHH----HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADE-VF--TESQL-EVKN----VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~-~~--~~~~~-~~~~----i~~~  191 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+.    +++.+    .++..+... .+  |-.+. ..++    +.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN----EYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999988899999888753    33322    223334332 22  22221 1222    2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      .++  ++|++++++|.
T Consensus        89 ~~~--~id~li~~Ag~  102 (266)
T 1xq1_A           89 FGG--KLDILINNLGA  102 (266)
T ss_dssp             HTT--CCSEEEEECCC
T ss_pred             hCC--CCcEEEECCCC
Confidence            212  59999999984

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.21  E-value=0.0018  Score=53.07  Aligned_cols=84  Identities=19%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+.....++..+.++..+... .+  |-.+. .+++ +.+.....+++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999888899999888853111111122333334332 22  22221 2222 22221112259


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+++.++|.
T Consensus        92 d~vi~~Ag~  100 (260)
T 3awd_A           92 DILVACAGI  100 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.21  E-value=0.0036  Score=58.00  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=52.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC---------CCcHHHHHHHHhCCCcEEEecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR---------AGSDEAKEKLKGLGADEVFTESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~---------~~~~~~~~~~~~lg~~~~~~~~~~-~~~~-i~~~~  192 (314)
                      .++.+||+|+++++|.+.++.+...|++|++..+..         ...++..+.++..|...+.|..+. ..++ +.+..
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            478999999999999999999999999998764321         001112233444565555555432 2222 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...|++|++++++|.
T Consensus        87 ~~~G~iDiLVnNAGi  101 (604)
T 2et6_A           87 KNFGTVHVIINNAGI  101 (604)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            222359999999984

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.19  E-value=0.0018  Score=53.59  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=51.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EEecC--hh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VFTES--QL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~~~~--~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   .++..    +.++..+... .+..+  +. .+++ +.+....
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS---NAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            57899999999999999998888999999988864   22222    2334445443 23222  21 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus       105 ~g~id~li~nAg~  117 (271)
T 4iin_A          105 DGGLSYLVNNAGV  117 (271)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2359999999985

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.19  E-value=0.0018  Score=53.57  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   +.+..    +.++..+.... +  |-.+. .+++ +.+....
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS---SAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER  103 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC---ChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999998999999888753   23322    23334454432 2  22221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus       104 ~g~id~lv~nAg~  116 (269)
T 4dmm_A          104 WGRLDVLVNNAGI  116 (269)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999985

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.18  E-value=0.0014  Score=52.83  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=49.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----H-hCCCcEE-EecChhhHHHHHHHh----cC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----K-GLGADEV-FTESQLEVKNVKGLL----AN  194 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~-~lg~~~~-~~~~~~~~~~i~~~~----~~  194 (314)
                      ++++||+|+++++|.+.++.+...|++++.+.+    +.++.+.+    . ..+.... +..+-.+.+.+.+..    ..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGAR----SVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLER   77 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHh
Confidence            688999999999999999999999999988885    33333222    1 2343322 222221222222211    11


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        78 ~g~id~li~~Ag~   90 (235)
T 3l77_A           78 FGDVDVVVANAGL   90 (235)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1359999999985

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.18  E-value=0.0012  Score=54.38  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHh-CCCc--EEE--ecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKG-LGAD--EVF--TESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~-lg~~--~~~--~~~~~-~~~~-i~~~~  192 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    +.++.+.    +.. .+..  ..+  |-.+. .+++ +.+..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCAR----DGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE   82 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999899999988875    3333322    222 3332  222  22222 2222 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...|++|++++++|.
T Consensus        83 ~~~g~id~lvnnAg~   97 (265)
T 3lf2_A           83 RTLGCASILVNNAGQ   97 (265)
T ss_dssp             HHHCSCSEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            222359999999984

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.17  E-value=0.0019  Score=53.67  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCC---c-EEE--ecChh-hHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGA---D-EVF--TESQL-EVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~---~-~~~--~~~~~-~~~~-i~~~  191 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    +.++.+.    +...+.   . ..+  |-.+. .+++ +.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGR----SSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST   80 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHH
Confidence            4689999999999999999988889999998875    3333332    223332   2 222  32222 2222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        81 ~~~~g~iD~lv~nAg~   96 (280)
T 1xkq_A           81 LKQFGKIDVLVNNAGA   96 (280)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            2222359999999984

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.17  E-value=0.0024  Score=54.29  Aligned_cols=84  Identities=11%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC----------CCCcHHHHHHHHhCCCcEEEe---cCh-hhHHH-H
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD----------RAGSDEAKEKLKGLGADEVFT---ESQ-LEVKN-V  188 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~----------~~~~~~~~~~~~~lg~~~~~~---~~~-~~~~~-i  188 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.          ....++..+.+...+....+.   -.+ ..+++ +
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  105 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI  105 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            57899999999999999999888899999888653          111222334444555443332   122 12222 2


Q ss_pred             HHHhcCCCCCcEEEecCCC
Q 021311          189 KGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~  207 (314)
                      .+.....|++|++++++|.
T Consensus       106 ~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          106 QTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            2222222359999999985

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.16  E-value=0.0061  Score=49.68  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=49.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecChh-hHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      .++++||+|++|++|.+.++.+...|++++++.+....        +..+. ..+  |-.+. .+++ +.+.....|++|
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--------~~~~~-~~~~~D~~d~~~~~~~~~~~~~~~g~id   76 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ--------EQYPF-ATEVMDVADAAQVAQVCQRLLAETERLD   76 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS--------SCCSS-EEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh--------hcCCc-eEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999988864221        22332 222  32222 2222 222222233599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        77 ~lv~~Ag~   84 (250)
T 2fwm_X           77 ALVNAAGI   84 (250)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.15  E-value=0.0021  Score=52.79  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=50.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+.    .++.+    .++..+.... +  |-.+. ..+. +.+....
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRK----QENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL   88 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999988899999888753    33322    2233343322 2  22221 2222 2222122


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        89 ~g~iD~lv~~Ag~  101 (260)
T 2zat_A           89 HGGVDILVSNAAV  101 (260)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999984

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.15  E-value=0.0015  Score=54.53  Aligned_cols=96  Identities=14%  Similarity=-0.028  Sum_probs=62.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|||+|++|.+|..+++.+... |.+++++++.    .++...+...+.. ++..+-.+.+.+.+...   ++|+||.++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~----~~~~~~~~~~~v~-~~~~D~~d~~~l~~~~~---~~d~vi~~a   73 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRN----VEKVPDDWRGKVS-VRQLDYFNQESMVEAFK---GMDTVVFIP   73 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESS----GGGSCGGGBTTBE-EEECCTTCHHHHHHHTT---TCSEEEECC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECC----HHHHHHhhhCCCE-EEEcCCCCHHHHHHHHh---CCCEEEEeC
Confidence            5899999999999999888777 8999999964    2222222223332 23222223345555554   399999999


Q ss_pred             CCcc--------HHHHHHhcccC--CEEEEEcCCC
Q 021311          206 GGNS--------ASKVLKFLSQG--GTMVTYGGMS  230 (314)
Q Consensus       206 g~~~--------~~~~~~~l~~~--G~~v~~g~~~  230 (314)
                      +...        ...+++.++..  +++|.+++..
T Consensus        74 ~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           74 SIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            8631        24555555544  4899888654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.14  E-value=0.0038  Score=51.28  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCc-EEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGAD-EVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~-~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    ++++.+.+ ..+... ..+  |-.+. .+++ +.+.....|+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~   86 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADL----DVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGG   86 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999889999988875    34443333 344322 222  32221 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        87 iD~lv~~Ag~   96 (263)
T 3ak4_A           87 FDLLCANAGV   96 (263)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.14  E-value=0.0014  Score=53.24  Aligned_cols=80  Identities=11%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCC--cEEE--ecC--h-hhHHHH-HHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGA--DEVF--TES--Q-LEVKNV-KGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~--~~~~--~~~--~-~~~~~i-~~~  191 (314)
                      .++++||+|+++++|.+.++.+...|++++++.+.    +++.+    .++..+.  ..++  |.+  + ..++++ .+.
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~   88 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT----EASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV   88 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC----HHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence            57899999999999999999998999999888853    33333    3333332  2222  221  1 122221 112


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        89 ~~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           89 EHEFGRLDGLLHNASI  104 (247)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence            1222359999999984

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.14  E-value=0.0022  Score=50.30  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=60.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      .+|||+|++|.+|..+++.+...|.+++++.+.    +.+.......+ ...+..+-.+.+.+.+...+   +|++|.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~----~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~---~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD----SSRLPSEGPRP-AHVVVGDVLQAADVDKTVAG---QDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC----GGGSCSSSCCC-SEEEESCTTSHHHHHHHHTT---CSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeC----hhhcccccCCc-eEEEEecCCCHHHHHHHHcC---CCEEEECc
Confidence            689999999999999999888889999988864    22211110111 22333332333455555543   99999999


Q ss_pred             CCcc-----------HHHHHHhccc--CCEEEEEcCC
Q 021311          206 GGNS-----------ASKVLKFLSQ--GGTMVTYGGM  229 (314)
Q Consensus       206 g~~~-----------~~~~~~~l~~--~G~~v~~g~~  229 (314)
                      +...           ...+++.++.  -+++|.+++.
T Consensus        76 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             cCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            8532           2344444433  3588888754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.14  E-value=0.0031  Score=52.46  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV-F--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    +.++.+.+ ..++.... +  |-.+ ..+++ +.+.....|+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDK----SAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGK   79 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC----CHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999999998875    44444333 44554432 2  2222 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        80 iD~lvnnAg~   89 (281)
T 3zv4_A           80 IDTLIPNAGI   89 (281)
T ss_dssp             CCEEECCCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.14  E-value=0.0018  Score=54.47  Aligned_cols=80  Identities=18%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCC---c-EEE--ecChh-hHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGA---D-EVF--TESQL-EVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~---~-~~~--~~~~~-~~~~-i~~~  191 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+    .+...+.   . ..+  |-.+. .+++ +.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  100 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGR----NEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT  100 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence            4689999999999999999998889999998875    333332    2233333   2 222  22222 2222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus       101 ~~~~g~iD~lvnnAG~  116 (297)
T 1xhl_A          101 LAKFGKIDILVNNAGA  116 (297)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            1222359999999984

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.13  E-value=0.0032  Score=51.81  Aligned_cols=83  Identities=16%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcC---CcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecCh-hhH----HHHHHH
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRG---IHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQ-LEV----KNVKGL  191 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g---~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~-~~~----~~i~~~  191 (314)
                      -.++++||+|++|.+|.++++.+...|   ++++++.+.....+ ..+.+...+.. ..+  |-.+ ..+    +.+.+.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH-HHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            356899999999999999999998889   88888887543332 22223222322 222  2222 122    223332


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      .+.. ++|++|+++|.
T Consensus        98 ~g~~-~id~li~~Ag~  112 (267)
T 1sny_A           98 TKDQ-GLNVLFNNAGI  112 (267)
T ss_dssp             HGGG-CCSEEEECCCC
T ss_pred             cCCC-CccEEEECCCc
Confidence            3311 39999999984

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.13  E-value=0.0059  Score=52.24  Aligned_cols=82  Identities=12%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC------cHHHHHHHHh-CCC-cEEEecChhhHHHHHHHhcCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG------SDEAKEKLKG-LGA-DEVFTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~------~~~~~~~~~~-lg~-~~~~~~~~~~~~~i~~~~~~~g  196 (314)
                      +++|||+|++|.+|..+++.+...|.+|+++.+....      ..+..+.+.. .+. ...+..+-.+.+.+.+.....+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence            4689999999999999998888889999998764322      2233333332 121 1233222222334444433223


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                       +|+||.+++.
T Consensus        82 -~d~vih~A~~   91 (348)
T 1ek6_A           82 -FMAVIHFAGL   91 (348)
T ss_dssp             -EEEEEECCSC
T ss_pred             -CCEEEECCCC
Confidence             9999999985

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.13  E-value=0.0067  Score=49.48  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhC--CCc-EEE--ecCh--hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGL--GAD-EVF--TESQ--LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~l--g~~-~~~--~~~~--~~~~~-i~~~~~~  194 (314)
                      .++++||+|++|++|.++++.+...|++ ++++.+..  ..+..+.+.+.  +.. ..+  |-.+  ..+++ +.+....
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~--~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE--NPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC--CHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc--hHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            4689999999999999999999899997 77666542  22333333332  222 122  3222  22222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        82 ~g~id~lv~~Ag~   94 (254)
T 1sby_A           82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            2359999999984

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.12  E-value=0.0048  Score=45.30  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=58.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +++|+|+|+ |.+|..+++.+...|.+++++.+    ++++.+.+++.+... +..+..+.+.+.+....  ++|+++.|
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~----~~~~~~~~~~~~~~~-~~~d~~~~~~l~~~~~~--~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDI----NEEKVNAYASYATHA-VIANATEENELLSLGIR--NFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEES----CHHHHHTTTTTCSEE-EECCTTCHHHHHTTTGG--GCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHhCCEE-EEeCCCCHHHHHhcCCC--CCCEEEEC
Confidence            568999998 99999999999999998877663    556655555555533 32222223334332111  49999999


Q ss_pred             CCCc-cH----HHHHHhcccCCEEEEEc
Q 021311          205 VGGN-SA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~~-~~----~~~~~~l~~~G~~v~~g  227 (314)
                      ++.+ ..    ....+.+.+. +++...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~ii~~~  104 (144)
T 2hmt_A           78 IGANIQASTLTTLLLKELDIP-NIWVKA  104 (144)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CCCchHHHHHHHHHHHHcCCC-eEEEEe
Confidence            9975 32    2223334443 666544

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.12  E-value=0.018  Score=45.91  Aligned_cols=116  Identities=14%  Similarity=0.040  Sum_probs=69.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|||.|+ |.+|...++.+...|++++++...  ..++-.+++...+. ..+. .....+.+    .   ++|+||-
T Consensus        30 ~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~--~~~~l~~l~~~~~i-~~i~-~~~~~~dL----~---~adLVIa   97 (223)
T 3dfz_A           30 KGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPT--VSAEINEWEAKGQL-RVKR-KKVGEEDL----L---NVFFIVV   97 (223)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSS--CCHHHHHHHHTTSC-EEEC-SCCCGGGS----S---SCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHcCCc-EEEE-CCCCHhHh----C---CCCEEEE
Confidence            5799999999 999999999999999999877743  23333333333222 2221 11111111    1   4999999


Q ss_pred             cCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceec-ceEEEEEe
Q 021311          204 CVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGFW  252 (314)
Q Consensus       204 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~  252 (314)
                      +++.+..+..+...+..|..|.....+. ..++..++++.+ .+++.-+.
T Consensus        98 AT~d~~~N~~I~~~ak~gi~VNvvD~p~-~~~f~~Paiv~rg~l~iaIST  146 (223)
T 3dfz_A           98 ATNDQAVNKFVKQHIKNDQLVNMASSFS-DGNIQIPAQFSRGRLSLAIST  146 (223)
T ss_dssp             CCCCTHHHHHHHHHSCTTCEEEC------CCSEECCEEEEETTEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHhCCCEEEEeCCcc-cCeEEEeeEEEeCCEEEEEEC
Confidence            9999888655555455888877763332 234444554444 45555443

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.12  E-value=0.00019  Score=59.16  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=49.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecCh-hhHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQ-LEVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~-~~~~~-i~~~~~~~g~~d  199 (314)
                      .|+++||+|+++++|++.++.+...|++|+++.+...   +      .+.....+  |-.+ +..+. +.+.....|++|
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~---~------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   80 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP---E------GLPEELFVEADLTTKEGCAIVAEATRQRLGGVD   80 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC---T------TSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCS
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch---h------CCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            6899999999999999999999999999998886421   1      12222222  2222 22222 222233334699


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        81 ilVnnAG~   88 (261)
T 4h15_A           81 VIVHMLGG   88 (261)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.12  E-value=0.0018  Score=54.04  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|++|++|.++++.+...|++++++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r   60 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTAR   60 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence            4689999999999999999988889999998885

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.12  E-value=0.0033  Score=51.58  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV-F--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|+++++|.++++.+...|++++.+.+    ++++.+.+ ++++.... +  |-.+ ..+++ +.+.....++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   83 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDR----DKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGK   83 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999899999988885    44444333 44554322 2  2222 12222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        84 id~li~~Ag~   93 (261)
T 3n74_A           84 VDILVNNAGI   93 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999984

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.11  E-value=0.0042  Score=50.99  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~~  198 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+.....   .+..++++... .+  |-.+. .+++ +.+.....+++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG---EAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH---HHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhH---HHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            468999999999999999999988999999888653222   22233344332 22  22221 2222 22221122359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        88 d~li~~Ag~   96 (265)
T 2o23_A           88 DVAVNCAGI   96 (265)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999984

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.11  E-value=0.0014  Score=53.96  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=49.3

Q ss_pred             CCCEEEEcCCCc-HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC-c-EEE--ecCh-hhHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATS-IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA-D-EVF--TESQ-LEVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g-~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~-~~~--~~~~-~~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++| ++|.++++.+...|++++++.+.....++..+.+++.+. . ..+  |-.+ ..+++ +.+.....+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            578999999975 799999988888899998888532111112222333332 2 222  2222 12222 222222223


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus       101 ~id~li~~Ag~  111 (266)
T 3o38_A          101 RLDVLVNNAGL  111 (266)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            59999999984

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.10  E-value=0.0067  Score=52.03  Aligned_cols=173  Identities=10%  Similarity=0.129  Sum_probs=92.3

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHc-CC-cEEEEecCCCCcHHHHHHH-HhCC--CcEEEecChhhHHHHHHHhcCCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHR-GI-HSINIIRDRAGSDEAKEKL-KGLG--ADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~-g~-~vi~~~~~~~~~~~~~~~~-~~lg--~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      -.+++|||+|++|.+|..+++.+... |. +++++.+    ++.+...+ ..+.  ....+..+-.+.+.+.+...   +
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r----~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~   91 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR----DELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE---G   91 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES----CHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT---T
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC----ChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh---c
Confidence            35789999999999999999888877 98 7877775    34443332 2222  11222222223345555544   3


Q ss_pred             CcEEEecCCCccH------------------HHHHHhcccC--CEEEEEcCCCCC-Cccccc----------ccce----
Q 021311          198 PALGFNCVGGNSA------------------SKVLKFLSQG--GTMVTYGGMSKK-PITVST----------SAFI----  242 (314)
Q Consensus       198 ~d~v~d~~g~~~~------------------~~~~~~l~~~--G~~v~~g~~~~~-~~~~~~----------~~~~----  242 (314)
                      +|+||.+++....                  ..+++.+.+.  +++|.+++.... +.+...          ....    
T Consensus        92 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~  171 (344)
T 2gn4_A           92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAANPINLYGATKLCSDKLFVSANNFKG  171 (344)
T ss_dssp             CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSSCCSHHHHHHHHHHHHHHHGGGCCC
T ss_pred             CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999986421                  2334444333  589988753211 111000          0010    


Q ss_pred             ecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCC--cccc----c-eeeccccHHHHHHHHhccCCCC
Q 021311          243 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGK--LKYD----M-ELVPFNNFQTALSKALGLHGSQ  307 (314)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~~~~----~-~~~~~~~~~~a~~~~~~~~~~~  307 (314)
                      ..++++.....+.++....     ..+..+.+.+.+|.  +...    . .....+|+.+++..+......|
T Consensus       172 ~~g~~~~~vRpg~v~g~~~-----~~i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~~~~~g  238 (344)
T 2gn4_A          172 SSQTQFSVVRYGNVVGSRG-----SVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRMHGG  238 (344)
T ss_dssp             SSCCEEEEECCCEETTCTT-----SHHHHHHHHHHHTCCCEEESCTTCEEEEECHHHHHHHHHHHHHHCCSS
T ss_pred             CCCcEEEEEEeccEECCCC-----CHHHHHHHHHHcCCCceEEeCCCeEEeeEEHHHHHHHHHHHHhhccCC
Confidence            1345555554444433211     12344555566665  3221    1 2356778777776666544333

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.10  E-value=0.0029  Score=51.96  Aligned_cols=35  Identities=23%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   37 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46899999999999999999998899999888754

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.10  E-value=0.0019  Score=52.68  Aligned_cols=76  Identities=14%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHH-HHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKN-VKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~-i~~~~~~~g~~d~v  201 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.....+    .+.  +  ...|-.+. .+++ +.+.....+++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~----~~~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~l   85 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK----GLF--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVL   85 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT----TSE--E--EECCTTCHHHHHHHHHHHHHHHSSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH----Hhc--C--eeccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999999999999999988889999998886432111    110  1  22333332 2222 22221122359999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      ++++|.
T Consensus        86 v~~Ag~   91 (247)
T 1uzm_A           86 VSNAGL   91 (247)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            999985

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.10  E-value=0.0035  Score=51.70  Aligned_cols=80  Identities=20%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-----HhCCCcE-EE--ecChh-hHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-----KGLGADE-VF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-----~~lg~~~-~~--~~~~~-~~~~-i~~~~~  193 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    +.++.+.+     +..+... .+  |-.+. .++. +.+...
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   95 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR----NLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   95 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999889999988875    33333222     2224332 22  32221 2222 222212


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus        96 ~~g~iD~lvnnAg~  109 (267)
T 1vl8_A           96 KFGKLDTVVNAAGI  109 (267)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            22359999999984

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.09  E-value=0.0027  Score=52.77  Aligned_cols=82  Identities=15%  Similarity=0.108  Sum_probs=52.5

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecC--h-hhHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTES--Q-LEVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~--~-~~~~~-i~~~~~~~g  196 (314)
                      .++++||+|++  +++|.++++.+...|++++++.+..  ..+..+.+ ...+....+..+  + ..+++ +.+.....+
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            57899999998  5599999988888999998888653  23444444 344433343332  2 12222 222222234


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus       103 ~id~li~nAg~  113 (280)
T 3nrc_A          103 GLDAIVHSIAF  113 (280)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            59999999985

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.08  E-value=0.0025  Score=52.95  Aligned_cols=84  Identities=11%  Similarity=0.073  Sum_probs=52.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC--------cHHHH----HHHHhCCCcEEE---ecChh-hHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG--------SDEAK----EKLKGLGADEVF---TESQL-EVKN  187 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~--------~~~~~----~~~~~lg~~~~~---~~~~~-~~~~  187 (314)
                      .++++||+|+++++|.++++.+...|++++++.+....        +.++.    +.++..+....+   |-.+. .+++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            47899999999999999999999999999888764211        12222    233445544322   22221 2222


Q ss_pred             -HHHHhcCCCCCcEEEecCCC
Q 021311          188 -VKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       188 -i~~~~~~~g~~d~v~d~~g~  207 (314)
                       +.+.....|++|++++++|.
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           89 FVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence             22222222359999999984

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.08  E-value=0.0033  Score=51.62  Aligned_cols=34  Identities=15%  Similarity=0.061  Sum_probs=30.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|++|.+|..++..+...|++++++.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r   39 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDL   39 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            4689999999999999999888889999988875

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.07  E-value=0.003  Score=51.76  Aligned_cols=83  Identities=10%  Similarity=0.061  Sum_probs=49.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC--cHHHHHHHHhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG--SDEAKEKLKGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~--~~~~~~~~~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      ++++||+|++|++|.++++.+...|++++++.+....  .++..+.++..+... .+  |-.+. .+++ +.+.....|+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999998888889999888754211  011112233334332 22  22221 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        82 iD~lv~nAg~   91 (258)
T 3a28_C           82 FDVLVNNAGI   91 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.07  E-value=0.0026  Score=53.46  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=52.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC--------CcHHHH----HHHHhCCCcEEE---ecChh-hHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA--------GSDEAK----EKLKGLGADEVF---TESQL-EVKN  187 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~--------~~~~~~----~~~~~lg~~~~~---~~~~~-~~~~  187 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.+.        ++.++.    +.++..+.....   |-.+. .+++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            5789999999999999999999999999998875311        113332    233445554322   22221 2222


Q ss_pred             -HHHHhcCCCCCcEEEecCCC
Q 021311          188 -VKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       188 -i~~~~~~~g~~d~v~d~~g~  207 (314)
                       +.+.....|++|++++++|.
T Consensus       107 ~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          107 AVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHhCCCCEEEECCCC
Confidence             22222222359999999984

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.07  E-value=0.0051  Score=50.53  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC----CCcE-EE--ecChh-hHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL----GADE-VF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l----g~~~-~~--~~~~~-~~~~-i~~~~~  193 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+.+ .++    +... .+  |-.+. .+++ +.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVAR----QVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS   81 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998889999988875    33333222 222    4332 22  22222 2222 222212


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus        82 ~~g~id~lv~~Ag~   95 (263)
T 3ai3_A           82 SFGGADILVNNAGT   95 (263)
T ss_dssp             HHSSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence            22359999999984

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.07  E-value=0.0029  Score=51.14  Aligned_cols=79  Identities=19%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcE-EE--ecCh-hhHHH-HHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADE-VF--TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~-~~--~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      ++++||+|+++++|.++++.+...|++++++.+    ++++.+.+ ..++... .+  |-.+ ..+++ +.+.....|++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   78 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGR----RYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLP   78 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999988889999998885    34443333 2333221 22  2222 12222 22222222359


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        79 d~lvnnAg~   87 (235)
T 3l6e_A           79 ELVLHCAGT   87 (235)
T ss_dssp             SEEEEECCC
T ss_pred             cEEEECCCC
Confidence            999999985

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.06  E-value=0.0053  Score=51.90  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      ++|||+|++|.+|..+++.+...|.+++++++......+....+...+... +..+-.+.+.+.+...+   +|+||.++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~-v~~Dl~d~~~l~~a~~~---~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAII-VKGELDEHEKLVELMKK---VDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEE-EECCTTCHHHHHHHHTT---CSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEE-EEecCCCHHHHHHHHcC---CCEEEECC
Confidence            579999999999999999888889999999876432222223333445443 32332233455555543   99999999


Q ss_pred             CCcc---HHHHHHhcccC---CEEE
Q 021311          206 GGNS---ASKVLKFLSQG---GTMV  224 (314)
Q Consensus       206 g~~~---~~~~~~~l~~~---G~~v  224 (314)
                      +...   ...+++.++..   .++|
T Consensus        88 ~~~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           88 AFPQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             CGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             chhhhHHHHHHHHHHHhcCCCCEEE
Confidence            8532   34555555433   4666

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.06  E-value=0.0018  Score=53.41  Aligned_cols=80  Identities=18%  Similarity=0.067  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhC--CCcE-EE--ecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGL--GADE-VF--TESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~l--g~~~-~~--~~~~~-~~~~-i~~~~  192 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    ++++.+.+    .+.  +... .+  |-.+. .+++ +.+..
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   87 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDV----SSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT   87 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            4789999999999999999988889999998875    33333222    221  3332 22  32222 2222 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...|++|++++++|.
T Consensus        88 ~~~g~id~lv~nAg~  102 (267)
T 1iy8_A           88 ERFGRIDGFFNNAGI  102 (267)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence            222359999999984

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.06  E-value=0.0046  Score=49.97  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .++++||+|++|.+|..+++.+...|+  +++++.+......+    ...-+. ..+..+-.+.+.+.+...   ++|++
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~----~~~~~~-~~~~~D~~d~~~~~~~~~---~~d~v   88 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE----EAYKNV-NQEVVDFEKLDDYASAFQ---GHDVG   88 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS----GGGGGC-EEEECCGGGGGGGGGGGS---SCSEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc----cccCCc-eEEecCcCCHHHHHHHhc---CCCEE
Confidence            368999999999999999998888899  89888865322111    000111 222222222234444443   39999


Q ss_pred             EecCCCcc---------------HHHHHHhccc--CCEEEEEcCCCC
Q 021311          202 FNCVGGNS---------------ASKVLKFLSQ--GGTMVTYGGMSK  231 (314)
Q Consensus       202 ~d~~g~~~---------------~~~~~~~l~~--~G~~v~~g~~~~  231 (314)
                      |+|+|...               ...+++.+..  .+++|.+++...
T Consensus        89 i~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~  135 (242)
T 2bka_A           89 FCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  135 (242)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             EECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence            99998632               1233444433  369999986543

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.06  E-value=0.0043  Score=52.76  Aligned_cols=83  Identities=14%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC-CCcHHHHHHH----HhCCCcE-EE--ecCh-hhHHH-HHHHhcC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR-AGSDEAKEKL----KGLGADE-VF--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~-~~~~~~~~~~----~~lg~~~-~~--~~~~-~~~~~-i~~~~~~  194 (314)
                      ++++||+|++|++|.++++.+...|++++++.+.. ..+.++.+.+    +..+... .+  |-.+ ..+++ +.+....
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~   84 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGE   84 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999887642 2233333333    2234332 22  2222 12222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        85 ~g~iD~lVnnAG~   97 (324)
T 3u9l_A           85 DGRIDVLIHNAGH   97 (324)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2359999999994

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.06  E-value=0.003  Score=51.88  Aligned_cols=84  Identities=20%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcE-EE--ecChh-hHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADE-VF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~-~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+......+..+.+ ...+... .+  |-.+. .+++ +.+.....++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4678999999999999999988889999998886432222222222 2223332 22  22221 2222 2222222335


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.05  E-value=0.0027  Score=52.83  Aligned_cols=82  Identities=18%  Similarity=0.188  Sum_probs=51.4

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecChh-hHHH-HHHHhc
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~  193 (314)
                      -.++++||+|+++++|.++++.+...|++++++.+.   ++++.    +.+...+.... +  |-.+. .+++ +.+...
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG---DAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA  103 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---CHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999888743   23322    23334454432 2  32222 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus       104 ~~g~iD~lvnnAg~  117 (280)
T 4da9_A          104 EFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHSCCCEEEEECC-
T ss_pred             HcCCCCEEEECCCc
Confidence            22359999999985

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.05  E-value=0.0029  Score=51.36  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=50.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----Hh-CCCcE-EE--ecChh-hHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KG-LGADE-VF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~-lg~~~-~~--~~~~~-~~~~-i~~~~~  193 (314)
                      .++++||+|++|.+|..+++.+...|++++++.+    +.++.+.+    .. .+... .+  |..+. .+++ +.+...
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGT----SGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYN   81 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----ChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4689999999999999999988889999998885    33333222    11 23332 22  22221 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+++|++|.++|.
T Consensus        82 ~~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           82 LVDGIDILVNNAGI   95 (248)
T ss_dssp             HSSCCSEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence            22359999999984

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.05  E-value=0.0018  Score=54.42  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=30.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r   50 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASR   50 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4689999999999999999988889999988875

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.05  E-value=0.0028  Score=52.66  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=51.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEE-E--ecCh-hhHHHHHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEV-F--TESQ-LEVKNVKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~-~--~~~~-~~~~~i~~~~~~~g~~  198 (314)
                      .++++||+|+++++|.++++.+...|++++++.+    +.++.+. ..+++.... +  |-.+ ..++++.+.....+++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~i  104 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADL----AAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRL  104 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC----ChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999988889999988875    3444333 344554432 2  2222 2233333333334469


Q ss_pred             cEEEecC
Q 021311          199 ALGFNCV  205 (314)
Q Consensus       199 d~v~d~~  205 (314)
                      |+++.++
T Consensus       105 d~lv~~a  111 (281)
T 3ppi_A          105 RYAVVAH  111 (281)
T ss_dssp             EEEEECC
T ss_pred             CeEEEcc
Confidence            9999983

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.05  E-value=0.0094  Score=55.20  Aligned_cols=82  Identities=11%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEec-Ch-hhHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTE-SQ-LEVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~-~~~~~-i~~~~~~~g~~d~  200 (314)
                      .|+.+||+|+++++|.+.++.+...|++|++..+.  ..++..+.+++.|...+... +- ...++ +.+.....|++|+
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~--~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDi  398 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK--DATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDI  398 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS--CCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc--cHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCE
Confidence            36889999999999999999999999998876532  13344455555565443322 22 22222 2222222236999


Q ss_pred             EEecCCC
Q 021311          201 GFNCVGG  207 (314)
Q Consensus       201 v~d~~g~  207 (314)
                      +++++|.
T Consensus       399 LVnNAGi  405 (604)
T 2et6_A          399 LVNNAGI  405 (604)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.04  E-value=0.0025  Score=52.92  Aligned_cols=80  Identities=19%  Similarity=0.188  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHH----hCCCcE-EE--ecChh-hHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLK----GLGADE-VF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~----~lg~~~-~~--~~~~~-~~~~-i~~~~~  193 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.    .++.+ ...    ..+... .+  |-.+. .+++ +.+...
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~  101 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS----LPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC----HHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999888753    33322 221    224332 22  22222 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus       102 ~~g~id~lv~nAg~  115 (277)
T 4fc7_A          102 EFGRIDILINCAAG  115 (277)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCcC
Confidence            22359999999983

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.03  E-value=0.0042  Score=52.94  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-----CCCc-EEE-ecChhhHHHHHHHhcC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-----LGAD-EVF-TESQLEVKNVKGLLAN  194 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-----lg~~-~~~-~~~~~~~~~i~~~~~~  194 (314)
                      ...+++|||+|++|.+|..++..+...|.+|+++.+.    ..+.+.+..     .+.. ..+ ..+-.+.+.+.+... 
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-   82 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS----ASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK-   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS----HHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT-
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC----cccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc-
Confidence            3467899999999999999998888889999988863    333322221     1222 222 122111223333332 


Q ss_pred             CCCCcEEEecCCCcc---------------HHHHHHhcc--c-CCEEEEEcCC
Q 021311          195 LPEPALGFNCVGGNS---------------ASKVLKFLS--Q-GGTMVTYGGM  229 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~---------------~~~~~~~l~--~-~G~~v~~g~~  229 (314)
                        ++|+||.+++...               ...+++.+.  . .+++|.+++.
T Consensus        83 --~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~  133 (342)
T 1y1p_A           83 --GAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST  133 (342)
T ss_dssp             --TCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCG
T ss_pred             --CCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccH
Confidence              3999999998531               123444443  2 3799998854

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.02  E-value=0.0023  Score=52.95  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCC---cEEE--ecChh-hHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGA---DEVF--TESQL-EVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~---~~~~--~~~~~-~~~~-i~~~~~~~  195 (314)
                      .++++||+|++|.+|.++++.+...|++++++.+    +.++.+ ....++.   ...+  |-.+. .+++ +.+.....
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   90 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADI----ADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH   90 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC----ChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999988889999988875    333322 2233322   1222  22221 2222 11111112


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++++++|.
T Consensus        91 ~~id~li~~Ag~  102 (278)
T 2bgk_A           91 GKLDIMFGNVGV  102 (278)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            259999999984

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.02  E-value=0.0027  Score=52.28  Aligned_cols=98  Identities=15%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++..++..+.+..---.|++++|.|.++.+|..+++++...|+++.++-+.   +.                   
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~---T~-------------------  196 (286)
T 4a5o_A          139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF---TR-------------------  196 (286)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT---CS-------------------
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---Cc-------------------
Confidence            34566666666666664333589999999997789999999999999998766521   10                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          .+.+.+.   ..|+++.++|.+.+ ---++++++..++.+|...
T Consensus       197 ----~L~~~~~---~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          197 ----DLADHVS---RADLVVVAAGKPGL-VKGEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             ----CHHHHHH---TCSEEEECCCCTTC-BCGGGSCTTCEEEECCSCS
T ss_pred             ----CHHHHhc---cCCEEEECCCCCCC-CCHHHcCCCeEEEEecccc
Confidence                1222222   39999999998644 1125679999999998554

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.02  E-value=0.0046  Score=50.30  Aligned_cols=81  Identities=22%  Similarity=0.247  Sum_probs=51.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   +.++.    +.++..+.... +  |-.+ ..+++ +.+....
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAG---SKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999887753   32332    23344454432 2  2222 12222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 3osu_A           80 FGSLDVLVNNAGI   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2359999999985

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.01  E-value=0.0089  Score=51.44  Aligned_cols=100  Identities=18%  Similarity=0.208  Sum_probs=62.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC-hhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES-QLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +.+|||+|++|.+|..+++.+...|.+++++++....  .....+.......++..+ -.+.+.+.+...+   +|+||.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~--~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~---~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG--LIAEELQAIPNVTLFQGPLLNNVPLMDTLFEG---AHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS--HHHHHHHTSTTEEEEESCCTTCHHHHHHHHTT---CSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCCh--hhHHHHhhcCCcEEEECCccCCHHHHHHHHhc---CCEEEE
Confidence            5789999999999999998888889999998875321  111233333222333333 2233445555443   999998


Q ss_pred             cCCCc--c----HHHHHHhccc-C--CEEEEEcCC
Q 021311          204 CVGGN--S----ASKVLKFLSQ-G--GTMVTYGGM  229 (314)
Q Consensus       204 ~~g~~--~----~~~~~~~l~~-~--G~~v~~g~~  229 (314)
                      +++..  .    ...+++.++. +  +++|.+++.
T Consensus        80 ~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            77653  1    1344444433 3  599998864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.99  E-value=0.0023  Score=52.68  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      .+.|+++..+...+.+..---.|++++|.|+++.+|..+++++...|+++.++-+.   +                    
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---t--------------------  195 (285)
T 3l07_A          139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---T--------------------  195 (285)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---C--------------------
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---c--------------------
Confidence            45566666666666664334589999999997779999999999999987655421   1                    


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      .   .+.+.+.   ..|+++.++|.+.+ ---++++++..++.+|..
T Consensus       196 ~---~L~~~~~---~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          196 T---DLKSHTT---KADILIVAVGKPNF-ITADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             S---SHHHHHT---TCSEEEECCCCTTC-BCGGGSCTTCEEEECCCE
T ss_pred             h---hHHHhcc---cCCEEEECCCCCCC-CCHHHcCCCcEEEEeccc
Confidence            0   1222233   39999999998644 112567999999999844

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.99  E-value=0.0011  Score=54.83  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   61 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRA   61 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999888899998877753

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.98  E-value=0.0036  Score=52.16  Aligned_cols=35  Identities=17%  Similarity=0.106  Sum_probs=31.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999999999999999999999999888653

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.98  E-value=0.0031  Score=52.19  Aligned_cols=83  Identities=12%  Similarity=0.166  Sum_probs=51.0

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecCh-hhHHH-HHHHh
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQ-LEVKN-VKGLL  192 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~-~~~~~-i~~~~  192 (314)
                      ...++++||+|++|++|.++++.+...|++++++...   +.+..+    .+.+.+.... +  |-.+ ..+++ +.+..
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   99 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAA---NREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVD   99 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC---ChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999999999999877543   333322    2334444322 2  2222 12222 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...+++|++++++|.
T Consensus       100 ~~~g~id~li~nAg~  114 (272)
T 4e3z_A          100 RQFGRLDGLVNNAGI  114 (272)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhCCCCCEEEECCCC
Confidence            222359999999984

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.97  E-value=0.0061  Score=50.67  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhC-CCcEE-E--ecCh-hhHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGL-GADEV-F--TESQ-LEVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~l-g~~~~-~--~~~~-~~~~~-i~~~~~  193 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   ..++.+    .+... +.... +  |-.+ ..+++ +.+...
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG---APDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC---CHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC---ChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999888753   223222    22332 33322 2  2222 12222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus       101 ~~g~iD~lv~nAg~  114 (281)
T 3v2h_A          101 RFGGADILVNNAGV  114 (281)
T ss_dssp             HTSSCSEEEECCCC
T ss_pred             HCCCCCEEEECCCC
Confidence            33459999999985

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.97  E-value=0.0021  Score=53.22  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|++|++|.++++.+...|++++++.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r   43 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYR   43 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4689999999999999999988889999998885

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.96  E-value=0.0028  Score=52.91  Aligned_cols=76  Identities=11%  Similarity=0.029  Sum_probs=49.1

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhC----CCc-EEEecChhhHHHHHHHhcCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGL----GAD-EVFTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~l----g~~-~~~~~~~~~~~~i~~~~~~~g  196 (314)
                      -.++++||+|++|++|.+++..+...|++++++.+    +.++.+. ++.+    +.. ...|..+.  +.+.+...   
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R----~~~~~~~l~~~~~~~~~~~~~~~D~~~~--~~~~~~~~---  187 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGR----KLDKAQAAADSVNKRFKVNVTAAETADD--ASRAEAVK---  187 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHHHHHTCCCEEEECCSH--HHHHHHTT---
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEecCCCH--HHHHHHHH---
Confidence            36799999998899999999999999999766664    3333332 2222    222 22333322  23444333   


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      .+|++++|+|.
T Consensus       188 ~~DvlVn~ag~  198 (287)
T 1lu9_A          188 GAHFVFTAGAI  198 (287)
T ss_dssp             TCSEEEECCCT
T ss_pred             hCCEEEECCCc
Confidence            38999999974

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.96  E-value=0.0037  Score=52.98  Aligned_cols=84  Identities=20%  Similarity=0.173  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC--------CcHHHHH----HHHhCCCcEEE---ecChh-hHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA--------GSDEAKE----KLKGLGADEVF---TESQL-EVKN  187 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~--------~~~~~~~----~~~~lg~~~~~---~~~~~-~~~~  187 (314)
                      .++++||+|+++++|.++++.+...|++++++.+...        .+.++.+    .+...+....+   |-.+. .+++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            5789999999999999999999999999998864311        1133322    23344544322   22221 2222


Q ss_pred             -HHHHhcCCCCCcEEEecCCC
Q 021311          188 -VKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       188 -i~~~~~~~g~~d~v~d~~g~  207 (314)
                       +.+.....|++|++++++|.
T Consensus       125 ~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          125 VVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCC
Confidence             22222222359999999984

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.96  E-value=0.003  Score=51.91  Aligned_cols=80  Identities=11%  Similarity=0.126  Sum_probs=50.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcE-EE--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADE-VF--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~-~~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   .++..+.+.    ..+... .+  |-.+. .+++ +.+....
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS---DTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCC---ChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999888899999988764   333333332    223222 22  22221 2222 2222222


Q ss_pred             CCCCcEEEecCC
Q 021311          195 LPEPALGFNCVG  206 (314)
Q Consensus       195 ~g~~d~v~d~~g  206 (314)
                      .+++|++++++|
T Consensus        83 ~g~id~lv~~Ag   94 (264)
T 3i4f_A           83 FGKIDFLINNAG   94 (264)
T ss_dssp             HSCCCEEECCCC
T ss_pred             hCCCCEEEECCc
Confidence            235999999999

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.95  E-value=0.0012  Score=54.19  Aligned_cols=78  Identities=15%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-E--ecCh-hhHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-F--TESQ-LEVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~--~~~~-~~~~~i~~~~~~~g~~d  199 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   .++   ....++.... +  |-.+ ..++.+.+.....|++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~---~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GED---VVADLGDRARFAAADVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS---CHH---HHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc---hHH---HHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence            46899999999999999999888889999988853   222   2333444322 2  2222 22222222211133699


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        82 ~lv~nAg~   89 (257)
T 3tl3_A           82 IVVNCAGT   89 (257)
T ss_dssp             EEEECGGG
T ss_pred             EEEECCCC
Confidence            99999984

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.95  E-value=0.0077  Score=50.67  Aligned_cols=97  Identities=18%  Similarity=0.273  Sum_probs=61.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      ..+|||+|++|.+|..+++.+...|.+++++++..... +++.+.+   ...+.. ++..+-.+.+.+.+...+   +|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~D~~d~~~l~~~~~~---~d~   79 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAK-LIEASLDDHQRLVDALKQ---VDV   79 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCE-EECCCSSCHHHHHHHHTT---CSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeE-EEeCCCCCHHHHHHHHhC---CCE
Confidence            46799999999999999998888899999988753221 3333333   233433 332222233455555543   999


Q ss_pred             EEecCCCc----c---HHHHHHhcccCC---EEEE
Q 021311          201 GFNCVGGN----S---ASKVLKFLSQGG---TMVT  225 (314)
Q Consensus       201 v~d~~g~~----~---~~~~~~~l~~~G---~~v~  225 (314)
                      ||.+++..    .   ...+++.++..|   ++|.
T Consensus        80 vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~  114 (313)
T 1qyd_A           80 VISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLP  114 (313)
T ss_dssp             EEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred             EEECCccccchhhHHHHHHHHHHHHhcCCCceEEe
Confidence            99999864    1   245566655443   7763

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.95  E-value=0.0054  Score=52.48  Aligned_cols=92  Identities=15%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ..+++|||+|++|.+|..+++.+...|.+|+++.+....          .+... +..+-.+.+.+.+...   ++|+||
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----------~~~~~-~~~Dl~d~~~~~~~~~---~~d~vi   82 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG----------TGGEE-VVGSLEDGQALSDAIM---GVSAVL   82 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS----------SCCSE-EESCTTCHHHHHHHHT---TCSEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC----------CCccE-EecCcCCHHHHHHHHh---CCCEEE
Confidence            456899999999999999999999999999999865321          22222 2222222334544444   399999


Q ss_pred             ecCCCcc----------------HHHHHHhcccC--CEEEEEcC
Q 021311          203 NCVGGNS----------------ASKVLKFLSQG--GTMVTYGG  228 (314)
Q Consensus       203 d~~g~~~----------------~~~~~~~l~~~--G~~v~~g~  228 (314)
                      .+++...                ...+++.+...  +++|.+++
T Consensus        83 h~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           83 HLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             ECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            9987521                12344444433  48998885

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.95  E-value=0.0024  Score=52.61  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=67.9

Q ss_pred             cccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh
Q 021311          104 TIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL  183 (314)
Q Consensus       104 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  183 (314)
                      +.|+++..+...+.+..---.|++++|.|+++.+|..+++++...|+++.++-+.   +                    .
T Consensus       139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~---t--------------------~  195 (285)
T 3p2o_A          139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---T--------------------K  195 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---C--------------------S
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---c--------------------h
Confidence            4565666666666664334589999999997779999999999999997765521   1                    0


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                         ++.+.+.   ..|+++.++|.+.+ ---++++++..++.+|...
T Consensus       196 ---~L~~~~~---~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          196 ---DLSLYTR---QADLIIVAAGCVNL-LRSDMVKEGVIVVDVGINR  235 (285)
T ss_dssp             ---CHHHHHT---TCSEEEECSSCTTC-BCGGGSCTTEEEEECCCEE
T ss_pred             ---hHHHHhh---cCCEEEECCCCCCc-CCHHHcCCCeEEEEeccCc
Confidence               1222232   39999999998644 1125679998999998543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.93  E-value=0.0031  Score=52.80  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=31.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe-cC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINII-RD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~-~~  158 (314)
                      .++++||+|+++++|.++++.+...|++++++. +.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~   43 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   43 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCC
Confidence            468999999999999999999989999998887 53

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.93  E-value=0.0039  Score=51.53  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecChh-hHHH-HHHHhcCCCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQL-EVKN-VKGLLANLPE  197 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~~-~~~~-i~~~~~~~g~  197 (314)
                      ...++++||+|+++++|.++++.+...|++++++.+...    ..     .+....+  |-.+. .+++ +.+.....|+
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~----~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEK----SD-----VNVSDHFKIDVTNEEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC------C-----TTSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch----hc-----cCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999998889999998875421    11     1111222  33222 2222 2222222235


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        82 iD~lv~nAg~   91 (269)
T 3vtz_A           82 IDILVNNAGI   91 (269)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.93  E-value=0.0052  Score=51.60  Aligned_cols=96  Identities=19%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc--HHHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS--DEAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~--~~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      .++|+|+|++|.+|...++.+...|.+++++++.....  +++.+.+   ...+.. ++..+-.+.+.+.+...+   +|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~-~v~~D~~d~~~l~~~~~~---~d   79 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN-IVHGSIDDHASLVEAVKN---VD   79 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCE-EECCCTTCHHHHHHHHHT---CS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCE-EEEeccCCHHHHHHHHcC---CC
Confidence            46799999999999999998888899999888753221  3333322   234443 332222233445555443   99


Q ss_pred             EEEecCCCcc---HHHHHHhcccC---CEEE
Q 021311          200 LGFNCVGGNS---ASKVLKFLSQG---GTMV  224 (314)
Q Consensus       200 ~v~d~~g~~~---~~~~~~~l~~~---G~~v  224 (314)
                      +||.+++...   ...+++.++..   .++|
T Consensus        80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           80 VVISTVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             EEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             EEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            9999998642   24555555432   4776

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.92  E-value=0.0045  Score=50.19  Aligned_cols=78  Identities=24%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhC-CCc-EEE--ecChh-hH----HHHHHHhc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGL-GAD-EVF--TESQL-EV----KNVKGLLA  193 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~l-g~~-~~~--~~~~~-~~----~~i~~~~~  193 (314)
                      ++++||+|++|.+|.++++.+...|  ++++++.+.    .++.+.+.++ +.. ..+  |..+. .+    +++.+..+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~----~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD----VEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS----GGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC----HHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcC
Confidence            6789999999999999999998899  888888864    3333344444 222 222  22221 22    22333232


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      .. ++|++|.|+|.
T Consensus        79 ~~-~id~li~~Ag~   91 (250)
T 1yo6_A           79 SD-GLSLLINNAGV   91 (250)
T ss_dssp             GG-CCCEEEECCCC
T ss_pred             CC-CCcEEEECCcc
Confidence            11 39999999974

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.92  E-value=0.0051  Score=51.60  Aligned_cols=80  Identities=16%  Similarity=0.230  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC----CCcE-EE--ecCh-hhHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL----GADE-VF--TESQ-LEVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l----g~~~-~~--~~~~-~~~~~-i~~~~~  193 (314)
                      .++++||+|++|.+|.+++..+...|++++++.+    +.++.+.+ ..+    +... .+  |-.+ ..+++ +.+...
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r----~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR----KMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998889999988875    33333222 221    4332 22  2222 12222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+++|++++++|.
T Consensus       101 ~~g~id~li~~Ag~  114 (302)
T 1w6u_A          101 VAGHPNIVINNAAG  114 (302)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence            23359999999983

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.92  E-value=0.0038  Score=51.49  Aligned_cols=79  Identities=15%  Similarity=0.067  Sum_probs=49.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecCh-hhHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQ-LEVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~-~~~~~-i~~~~~~~g~~d  199 (314)
                      .++++||+|++|++|.++++.+...|++++++.+    +.++.+.+..-. ...+  |-.+ ..+++ +.+.....|++|
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r----~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   89 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLAR----RVERLKALNLPN-TLCAQVDVTDKYTFDTAITRAEKIYGPAD   89 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEES----CHHHHHTTCCTT-EEEEECCTTCHHHHHHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHhhcCC-ceEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence            4689999999999999999999899999998885    444433322111 1222  2222 12222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        90 ~lvnnAg~   97 (266)
T 3p19_A           90 AIVNNAGM   97 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999985

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.91  E-value=0.014  Score=42.79  Aligned_cols=94  Identities=14%  Similarity=0.072  Sum_probs=62.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      .++++|+|+ |.+|..+++.+...|.+++++.+    ++++.+.++..+... +..+..+.+.+.+. +-. ++|+++.+
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~----~~~~~~~~~~~~~~~-~~gd~~~~~~l~~~-~~~-~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDK----SKEKIELLEDEGFDA-VIADPTDESFYRSL-DLE-GVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEES----CHHHHHHHHHTTCEE-EECCTTCHHHHHHS-CCT-TCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEEC----CHHHHHHHHHCCCcE-EECCCCCHHHHHhC-Ccc-cCCEEEEe
Confidence            468999999 99999999999999999988774    677777777777543 33333233334433 222 49999999


Q ss_pred             CCCccH----HHHHHhcccCCEEEEEc
Q 021311          205 VGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      ++....    ....+.+. ..+++...
T Consensus        78 ~~~~~~n~~~~~~a~~~~-~~~iia~~  103 (141)
T 3llv_A           78 GSDDEFNLKILKALRSVS-DVYAIVRV  103 (141)
T ss_dssp             CSCHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhC-CceEEEEE
Confidence            996543    23333444 55555543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.91  E-value=0.0068  Score=52.00  Aligned_cols=81  Identities=5%  Similarity=0.056  Sum_probs=52.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hC-----CCcEEEecChhhHHHHHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GL-----GADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~l-----g~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      .+.+|||+|++|.+|..++..+...|.+|+++.+......++.+.+. .+     .....+..+-.+.+.+.+...   +
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~  102 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA---G  102 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT---T
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc---C
Confidence            35789999999999999999888889999998875432333333322 12     111233233223344555444   3


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+||.+++.
T Consensus       103 ~d~vih~A~~  112 (352)
T 1sb8_A          103 VDYVLHQAAL  112 (352)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECCcc
Confidence            9999999985

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.90  E-value=0.0048  Score=50.18  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +++||+|++|.+|..++..+...|++++++.+.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~   34 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRG   34 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            479999999999999998888889999988864

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.90  E-value=0.0043  Score=50.82  Aligned_cols=96  Identities=8%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      .+.|+++..+...+.+..  -.|++++|.|+++.+|..+++++...|++++++.+.   +                    
T Consensus       130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---t--------------------  184 (276)
T 3ngx_A          130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---T--------------------  184 (276)
T ss_dssp             SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---C--------------------
T ss_pred             CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---c--------------------
Confidence            355666677777777754  689999999997789999999999999998766521   1                    


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .+   +.+.+.   ..|++|.++|.+.+ ---++++++..++.+|...
T Consensus       185 ~~---L~~~~~---~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          185 KD---IGSMTR---SSKIVVVAVGRPGF-LNREMVTPGSVVIDVGINY  225 (276)
T ss_dssp             SC---HHHHHH---HSSEEEECSSCTTC-BCGGGCCTTCEEEECCCEE
T ss_pred             cc---HHHhhc---cCCEEEECCCCCcc-ccHhhccCCcEEEEeccCc
Confidence            11   222222   29999999998643 1125579999999998543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.89  E-value=0.0035  Score=53.95  Aligned_cols=82  Identities=10%  Similarity=0.079  Sum_probs=50.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +.+|||+|++|.+|..+++.+...|.+|+++.+.........+.+..-+....+..+-.+.+.+.+...+. ++|+||.+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~vih~   87 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF-QPEIVFHM   87 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhc-CCCEEEEC
Confidence            57999999999999999998888899999988754322222221111111123322222223343333322 39999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      ++.
T Consensus        88 A~~   90 (357)
T 1rkx_A           88 AAQ   90 (357)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            984

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.89  E-value=0.003  Score=53.83  Aligned_cols=82  Identities=9%  Similarity=0.015  Sum_probs=48.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC------CCc-EEEecC--h-hhHHHHHHHhcC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL------GAD-EVFTES--Q-LEVKNVKGLLAN  194 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l------g~~-~~~~~~--~-~~~~~i~~~~~~  194 (314)
                      ++++||+|++|++|.+++..+...|++++.+.+.....+...+.++..      +.. ..+..+  + ..++.+.+... 
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~-   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT-   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh-
Confidence            578999999999999999999999999877764322122222222221      222 223222  2 12233222221 


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        81 ~g~iD~lVnnAG~   93 (327)
T 1jtv_A           81 EGRVDVLVCNAGL   93 (327)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2459999999984

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.88  E-value=0.0064  Score=49.26  Aligned_cols=75  Identities=19%  Similarity=0.245  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+++|||+|++|.+|..+++.+...  |.+++++.+    ++.+.+.+ ..+.. .+..+-.+.+.+.+...   ++|++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r----~~~~~~~~-~~~~~-~~~~D~~d~~~~~~~~~---~~d~v   73 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR----SAQGKEKI-GGEAD-VFIGDITDADSINPAFQ---GIDAL   73 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEES----CHHHHHHT-TCCTT-EEECCTTSHHHHHHHHT---TCSEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEc----CCCchhhc-CCCee-EEEecCCCHHHHHHHHc---CCCEE
Confidence            4688999999999999999888888  789988885    34433322 11222 22222223345555554   39999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      |.+++.
T Consensus        74 i~~a~~   79 (253)
T 1xq6_A           74 VILTSA   79 (253)
T ss_dssp             EECCCC
T ss_pred             EEeccc
Confidence            999874

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.88  E-value=0.0041  Score=51.35  Aligned_cols=82  Identities=12%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCc-EEE--ecChh-hHHH-HHHHhc
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGAD-EVF--TESQL-EVKN-VKGLLA  193 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~-~~~--~~~~~-~~~~-i~~~~~  193 (314)
                      ..++++||+|+++++|.++++.+...|++++++.+.   ..+..+    .....+.. ..+  |-.+. .+++ +.+...
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSE---RNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA   99 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECS---CHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC---chHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999888743   222222    22333433 222  22221 2222 222222


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..|++|++++++|.
T Consensus       100 ~~g~id~li~nAg~  113 (269)
T 3gk3_A          100 DFGKVDVLINNAGI  113 (269)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            22359999999984

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.88  E-value=0.0046  Score=51.33  Aligned_cols=98  Identities=12%  Similarity=0.163  Sum_probs=67.9

Q ss_pred             cccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh
Q 021311          104 TIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL  183 (314)
Q Consensus       104 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  183 (314)
                      +.|+++..++..+.+..---.|++++|.|+++.+|..+++++...|+++.++-+.   + ...                 
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~---T-~~l-----------------  202 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG---T-STE-----------------  202 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---S-CHH-----------------
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---C-CCc-----------------
Confidence            4566666666666664444589999999997779999999999999997766531   1 111                 


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                        + +.+.+.   ..|+|+.++|.+.+ ---++++++..++.+|..
T Consensus       203 --~-l~~~~~---~ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          203 --D-MIDYLR---TADIVIAAMGQPGY-VKGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             --H-HHHHHH---TCSEEEECSCCTTC-BCGGGSCTTCEEEECCCE
T ss_pred             --h-hhhhhc---cCCEEEECCCCCCC-CcHHhcCCCcEEEEEecc
Confidence              1 012222   39999999998643 112557999999999854

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.87  E-value=0.0027  Score=50.10  Aligned_cols=97  Identities=20%  Similarity=0.300  Sum_probs=64.1

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNVKG  190 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i~~  190 (314)
                      ....+.++++||-.|+ |. |..++.+++. +.+++++-.    +++..+.++    ..|..   .++..+-..      
T Consensus        49 ~~l~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~v~~vD~----s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~------  115 (204)
T 3njr_A           49 AALAPRRGELLWDIGG-GS-GSVSVEWCLA-GGRAITIEP----RADRIENIQKNIDTYGLSPRMRAVQGTAPA------  115 (204)
T ss_dssp             HHHCCCTTCEEEEETC-TT-CHHHHHHHHT-TCEEEEEES----CHHHHHHHHHHHHHTTCTTTEEEEESCTTG------
T ss_pred             HhcCCCCCCEEEEecC-CC-CHHHHHHHHc-CCEEEEEeC----CHHHHHHHHHHHHHcCCCCCEEEEeCchhh------
Confidence            4467899999999998 44 8888888888 778777663    566665553    34543   222222111      


Q ss_pred             HhcCCCCCcEEEecCCCcc--HHHHHHhcccCCEEEEEc
Q 021311          191 LLANLPEPALGFNCVGGNS--ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~--~~~~~~~l~~~G~~v~~g  227 (314)
                      .....+.+|+|+...+...  +..+.+.|+++|+++...
T Consensus       116 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (204)
T 3njr_A          116 ALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANA  154 (204)
T ss_dssp             GGTTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hcccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEe
Confidence            1111124999997765433  478889999999998765

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.86  E-value=0.0059  Score=53.45  Aligned_cols=88  Identities=11%  Similarity=0.134  Sum_probs=55.8

Q ss_pred             hcC-CCCCEEEEcCCCcHHHHHHHHHHHH-cCCcEEEEecCCCCcHH------------HHHHHHhCCCcEE-EecC--h
Q 021311          120 TTL-NSGDSIVQNGATSIVGQCIIQIARH-RGIHSINIIRDRAGSDE------------AKEKLKGLGADEV-FTES--Q  182 (314)
Q Consensus       120 ~~~-~~~~~vlI~g~~g~~G~~a~~la~~-~g~~vi~~~~~~~~~~~------------~~~~~~~lg~~~~-~~~~--~  182 (314)
                      ..+ +.++++||+|+++++|++.+..+.. .|++++++.+.....++            ..+.++..|.... +..+  +
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd  134 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFS  134 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCC
Confidence            445 4688999999999999999887777 99999988765432221            1244556665433 2222  2


Q ss_pred             -hhHHH-HHHHhcCC-CCCcEEEecCCC
Q 021311          183 -LEVKN-VKGLLANL-PEPALGFNCVGG  207 (314)
Q Consensus       183 -~~~~~-i~~~~~~~-g~~d~v~d~~g~  207 (314)
                       ...++ +....... |++|++++++|.
T Consensus       135 ~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          135 DAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence             22222 22222223 469999999875

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.86  E-value=0.0061  Score=51.12  Aligned_cols=96  Identities=14%  Similarity=0.234  Sum_probs=60.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC-CC-cH-HHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR-AG-SD-EAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~-~~-~~-~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      +++|||+|++|.+|...++.+...|.+++++++.. .. .+ ++.+.+   ...+.. ++..+-.+.+.+.+...+   +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~-~v~~D~~d~~~l~~~~~~---~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVI-LLEGDINDHETLVKAIKQ---V   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCE-EEECCTTCHHHHHHHHTT---C
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCE-EEEeCCCCHHHHHHHHhC---C
Confidence            46799999999999999988888899999988753 10 11 333222   334543 332222233455555543   9


Q ss_pred             cEEEecCCCcc---HHHHHHhcccC---CEEE
Q 021311          199 ALGFNCVGGNS---ASKVLKFLSQG---GTMV  224 (314)
Q Consensus       199 d~v~d~~g~~~---~~~~~~~l~~~---G~~v  224 (314)
                      |+||.+++...   ...+++.++..   .++|
T Consensus        78 d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           78 DIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             SEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            99999998643   24555555433   4676

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.84  E-value=0.0039  Score=53.14  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=30.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe-c
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINII-R  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~-~  157 (314)
                      .++++||+|+++++|.++++.+...|++++++. +
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r   79 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   79 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999999999999999999999999998887 5

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.84  E-value=0.0066  Score=51.84  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=50.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC-CCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR-AGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      .+|||+|++|.+|..+++.+...|.+|+++.+.. .........+...+....+..+-.+.+.+.+...+. ++|+||.+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~vih~   80 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY-MPDSCFHL   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH-CCSEEEEC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhcc-CCCEEEEC
Confidence            4799999999999999988888899999887532 112223333433332233333222223343333222 39999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      ++.
T Consensus        81 A~~   83 (347)
T 1orr_A           81 AGQ   83 (347)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            985

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.82  E-value=0.0032  Score=53.63  Aligned_cols=84  Identities=13%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC--CC-cEEEecChhhHHHHHHHhcCCCC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL--GA-DEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~-~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      .-+++.+|||+|++|.+|..+++.+...|.+|+++.+......  ...+..+  +. ...+..+-.+.+.+.+...+. +
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~   86 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIEGDIQYEDGDMADACSVQRAVIKA-Q   86 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH-C
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc--ccchhhccccCceEEEECCCCCHHHHHHHHHHc-C
Confidence            4678999999999999999999888888999999887532211  1112222  11 122222222233444433332 3


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|+||.|++.
T Consensus        87 ~d~Vih~A~~   96 (335)
T 1rpn_A           87 PQEVYNLAAQ   96 (335)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECccc
Confidence            8999999985

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.82  E-value=0.0061  Score=49.51  Aligned_cols=33  Identities=21%  Similarity=0.105  Sum_probs=29.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ++++||+|++|.+|..++..+...|++++++.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r   34 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDL   34 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            578999999999999999988889999888875

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.82  E-value=0.012  Score=52.57  Aligned_cols=83  Identities=17%  Similarity=0.222  Sum_probs=51.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecCh-hhHHHH-HHHhcCCCC-Cc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQ-LEVKNV-KGLLANLPE-PA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~-~~~~~i-~~~~~~~g~-~d  199 (314)
                      +++++||+|++|++|.++++.+...|++++.+.+.. ..++..+...+++...+ .|-.+ ..++++ .+.....++ +|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~-~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG-AAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG-GHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc-cHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            578999999999999999988888899988776431 11222233344554422 23222 223332 222222233 99


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus       291 ~lV~nAGv  298 (454)
T 3u0b_A          291 ILVNNAGI  298 (454)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999985

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.82  E-value=0.0087  Score=49.23  Aligned_cols=81  Identities=11%  Similarity=0.093  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcE-EEec--Chh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADE-VFTE--SQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~-~~~~--~~~-~~~~-i~~~~~~  194 (314)
                      .++++||+|+++++|.++++.+...|++++++.+.   +.++.    +.+.+.+... .+..  .+. ..++ +.+....
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r---~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHR---DAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999776643   22222    2333344332 2322  221 2222 2222222


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus       102 ~g~id~li~nAg~  114 (267)
T 4iiu_A          102 HGAWYGVVSNAGI  114 (267)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             hCCccEEEECCCC
Confidence            2359999999984

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.77  E-value=0.0037  Score=53.48  Aligned_cols=81  Identities=9%  Similarity=0.058  Sum_probs=47.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhC---CCcEEEecChhhHHHHHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGL---GADEVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~l---g~~~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      .+.+|||+||+|.+|..+++.+...|  .++++..+..  .......+..+   .....+..+-.+.+.+.+...+. ++
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~   99 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT--YSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKER-DV   99 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC--TTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-TC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc--cccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhc-CC
Confidence            45789999999999999998888888  5666655432  11111122222   11223323322333444444333 39


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+||.+++.
T Consensus       100 d~Vih~A~~  108 (346)
T 4egb_A          100 QVIVNFAAE  108 (346)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999984

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.77  E-value=0.0061  Score=52.74  Aligned_cols=98  Identities=8%  Similarity=0.018  Sum_probs=59.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~  202 (314)
                      +.+|||+|++|.+|..+++.+... |.+|+++.+...    +...+........+..+-. +.+.+.+...   ++|+||
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~----~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~---~~d~Vi   96 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTD----RLGDLVKHERMHFFEGDITINKEWVEYHVK---KCDVIL   96 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCT----TTGGGGGSTTEEEEECCTTTCHHHHHHHHH---HCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChh----hhhhhccCCCeEEEeCccCCCHHHHHHHhc---cCCEEE
Confidence            478999999999999999888777 899999986532    1112211112222322222 2334444443   399999


Q ss_pred             ecCCCccH------------------HHHHHhc-ccCCEEEEEcCC
Q 021311          203 NCVGGNSA------------------SKVLKFL-SQGGTMVTYGGM  229 (314)
Q Consensus       203 d~~g~~~~------------------~~~~~~l-~~~G~~v~~g~~  229 (314)
                      .|++....                  ..+++.+ +.+.++|.+++.
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~  142 (372)
T 3slg_A           97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS  142 (372)
T ss_dssp             ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCG
T ss_pred             EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcH
Confidence            99885321                  2234433 234799988853

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.76  E-value=0.0045  Score=51.36  Aligned_cols=96  Identities=16%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|||+|++|.+|...++.+...  |.+++++.+....    .+.+...+.. ++..+-.+.+.+.+...   ++|+||.+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~----~~~~~~~~~~-~~~~D~~d~~~~~~~~~---~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK----AQALAAQGIT-VRQADYGDEAALTSALQ---GVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT----CHHHHHTTCE-EEECCTTCHHHHHHHTT---TCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh----hhhhhcCCCe-EEEcCCCCHHHHHHHHh---CCCEEEEe
Confidence            4899999999999999888877  8999998865322    2222233433 33222223345555544   39999999


Q ss_pred             CCCc------cHHHHHHhccc-C-CEEEEEcCCC
Q 021311          205 VGGN------SASKVLKFLSQ-G-GTMVTYGGMS  230 (314)
Q Consensus       205 ~g~~------~~~~~~~~l~~-~-G~~v~~g~~~  230 (314)
                      ++..      ....+++.++. + +++|.+++..
T Consensus        73 a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           73 SSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             C--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            9852      22455555543 2 5899887544

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.75  E-value=0.0082  Score=50.68  Aligned_cols=76  Identities=12%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      -.+..+|||+|++|.+|..+++.+...|.+|+++.+.... .    .   ++. ..+..+-.+.+.+.+...+. ++|+|
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~----~---l~~-~~~~~Dl~d~~~~~~~~~~~-~~d~v   78 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-K----L---PNV-EMISLDIMDSQRVKKVISDI-KPDYI   78 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-C----C---TTE-EEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-c----c---cee-eEEECCCCCHHHHHHHHHhc-CCCEE
Confidence            4567899999999999999999888889999998865321 1    1   222 22222222233344433322 49999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      |.|++.
T Consensus        79 ih~A~~   84 (321)
T 2pk3_A           79 FHLAAK   84 (321)
T ss_dssp             EECCSC
T ss_pred             EEcCcc
Confidence            999985

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.74  E-value=0.0049  Score=51.12  Aligned_cols=97  Identities=12%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             cccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh
Q 021311          104 TIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL  183 (314)
Q Consensus       104 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  183 (314)
                      ++||++......+.+..---.|++++|.|++..+|.-+++++...|+++.++-+.   +                    .
T Consensus       144 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---t--------------------~  200 (301)
T 1a4i_A          144 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---T--------------------A  200 (301)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---C--------------------S
T ss_pred             ccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---c--------------------c
Confidence            4555555555556553323478999999996679999999999999997765421   1                    1


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                         ++.+.+.   .+|+||.++|.+.+ ---++++++..++.+|...
T Consensus       201 ---~L~~~~~---~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~~  240 (301)
T 1a4i_A          201 ---HLDEEVN---KGDILVVATGQPEM-VKGEWIKPGAIVIDCGINY  240 (301)
T ss_dssp             ---SHHHHHT---TCSEEEECCCCTTC-BCGGGSCTTCEEEECCCBC
T ss_pred             ---cHHHHhc---cCCEEEECCCCccc-CCHHHcCCCcEEEEccCCC
Confidence               1223333   39999999998754 1224578999999999653

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.74  E-value=0.011  Score=47.39  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcE-EEecChhhHHHHHHHhcCC-CCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADE-VFTESQLEVKNVKGLLANL-PEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~-~~~~~~~~~~~i~~~~~~~-g~~d~v~  202 (314)
                      +++||+|+++++|.+++..+...|++++.+.+    ++++.+.+ .+++... .+..+-.+.+.+.+..... ..+|+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGR----SESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEES----CHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            46899999999999999999999999998885    44444443 4454322 2222222233344433321 1369999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        78 ~~Ag~   82 (230)
T 3guy_A           78 HSAGS   82 (230)
T ss_dssp             ECCCC
T ss_pred             EeCCc
Confidence            99984

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.74  E-value=0.0059  Score=50.65  Aligned_cols=97  Identities=20%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      ++|||+|++|.+|..+++.+...  |.+++++.+...    +...+...+.. ++..+-.+.+.+.+...   ++|+||.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~----~~~~l~~~~~~-~~~~D~~d~~~l~~~~~---~~d~vi~   72 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE----KASTLADQGVE-VRHGDYNQPESLQKAFA---GVSKLLF   72 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTT----TTHHHHHTTCE-EEECCTTCHHHHHHHTT---TCSEEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHH----HHhHHhhcCCe-EEEeccCCHHHHHHHHh---cCCEEEE
Confidence            36999999999999999888877  899999886432    22223333433 23222223345555544   3999999


Q ss_pred             cCCCc-----c---HHHHHHhcccC--CEEEEEcCCC
Q 021311          204 CVGGN-----S---ASKVLKFLSQG--GTMVTYGGMS  230 (314)
Q Consensus       204 ~~g~~-----~---~~~~~~~l~~~--G~~v~~g~~~  230 (314)
                      +++..     .   ...+++.++..  +++|.+++..
T Consensus        73 ~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           73 ISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             cCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            99852     1   13445555433  4899888543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.74  E-value=0.0049  Score=50.52  Aligned_cols=34  Identities=18%  Similarity=0.146  Sum_probs=29.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHH---cCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARH---RGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~---~g~~vi~~~~  157 (314)
                      .++++||+|+++++|.++++.+..   .|++++++.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r   41 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSAR   41 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEES
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            367899999999999999987777   8999998875

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.73  E-value=0.0046  Score=50.09  Aligned_cols=79  Identities=16%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCC-------cEEEEecCCCCcHHHHHHH----HhCCCcE-EE--ecChh-hHHH-H
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGI-------HSINIIRDRAGSDEAKEKL----KGLGADE-VF--TESQL-EVKN-V  188 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~-------~vi~~~~~~~~~~~~~~~~----~~lg~~~-~~--~~~~~-~~~~-i  188 (314)
                      ++++||+|++|.+|..+++.+...|+       +++.+.+    +.++.+.+    +..+... .+  |-.+. .+++ +
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~   77 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR----TAADLEKISLECRAEGALTDTITADISDMADVRRLT   77 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES----CHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeC----CHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHH
Confidence            57899999999999999988888898       7777775    33333322    2224332 22  22221 2222 2


Q ss_pred             HHHhcCCCCCcEEEecCCC
Q 021311          189 KGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~  207 (314)
                      .+.....+++|++++++|.
T Consensus        78 ~~~~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           78 THIVERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHHHHTSCCSEEEECCCC
T ss_pred             HHHHHhCCCCCEEEEcCCc
Confidence            2222223359999999984

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.73  E-value=0.012  Score=51.68  Aligned_cols=88  Identities=16%  Similarity=0.080  Sum_probs=54.5

Q ss_pred             hcCCCCCEEEEcCCCcHHHHH--HHHHHHHcCCcEEEEecCCCCc------------HHHHHHHHhCCCcEE-E--ecCh
Q 021311          120 TTLNSGDSIVQNGATSIVGQC--IIQIARHRGIHSINIIRDRAGS------------DEAKEKLKGLGADEV-F--TESQ  182 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~--a~~la~~~g~~vi~~~~~~~~~------------~~~~~~~~~lg~~~~-~--~~~~  182 (314)
                      .....++++||+|+++++|++  .+..+...|++++++.+.....            +...+.++..|.... +  |-.+
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd  134 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFS  134 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCC
Confidence            445778999999999999998  5544445699998887654322            222234455665432 2  2222


Q ss_pred             -hhHHH-HHHHhcCCCCCcEEEecCCC
Q 021311          183 -LEVKN-VKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       183 -~~~~~-i~~~~~~~g~~d~v~d~~g~  207 (314)
                       ...++ +.+.....|++|++++++|.
T Consensus       135 ~~~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          135 NETKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence             22233 33333344569999999886

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.72  E-value=0.005  Score=52.52  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC---cEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA---DEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      +++|||+|++|.+|..+++.+...|.+++++.+.......  +.+..++.   ...+..+-.+.+.+.+...+. ++|+|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~v   79 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIRTIEKV-QPDEV   79 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH-CCSEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHHHHHhc-CCCEE
Confidence            5789999999999999998888889999988865322111  22333321   122222212223343333322 38999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      |.+++.
T Consensus        80 ih~A~~   85 (345)
T 2z1m_A           80 YNLAAQ   85 (345)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.72  E-value=0.01  Score=51.56  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=53.7

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHH-cCCcEEEEecCCCCcHH------------HHHHHHhCCCcEE-EecC--h-hhH
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARH-RGIHSINIIRDRAGSDE------------AKEKLKGLGADEV-FTES--Q-LEV  185 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~-~g~~vi~~~~~~~~~~~------------~~~~~~~lg~~~~-~~~~--~-~~~  185 (314)
                      ..++++||+|+++++|++.+..+.. .|++++++.+.....++            ..+.++..|.... +..+  + ...
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v  124 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK  124 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            5678899999999999999887777 89999887654332221            1224455665432 2222  2 222


Q ss_pred             HH-HHHHhcCCCCCcEEEecCCC
Q 021311          186 KN-VKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       186 ~~-i~~~~~~~g~~d~v~d~~g~  207 (314)
                      ++ +.+.....|++|++++++|.
T Consensus       125 ~~~v~~i~~~~G~IDiLVNNAG~  147 (405)
T 3zu3_A          125 QLTIDAIKQDLGQVDQVIYSLAS  147 (405)
T ss_dssp             HHHHHHHHHHTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEEcCcc
Confidence            22 22233333469999999886

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.72  E-value=0.0097  Score=45.37  Aligned_cols=100  Identities=17%  Similarity=0.173  Sum_probs=63.2

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc--EEEecChhhHHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD--EVFTESQLEVKNVKGL  191 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~--~~~~~~~~~~~~i~~~  191 (314)
                      ....+.++++||-.|+ |. |..+..+++..+...+..++.   ++...+.++    ..+..  ..+..+..  +.+   
T Consensus        19 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~--~~~---   88 (178)
T 3hm2_A           19 SALAPKPHETLWDIGG-GS-GSIAIEWLRSTPQTTAVCFEI---SEERRERILSNAINLGVSDRIAVQQGAP--RAF---   88 (178)
T ss_dssp             HHHCCCTTEEEEEEST-TT-THHHHHHHTTSSSEEEEEECS---CHHHHHHHHHHHHTTTCTTSEEEECCTT--GGG---
T ss_pred             HHhcccCCCeEEEeCC-CC-CHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHHHHhCCCCCEEEecchH--hhh---
Confidence            4467889999999998 43 888888888874444445543   566666554    34443  22222211  111   


Q ss_pred             hcCCCCCcEEEecCCCc---cHHHHHHhcccCCEEEEEc
Q 021311          192 LANLPEPALGFNCVGGN---SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~---~~~~~~~~l~~~G~~v~~g  227 (314)
                      ....+.+|+|+.+....   .+..+.+.|+++|+++...
T Consensus        89 ~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  127 (178)
T 3hm2_A           89 DDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANA  127 (178)
T ss_dssp             GGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEE
T ss_pred             hccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEe
Confidence            11112599999766554   3588889999999998765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.71  E-value=0.0026  Score=51.36  Aligned_cols=98  Identities=19%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcE--EEecChhhHHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADE--VFTESQLEVKNVKGL  191 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~--~~~~~~~~~~~i~~~  191 (314)
                      +...++++++||..|+ | .|..+..+++..+.+++++-.    ++...+.++    ..|...  +...+..     ..+
T Consensus        85 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~v~~~~~d~~-----~~~  153 (235)
T 1jg1_A           85 EIANLKPGMNILEVGT-G-SGWNAALISEIVKTDVYTIER----IPELVEFAKRNLERAGVKNVHVILGDGS-----KGF  153 (235)
T ss_dssp             HHHTCCTTCCEEEECC-T-TSHHHHHHHHHHCSCEEEEES----CHHHHHHHHHHHHHTTCCSEEEEESCGG-----GCC
T ss_pred             HhcCCCCCCEEEEEeC-C-cCHHHHHHHHHhCCEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEECCcc-----cCC
Confidence            3467899999999998 4 688888899887756665552    555555553    344322  2222210     011


Q ss_pred             hcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          192 LANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ..+. ++|+|+.+.....+ ..+.+.|+++|+++..-
T Consensus       154 ~~~~-~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          154 PPKA-PYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             GGGC-CEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCCC-CccEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            1121 39999988776544 78889999999998765

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.71  E-value=0.0095  Score=50.35  Aligned_cols=96  Identities=8%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC-CC-cHHHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR-AG-SDEAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~-~~-~~~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      ..+|||+|++|.+|..+++.+...|.+++++++.. .. ..++.+.+   ...+.. ++..+-.+.+.+.+...+   +|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~-~v~~D~~d~~~l~~a~~~---~d   79 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVT-IIEGEMEEHEKMVSVLKQ---VD   79 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCE-EEECCTTCHHHHHHHHTT---CS
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcE-EEEecCCCHHHHHHHHcC---CC
Confidence            46799999999999999988888899999988753 11 12232222   334443 332222233455555543   99


Q ss_pred             EEEecCCCcc---HHHHHHhcccC---CEEE
Q 021311          200 LGFNCVGGNS---ASKVLKFLSQG---GTMV  224 (314)
Q Consensus       200 ~v~d~~g~~~---~~~~~~~l~~~---G~~v  224 (314)
                      +||.+++...   ...+++.++..   +++|
T Consensus        80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           80 IVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             EEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             EEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            9999998632   35566655443   4776

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.71  E-value=0.015  Score=48.84  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=58.8

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      .+|||+|++|.+|..+++.+...|.+|+++.+..    ...+ ++  +.. .+..+-. .+.+.+...   ++|+||.++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~----~~~~-~~--~~~-~~~~Dl~-~~~~~~~~~---~~d~Vih~a   70 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI----GNKA-IN--DYE-YRVSDYT-LEDLINQLN---DVDAVVHLA   70 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC----C--------CCE-EEECCCC-HHHHHHHTT---TCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCC----Cccc-CC--ceE-EEEcccc-HHHHHHhhc---CCCEEEEcc
Confidence            6899999999999999999999999999998752    1112 22  332 2322322 445555554   399999999


Q ss_pred             CCcc--------------HHHHHHhcccC--CEEEEEcC
Q 021311          206 GGNS--------------ASKVLKFLSQG--GTMVTYGG  228 (314)
Q Consensus       206 g~~~--------------~~~~~~~l~~~--G~~v~~g~  228 (314)
                      +...              ...+++.++..  .++|.+++
T Consensus        71 ~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           71 ATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             CCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            8521              13445555443  47888874

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.69  E-value=0.01  Score=53.99  Aligned_cols=87  Identities=10%  Similarity=0.052  Sum_probs=54.4

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe-cCC--------------CCcHHHHHHHHhCCCcEEE-ecChh-
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII-RDR--------------AGSDEAKEKLKGLGADEVF-TESQL-  183 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~-~~~--------------~~~~~~~~~~~~lg~~~~~-~~~~~-  183 (314)
                      .+++++++||+|++|++|..+++.+...|+++++++ ..+              ...++..+.++..|....+ ..+-. 
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD  326 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence            357889999999999999999988888899866655 322              1123334445556654332 22222 


Q ss_pred             --hHHHHHHHhcCCCCCcEEEecCCC
Q 021311          184 --EVKNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       184 --~~~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                        .++.+.+.....+++|.+|.|+|.
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence              223322222233569999999984

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.67  E-value=0.0081  Score=49.31  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++||+|++|++|.++++.+...|++++++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   61 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS   61 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999999988899999988864

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.67  E-value=0.016  Score=47.95  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhC-----C--C-c-EEEecChhh
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGL-----G--A-D-EVFTESQLE  184 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~l-----g--~-~-~~~~~~~~~  184 (314)
                      +.....++++++||-.|+ | .|..+..+++..+  .+++++- .   +++..+.+++.     |  . . .++..+-. 
T Consensus        91 i~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~-  163 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGA-G-SGALTLSLLRAVGPAGQVISYE-Q---RADHAEHARRNVSGCYGQPPDNWRLVVSDLA-  163 (280)
T ss_dssp             HHHHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEC-S---CHHHHHHHHHHHHHHHTSCCTTEEEECSCGG-
T ss_pred             HHHHcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCCEEEEEe-C---CHHHHHHHHHHHHHhcCCCCCcEEEEECchH-
Confidence            334477899999999998 4 6888888888754  4555444 3   56666555432     3  2 1 22222211 


Q ss_pred             HHHHHHHhcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          185 VKNVKGLLANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       185 ~~~i~~~~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                           +.....+.+|+|+......  .+..+.+.|+++|+++...
T Consensus       164 -----~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          164 -----DSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             -----GCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             -----hcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence                 1111112499999866553  3488899999999998875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.67  E-value=0.0027  Score=54.06  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+.+|||+|++|.+|..+++.+...|.+|+++.+......   +.+..+.....+..+-.+.+.+.+.....+ +|+||.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~-~D~vih   94 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKR---EVLPPVAGLSVIEGSVTDAGLLERAFDSFK-PTHVVH   94 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCG---GGSCSCTTEEEEECCTTCHHHHHHHHHHHC-CSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccch---hhhhccCCceEEEeeCCCHHHHHHHHhhcC-CCEEEE
Confidence            4679999999999999999888888999999886432211   111222222223222222233444333112 999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      |++.
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9985

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.67  E-value=0.011  Score=53.59  Aligned_cols=85  Identities=18%  Similarity=0.264  Sum_probs=54.1

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCC---cHHHHHHHHhCCCcEE-EecChhhHHHHHHHhcCCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAG---SDEAKEKLKGLGADEV-FTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~---~~~~~~~~~~lg~~~~-~~~~~~~~~~i~~~~~~~g  196 (314)
                      +++++++||+|++|.+|..++..+...|++ ++.+.+....   ..+..+.++..|.... +..+-.+.+.+.+.... +
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~-~  334 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA-Y  334 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH-S
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc-C
Confidence            578899999999999999999888888995 5555543211   1223344555665432 22222233344443332 3


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      .+|.||.++|.
T Consensus       335 ~ld~VVh~AGv  345 (511)
T 2z5l_A          335 PPNAVFHTAGI  345 (511)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEECCcc
Confidence            59999999984

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.67  E-value=0.0083  Score=51.26  Aligned_cols=100  Identities=12%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhC----C------------Cc-EEE
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGL----G------------AD-EVF  178 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~l----g------------~~-~~~  178 (314)
                      ....+.++++||-.|+ |. |..+..+++..|.  +++++- .   ++...+.+++.    +            .. .+.
T Consensus        99 ~~l~~~~g~~VLDiG~-G~-G~~~~~la~~~g~~~~v~~vD-~---~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           99 SMMDINPGDTVLEAGS-GS-GGMSLFLSKAVGSQGRVISFE-V---RKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEE-S---SHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HhcCCCCCCEEEEeCC-Cc-CHHHHHHHHHhCCCceEEEEe-C---CHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            3467899999999998 44 8888888888764  555544 3   56666555431    1            11 222


Q ss_pred             ecChhhHHHHHHHhcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          179 TESQLEVKNVKGLLANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       179 ~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                      ..+-...  ...+..+  .+|+|+-....+  .+..+.+.|+++|+++...
T Consensus       173 ~~d~~~~--~~~~~~~--~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          173 HKDISGA--TEDIKSL--TFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             ESCTTCC--C---------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             ECChHHc--ccccCCC--CeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            2221110  0011111  499998765543  3478899999999999775

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.64  E-value=0.0037  Score=49.01  Aligned_cols=63  Identities=14%  Similarity=0.190  Sum_probs=42.7

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      ++||+|++|.+|..+++.+. .|++++++.+..    +          ....|-.+. ..+++.+..   +++|+++.++
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~----~----------~~~~D~~~~~~~~~~~~~~---~~~d~vi~~a   66 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHS----G----------DVTVDITNIDSIKKMYEQV---GKVDAIVSAT   66 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSS----S----------SEECCTTCHHHHHHHHHHH---CCEEEEEECC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCc----c----------ceeeecCCHHHHHHHHHHh---CCCCEEEECC
Confidence            79999999999999998888 899998888542    1          122233322 222322222   3599999999


Q ss_pred             CC
Q 021311          206 GG  207 (314)
Q Consensus       206 g~  207 (314)
                      |.
T Consensus        67 g~   68 (202)
T 3d7l_A           67 GS   68 (202)
T ss_dssp             CC
T ss_pred             CC
Confidence            83

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.63  E-value=0.0023  Score=54.63  Aligned_cols=102  Identities=19%  Similarity=0.231  Sum_probs=60.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+.+|||+|++|.+|..+++.+...|.+|+++.+......+   .+..+.....+..+-.+.+.+.+...+. ++|+||.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~l~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~D~vih   95 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLKDHPNLTFVEGSIADHALVNQLIGDL-QPDAVVH   95 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GSCCCTTEEEEECCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh---hHhhcCCceEEEEeCCCHHHHHHHHhcc-CCcEEEE
Confidence            45789999999999999998888889999998864321111   1111221222322222223344433222 4999999


Q ss_pred             cCCCcc---------------HHHHHHhccc-C-CEEEEEcCC
Q 021311          204 CVGGNS---------------ASKVLKFLSQ-G-GTMVTYGGM  229 (314)
Q Consensus       204 ~~g~~~---------------~~~~~~~l~~-~-G~~v~~g~~  229 (314)
                      +++...               ...+++.+.+ + +++|.+++.
T Consensus        96 ~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~  138 (333)
T 2q1w_A           96 TAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTA  138 (333)
T ss_dssp             CCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred             CceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcH
Confidence            998521               1234444433 3 689988753

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.63  E-value=0.0045  Score=48.86  Aligned_cols=98  Identities=13%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc--EEEecChhhHHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD--EVFTESQLEVKNVKGL  191 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~--~~~~~~~~~~~~i~~~  191 (314)
                      ....++++++||-.|+ | .|..+..+++. +.+++++-.    ++...+.++    ..+..  .++..+...  .   .
T Consensus        71 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~-~~~v~~vD~----~~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~---~  138 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGT-G-SGYQTAILAHL-VQHVCSVER----IKGLQWQARRRLKNLDLHNVSTRHGDGWQ--G---W  138 (210)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEEES----CHHHHHHHHHHHHHTTCCSEEEEESCGGG--C---C
T ss_pred             HhcCCCCCCEEEEEcC-C-CCHHHHHHHHh-CCEEEEEec----CHHHHHHHHHHHHHcCCCceEEEECCccc--C---C
Confidence            4467899999999998 4 48888888887 667766663    566655554    33432  222222111  0   1


Q ss_pred             hcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          192 LANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      ... +.||+|+.+...... ..+.+.|+++|+++..-.
T Consensus       139 ~~~-~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          139 QAR-APFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             GGG-CCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred             ccC-CCccEEEEccchhhhhHHHHHhcccCcEEEEEEc
Confidence            111 259999987766544 678899999999988653

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.62  E-value=0.0087  Score=49.18  Aligned_cols=84  Identities=18%  Similarity=0.183  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHHHHHH-hCCCcEEE---ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGS-DEAKEKLK-GLGADEVF---TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~~~~~-~lg~~~~~---~~~~-~~~~~-i~~~~~~  194 (314)
                      .++++||+|++  +++|.++++.+...|++++++.+..... ++..+.+. ..+....+   |-.+ ..+++ +.+....
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVAD   98 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            57899999998  8999999988888999999887653322 23333332 23433222   2222 12222 2222223


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .+++|++++++|.
T Consensus        99 ~g~id~li~nAg~  111 (267)
T 3gdg_A           99 FGQIDAFIANAGA  111 (267)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            3459999999984

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.61  E-value=0.013  Score=50.91  Aligned_cols=100  Identities=12%  Similarity=0.024  Sum_probs=61.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .+.+|||+|++|.+|..+++.+...| .+|+++.+......+.   +........+..+-.+.+.+.+...   ++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---l~~~~~v~~~~~Dl~d~~~l~~~~~---~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKIN---VPDHPAVRFSETSITDDALLASLQD---EYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGG---SCCCTTEEEECSCTTCHHHHHHCCS---CCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhh---ccCCCceEEEECCCCCHHHHHHHhh---CCCEEE
Confidence            35789999999999999999888889 8998887643221111   1101111223222223344555443   399999


Q ss_pred             ecCCCcc------------------HHHHHHhcccC---CEEEEEcCC
Q 021311          203 NCVGGNS------------------ASKVLKFLSQG---GTMVTYGGM  229 (314)
Q Consensus       203 d~~g~~~------------------~~~~~~~l~~~---G~~v~~g~~  229 (314)
                      .+++...                  ...+++.++..   +++|.+++.
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~  152 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAG  152 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCH
Confidence            9998532                  12344555443   588888753

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.58  E-value=0.0086  Score=51.61  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=60.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHH--cCCcEEEEecCCCCcHH---------HHHHHHhCCCcEEEecChhhHHHHHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARH--RGIHSINIIRDRAGSDE---------AKEKLKGLGADEVFTESQLEVKNVKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~--~g~~vi~~~~~~~~~~~---------~~~~~~~lg~~~~~~~~~~~~~~i~~~~  192 (314)
                      .+.+|||+||+|.+|..++..+..  .|.+|+++.+.......         ........+. ..+..+-.+.+.+.+..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG-EVIAADINNPLDLRRLE   87 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCS-EEEECCTTCHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCc-eEEECCCCCHHHHHHhh
Confidence            468999999999999999988887  89999999864321000         0001111121 23323322334455541


Q ss_pred             cCCCCCcEEEecCCCcc----------------HHHHHHhc-ccCCEEEEEcC
Q 021311          193 ANLPEPALGFNCVGGNS----------------ASKVLKFL-SQGGTMVTYGG  228 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~~----------------~~~~~~~l-~~~G~~v~~g~  228 (314)
                      ..  ++|+||.|++...                ...+++.+ +.++++|.+++
T Consensus        88 ~~--~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS  138 (362)
T 3sxp_A           88 KL--HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASS  138 (362)
T ss_dssp             TS--CCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cc--CCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCc
Confidence            12  4999999998421                12333333 34678888875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.56  E-value=0.0033  Score=49.48  Aligned_cols=99  Identities=16%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCc--EEEecChhhHHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGAD--EVFTESQLEVKNVKGL  191 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~--~~~~~~~~~~~~i~~~  191 (314)
                      ....++++++||-.|+ | .|..+..+++......+..++.   +++..+.+++    .+.+  .++..+-.      +.
T Consensus        34 ~~l~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~------~~  102 (204)
T 3e05_A           34 SKLRLQDDLVMWDIGA-G-SASVSIEASNLMPNGRIFALER---NPQYLGFIRDNLKKFVARNVTLVEAFAP------EG  102 (204)
T ss_dssp             HHTTCCTTCEEEEETC-T-TCHHHHHHHHHCTTSEEEEEEC---CHHHHHHHHHHHHHHTCTTEEEEECCTT------TT
T ss_pred             HHcCCCCCCEEEEECC-C-CCHHHHHHHHHCCCCEEEEEeC---CHHHHHHHHHHHHHhCCCcEEEEeCChh------hh
Confidence            4467899999999998 4 3888888888864334444443   6666666543    3322  22222211      01


Q ss_pred             hcCCCCCcEEEecCCCc----cHHHHHHhcccCCEEEEEc
Q 021311          192 LANLPEPALGFNCVGGN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      ....+.+|+|+......    .+..+.+.|+++|+++...
T Consensus       103 ~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  142 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA  142 (204)
T ss_dssp             CTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             hhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            11112599999877642    2378888999999999865

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.55  E-value=0.0046  Score=50.94  Aligned_cols=94  Identities=10%  Similarity=-0.025  Sum_probs=59.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +++|||+|++|.+|..+++.+...|++++++.+......       ..+ ...+..+-.+.+.+.+...   ++|+++++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-------~~~-~~~~~~Dl~d~~~~~~~~~---~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-------GPN-EECVQCDLADANAVNAMVA---GCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-------CTT-EEEEECCTTCHHHHHHHHT---TCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-------CCC-CEEEEcCCCCHHHHHHHHc---CCCEEEEC
Confidence            468999999999999999888888999988886532111       111 1223233233445555554   39999999


Q ss_pred             CCCcc---H-----------HHHHHhccc--CCEEEEEcCC
Q 021311          205 VGGNS---A-----------SKVLKFLSQ--GGTMVTYGGM  229 (314)
Q Consensus       205 ~g~~~---~-----------~~~~~~l~~--~G~~v~~g~~  229 (314)
                      +|...   +           ..+++.++.  .+++|.+++.
T Consensus        72 Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~  112 (267)
T 3rft_A           72 GGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSN  112 (267)
T ss_dssp             CSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             CCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcch
Confidence            98521   1           123333332  3699998753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.54  E-value=0.0091  Score=49.23  Aligned_cols=98  Identities=18%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      .++|+++......+.+..---.|++++|.|++..+|.-+++++...|+++.++.+.   +                    
T Consensus       137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---t--------------------  193 (288)
T 1b0a_A          137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF---T--------------------  193 (288)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS---C--------------------
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC---c--------------------
Confidence            34565555666666553334578999999996678999999999999998776521   1                    


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .   ++.+.+.   ..|+||.++|.+.+ ---++++++..++.+|...
T Consensus       194 ~---~L~~~~~---~ADIVI~Avg~p~l-I~~~~vk~GavVIDVgi~r  234 (288)
T 1b0a_A          194 K---NLRHHVE---NADLLIVAVGKPGF-IPGDWIKEGAIVIDVGINR  234 (288)
T ss_dssp             S---CHHHHHH---HCSEEEECSCCTTC-BCTTTSCTTCEEEECCCEE
T ss_pred             h---hHHHHhc---cCCEEEECCCCcCc-CCHHHcCCCcEEEEccCCc
Confidence            1   1222222   29999999998754 1123478999999998543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.52  E-value=0.015  Score=51.97  Aligned_cols=89  Identities=13%  Similarity=0.051  Sum_probs=65.2

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      -.|++|.|+|. |.+|..+++.++.+|++|+++.+    +..+...+...|... .     .   +.+...   ..|+|+
T Consensus       275 L~GktVgIIG~-G~IG~~vA~~l~~~G~~V~v~d~----~~~~~~~a~~~G~~~-~-----~---l~ell~---~aDiVi  337 (494)
T 3d64_A          275 IAGKIAVVAGY-GDVGKGCAQSLRGLGATVWVTEI----DPICALQAAMEGYRV-V-----T---MEYAAD---KADIFV  337 (494)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECS----CHHHHHHHHTTTCEE-C-----C---HHHHTT---TCSEEE
T ss_pred             cCCCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeC----ChHhHHHHHHcCCEe-C-----C---HHHHHh---cCCEEE
Confidence            47899999998 99999999999999999887763    444332334455432 1     1   222232   399999


Q ss_pred             ecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          203 NCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       203 d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      .+++....  ...++.|+++..++.++.
T Consensus       338 ~~~~t~~lI~~~~l~~MK~gAilINvgr  365 (494)
T 3d64_A          338 TATGNYHVINHDHMKAMRHNAIVCNIGH  365 (494)
T ss_dssp             ECSSSSCSBCHHHHHHCCTTEEEEECSS
T ss_pred             ECCCcccccCHHHHhhCCCCcEEEEcCC
Confidence            99876443  678899999999999884

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=96.50  E-value=0.013  Score=49.83  Aligned_cols=80  Identities=10%  Similarity=0.065  Sum_probs=48.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC-CC-cEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL-GA-DEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~-~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|||+|++|.+|..+++.+...|.+++++.+......+..+.+..+ +. ...+..+-.+.+.+.+...+.+ +|+||.+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~-~D~vih~   80 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHA-IDTVIHF   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTT-CSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccC-CCEEEEC
Confidence            6899999999999999888888999988764322222233333221 21 1223222222233444333233 9999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      ++.
T Consensus        81 A~~   83 (338)
T 1udb_A           81 AGL   83 (338)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            985

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.50  E-value=0.012  Score=48.44  Aligned_cols=94  Identities=13%  Similarity=0.055  Sum_probs=64.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCCcE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .++.+||..|+ |. |..+..+++.. +.+++++- .   ++...+.+++.+.. .....+...      +....+.+|+
T Consensus        84 ~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~v~~vD-~---s~~~~~~a~~~~~~~~~~~~d~~~------~~~~~~~fD~  151 (269)
T 1p91_A           84 DKATAVLDIGC-GE-GYYTHAFADALPEITTFGLD-V---SKVAIKAAAKRYPQVTFCVASSHR------LPFSDTSMDA  151 (269)
T ss_dssp             TTCCEEEEETC-TT-STTHHHHHHTCTTSEEEEEE-S---CHHHHHHHHHHCTTSEEEECCTTS------CSBCTTCEEE
T ss_pred             CCCCEEEEECC-CC-CHHHHHHHHhCCCCeEEEEe-C---CHHHHHHHHHhCCCcEEEEcchhh------CCCCCCceeE
Confidence            68899999998 65 88898999886 66666555 3   77777777665433 222222111      1111125999


Q ss_pred             EEecCCCccHHHHHHhcccCCEEEEEcC
Q 021311          201 GFNCVGGNSASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       201 v~d~~g~~~~~~~~~~l~~~G~~v~~g~  228 (314)
                      |+.......+..+.+.|+|+|+++....
T Consensus       152 v~~~~~~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          152 IIRIYAPCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EEEESCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEeCChhhHHHHHHhcCCCcEEEEEEc
Confidence            9976665667899999999999988763

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.47  E-value=0.015  Score=51.73  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=65.9

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      --.|++|.|+|. |.+|..+++.++.+|++++++..    +..+...+...|... .     .   +.+...   ..|+|
T Consensus       254 ~l~GktVgIIG~-G~IG~~vA~~l~~~G~~Viv~d~----~~~~~~~a~~~g~~~-~-----~---l~ell~---~aDiV  316 (479)
T 1v8b_A          254 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEI----DPICAIQAVMEGFNV-V-----T---LDEIVD---KGDFF  316 (479)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECS----CHHHHHHHHTTTCEE-C-----C---HHHHTT---TCSEE
T ss_pred             ccCCCEEEEEee-CHHHHHHHHHHHhCcCEEEEEeC----ChhhHHHHHHcCCEe-c-----C---HHHHHh---cCCEE
Confidence            357899999998 99999999999999999887763    444433444556531 1     1   222222   39999


Q ss_pred             EecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          202 FNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       202 ~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      +.+.+....  ...++.|+++..++.+|.
T Consensus       317 i~~~~t~~lI~~~~l~~MK~gailiNvgr  345 (479)
T 1v8b_A          317 ITCTGNVDVIKLEHLLKMKNNAVVGNIGH  345 (479)
T ss_dssp             EECCSSSSSBCHHHHTTCCTTCEEEECSS
T ss_pred             EECCChhhhcCHHHHhhcCCCcEEEEeCC
Confidence            999866543  578899999999999984

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.46  E-value=0.007  Score=49.71  Aligned_cols=97  Identities=14%  Similarity=0.196  Sum_probs=66.2

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEec
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTE  180 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~  180 (314)
                      .+.|++...+...+.+..---.|++++|.|++..+|..+++++...  |++++++-+.   +                  
T Consensus       136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~---t------------------  194 (281)
T 2c2x_A          136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG---T------------------  194 (281)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT---C------------------
T ss_pred             CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc---h------------------
Confidence            3456555556666655432347899999999667899999999988  8888766421   1                  


Q ss_pred             ChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          181 SQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       181 ~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                        .   ++.+.+.   ..|++|.++|.+.+ ---++++++..++.+|..
T Consensus       195 --~---~L~~~~~---~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          195 --R---DLPALTR---QADIVVAAVGVAHL-LTADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             --S---CHHHHHT---TCSEEEECSCCTTC-BCGGGSCTTCEEEECCEE
T ss_pred             --h---HHHHHHh---hCCEEEECCCCCcc-cCHHHcCCCcEEEEccCC
Confidence              0   1333333   39999999998754 222457888888888854

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.45  E-value=0.018  Score=48.49  Aligned_cols=97  Identities=15%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHH-HHh----CCCc-EEEecChhhHHHHHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEK-LKG----LGAD-EVFTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~----lg~~-~~~~~~~~~~~~i~~~~~~~g  196 (314)
                      .++++||+|+ |++|.+++..+...|+ +++++.+.. ...++.+. +.+    .+.. .+++..+  .+++.+...   
T Consensus       153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~-~~~~~a~~la~~~~~~~~~~~~~~~~~~--~~~l~~~l~---  225 (315)
T 3tnl_A          153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKD-DFYANAEKTVEKINSKTDCKAQLFDIED--HEQLRKEIA---  225 (315)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSS-TTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH---
T ss_pred             cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCC-chHHHHHHHHHHhhhhcCCceEEeccch--HHHHHhhhc---
Confidence            6899999999 8999999999999999 555555421 11333332 222    2322 2333332  122333333   


Q ss_pred             CCcEEEecCCCccHH------H-HHHhcccCCEEEEEc
Q 021311          197 EPALGFNCVGGNSAS------K-VLKFLSQGGTMVTYG  227 (314)
Q Consensus       197 ~~d~v~d~~g~~~~~------~-~~~~l~~~G~~v~~g  227 (314)
                      .+|+|++|++-....      . ....++++..++.+.
T Consensus       226 ~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~Dlv  263 (315)
T 3tnl_A          226 ESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVV  263 (315)
T ss_dssp             TCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESC
T ss_pred             CCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEec
Confidence            399999998743221      1 234456665555554

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.45  E-value=0.035  Score=47.47  Aligned_cols=94  Identities=15%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-----------------hH
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-----------------EV  185 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-----------------~~  185 (314)
                      -.|++|.|.|. |.+|+.+++.++.+|++++ +.+.   +..+.++.+.+++..+ +..+.                 +.
T Consensus       173 L~GktV~I~G~-GnVG~~~A~~l~~~GakVv-vsD~---~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~  246 (355)
T 1c1d_A          173 LDGLTVLVQGL-GAVGGSLASLAAEAGAQLL-VADT---DTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITT  246 (355)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECS---CHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCH
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EEeC---CccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCH
Confidence            47899999998 9999999999999999988 6654   4444555666776443 11110                 00


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          186 KNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      +.+..+     +.++|++++..+.. +.+.+.|..+|.++..+
T Consensus       247 ~~~~~l-----k~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          247 EVARTL-----DCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             HHHHHC-----CCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             HHHhhC-----CCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence            111111     36677777766665 36667777777665543

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.43  E-value=0.0069  Score=49.13  Aligned_cols=74  Identities=14%  Similarity=0.120  Sum_probs=45.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHH-cCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecCh-hhHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARH-RGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQ-LEVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~-~~~~~i~~~~~~~g~~d  199 (314)
                      .++++||+|+++++|.++++.+.. .|++++.+.+.....         ......+  |-.+ ..++++.+... .+++|
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~-~~~id   72 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIK-NVSFD   72 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTT-TCCEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHH-hCCCC
Confidence            467899999999999999876665 677777666432101         1111222  2222 22333333333 33599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        73 ~lv~nAg~   80 (244)
T 4e4y_A           73 GIFLNAGI   80 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999985

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.41  E-value=0.022  Score=51.36  Aligned_cols=86  Identities=17%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             CCCC--CEEEEcCCCcHHHHHHHHHHHHcCCcE-EEEecCCC---CcHHHHHHHHhCCCcEEE-ecChh---hHHHHHHH
Q 021311          122 LNSG--DSIVQNGATSIVGQCIIQIARHRGIHS-INIIRDRA---GSDEAKEKLKGLGADEVF-TESQL---EVKNVKGL  191 (314)
Q Consensus       122 ~~~~--~~vlI~g~~g~~G~~a~~la~~~g~~v-i~~~~~~~---~~~~~~~~~~~lg~~~~~-~~~~~---~~~~i~~~  191 (314)
                      ++++  +++||+|++|++|..+++.+...|++. +.+.+...   ...+..+.++..|....+ ..+-.   .++.+.+.
T Consensus       234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            3455  999999999999999998888889954 44444211   112334455667765433 22222   22333332


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....+++|.+|+++|.
T Consensus       314 i~~~g~ld~vVh~AGv  329 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGV  329 (496)
T ss_dssp             CCTTSCEEEEEECCCC
T ss_pred             HHHhCCCeEEEECCcc
Confidence            2222459999999985

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.41  E-value=0.004  Score=49.33  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=64.0

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHh----CCCc--EEEecChhhHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKG----LGAD--EVFTESQLEVKNVK  189 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~----lg~~--~~~~~~~~~~~~i~  189 (314)
                      +...+.++++||.+|+ | .|..+..+++..+  .+++++- .   ++...+.+++    .+..  .....+...  .  
T Consensus        71 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~--  140 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIGT-G-CGYHAAVTAEIVGEDGLVVSIE-R---IPELAEKAERTLRKLGYDNVIVIVGDGTL--G--  140 (215)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEE-S---CHHHHHHHHHHHHHHTCTTEEEEESCGGG--C--
T ss_pred             HhhCCCCCCEEEEECC-C-ccHHHHHHHHHhCCCCEEEEEe-C---CHHHHHHHHHHHHHcCCCCeEEEECCccc--C--
Confidence            4467889999999998 4 4888888988876  5565554 2   5666555543    2322  222222110  0  


Q ss_pred             HHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          190 GLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                       .... +.+|+|+.+...... ..+.+.|+++|+++..-.
T Consensus       141 -~~~~-~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          141 -YEPL-APYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             -CGGG-CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             -CCCC-CCeeEEEECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence             1111 249999988776554 788899999999988753

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.41  E-value=0.0079  Score=51.28  Aligned_cols=96  Identities=16%  Similarity=0.104  Sum_probs=57.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      .+|||+|++|.+|..+++.+...|.+++++.+.....    +.+...+.. .+..+-.+.+.+.+...   ++|+||.++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~l~~~~~~-~~~~Dl~d~~~~~~~~~---~~d~vih~a   85 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQI----QRLAYLEPE-CRVAEMLDHAGLERALR---GLDGVIFSA   85 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCG----GGGGGGCCE-EEECCTTCHHHHHHHTT---TCSEEEEC-
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhh----hhhccCCeE-EEEecCCCHHHHHHHHc---CCCEEEECC
Confidence            4799999999999999998888899999988653211    112222332 23233223344555544   399999999


Q ss_pred             CCcc----------------HHHHHHhccc-C-CEEEEEcCC
Q 021311          206 GGNS----------------ASKVLKFLSQ-G-GTMVTYGGM  229 (314)
Q Consensus       206 g~~~----------------~~~~~~~l~~-~-G~~v~~g~~  229 (314)
                      +...                ...+++.+.+ + +++|.+++.
T Consensus        86 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~  127 (342)
T 2x4g_A           86 GYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA  127 (342)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCG
T ss_pred             ccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCH
Confidence            8421                1234444433 3 689988754

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.015  Score=47.41  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=47.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHH-HhCCCcEE-E--ecChh-hHHH-HHHHhcCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKL-KGLGADEV-F--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      ++++||+|+++++|.++++.+...|  +.++.+.+    ++++.+.+ +.++.... +  |-.+. .+++ +.+.....|
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVAR----SEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEES----CHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecC----CHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999987766664  67766664    44444433 33443322 2  22222 2222 222222223


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        78 ~id~lvnnAg~   88 (254)
T 3kzv_A           78 KIDSLVANAGV   88 (254)
T ss_dssp             CCCEEEEECCC
T ss_pred             CccEEEECCcc
Confidence            59999999985

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.39  E-value=0.008  Score=50.82  Aligned_cols=99  Identities=12%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCc---EEEecChhhHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGAD---EVFTESQLEVK  186 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~---~~~~~~~~~~~  186 (314)
                      ..+.....+.++++||-+|+ |. |..+..+++..|++++++.-    +++..+.+++    .|..   .++..+-    
T Consensus        80 ~~~~~~~~~~~~~~vLDiGc-G~-G~~~~~la~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~v~~~~~d~----  149 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGC-GW-GTTMRRAVERFDVNVIGLTL----SKNQHARCEQVLASIDTNRSRQVLLQGW----  149 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESC-TT-SHHHHHHHHHHCCEEEEEES----CHHHHHHHHHHHHTSCCSSCEEEEESCG----
T ss_pred             HHHHHhcCCCCcCEEEEEcc-cc-hHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCCCceEEEECCh----
Confidence            34445567889999999998 44 88888888887887777663    6666666543    3322   1221111    


Q ss_pred             HHHHHhcCCCCCcEEEec-----CCCc----cHHHHHHhcccCCEEEEEc
Q 021311          187 NVKGLLANLPEPALGFNC-----VGGN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~-----~g~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                        .++ .  +.+|+|+.+     .+.+    .+..+.+.|+|+|+++...
T Consensus       150 --~~~-~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          150 --EDF-A--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             --GGC-C--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             --HHC-C--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence              111 1  259999976     3322    2367788999999998765

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.39  E-value=0.0088  Score=50.18  Aligned_cols=100  Identities=13%  Similarity=0.099  Sum_probs=65.5

Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVK  186 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~  186 (314)
                      ..+.....++++.+||-+|+ | .|..+..+++..|++++++.-    +++..+.++    ..|..   .++..+-    
T Consensus        62 ~~~~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~v~~~~~d~----  131 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGC-G-WGSTMRHAVAEYDVNVIGLTL----SENQYAHDKAMFDEVDSPRRKEVRIQGW----  131 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEEC----CHHHHHHHHHHHHHSCCSSCEEEEECCG----
T ss_pred             HHHHHHcCCCCcCEEEEeec-c-CcHHHHHHHHhCCCEEEEEEC----CHHHHHHHHHHHHhcCCCCceEEEECCH----
Confidence            34455577899999999998 4 388888999988888776663    566665554    33432   1222221    


Q ss_pred             HHHHHhcCCCCCcEEEecCCC----------------ccHHHHHHhcccCCEEEEEcC
Q 021311          187 NVKGLLANLPEPALGFNCVGG----------------NSASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~g~  228 (314)
                        .++ .  +.+|+|+....-                ..+..+.+.|+|+|++++...
T Consensus       132 --~~~-~--~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          132 --EEF-D--EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             --GGC-C--CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             --HHc-C--CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence              112 2  259999875432                123678889999999998763

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.38  E-value=0.022  Score=51.31  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCc---HHHHHHHHhCCCcEE-EecChhhHHHHHHH---hc
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGS---DEAKEKLKGLGADEV-FTESQLEVKNVKGL---LA  193 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~---~~~~~~~~~lg~~~~-~~~~~~~~~~i~~~---~~  193 (314)
                      ++++.++||+|++|.+|..+++.+...|++ ++.+.+.....   .+..+.++..|.... +..+-.+.+.+.+.   ..
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~  302 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG  302 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            578899999999999999999888888996 66666532111   122334555665432 22222222223222   22


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+.+|.||.++|.
T Consensus       303 ~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          303 DDVPLSAVFHAAAT  316 (486)
T ss_dssp             TTSCEEEEEECCCC
T ss_pred             hcCCCcEEEECCcc
Confidence            23458999999984

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.38  E-value=0.0087  Score=48.79  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=29.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      +.+|+|.|+ |++|..+++.+...|...+.+++.+
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            479999999 9999999999999999888888764

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.35  E-value=0.0021  Score=54.11  Aligned_cols=122  Identities=11%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             hcccccHHHHHHHHHHh--------hc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC
Q 021311          103 ATIIVNPLTALRMLEDF--------TT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG  173 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~--------~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg  173 (314)
                      ..+|++...+...+.+.        .+ --.|++++|+|++..+|..+++++...|++++++-+.   .....+....++
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~---~~~l~~ra~~la  222 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN---NIQKFTRGESLK  222 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS---EEEEEESCCCSS
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc---hHHHHhHHHHHh
Confidence            45566666666666552        12 2368999999995567999999999999997766431   111111112232


Q ss_pred             Cc-EEE-ecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          174 AD-EVF-TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       174 ~~-~~~-~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .. +.. .......+++.+.+..   +|+||.++|.+..----++++++..++.+|...
T Consensus       223 ~~~~~~t~~~~t~~~~L~e~l~~---ADIVIsAtg~p~~vI~~e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          223 LNKHHVEDLGEYSEDLLKKCSLD---SDVVITGVPSENYKFPTEYIKEGAVCINFACTK  278 (320)
T ss_dssp             CCCCEEEEEEECCHHHHHHHHHH---CSEEEECCCCTTCCBCTTTSCTTEEEEECSSSC
T ss_pred             hhcccccccccccHhHHHHHhcc---CCEEEECCCCCcceeCHHHcCCCeEEEEcCCCc
Confidence            21 100 0000001234444443   999999999864311123468888888888543

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.32  E-value=0.032  Score=48.59  Aligned_cols=83  Identities=8%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHH-HcCCcEEEEecCCCCc--------HHHHH-HHHhCC------C---cEEEecChhhH
Q 021311          125 GDSIVQNGATSIVGQCIIQIAR-HRGIHSINIIRDRAGS--------DEAKE-KLKGLG------A---DEVFTESQLEV  185 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~-~~g~~vi~~~~~~~~~--------~~~~~-~~~~lg------~---~~~~~~~~~~~  185 (314)
                      +.+|||+|++|.+|..+++.+. ..|.+|+++.+.....        .+... .++.+.      .   ...+..+-.+.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            3579999999999999998887 8899999887643221        12221 123331      1   22333332223


Q ss_pred             HHHHHHhcCCCCCcEEEecCCC
Q 021311          186 KNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      +.+.+.....+.+|+||.+++.
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~  103 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAF  103 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCc
Confidence            3444443322249999999985

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.32  E-value=0.019  Score=48.88  Aligned_cols=80  Identities=13%  Similarity=0.202  Sum_probs=47.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC---c-EEEecChhhHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA---D-EVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~-~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      .+++|||+|++|.+|..++..+...|.+|+++++... ...+...+..+..   . ..+..+-.+.+.+.+...   ++|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d   79 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPT-NVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK---GCT   79 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTT-CHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT---TCS
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcc-hhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc---CCC
Confidence            4689999999999999999888888999998886432 1122222222321   1 122221111122333332   389


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +||.+++.
T Consensus        80 ~Vih~A~~   87 (337)
T 2c29_D           80 GVFHVATP   87 (337)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeccc
Confidence            99998863

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=96.32  E-value=0.011  Score=50.81  Aligned_cols=77  Identities=12%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCC-CcHHHHHHHHhC--C-CcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRA-GSDEAKEKLKGL--G-ADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~-~~~~~~~~~~~l--g-~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      +|||+|++|.+|..+++.+... |.+++++.+... ...+.   +..+  + ....+..+-.+.+.+.+..... ++|+|
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~v   77 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES---LSDISESNRYNFEHADICDSAEITRIFEQY-QPDAV   77 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhh---hhhhhcCCCeEEEECCCCCHHHHHHHHhhc-CCCEE
Confidence            5999999999999998777766 788888875421 11111   2222  1 1122322222233444433311 39999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      |.+++.
T Consensus        78 ih~A~~   83 (361)
T 1kew_A           78 MHLAAE   83 (361)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            999985

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.29  E-value=0.022  Score=47.57  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=60.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .++|||+|++|.+|..+++.+...| .+++++++...  ......+...+... +..+-.+.+.+.+...+   +|+||.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~--~~~~~~l~~~~~~~-~~~D~~d~~~l~~~~~~---~d~vi~   78 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR--KKAAKELRLQGAEV-VQGDQDDQVIMELALNG---AYATFI   78 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT--SHHHHHHHHTTCEE-EECCTTCHHHHHHHHTT---CSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC--CHHHHHHHHCCCEE-EEecCCCHHHHHHHHhc---CCEEEE
Confidence            4789999999999999998888778 89998887532  11122333345433 32332233455555543   999999


Q ss_pred             cCCCc----------cHHHHHHhccc--CCEEEEEcC
Q 021311          204 CVGGN----------SASKVLKFLSQ--GGTMVTYGG  228 (314)
Q Consensus       204 ~~g~~----------~~~~~~~~l~~--~G~~v~~g~  228 (314)
                      +++..          ....+++.++.  -+++|..+.
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~  115 (299)
T 2wm3_A           79 VTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGL  115 (299)
T ss_dssp             CCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             eCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            98741          11344444433  258887553

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.27  E-value=0.0057  Score=47.71  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=59.8

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHH----hCCC--c-EEEecChhhHHHHHH
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLK----GLGA--D-EVFTESQLEVKNVKG  190 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~----~lg~--~-~~~~~~~~~~~~i~~  190 (314)
                      ..++++++||-.|+ |. |..+..+++..+  .++++ ++.   ++...+.++    ..|.  . .++..+-.   .+..
T Consensus        18 ~~~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~v~~-vD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~   88 (197)
T 3eey_A           18 MFVKEGDTVVDATC-GN-GNDTAFLASLVGENGRVFG-FDI---QDKAIANTTKKLTDLNLIDRVTLIKDGHQ---NMDK   88 (197)
T ss_dssp             HHCCTTCEEEESCC-TT-SHHHHHHHHHHCTTCEEEE-ECS---CHHHHHHHHHHHHHTTCGGGEEEECSCGG---GGGG
T ss_pred             hcCCCCCEEEEcCC-CC-CHHHHHHHHHhCCCCEEEE-EEC---CHHHHHHHHHHHHHcCCCCCeEEEECCHH---HHhh
Confidence            56889999999998 43 788888888864  44444 443   566655553    3333  1 22222211   1211


Q ss_pred             HhcCCCCCcEEEecCCC----------------ccHHHHHHhcccCCEEEEEc
Q 021311          191 LLANLPEPALGFNCVGG----------------NSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~g  227 (314)
                      ...  +.+|+|+-+.+.                ..+..+.+.|+++|+++...
T Consensus        89 ~~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           89 YID--CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             TCC--SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcc--CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            122  259999876533                23478889999999998775

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.27  E-value=0.0077  Score=47.28  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=44.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +++||+|++|.+|..+++.+...  +++++.+    ++++.+.+ ..++. ..+..+-.+.+.+.+.....+++|+++.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r----~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGR----RAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECS----CHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEEC----CHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence            47899999999999888776655  7776664    34443333 23333 33322222223333332212259999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      +|.
T Consensus        74 ag~   76 (207)
T 2yut_A           74 VGK   76 (207)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            984

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.24  E-value=0.024  Score=47.70  Aligned_cols=87  Identities=17%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...++.++.+|+++++..+.    .+. +.+.+.|....      ..+++   ..   ..|+|+.
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~----~~~-~~~~~~g~~~~------~l~el---l~---~aDvV~l  202 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGMNILLYDPY----PNE-ERAKEVNGKFV------DLETL---LK---ESDVVTI  202 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS----CCH-HHHHHTTCEEC------CHHHH---HH---HCSEEEE
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCCEEEEECCC----CCh-hhHhhcCcccc------CHHHH---Hh---hCCEEEE
Confidence            5789999999 999999999999999998877643    222 34556776421      12222   21   2899999


Q ss_pred             cCCCcc-----H-HHHHHhcccCCEEEEEcC
Q 021311          204 CVGGNS-----A-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       204 ~~g~~~-----~-~~~~~~l~~~G~~v~~g~  228 (314)
                      ++....     + ...+..|++++.++.++.
T Consensus       203 ~~p~~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          203 HVPLVESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             CCCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             ecCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence            887532     2 567789999999998873

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=96.23  E-value=0.017  Score=49.27  Aligned_cols=77  Identities=12%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCC-cHHHHHHHHhCC-C-cEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAG-SDEAKEKLKGLG-A-DEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~-~~~~~~~~~~lg-~-~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .+|||+|++|.+|..+++.+...  |.+++++.+.... ..+   .+..+. . ...+..+-.+.+.+.+...+   +|+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~d~   78 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA---NLEAILGDRVELVVGDIADAELVDKLAAK---ADA   78 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG---GTGGGCSSSEEEEECCTTCHHHHHHHHTT---CSE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChh---HHhhhccCCeEEEECCCCCHHHHHHHhhc---CCE
Confidence            58999999999999999887777  7899888764211 111   122221 1 12222222233455555543   899


Q ss_pred             EEecCCCc
Q 021311          201 GFNCVGGN  208 (314)
Q Consensus       201 v~d~~g~~  208 (314)
                      ||.|++..
T Consensus        79 vih~A~~~   86 (348)
T 1oc2_A           79 IVHYAAES   86 (348)
T ss_dssp             EEECCSCC
T ss_pred             EEECCccc
Confidence            99999853

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.20  E-value=0.0087  Score=48.93  Aligned_cols=102  Identities=15%  Similarity=0.077  Sum_probs=66.7

Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc----EEEecChhhHHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD----EVFTESQLEVKNVK  189 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~----~~~~~~~~~~~~i~  189 (314)
                      ..+.....++++.+||-.|+ | .|..+..+++..+++++++-    .++...+.+++....    ..+..+-.      
T Consensus        45 ~~~~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~v~~vD----~s~~~~~~a~~~~~~~~~~~~~~~d~~------  112 (266)
T 3ujc_A           45 KKILSDIELNENSKVLDIGS-G-LGGGCMYINEKYGAHTHGID----ICSNIVNMANERVSGNNKIIFEANDIL------  112 (266)
T ss_dssp             HHHTTTCCCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEE----SCHHHHHHHHHTCCSCTTEEEEECCTT------
T ss_pred             HHHHHhcCCCCCCEEEEECC-C-CCHHHHHHHHHcCCEEEEEe----CCHHHHHHHHHHhhcCCCeEEEECccc------
Confidence            33444467889999999998 3 68888888887788777766    377778888765432    11211111      


Q ss_pred             HHhcCCCCCcEEEecCCCcc---------HHHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGGNS---------ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~---------~~~~~~~l~~~G~~v~~g  227 (314)
                      +.....+.+|+|+.+..-..         +..+.+.|+|+|+++...
T Consensus       113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            11111125999998654322         367788999999999875

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.20  E-value=0.0094  Score=50.18  Aligned_cols=34  Identities=15%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +++|||+|++|.+|..+++.+...|.+|+++.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFR   35 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccC
Confidence            4789999999999999999888889999888753

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=96.19  E-value=0.015  Score=50.49  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      ++|||+|++|.+|..++..+...|.+|+++.+..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~   62 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   62 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCC
Confidence            6899999999999999998888899999988653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.17  E-value=0.045  Score=44.64  Aligned_cols=123  Identities=15%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             ccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH
Q 021311           87 QSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK  166 (314)
Q Consensus        87 ~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~  166 (314)
                      ....+.++++..+....- + +.......+.+.  ++++++||-.|+ |. |..++.+++ .|++++++- .   ++...
T Consensus        87 ~~~~~~l~p~~~fgtg~~-~-tt~~~~~~l~~~--~~~~~~VLDiGc-G~-G~l~~~la~-~g~~v~gvD-i---~~~~v  155 (254)
T 2nxc_A           87 AEIPLVIEPGMAFGTGHH-E-TTRLALKALARH--LRPGDKVLDLGT-GS-GVLAIAAEK-LGGKALGVD-I---DPMVL  155 (254)
T ss_dssp             SSEEEECCCC-----CCS-H-HHHHHHHHHHHH--CCTTCEEEEETC-TT-SHHHHHHHH-TTCEEEEEE-S---CGGGH
T ss_pred             CceEEEECCCccccCCCC-H-HHHHHHHHHHHh--cCCCCEEEEecC-CC-cHHHHHHHH-hCCeEEEEE-C---CHHHH
Confidence            345667777654433211 1 111223334332  688999999998 44 777776666 577555554 3   44444


Q ss_pred             HHHH----hCCCc-EEEecChhhHHHHHHHhcCCCCCcEEEecCCCc----cHHHHHHhcccCCEEEEEc
Q 021311          167 EKLK----GLGAD-EVFTESQLEVKNVKGLLANLPEPALGFNCVGGN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       167 ~~~~----~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      +.++    ..+.. .+...+   ...   ..... .+|+|+.+.-..    .+..+.+.|+|+|+++..+
T Consensus       156 ~~a~~n~~~~~~~v~~~~~d---~~~---~~~~~-~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          156 PQAEANAKRNGVRPRFLEGS---LEA---ALPFG-PFDLLVANLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             HHHHHHHHHTTCCCEEEESC---HHH---HGGGC-CEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCcEEEEECC---hhh---cCcCC-CCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            4443    34432 222211   111   11122 599999765332    2367778999999999865

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.17  E-value=0.0026  Score=50.09  Aligned_cols=142  Identities=13%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             CCCCCEEeeCCCCCCcccceEe-eeccceEEcCCCCCHHHhhcccccHHHHHHHHHHh-hcCCCCCEEEEcCCCcHHHHH
Q 021311           63 LAPGDWVIPSPPSSGTWQSYVV-KDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF-TTLNSGDSIVQNGATSIVGQC  140 (314)
Q Consensus        63 ~~~Gd~V~~~~~~~g~~~~~~~-~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~g~~g~~G~~  140 (314)
                      ++.|+.+...+    .|.+|.. .+....+.+++++.+..+.     ..+.-..+..+ ..++++.+||-.|+ |. |..
T Consensus         6 ~~~~~~~~~~p----~w~~~~~~~~~~~~~~~~~~~~f~~~~-----~~~~~~~~~~l~~~~~~~~~vLDiG~-G~-G~~   74 (205)
T 3grz_A            6 INLSRHLAIVP----EWEDYQPVFKDQEIIRLDPGLAFGTGN-----HQTTQLAMLGIERAMVKPLTVADVGT-GS-GIL   74 (205)
T ss_dssp             EEEETTEEEEE----TTCCCCCSSTTCEEEEESCC-----CC-----HHHHHHHHHHHHHHCSSCCEEEEETC-TT-SHH
T ss_pred             EEECCcEEEec----cccccccCCCCceeEEecCCcccCCCC-----CccHHHHHHHHHHhccCCCEEEEECC-CC-CHH
Confidence            44456555443    5677766 6778888888887665542     11111111111 12678999999998 43 677


Q ss_pred             HHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCc--EEEecChhhHHHHHHHhcCCCCCcEEEecCCCcc----H
Q 021311          141 IIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGAD--EVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS----A  210 (314)
Q Consensus       141 a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~--~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~----~  210 (314)
                      +..+++ .+...+..++.   ++...+.+++    .+..  .++..+-..      ...  +.+|+|+.+.....    +
T Consensus        75 ~~~l~~-~~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~~------~~~--~~fD~i~~~~~~~~~~~~l  142 (205)
T 3grz_A           75 AIAAHK-LGAKSVLATDI---SDESMTAAEENAALNGIYDIALQKTSLLA------DVD--GKFDLIVANILAEILLDLI  142 (205)
T ss_dssp             HHHHHH-TTCSEEEEEES---CHHHHHHHHHHHHHTTCCCCEEEESSTTT------TCC--SCEEEEEEESCHHHHHHHG
T ss_pred             HHHHHH-CCCCEEEEEEC---CHHHHHHHHHHHHHcCCCceEEEeccccc------cCC--CCceEEEECCcHHHHHHHH
Confidence            777666 46644444543   5665555532    3432  222222111      111  25999997765433    2


Q ss_pred             HHHHHhcccCCEEEEEc
Q 021311          211 SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       211 ~~~~~~l~~~G~~v~~g  227 (314)
                      ..+.+.|+++|+++...
T Consensus       143 ~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          143 PQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             GGSGGGEEEEEEEEEEE
T ss_pred             HHHHHhcCCCCEEEEEe
Confidence            55667889999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.17  E-value=0.12  Score=38.30  Aligned_cols=96  Identities=17%  Similarity=0.091  Sum_probs=60.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH---hCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK---GLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~---~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .++++|+|+ |.+|...++.+...|.+++++.+.   .+++.+.+.   ..|. .++..+..+.+.+.+..-.  ++|++
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~---~~~~~~~~~~~~~~~~-~~i~gd~~~~~~l~~a~i~--~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNL---PEDDIKQLEQRLGDNA-DVIPGDSNDSSVLKKAGID--RCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECC---CHHHHHHHHHHHCTTC-EEEESCTTSHHHHHHHTTT--TCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECC---ChHHHHHHHHhhcCCC-eEEEcCCCCHHHHHHcChh--hCCEE
Confidence            568999998 999999999999999998888742   234333332   2343 3343333333344443112  49999


Q ss_pred             EecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          202 FNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      +-+++.+..    ....+.+.+..+++...
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           76 LALSDNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EEecCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            999988654    23344555666776654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.16  E-value=0.035  Score=47.60  Aligned_cols=87  Identities=15%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...++.++.+|.++++..+    + .+.+.+...|...+    + ..+++   ..   ..|+|+.
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~----~-~~~~~~~~~g~~~~----~-~l~el---l~---~aDiV~l  221 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGMNVLVWGR----E-NSKERARADGFAVA----E-SKDAL---FE---QSDVLSV  221 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----H-HHHHHHHHTTCEEC----S-SHHHH---HH---HCSEEEE
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEECC----C-CCHHHHHhcCceEe----C-CHHHH---Hh---hCCEEEE
Confidence            4789999999 99999999999999999887763    3 34455566776421    1 11222   22   2899998


Q ss_pred             cCCCc-c----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGN-S----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~-~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++... .    . ...+..|+++..+|.++
T Consensus       222 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          222 HLRLNDETRSIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             eccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence            88642 1    2 57788899999999887

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=96.15  E-value=0.022  Score=53.75  Aligned_cols=83  Identities=7%  Similarity=0.084  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH---hCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK---GLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~---~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .+++|||+||+|.+|..+++.+...|.+|+++.+......+..+.+.   ..+... +..+-.+.+.+.+.....+ +|+
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~-v~~Dl~d~~~l~~~~~~~~-~D~   87 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPF-YEVDLCDRKGLEKVFKEYK-IDS   87 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCE-EECCTTCHHHHHHHHHHSC-CCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEE-EEcCCCCHHHHHHHHHhCC-CCE
Confidence            46899999999999999998888889999988865332222222222   223322 2222222233444333223 999


Q ss_pred             EEecCCCc
Q 021311          201 GFNCVGGN  208 (314)
Q Consensus       201 v~d~~g~~  208 (314)
                      ||.+++..
T Consensus        88 Vih~A~~~   95 (699)
T 1z45_A           88 VIHFAGLK   95 (699)
T ss_dssp             EEECCSCC
T ss_pred             EEECCccc
Confidence            99999853

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.13  E-value=0.016  Score=46.82  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             hhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHH----hCCCcE---EEecChhhHHHHH
Q 021311          119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLK----GLGADE---VFTESQLEVKNVK  189 (314)
Q Consensus       119 ~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~----~lg~~~---~~~~~~~~~~~i~  189 (314)
                      .....++++||-+|+ | .|..+..+++..+  .+++++- .   ++...+.++    ..|...   ++..+.  .+.+.
T Consensus        55 l~~~~~~~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~~~  126 (239)
T 2hnk_A           55 LTKISGAKRIIEIGT-F-TGYSSLCFASALPEDGKILCCD-V---SEEWTNVARKYWKENGLENKIFLKLGSA--LETLQ  126 (239)
T ss_dssp             HHHHHTCSEEEEECC-T-TCHHHHHHHHHSCTTCEEEEEE-S---CHHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHH
T ss_pred             HHHhhCcCEEEEEeC-C-CCHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCCCEEEEECCH--HHHHH
Confidence            345668899999998 4 5888889999874  5555554 2   555555553    345421   222221  11122


Q ss_pred             HHhcC------------C-CCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          190 GLLAN------------L-PEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~------------~-g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      .....            . +.||+|+.......    +..+.+.|+++|.++...
T Consensus       127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            22111            0 25999998766543    367888999999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.10  E-value=0.067  Score=38.74  Aligned_cols=93  Identities=14%  Similarity=0.125  Sum_probs=56.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +.+|+|+|+ |.+|..+++.+...|.+++++.+    ++++.+.+. .++... +..+....+.+.+..- . ++|+++.
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~----~~~~~~~~~~~~~~~~-~~~d~~~~~~l~~~~~-~-~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDI----DKDICKKASAEIDALV-INGDCTKIKTLEDAGI-E-DADMYIA   75 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHCSSEE-EESCTTSHHHHHHTTT-T-TCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEC----CHHHHHHHHHhcCcEE-EEcCCCCHHHHHHcCc-c-cCCEEEE
Confidence            357999998 99999999988888988777663    555555554 355433 3222222223332211 1 4999999


Q ss_pred             cCCCccH----HHHHHhcccCCEEEEE
Q 021311          204 CVGGNSA----SKVLKFLSQGGTMVTY  226 (314)
Q Consensus       204 ~~g~~~~----~~~~~~l~~~G~~v~~  226 (314)
                      |++....    ....+.+.+ ++++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~-~~ii~~  101 (140)
T 1lss_A           76 VTGKEEVNLMSSLLAKSYGI-NKTIAR  101 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHTTC-CCEEEE
T ss_pred             eeCCchHHHHHHHHHHHcCC-CEEEEE
Confidence            9987543    223334444 355544

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.07  E-value=0.0092  Score=50.36  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      |++|||+||+|.+|..++..+...|.+|+++.+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            578999999999999999988888999988875

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.06  E-value=0.014  Score=48.47  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=29.9

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .-.+.++|||+|++|.+|..+++.+...|.+++++.+
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   44 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDV   44 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECT
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCCeEEeccC
Confidence            3457789999999999999999988888988888774

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.06  E-value=0.025  Score=50.79  Aligned_cols=38  Identities=18%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHc---CCcEEEEecCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHR---GIHSINIIRDR  159 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~---g~~vi~~~~~~  159 (314)
                      ...+++|||+|++|.+|..+++.+...   |.+++++++..
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~  110 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE  110 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence            356789999999999999998777766   89999999764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.05  E-value=0.072  Score=44.56  Aligned_cols=93  Identities=16%  Similarity=0.079  Sum_probs=59.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCc--EEEecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGAD--EVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~--~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .+++++|+|+ |++|.+++..+...|+..+.++..   +.++. +.++.++..  .+.+     .+.+.+...   ++|+
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR---~~~ka~~la~~~~~~~~~~~~-----~~~~~~~~~---~aDi  207 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANR---TVEKAERLVREGDERRSAYFS-----LAEAETRLA---EYDI  207 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECS---SHHHHHHHHHHSCSSSCCEEC-----HHHHHHTGG---GCSE
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeC---CHHHHHHHHHHhhhccCceee-----HHHHHhhhc---cCCE
Confidence            5789999999 899999999999999844444432   44443 445566642  2221     123333333   3999


Q ss_pred             EEecCCCccHH------HHHHhcccCCEEEEEcC
Q 021311          201 GFNCVGGNSAS------KVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       201 v~d~~g~~~~~------~~~~~l~~~G~~v~~g~  228 (314)
                      |++|++.....      .....++++..++.+..
T Consensus       208 vIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          208 IINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             EEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             EEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            99999875421      11245667777777763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.02  E-value=0.042  Score=48.87  Aligned_cols=94  Identities=16%  Similarity=0.157  Sum_probs=55.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +++|+|+|+ |.+|.++++.+...|.+++++.+    +.++.+.+ ..++....+..+-.+.+.+.+...   ++|+|++
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~~V~v~~R----~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~---~~DvVIn   74 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACR----TLESAKKLSAGVQHSTPISLDVNDDAALDAEVA---KHDLVIS   74 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEES----SHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT---TSSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcCEEEEEEC----CHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc---CCcEEEE
Confidence            578999985 99999999888888988666553    44444333 234322222222222234444443   3999999


Q ss_pred             cCCCccH-HHHHHhcccCCEEEEE
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMVTY  226 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v~~  226 (314)
                      |++.... .....++.++-.++..
T Consensus        75 ~a~~~~~~~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           75 LIPYTFHATVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             CCC--CHHHHHHHHHHHTCEEEES
T ss_pred             CCccccchHHHHHHHhCCCeEEEe
Confidence            9986443 2344556666565544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.01  E-value=0.067  Score=46.99  Aligned_cols=96  Identities=10%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+.+|+|+|. |.+|+.+++.++..|..++++..    ++++.+.++..|...++ .+....+.++.. +-. ++|+++-
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~----d~~~v~~~~~~g~~vi~-GDat~~~~L~~a-gi~-~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDH----DPDHIETLRKFGMKVFY-GDATRMDLLESA-GAA-KAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEEC----CHHHHHHHHHTTCCCEE-SCTTCHHHHHHT-TTT-TCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEEC----CHHHHHHHHhCCCeEEE-cCCCCHHHHHhc-CCC-ccCEEEE
Confidence            4567999999 99999999999999999888873    78888888888875433 333333334443 222 4999999


Q ss_pred             cCCCccH----HHHHHhcccCCEEEEEc
Q 021311          204 CVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      +.+.+..    ....+.+.+..+++...
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            9988654    34455667777887765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.01  E-value=0.014  Score=46.60  Aligned_cols=98  Identities=9%  Similarity=0.030  Sum_probs=61.2

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcC------CcEEEEecCCCCcHHHHHHHHh----CC-------CcEEEecChh
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRG------IHSINIIRDRAGSDEAKEKLKG----LG-------ADEVFTESQL  183 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g------~~vi~~~~~~~~~~~~~~~~~~----lg-------~~~~~~~~~~  183 (314)
                      .++++++||-+|+ |. |..+..+++..+      .+++++- .   +++..+.+++    .+       ...++..+..
T Consensus        77 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  150 (227)
T 2pbf_A           77 VLKPGSRAIDVGS-GS-GYLTVCMAIKMNVLENKNSYVIGLE-R---VKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY  150 (227)
T ss_dssp             TSCTTCEEEEESC-TT-SHHHHHHHHHTTTTTCTTCEEEEEE-S---CHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred             hCCCCCEEEEECC-CC-CHHHHHHHHHhcccCCCCCEEEEEe-C---CHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence            5889999999998 44 888888888876      4565554 2   5665555532    23       1122222211


Q ss_pred             h-HHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          184 E-VKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       184 ~-~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      . ..... ...+  .||+|+.......+ ..+.+.|+++|+++..-
T Consensus       151 ~~~~~~~-~~~~--~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          151 QVNEEEK-KELG--LFDAIHVGASASELPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             GCCHHHH-HHHC--CEEEEEECSBBSSCCHHHHHHEEEEEEEEEEE
T ss_pred             hcccccC-ccCC--CcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            1 00000 0112  49999987766544 88889999999998775

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=95.99  E-value=0.005  Score=49.56  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNVK  189 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i~  189 (314)
                      ......++++||-.|+ | .|..+..+++.. +.+++++- .   ++...+.++    ..|..   .++..+...  .+.
T Consensus        48 ~~~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~  119 (233)
T 2gpy_A           48 HLLKMAAPARILEIGT-A-IGYSAIRMAQALPEATIVSIE-R---DERRYEEAHKHVKALGLESRIELLFGDALQ--LGE  119 (233)
T ss_dssp             HHHHHHCCSEEEEECC-T-TSHHHHHHHHHCTTCEEEEEC-C---CHHHHHHHHHHHHHTTCTTTEEEECSCGGG--SHH
T ss_pred             HHHhccCCCEEEEecC-C-CcHHHHHHHHHCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCCcEEEEECCHHH--HHH
Confidence            3345678899999998 4 688888899887 45555444 3   566655554    33432   222222111  111


Q ss_pred             HHhcCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      ..... +.||+|+.......    +..+.+.|+++|+++...
T Consensus       120 ~~~~~-~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          120 KLELY-PLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             HHTTS-CCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             hcccC-CCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            12111 25999997766432    367778999999998764

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=95.96  E-value=0.015  Score=50.15  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=29.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +++|||+|++|.+|..+++.+...|.+++++.+.
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   34 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            3689999999999999998888889999888754

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.046  Score=48.84  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHH-hCCCcE-EEecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLK-GLGADE-VFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~-~lg~~~-~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      .+++|+|+|+ |.+|.+++..+... +.+++++.+    +.++.+.+. ..+... .+|..+  .+.+.+...   ++|+
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R----~~~ka~~la~~~~~~~~~~D~~d--~~~l~~~l~---~~Dv   91 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACR----TLANAQALAKPSGSKAISLDVTD--DSALDKVLA---DNDV   91 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEES----SHHHHHHHHGGGTCEEEECCTTC--HHHHHHHHH---TSSE
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHhcCCcEEEEecCC--HHHHHHHHc---CCCE
Confidence            3578999998 99999999888877 566555553    445544433 323322 123222  233444443   3999


Q ss_pred             EEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          201 GFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       201 v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      |++|++.... .....+++++-.++...
T Consensus        92 VIn~tp~~~~~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A           92 VISLIPYTFHPNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             EEECSCGGGHHHHHHHHHHHTCEEEECS
T ss_pred             EEECCchhhhHHHHHHHHhcCCEEEEee
Confidence            9999987543 23445677777777653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.95  E-value=0.027  Score=45.28  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=30.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++++||+|++|.+|..+++.+...|++++++.+.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   35 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLR   35 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccC
Confidence            5789999999999999998888889999988864

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=95.93  E-value=0.016  Score=47.20  Aligned_cols=101  Identities=15%  Similarity=0.167  Sum_probs=60.4

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNV  188 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i  188 (314)
                      .+....++++||-+|++  .|..+..+++..+  .+++++- .   +++..+.++    ..|..   .++..+.  .+.+
T Consensus        57 ~l~~~~~~~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD-~---s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~~l  128 (248)
T 3tfw_A           57 LLVRLTQAKRILEIGTL--GGYSTIWMARELPADGQLLTLE-A---DAHHAQVARENLQLAGVDQRVTLREGPA--LQSL  128 (248)
T ss_dssp             HHHHHHTCSEEEEECCT--TSHHHHHHHTTSCTTCEEEEEE-C---CHHHHHHHHHHHHHTTCTTTEEEEESCH--HHHH
T ss_pred             HHHhhcCCCEEEEecCC--chHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHH
Confidence            33456688999999983  3888888888874  4555544 3   566655553    34533   1222221  1112


Q ss_pred             HHHhcCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          189 KGLLANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      ... .+.+.||+||-......    +..+.+.|+|+|.++.-.
T Consensus       129 ~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          129 ESL-GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             HTC-CSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             Hhc-CCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            222 22225999995444322    377889999999988754

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=95.90  E-value=0.041  Score=43.87  Aligned_cols=99  Identities=20%  Similarity=0.154  Sum_probs=58.0

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHH----HhCCCc---EEEecChhhHHHHHH
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKL----KGLGAD---EVFTESQLEVKNVKG  190 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~----~~lg~~---~~~~~~~~~~~~i~~  190 (314)
                      .+.+++.+||-+|+  +.|..++.+++.+  +.+++++- .   +++..+.+    +..|..   ..+...+  ..++..
T Consensus        52 ~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~g~~~~~i~~~~gd--a~~~l~  123 (221)
T 3dr5_A           52 TNGNGSTGAIAITP--AAGLVGLYILNGLADNTTLTCID-P---ESEHQRQAKALFREAGYSPSRVRFLLSR--PLDVMS  123 (221)
T ss_dssp             SCCTTCCEEEEEST--THHHHHHHHHHHSCTTSEEEEEC-S---CHHHHHHHHHHHHHTTCCGGGEEEECSC--HHHHGG
T ss_pred             hCCCCCCCEEEEcC--CchHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCcCcEEEEEcC--HHHHHH
Confidence            34445569998887  4688888899876  45555444 3   55555555    344533   1111111  111211


Q ss_pred             HhcCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          191 LLANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      .... +.||+||-......    +..+.+.|+|||.++.-.
T Consensus       124 ~~~~-~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          124 RLAN-DSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             GSCT-TCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             HhcC-CCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            1111 25999987655432    377889999999998743

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.89  E-value=0.024  Score=48.11  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCC-CcHHHHHHHHhC--CCc-EEEecChhhHHHHHHHhcCCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRA-GSDEAKEKLKGL--GAD-EVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~-~~~~~~~~~~~l--g~~-~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      +.+|||+|++|.+|..++..+...|  .+++++.+... ...+.   +..+  +.. ..+..+-.+.+.+.+...   ++
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~   76 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPAN---LKDLEDDPRYTFVKGDVADYELVKELVR---KV   76 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHH---TC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhH---HhhhccCCceEEEEcCCCCHHHHHHHhh---CC
Confidence            3579999999999999998777776  78888775421 11111   2222  111 222222222334555443   49


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+||.+++.
T Consensus        77 d~vih~A~~   85 (336)
T 2hun_A           77 DGVVHLAAE   85 (336)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999986

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=95.88  E-value=0.013  Score=49.65  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             CCCEEEEcCC--CcHHHHHHHHHHHHcCCcEEEEe
Q 021311          124 SGDSIVQNGA--TSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       124 ~~~~vlI~g~--~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      .++++||+|+  ++++|.+++..+...|++++++.
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~   42 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGT   42 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence            4689999998  89999999998888999998876

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.86  E-value=0.24  Score=42.66  Aligned_cols=109  Identities=13%  Similarity=0.123  Sum_probs=67.8

Q ss_pred             HHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC----CCc------HHHHHHHHhCCCcEEEec
Q 021311          111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR----AGS------DEAKEKLKGLGADEVFTE  180 (314)
Q Consensus       111 ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~----~~~------~~~~~~~~~lg~~~~~~~  180 (314)
                      ..+.++.....--++.+|+|.|+ |..|..+++++..+|++.+.+++.+    ..+      +.+..+++.....    .
T Consensus       178 al~~A~~i~g~~l~~~kVVv~GA-GaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~----~  252 (388)
T 1vl6_A          178 AFLNALKLTEKKIEEVKVVVNGI-GAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE----R  252 (388)
T ss_dssp             HHHHHHHHHTCCTTTCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT----C
T ss_pred             HHHHHHHHhCCCCCCcEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc----C
Confidence            33444443232236689999999 9999999999999999766677653    211      2234455543321    1


Q ss_pred             ChhhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCC
Q 021311          181 SQLEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       181 ~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ...   .+.+...   +.|+++-+++...+ +..++.|+++..++.+.++.
T Consensus       253 ~~~---~L~eav~---~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          253 LSG---DLETALE---GADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             CCS---CHHHHHT---TCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             chh---hHHHHHc---cCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCC
Confidence            111   2333333   38999999885443 78888899887666666443

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.86  E-value=0.023  Score=48.07  Aligned_cols=75  Identities=8%  Similarity=0.199  Sum_probs=48.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC-CcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG-ADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      .+|||+|++|.+|..+++.+...|.+++++.+......      ..+. ....+..+-.+.+.+.+..... ++|+||.+
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~d~vih~   74 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE------DAITEGAKFYNGDLRDKAFLRDVFTQE-NIEAVMHF   74 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG------GGSCTTSEEEECCTTCHHHHHHHHHHS-CEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch------hhcCCCcEEEECCCCCHHHHHHHHhhc-CCCEEEEC
Confidence            47999999999999999988888999998876432221      1121 1122322222233444443322 39999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      ++.
T Consensus        75 a~~   77 (330)
T 2c20_A           75 AAD   77 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            985

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=95.86  E-value=0.018  Score=44.22  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc--EEEecChhhHHHHHHHhc
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD--EVFTESQLEVKNVKGLLA  193 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~--~~~~~~~~~~~~i~~~~~  193 (314)
                      ..++++++||=.|+ | .|..+..+++. +.+++++--    +++..+.++    ..+..  .++....   ..+.....
T Consensus        18 ~~~~~~~~vLDiGc-G-~G~~~~~la~~-~~~v~~vD~----s~~~l~~a~~~~~~~~~~~v~~~~~~~---~~l~~~~~   87 (185)
T 3mti_A           18 EVLDDESIVVDATM-G-NGNDTAFLAGL-SKKVYAFDV----QEQALGKTSQRLSDLGIENTELILDGH---ENLDHYVR   87 (185)
T ss_dssp             TTCCTTCEEEESCC-T-TSHHHHHHHTT-SSEEEEEES----CHHHHHHHHHHHHHHTCCCEEEEESCG---GGGGGTCC
T ss_pred             HhCCCCCEEEEEcC-C-CCHHHHHHHHh-CCEEEEEEC----CHHHHHHHHHHHHHcCCCcEEEEeCcH---HHHHhhcc
Confidence            56789999999998 3 37788888877 777776663    566655553    23322  2222111   12222222


Q ss_pred             CCCCCcEEEecCCC----------------ccHHHHHHhcccCCEEEEEc
Q 021311          194 NLPEPALGFNCVGG----------------NSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       194 ~~g~~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~g  227 (314)
                      +  .||+|+-+.+.                ..+..+.+.|+|+|+++.+.
T Consensus        88 ~--~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           88 E--PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             S--CEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C--CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            2  59999866432                01267778999999998875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=95.86  E-value=0.042  Score=44.63  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=64.0

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhC-----CCcE--EEecChhhHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGL-----GADE--VFTESQLEVK  186 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~l-----g~~~--~~~~~~~~~~  186 (314)
                      +.....+.++++||-.|+ |. |..+..+++..+  .+++++- .   ++...+.+++.     |...  +...+-    
T Consensus        88 ~~~~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D-~---~~~~~~~a~~~~~~~~g~~~v~~~~~d~----  157 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGT-GS-GGLTLFLARAVGEKGLVESYE-A---RPHHLAQAERNVRAFWQVENVRFHLGKL----  157 (258)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEEE-S---CHHHHHHHHHHHHHHCCCCCEEEEESCG----
T ss_pred             HHHHcCCCCCCEEEEECC-Cc-CHHHHHHHHHhCCCCEEEEEe-C---CHHHHHHHHHHHHHhcCCCCEEEEECch----
Confidence            334467899999999998 53 888888898864  4555554 2   56666666432     4222  222211    


Q ss_pred             HHHHH-hcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          187 NVKGL-LANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       187 ~i~~~-~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                        .+. ... +.+|+|+......  .+..+.+.|+++|+++.+.
T Consensus       158 --~~~~~~~-~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          158 --EEAELEE-AAYDGVALDLMEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             --GGCCCCT-TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             --hhcCCCC-CCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence              111 111 2499999876653  3488899999999999875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.85  E-value=0.03  Score=45.48  Aligned_cols=100  Identities=16%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHh----CCCc--EEEecChhhHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKG----LGAD--EVFTESQLEVKN  187 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~----lg~~--~~~~~~~~~~~~  187 (314)
                      +.....++++++||-.|+ |. |..+..+++..+  .+++++ +.   +++..+.+++    .|..  ..+...+.    
T Consensus        85 i~~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~-D~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~----  154 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGV-GS-GALTLFLANIVGPEGRVVSY-EI---REDFAKLAWENIKWAGFDDRVTIKLKDI----  154 (255)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEE-CS---CHHHHHHHHHHHHHHTCTTTEEEECSCG----
T ss_pred             HHHhhCCCCCCEEEEecC-Cc-hHHHHHHHHHhCCCeEEEEE-ec---CHHHHHHHHHHHHHcCCCCceEEEECch----
Confidence            334578899999999998 43 888888888853  455444 43   5666665543    3432  11211111    


Q ss_pred             HHHHhcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                       .+..... .+|+|+......  .+..+.+.|+++|+++...
T Consensus       155 -~~~~~~~-~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          155 -YEGIEEE-NVDHVILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             -GGCCCCC-SEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             -hhccCCC-CcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             1112222 499999877664  4589999999999998764

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.85  E-value=0.01  Score=49.25  Aligned_cols=31  Identities=10%  Similarity=0.150  Sum_probs=28.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +|||+|++|.+|..+++.+...|.+|+++.+
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecc
Confidence            7999999999999999888888999888874

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.84  E-value=0.04  Score=43.91  Aligned_cols=102  Identities=13%  Similarity=0.129  Sum_probs=60.9

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNV  188 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i  188 (314)
                      ......++++||-.|+ | .|..++.+++..+  .+++++- .   ++...+.++    ..|..   .++..+.  .+.+
T Consensus        63 ~l~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~~  134 (229)
T 2avd_A           63 NLARLIQAKKALDLGT-F-TGYSALALALALPADGRVVTCE-V---DAQPPELGRPLWRQAEAEHKIDLRLKPA--LETL  134 (229)
T ss_dssp             HHHHHTTCCEEEEECC-T-TSHHHHHHHTTSCTTCEEEEEE-S---CSHHHHHHHHHHHHTTCTTTEEEEESCH--HHHH
T ss_pred             HHHHhcCCCEEEEEcC-C-ccHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHCCCCCeEEEEEcCH--HHHH
Confidence            3355678899999998 3 6888888888763  4555444 3   455544443    33431   2222221  1222


Q ss_pred             HHHhcCC--CCCcEEEecCCCc----cHHHHHHhcccCCEEEEEc
Q 021311          189 KGLLANL--PEPALGFNCVGGN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~--g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      ..+....  +.+|+|+-.....    .+..+.+.|+++|.++...
T Consensus       135 ~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          135 DELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             HHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            2332211  2599998765443    2478889999999998765

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.82  E-value=0.031  Score=47.50  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +++|||+|++|.+|..++..+...|.+|+++++.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~   42 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRD   42 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcC
Confidence            6899999999999999999888899999988764

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=95.80  E-value=0.023  Score=48.83  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=48.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC-----CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG-----IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g-----~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      +.+|||+|++|.+|..+++.+...|     .+++++.+......     ....+. ..+..+-.+.+.+.+...+.+.+|
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~d   74 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----HEDNPI-NYVQCDISDPDDSQAKLSPLTDVT   74 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----CCSSCC-EEEECCTTSHHHHHHHHTTCTTCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----cccCce-EEEEeecCCHHHHHHHHhcCCCCC
Confidence            3589999999999999998888888     88888886532211     111122 223222223344555444332399


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +||.|++.
T Consensus        75 ~vih~a~~   82 (364)
T 2v6g_A           75 HVFYVTWA   82 (364)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999885

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.78  E-value=0.033  Score=47.45  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=62.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...++.++.+|.++++..+.    ... +.+...|...    .  ..++   +..   ..|+|+.
T Consensus       164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~~~d~~----~~~-~~~~~~g~~~----~--~l~e---ll~---~aDvV~l  225 (335)
T 2g76_A          164 NGKTLGILGL-GRIGREVATRMQSFGMKTIGYDPI----ISP-EVSASFGVQQ----L--PLEE---IWP---LCDFITV  225 (335)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSS----SCH-HHHHHTTCEE----C--CHHH---HGG---GCSEEEE
T ss_pred             CcCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCC----cch-hhhhhcCcee----C--CHHH---HHh---cCCEEEE
Confidence            5789999999 999999999999999998776643    222 2455677642    1  1222   222   3899999


Q ss_pred             cCCCcc-----H-HHHHHhcccCCEEEEEcC
Q 021311          204 CVGGNS-----A-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       204 ~~g~~~-----~-~~~~~~l~~~G~~v~~g~  228 (314)
                      ++....     + ...+..|++++.+|.++.
T Consensus       226 ~~P~t~~t~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          226 HTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCCCCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred             ecCCCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            887632     2 567889999999998873

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=95.78  E-value=0.023  Score=48.33  Aligned_cols=34  Identities=21%  Similarity=0.084  Sum_probs=29.1

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++||+|+++  ++|.++++.+...|++++.+.+
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~   36 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIW   36 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence            368899999964  8999999888889999997773

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.77  E-value=0.041  Score=47.67  Aligned_cols=75  Identities=15%  Similarity=0.054  Sum_probs=49.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      ..+|||+|++|.+|..+++.+...|.+++++.+.......    ....+. ..+..+-.+.+.+.+...   ++|+||.+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~v-~~~~~Dl~d~~~~~~~~~---~~d~Vih~  100 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT----EDMFCD-EFHLVDLRVMENCLKVTE---GVDHVFNL  100 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC----GGGTCS-EEEECCTTSHHHHHHHHT---TCSEEEEC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh----hccCCc-eEEECCCCCHHHHHHHhC---CCCEEEEC
Confidence            4789999999999999998888889999998865322110    111122 233233223344555443   39999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      ++.
T Consensus       101 A~~  103 (379)
T 2c5a_A          101 AAD  103 (379)
T ss_dssp             CCC
T ss_pred             cee
Confidence            984

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.77  E-value=0.015  Score=49.28  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHH----hCCCcE--EEecChhhHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLK----GLGADE--VFTESQLEVKN  187 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~----~lg~~~--~~~~~~~~~~~  187 (314)
                      +.....++++++||-.|+ |. |..+..+++..+  .+++++..    +++..+.++    ..|...  +...+-.   +
T Consensus        67 l~~~l~~~~~~~VLDiGc-G~-G~~~~~la~~~~~~~~v~gvD~----s~~~~~~a~~~~~~~g~~~v~~~~~d~~---~  137 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGG-GT-GYNAAVMSRVVGEKGLVVSVEY----SRKICEIAKRNVERLGIENVIFVCGDGY---Y  137 (317)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEES----CHHHHHHHHHHHHHTTCCSEEEEESCGG---G
T ss_pred             HHHhcCCCCcCEEEEecC-Cc-hHHHHHHHHhcCCCCEEEEEEC----CHHHHHHHHHHHHHcCCCCeEEEECChh---h
Confidence            334467899999999998 44 888888888754  23665552    566655554    334332  2211111   1


Q ss_pred             HHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      .  .... +.+|+|+........ ..+.+.|+|+|+++..-
T Consensus       138 ~--~~~~-~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          138 G--VPEF-SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             C--CGGG-CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             c--cccC-CCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            0  0111 259999988766554 67889999999998764

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=95.76  E-value=0.055  Score=51.82  Aligned_cols=86  Identities=15%  Similarity=0.245  Sum_probs=53.4

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHH-HcCCc-EEEEecCCC---CcHHHHHHHHhCCCcEEE-ecC--h-hhHHHHHHHh
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIAR-HRGIH-SINIIRDRA---GSDEAKEKLKGLGADEVF-TES--Q-LEVKNVKGLL  192 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~-~~g~~-vi~~~~~~~---~~~~~~~~~~~lg~~~~~-~~~--~-~~~~~i~~~~  192 (314)
                      +.+++++||+|++|++|.++++.+. ..|++ ++.+.+...   ..++..+.++..|....+ ..+  + ..++++.+..
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            3678999999999999999998776 78996 555554311   123334455666765433 222  2 2233332222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      .....+|.+++++|.
T Consensus       607 ~~~~~id~lVnnAGv  621 (795)
T 3slk_A          607 PDEHPLTAVVHAAGV  621 (795)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HHhCCCEEEEECCCc
Confidence            222259999999985

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.76  E-value=0.085  Score=45.51  Aligned_cols=92  Identities=14%  Similarity=0.082  Sum_probs=62.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      -+|+|+|+ |.+|..+++.+.. ..++.++..    +.++.+.++.......+|..  +.+.+.+...+   .|+|++|+
T Consensus        17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~----~~~~~~~~~~~~~~~~~d~~--d~~~l~~~~~~---~DvVi~~~   85 (365)
T 3abi_A           17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIGDV----NNENLEKVKEFATPLKVDAS--NFDKLVEVMKE---FELVIGAL   85 (365)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TSEEEEEES----CHHHHHHHTTTSEEEECCTT--CHHHHHHHHTT---CSEEEECC
T ss_pred             cEEEEECC-CHHHHHHHHHHhc-CCCeEEEEc----CHHHHHHHhccCCcEEEecC--CHHHHHHHHhC---CCEEEEec
Confidence            47999999 9999998877754 345554442    66777777655433334433  33456666554   99999999


Q ss_pred             CCccH-HHHHHhcccCCEEEEEcC
Q 021311          206 GGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       206 g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      +...- ..+..|+..+-.++.+..
T Consensus        86 p~~~~~~v~~~~~~~g~~yvD~s~  109 (365)
T 3abi_A           86 PGFLGFKSIKAAIKSKVDMVDVSF  109 (365)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCC
T ss_pred             CCcccchHHHHHHhcCcceEeeec
Confidence            87543 556678888889998763

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=95.75  E-value=0.098  Score=40.36  Aligned_cols=97  Identities=13%  Similarity=0.084  Sum_probs=56.7

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC---------cEEEEecCCCCcHHHHHHHHhCCCcEEE-ecC--hh-hHH
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGI---------HSINIIRDRAGSDEAKEKLKGLGADEVF-TES--QL-EVK  186 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~---------~vi~~~~~~~~~~~~~~~~~~lg~~~~~-~~~--~~-~~~  186 (314)
                      ..++++++||-.|+ |. |..+..+++..+.         ..+..++.   ++..     .+.....+ ..+  +. ..+
T Consensus        18 ~~~~~~~~vLDlGc-G~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~---s~~~-----~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           18 QILRPGLRVLDCGA-AP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDL---LHIF-----PLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCCCTTCEEEEETC-CS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECS---SCCC-----CCTTCEEECSCCTTSHHHHH
T ss_pred             CCCCCCCEEEEeCC-CC-CHHHHHHHHHhccccccccCCCceEEEEec---hhcc-----cCCCCeEEEeccCCCHHHHH
Confidence            34789999999998 55 8899999998874         33444443   2210     11112233 222  11 112


Q ss_pred             HHHHHhcCCCCCcEEEec-----CCCc-------------cHHHHHHhcccCCEEEEEc
Q 021311          187 NVKGLLANLPEPALGFNC-----VGGN-------------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~-----~g~~-------------~~~~~~~~l~~~G~~v~~g  227 (314)
                      .+.....+. .+|+|+..     .+..             .+..+.+.|+|+|+++...
T Consensus        88 ~~~~~~~~~-~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           88 RILEVLPGR-RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHHSGGG-CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhcCCC-CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            333333333 49999953     3321             2356788999999998764

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=95.74  E-value=0.079  Score=45.70  Aligned_cols=86  Identities=15%  Similarity=0.083  Sum_probs=55.3

Q ss_pred             CCCCEEEEcCCCcHHHHHHH-HHHHHcCCcEEEEecCCCCcHH------------HHHHHHhCCCcEE-EecCh---hhH
Q 021311          123 NSGDSIVQNGATSIVGQCII-QIARHRGIHSINIIRDRAGSDE------------AKEKLKGLGADEV-FTESQ---LEV  185 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~-~la~~~g~~vi~~~~~~~~~~~------------~~~~~~~lg~~~~-~~~~~---~~~  185 (314)
                      ..++++||+|+++++|+++. .+|...|+.++++...+...+.            -.+.+++.|.... ++.+-   +..
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence            45799999999999999864 5555779999988865443321            1234555665543 44332   222


Q ss_pred             HH-HHHHhcCCCCCcEEEecCCCc
Q 021311          186 KN-VKGLLANLPEPALGFNCVGGN  208 (314)
Q Consensus       186 ~~-i~~~~~~~g~~d~v~d~~g~~  208 (314)
                      ++ +.+.-...|++|+++.+.+..
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccc
Confidence            22 333333445799999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.71  E-value=0.16  Score=40.21  Aligned_cols=92  Identities=9%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|+|+|+ |.+|..+++.+...|.+++++.+    ++++.+.+. ..+.. ++..+....+.+++..-.  ++|+++-++
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~----~~~~~~~l~~~~~~~-~i~gd~~~~~~l~~a~i~--~ad~vi~~~   73 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINK----DRELCEEFAKKLKAT-IIHGDGSHKEILRDAEVS--KNDVVVILT   73 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEES----CHHHHHHHHHHSSSE-EEESCTTSHHHHHHHTCC--TTCEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEEC----CHHHHHHHHHHcCCe-EEEcCCCCHHHHHhcCcc--cCCEEEEec
Confidence            5899998 99999999999999999888774    666666653 45654 343443333344443222  499999999


Q ss_pred             CCccHH----HHHHhcccCCEEEEE
Q 021311          206 GGNSAS----KVLKFLSQGGTMVTY  226 (314)
Q Consensus       206 g~~~~~----~~~~~l~~~G~~v~~  226 (314)
                      +.+..+    ...+.+.+..+++..
T Consensus        74 ~~d~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           74 PRDEVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             SCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             CCcHHHHHHHHHHHHHcCCCeEEEE
Confidence            986553    222333445566544

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.70  E-value=0.022  Score=47.44  Aligned_cols=85  Identities=19%  Similarity=0.140  Sum_probs=53.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||+|++|.+|..+++.+. .|.+++++.+..    .      ..    ..|..+  .+.+.+...+. ++|+||.+++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~----~------~~----~~D~~d--~~~~~~~~~~~-~~d~vih~a~   63 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHS----K------EF----CGDFSN--PKGVAETVRKL-RPDVIVNAAA   63 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC----S------SS----CCCTTC--HHHHHHHHHHH-CCSEEEECCC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEecccc----c------cc----cccCCC--HHHHHHHHHhc-CCCEEEECcc
Confidence            69999999999999998887 799998887531    0      01    112222  22333333322 3999999998


Q ss_pred             Ccc------------------HHHHHHhccc-CCEEEEEcCC
Q 021311          207 GNS------------------ASKVLKFLSQ-GGTMVTYGGM  229 (314)
Q Consensus       207 ~~~------------------~~~~~~~l~~-~G~~v~~g~~  229 (314)
                      ...                  ...+++.++. +.++|.+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  105 (299)
T 1n2s_A           64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTD  105 (299)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEG
T ss_pred             cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            532                  1234444443 4588888753

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=95.65  E-value=0.021  Score=47.40  Aligned_cols=98  Identities=10%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCc---EEEecChhhHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGAD---EVFTESQLEVKN  187 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~---~~~~~~~~~~~~  187 (314)
                      .+.+..++.++.+||-+|+ | .|..+..+++..|++++++.-    +++..+.+++    .+..   .+...+-     
T Consensus        55 ~~~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvd~----s~~~~~~a~~~~~~~~~~~~~~~~~~d~-----  123 (287)
T 1kpg_A           55 LALGKLGLQPGMTLLDVGC-G-WGATMMRAVEKYDVNVVGLTL----SKNQANHVQQLVANSENLRSKRVLLAGW-----  123 (287)
T ss_dssp             HHHTTTTCCTTCEEEEETC-T-TSHHHHHHHHHHCCEEEEEES----CHHHHHHHHHHHHTCCCCSCEEEEESCG-----
T ss_pred             HHHHHcCCCCcCEEEEECC-c-ccHHHHHHHHHcCCEEEEEEC----CHHHHHHHHHHHHhcCCCCCeEEEECCh-----
Confidence            3445567889999999998 3 377888888777887776663    5666655543    3321   1221111     


Q ss_pred             HHHHhcCCCCCcEEEecCC-----Cc----cHHHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVG-----GN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g-----~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                       ..+.   +.+|+|+....     .+    .+..+.+.|+|+|+++...
T Consensus       124 -~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          124 -EQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             -GGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -hhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence             1111   25999987532     11    2367788999999998765

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.63  E-value=0.027  Score=48.27  Aligned_cols=88  Identities=20%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...++.++.+|++++...+.    ....+.+.++|...+   .  .   +.++..   ..|+|+.
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~~V~~~dr~----~~~~~~~~~~g~~~~---~--~---l~ell~---~aDvV~l  226 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGCNLLYHDRL----QMAPELEKETGAKFV---E--D---LNEMLP---KCDVIVI  226 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCEEEEECSS----CCCHHHHHHHCCEEC---S--C---HHHHGG---GCSEEEE
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCCEEEEeCCC----ccCHHHHHhCCCeEc---C--C---HHHHHh---cCCEEEE
Confidence            5789999999 999999999999999998776642    222334444564321   1  1   222222   2888888


Q ss_pred             cCCCc-----cH-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGN-----SA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~-----~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++...     .+ ...+..|+++..+|.++
T Consensus       227 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  256 (351)
T 3jtm_A          227 NMPLTEKTRGMFNKELIGKLKKGVLIVNNA  256 (351)
T ss_dssp             CSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred             CCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence            87642     12 57778888888888776

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.63  E-value=0.027  Score=46.64  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=57.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +.+|||+|+ |.+|..++..+...|.+++++.+.....        .-+...+ .|..+  .+.+.+...+  ++|+||.
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~Dl~d--~~~~~~~~~~--~~d~vih   69 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPM--------PAGVQTLIADVTR--PDTLASIVHL--RPEILVY   69 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCC--------CTTCCEEECCTTC--GGGCTTGGGG--CCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcccc--------ccCCceEEccCCC--hHHHHHhhcC--CCCEEEE
Confidence            468999995 9999999999988999999998753211        1222222 12222  2233333333  4999999


Q ss_pred             cCCCc-------------cHHHHHHhcccC--CEEEEEcC
Q 021311          204 CVGGN-------------SASKVLKFLSQG--GTMVTYGG  228 (314)
Q Consensus       204 ~~g~~-------------~~~~~~~~l~~~--G~~v~~g~  228 (314)
                      +++..             ....+++.++..  +++|.+++
T Consensus        70 ~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           70 CVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             CHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence            98642             124556666543  58888875

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.61  E-value=0.046  Score=46.11  Aligned_cols=87  Identities=16%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      -.|++|.|+|. |.+|...++.++.+|+++++..+.    .++. .+...|....      ..+++   ..   ..|+|+
T Consensus       140 l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~----~~~~-~~~~~g~~~~------~l~el---l~---~aDvVv  201 (313)
T 2ekl_A          140 LAGKTIGIVGF-GRIGTKVGIIANAMGMKVLAYDIL----DIRE-KAEKINAKAV------SLEEL---LK---NSDVIS  201 (313)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSS----CCHH-HHHHTTCEEC------CHHHH---HH---HCSEEE
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCC----cchh-HHHhcCceec------CHHHH---Hh---hCCEEE
Confidence            35789999999 999999999999999998877643    2222 3556776421      12222   11   289999


Q ss_pred             ecCCCcc-----H-HHHHHhcccCCEEEEEc
Q 021311          203 NCVGGNS-----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~~-----~-~~~~~~l~~~G~~v~~g  227 (314)
                      .++....     + ...+..|++++.+|.++
T Consensus       202 l~~P~~~~t~~li~~~~l~~mk~ga~lIn~a  232 (313)
T 2ekl_A          202 LHVTVSKDAKPIIDYPQFELMKDNVIIVNTS  232 (313)
T ss_dssp             ECCCCCTTSCCSBCHHHHHHSCTTEEEEESS
T ss_pred             EeccCChHHHHhhCHHHHhcCCCCCEEEECC
Confidence            9987532     2 56778999999988887

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.60  E-value=0.086  Score=43.64  Aligned_cols=88  Identities=10%  Similarity=-0.027  Sum_probs=53.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHH-HHHHhCCC---cEEEecChhhHHHHHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAK-EKLKGLGA---DEVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~-~~~~~lg~---~~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      .+++++|+|+ |++|.+++..+...|+ ++.++.+    +.++. +.++.++.   ..+....+     +   .  . .+
T Consensus       125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R----~~~~a~~la~~~~~~~~~~~~~~~~-----l---~--~-~a  188 (281)
T 3o8q_A          125 KGATILLIGA-GGAARGVLKPLLDQQPASITVTNR----TFAKAEQLAELVAAYGEVKAQAFEQ-----L---K--Q-SY  188 (281)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEES----SHHHHHHHHHHHGGGSCEEEEEGGG-----C---C--S-CE
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEEC----CHHHHHHHHHHhhccCCeeEeeHHH-----h---c--C-CC
Confidence            6899999999 8999999988888997 5555553    44443 33344432   22232221     1   1  2 49


Q ss_pred             cEEEecCCCccHHH----HHHhcccCCEEEEEc
Q 021311          199 ALGFNCVGGNSASK----VLKFLSQGGTMVTYG  227 (314)
Q Consensus       199 d~v~d~~g~~~~~~----~~~~l~~~G~~v~~g  227 (314)
                      |+|++|++......    -.+.++++..++.+.
T Consensus       189 DiIInaTp~gm~~~~~~l~~~~l~~~~~V~Dlv  221 (281)
T 3o8q_A          189 DVIINSTSASLDGELPAIDPVIFSSRSVCYDMM  221 (281)
T ss_dssp             EEEEECSCCCC----CSCCGGGEEEEEEEEESC
T ss_pred             CEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEec
Confidence            99999998654311    123456665566655

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.59  E-value=0.044  Score=45.87  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=47.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +.+|||+|++|.+|..+++.+...  |.+++++.+.....    +...  +.. .+..+-.+.+.+.+.....+ +|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~----~~~~--~~~-~~~~D~~d~~~~~~~~~~~~-~d~vi   73 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT----DVVN--SGP-FEVVNALDFNQIEHLVEVHK-ITDIY   73 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC----HHHH--SSC-EEECCTTCHHHHHHHHHHTT-CCEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc----cccC--CCc-eEEecCCCHHHHHHHHhhcC-CCEEE
Confidence            367999999999999999887777  78999888653321    1112  222 22222222334444443223 99999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .+++.
T Consensus        74 h~a~~   78 (312)
T 2yy7_A           74 LMAAL   78 (312)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99985

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.59  E-value=0.036  Score=47.79  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|++|.|+|. |.+|...++.++.+|++ +++..+.    ....+.+.++|...+   .  ..+++   ..   ..|+|+
T Consensus       163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~~~d~~----~~~~~~~~~~g~~~~---~--~l~el---l~---~aDvV~  226 (364)
T 2j6i_A          163 EGKTIATIGA-GRIGYRVLERLVPFNPKELLYYDYQ----ALPKDAEEKVGARRV---E--NIEEL---VA---QADIVT  226 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCSEEEEECSS----CCCHHHHHHTTEEEC---S--SHHHH---HH---TCSEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCcEEEEECCC----ccchhHHHhcCcEec---C--CHHHH---Hh---cCCEEE
Confidence            6789999999 99999999999999997 7766532    222234455664321   1  12222   22   388998


Q ss_pred             ecCCCc-----cH-HHHHHhcccCCEEEEEc
Q 021311          203 NCVGGN-----SA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~-----~~-~~~~~~l~~~G~~v~~g  227 (314)
                      .++...     .+ ...+..|++++.+|.++
T Consensus       227 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~a  257 (364)
T 2j6i_A          227 VNAPLHAGTKGLINKELLSKFKKGAWLVNTA  257 (364)
T ss_dssp             ECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             ECCCCChHHHHHhCHHHHhhCCCCCEEEECC
Confidence            888763     22 46778888888888876

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.59  E-value=0.032  Score=47.02  Aligned_cols=94  Identities=11%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHH-H-HcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIA-R-HRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la-~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      -+|.|+|+ |.+|...+..+ + ..+.+++.+++.+..+ ...+.++.+|....  +  ...+++.+.+... .+|+||+
T Consensus         5 irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~-~~~~~a~~~g~~~~--~--~~~e~ll~~~~~~-~iDvV~~   77 (312)
T 1nvm_B            5 LKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAAS-DGLARAQRMGVTTT--Y--AGVEGLIKLPEFA-DIDFVFD   77 (312)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTC-HHHHHHHHTTCCEE--S--SHHHHHHHSGGGG-GEEEEEE
T ss_pred             CEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhh-hHHHHHHHcCCCcc--c--CCHHHHHhccCCC-CCcEEEE
Confidence            47899997 99999888777 4 3467787788653211 13455667776421  1  1233443332223 3999999


Q ss_pred             cCCCccH-HHHHHhccc--CCEEEEE
Q 021311          204 CVGGNSA-SKVLKFLSQ--GGTMVTY  226 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~--~G~~v~~  226 (314)
                      |++...- +.+..+++.  |.+++..
T Consensus        78 atp~~~h~~~a~~al~a~~Gk~Vi~e  103 (312)
T 1nvm_B           78 ATSASAHVQNEALLRQAKPGIRLIDL  103 (312)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             CCChHHHHHHHHHHHHhCCCCEEEEc
Confidence            9996543 677788887  8777763

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.58  E-value=0.073  Score=44.74  Aligned_cols=98  Identities=16%  Similarity=0.071  Sum_probs=53.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHh----CCCc-EEEecChhhHHHHHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKG----LGAD-EVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~----lg~~-~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      .++++||+|+ |+.|.+++..+...|++.+.++..+....++.+. +++    .+.. ...+..+.  +.+.+...   .
T Consensus       147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l--~~~~~~l~---~  220 (312)
T 3t4e_A          147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQ--HAFTEALA---S  220 (312)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCH--HHHHHHHH---H
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhh--hhhHhhcc---C
Confidence            5789999999 9999999998899999544444321111333322 222    2322 22333321  11111122   2


Q ss_pred             CcEEEecCCCccH---HH----HHHhcccCCEEEEEc
Q 021311          198 PALGFNCVGGNSA---SK----VLKFLSQGGTMVTYG  227 (314)
Q Consensus       198 ~d~v~d~~g~~~~---~~----~~~~l~~~G~~v~~g  227 (314)
                      +|+|++|++....   ..    -...++++..++.+.
T Consensus       221 ~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  257 (312)
T 3t4e_A          221 ADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV  257 (312)
T ss_dssp             CSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred             ceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence            9999999875331   10    123455555555554

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=95.58  E-value=0.086  Score=41.95  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-------cEEEEecCCCCcHHHHHHHHh----CC-------CcEEEecCh
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGI-------HSINIIRDRAGSDEAKEKLKG----LG-------ADEVFTESQ  182 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-------~vi~~~~~~~~~~~~~~~~~~----lg-------~~~~~~~~~  182 (314)
                      .++++.+||-+|+ |. |..+..+++..+.       +++++- .   +++..+.+++    .+       ...++..+.
T Consensus        81 ~~~~~~~VLdiG~-G~-G~~~~~la~~~~~~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  154 (227)
T 1r18_A           81 HLKPGARILDVGS-GS-GYLTACFYRYIKAKGVDADTRIVGIE-H---QAELVRRSKANLNTDDRSMLDSGQLLIVEGDG  154 (227)
T ss_dssp             TCCTTCEEEEESC-TT-SHHHHHHHHHHHHSCCCTTCEEEEEE-S---CHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred             hCCCCCEEEEECC-Cc-cHHHHHHHHhcccccCCccCEEEEEE-c---CHHHHHHHHHHHHhcCccccCCCceEEEECCc
Confidence            5789999999998 44 8888888887663       555554 2   5555555432    11       112222221


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ..     ..... +.||+|+.+...... ..+.+.|+++|+++..-
T Consensus       155 ~~-----~~~~~-~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          155 RK-----GYPPN-APYNAIHVGAAAPDTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             GG-----CCGGG-CSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cc-----CCCcC-CCccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence            11     01111 249999987776544 78889999999998765

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.57  E-value=0.12  Score=42.45  Aligned_cols=92  Identities=13%  Similarity=0.026  Sum_probs=55.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++++++|+|+ |++|.++++.+...|++++++.+    +.++. +.++.++....++..+  .+.+.+     +++|+++
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R----~~~~~~~la~~~~~~~~~~~~~--~~~~~~-----~~~DivV  185 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNR----TVSRAEELAKLFAHTGSIQALS--MDELEG-----HEFDLII  185 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----SHHHHHHHHHHTGGGSSEEECC--SGGGTT-----CCCSEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEEC----CHHHHHHHHHHhhccCCeeEec--HHHhcc-----CCCCEEE
Confidence            6789999999 89999999999999977666653    44443 3444554310011111  111211     2599999


Q ss_pred             ecCCCccHHH----HHHhcccCCEEEEEc
Q 021311          203 NCVGGNSASK----VLKFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~~~~~----~~~~l~~~G~~v~~g  227 (314)
                      +|++......    -...++++..++.+.
T Consensus       186 n~t~~~~~~~~~~i~~~~l~~~~~v~D~~  214 (271)
T 1nyt_A          186 NATSSGISGDIPAIPSSLIHPGIYCYDMF  214 (271)
T ss_dssp             ECCSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             ECCCCCCCCCCCCCCHHHcCCCCEEEEec
Confidence            9999754311    112345555666655

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=95.54  E-value=0.043  Score=46.59  Aligned_cols=78  Identities=6%  Similarity=-0.025  Sum_probs=46.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc---C---CcEEEEecCCC-CcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          127 SIVQNGATSIVGQCIIQIARHR---G---IHSINIIRDRA-GSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~---g---~~vi~~~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      +|||+|++|.+|..+++.+...   |   .+++++.+... ...++...+........+..+-.+.+.+.+...   ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d   78 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR---GVD   78 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT---TCC
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc---CCC
Confidence            6999999999999999877775   7   78888876421 111111111111111223233223344555552   499


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +||.+++.
T Consensus        79 ~Vih~A~~   86 (337)
T 1r6d_A           79 AIVHFAAE   86 (337)
T ss_dssp             EEEECCSC
T ss_pred             EEEECCCc
Confidence            99999985

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.54  E-value=0.15  Score=42.22  Aligned_cols=95  Identities=14%  Similarity=0.100  Sum_probs=53.1

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCC----cEEEecChhhHHHHHHHhcCCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGA----DEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~----~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      -.+++++|+|+ |++|.+++..+...|++.+.++..   +.++.+ .++.++.    ..+.....+.   +.+...   .
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R---~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~l~---~  194 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADL---DTSRAQALADVINNAVGREAVVGVDARG---IEDVIA---A  194 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS---SHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHHHH---H
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEEC---CHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHHHh---c
Confidence            46799999999 899999998888899964444432   444433 3333321    1111111111   222222   2


Q ss_pred             CcEEEecCCCccH-----HHHHHhcccCCEEEEEc
Q 021311          198 PALGFNCVGGNSA-----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       198 ~d~v~d~~g~~~~-----~~~~~~l~~~G~~v~~g  227 (314)
                      +|+|++|++....     ..-...++++..++.+.
T Consensus       195 ~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv  229 (283)
T 3jyo_A          195 ADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVV  229 (283)
T ss_dssp             SSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence            9999999974221     11134556666555554

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.50  E-value=0.05  Score=47.73  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=55.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC---cEEEEecCCCCcHHHHHHH-HhCCC-----cEEEecChhhHHHHHHHhcCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI---HSINIIRDRAGSDEAKEKL-KGLGA-----DEVFTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~---~vi~~~~~~~~~~~~~~~~-~~lg~-----~~~~~~~~~~~~~i~~~~~~~g  196 (314)
                      .+|+|+|+ |.+|..+++.+...|.   +++++.+    +.++.+.+ ..++.     ...+..+-.+.+.+.+...+. 
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r----~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-   75 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASR----TLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-   75 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEES----CHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEEC----CHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-
Confidence            47999999 8999999988887773   5555543    44443332 33321     122222211223333333322 


Q ss_pred             CCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          197 EPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       197 ~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++|+|++|++...- .....++..+-.++.+.
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             CCCEEEECCCcccChHHHHHHHHhCCCEEEec
Confidence            39999999986433 44456677777777653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.49  E-value=0.054  Score=42.98  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNV  188 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i  188 (314)
                      .+....++.+||-+|+  +.|..+..+++..  +.+++++- .   +++..+.++    ..|..   .++..+..  +.+
T Consensus        52 ~l~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD-~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~  123 (223)
T 3duw_A           52 LLVQIQGARNILEIGT--LGGYSTIWLARGLSSGGRVVTLE-A---SEKHADIARSNIERANLNDRVEVRTGLAL--DSL  123 (223)
T ss_dssp             HHHHHHTCSEEEEECC--TTSHHHHHHHTTCCSSCEEEEEE-S---CHHHHHHHHHHHHHTTCTTTEEEEESCHH--HHH
T ss_pred             HHHHhhCCCEEEEecC--CccHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHH
Confidence            3345668899999998  3578888888876  45665555 2   555555443    34532   22222221  122


Q ss_pred             HHHhcCC-CCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          189 KGLLANL-PEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~-g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      ..+.... +.||+||-......    +..+.+.|+|+|.++.-.
T Consensus       124 ~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          124 QQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             HHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             HHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            2222211 25999996554432    367789999999888654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=95.48  E-value=0.083  Score=42.83  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=58.8

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHH----HhCCCc---EEEecChhhHHHHHH
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKL----KGLGAD---EVFTESQLEVKNVKG  190 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~----~~lg~~---~~~~~~~~~~~~i~~  190 (314)
                      ....++++||-+|+  +.|..++.+++.+  +.+++++- .   +++..+.+    +..|..   .++..+..  +.+..
T Consensus        75 ~~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD-~---s~~~~~~a~~~~~~~g~~~~i~~~~gda~--~~l~~  146 (247)
T 1sui_A           75 LKLINAKNTMEIGV--YTGYSLLATALAIPEDGKILAMD-I---NKENYELGLPVIKKAGVDHKIDFREGPAL--PVLDE  146 (247)
T ss_dssp             HHHTTCCEEEEECC--GGGHHHHHHHHHSCTTCEEEEEE-S---CCHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHH
T ss_pred             HHhhCcCEEEEeCC--CcCHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCCCeEEEECCHH--HHHHH
Confidence            44567789999997  4577888888876  45655555 3   44444444    344542   12222211  11222


Q ss_pred             HhcC---CCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          191 LLAN---LPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~---~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      +...   .+.||+||-......    +..+.+.|++||.++.-.
T Consensus       147 l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          147 MIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence            2110   125999986554332    367889999999998654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.45  E-value=0.03  Score=44.95  Aligned_cols=100  Identities=19%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHh----CCCc---EEEecChhhHHHHHH
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKG----LGAD---EVFTESQLEVKNVKG  190 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~----lg~~---~~~~~~~~~~~~i~~  190 (314)
                      ....++++||-+|+ | .|..++.+++..+  .+++++- .   +++..+.+++    .|..   .++..+.  .+.+..
T Consensus        68 ~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~~v~~iD-~---~~~~~~~a~~~~~~~g~~~~i~~~~~d~--~~~l~~  139 (232)
T 3cbg_A           68 ISLTGAKQVLEIGV-F-RGYSALAMALQLPPDGQIIACD-Q---DPNATAIAKKYWQKAGVAEKISLRLGPA--LATLEQ  139 (232)
T ss_dssp             HHHHTCCEEEEECC-T-TSHHHHHHHTTSCTTCEEEEEE-S---CHHHHHHHHHHHHHHTCGGGEEEEESCH--HHHHHH
T ss_pred             HHhcCCCEEEEecC-C-CCHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCCcEEEEEcCH--HHHHHH
Confidence            44567789999998 3 6888888998764  4555544 3   5666555542    3432   1222221  122333


Q ss_pred             HhcCC--CCCcEEEecCCCc----cHHHHHHhcccCCEEEEEc
Q 021311          191 LLANL--PEPALGFNCVGGN----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~--g~~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      +....  +.||+||-.....    .+..+.+.|+++|.++.-.
T Consensus       140 l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          140 LTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             HHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             HHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            32211  2599999554432    2478889999999998754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.45  E-value=0.038  Score=44.98  Aligned_cols=34  Identities=12%  Similarity=0.163  Sum_probs=29.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      +.+|+|.|+ |++|..++..+...|...+.+++.+
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            489999999 8899999999999999888888654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.45  E-value=0.081  Score=44.88  Aligned_cols=35  Identities=14%  Similarity=0.298  Sum_probs=31.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.+++.+
T Consensus        33 ~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCC
Confidence            4689999999 9999999999999999999888654

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.42  E-value=0.024  Score=49.00  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=30.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      ++|||+|++|.+|..+++.+...|.+|+++.+..
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   58 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   58 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCc
Confidence            5899999999999999988888899999988653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.42  E-value=0.16  Score=42.85  Aligned_cols=89  Identities=18%  Similarity=0.131  Sum_probs=59.8

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .+|.|+|. |.+|.+.++.++..|.  +++++.+    ++++.+.+.+.|.. .......+.      ...   ..|+||
T Consensus        34 ~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr----~~~~~~~a~~~G~~~~~~~~~~~~------~~~---~aDvVi   99 (314)
T 3ggo_A           34 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDI----NPESISKAVDLGIIDEGTTSIAKV------EDF---SPDFVM   99 (314)
T ss_dssp             SEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECS----CHHHHHHHHHTTSCSEEESCTTGG------GGG---CCSEEE
T ss_pred             CEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEEC----CHHHHHHHHHCCCcchhcCCHHHH------hhc---cCCEEE
Confidence            68999998 9999999999999998  6665542    67777788888763 222111110      111   389999


Q ss_pred             ecCCCccH----HHHHHhcccCCEEEEEcC
Q 021311          203 NCVGGNSA----SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       203 d~~g~~~~----~~~~~~l~~~G~~v~~g~  228 (314)
                      .|+.....    ......++++..++.+++
T Consensus       100 lavp~~~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          100 LSSPVRTFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             ECSCGGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             EeCCHHHHHHHHHHHhhccCCCcEEEECCC
Confidence            99887654    344455677777776653

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.41  E-value=0.031  Score=47.59  Aligned_cols=76  Identities=17%  Similarity=0.154  Sum_probs=46.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcC-------CcEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRG-------IHSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g-------~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~  195 (314)
                      .+.+|||+|++|.+|..+++.+...|       .+++++.+.......      ..+.. ..+..+-.+.+.+.+...+ 
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~-   85 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------GFSGAVDARAADLSAPGEAEKLVEA-   85 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------TCCSEEEEEECCTTSTTHHHHHHHT-
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------ccCCceeEEEcCCCCHHHHHHHHhc-
Confidence            45689999999999999998888888       788887764321111      01111 1222221122234333322 


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                       ++|+||.+++.
T Consensus        86 -~~d~vih~A~~   96 (342)
T 2hrz_A           86 -RPDVIFHLAAI   96 (342)
T ss_dssp             -CCSEEEECCCC
T ss_pred             -CCCEEEECCcc
Confidence             49999999985

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=95.37  E-value=0.7  Score=39.24  Aligned_cols=89  Identities=12%  Similarity=0.085  Sum_probs=58.8

Q ss_pred             CEEEEcCCCcHHHHHHHHHHH-H-cCCcEEEEecCCCCcHHHHH-HHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIAR-H-RGIHSINIIRDRAGSDEAKE-KLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~-~-~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      -+|.|+|+ |.+|...++.++ . .+++++++++.   ++++.+ .++.+|...+++.       +.++.... .+|+|+
T Consensus         9 ~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~---~~~~~~~~a~~~g~~~~~~~-------~~~~l~~~-~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGL-GRLGERHARHLVNKIQGVKLVAACAL---DSNQLEWAKNELGVETTYTN-------YKDMIDTE-NIDAIF   76 (346)
T ss_dssp             EEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECS---CHHHHHHHHHTTCCSEEESC-------HHHHHTTS-CCSEEE
T ss_pred             ceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecC---CHHHHHHHHHHhCCCcccCC-------HHHHhcCC-CCCEEE
Confidence            47899999 999998887776 4 46777777765   555544 4466776544321       22333332 399999


Q ss_pred             ecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          203 NCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      .|+....- +.+..+++.| +.|++.
T Consensus        77 i~tp~~~h~~~~~~al~~G-~~v~~e  101 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAG-LNVFCE  101 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTT-CEEEEC
T ss_pred             EeCChHhHHHHHHHHHHCC-CEEEEc
Confidence            99987654 6777778775 445553

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.37  E-value=0.03  Score=47.62  Aligned_cols=32  Identities=6%  Similarity=0.109  Sum_probs=28.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRD  158 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~  158 (314)
                      +|||+|++|.+|..+++.+... |.+++++.+.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   34 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            6999999999999999888887 8999988864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.37  E-value=0.081  Score=43.65  Aligned_cols=89  Identities=11%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      .+|||+|+ |.+|..++..+...|.+|+++++.    ..+.+.+...+...+. .+-.+.+        ..++|+||.++
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~----~~~~~~~~~~~~~~~~-~D~~d~~--------~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRN----PDQMEAIRASGAEPLL-WPGEEPS--------LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESC----GGGHHHHHHTTEEEEE-SSSSCCC--------CTTCCEEEECC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcC----hhhhhhHhhCCCeEEE-ecccccc--------cCCCCEEEECC
Confidence            68999998 999999999998889999999863    4444444444443322 2211111        12499999999


Q ss_pred             CCcc-----HHHHHHhccc----CCEEEEEcC
Q 021311          206 GGNS-----ASKVLKFLSQ----GGTMVTYGG  228 (314)
Q Consensus       206 g~~~-----~~~~~~~l~~----~G~~v~~g~  228 (314)
                      +...     ....++.++.    -.++|.+++
T Consensus        72 ~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           72 APDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             CccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            8632     2445555543    268888774

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=95.34  E-value=0.084  Score=42.06  Aligned_cols=74  Identities=11%  Similarity=0.041  Sum_probs=48.8

Q ss_pred             CCCEEEEcCC----------------CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh--hH
Q 021311          124 SGDSIVQNGA----------------TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL--EV  185 (314)
Q Consensus       124 ~~~~vlI~g~----------------~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~~  185 (314)
                      .|+++||+|+                +|.+|.+.++.+...|++|+.+.++.. .+    .  ..|. ..++..+.  ..
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~----~--~~g~-~~~dv~~~~~~~   78 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP----T--PPFV-KRVDVMTALEME   78 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC----C--CTTE-EEEECCSHHHHH
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc----c--CCCC-eEEccCcHHHHH
Confidence            5799999999                589999999999999999988775421 00    0  1122 23443331  12


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCc
Q 021311          186 KNVKGLLANLPEPALGFNCVGGN  208 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~  208 (314)
                      +.+.+..+   ++|+++.|++-.
T Consensus        79 ~~v~~~~~---~~Dili~~Aav~   98 (226)
T 1u7z_A           79 AAVNASVQ---QQNIFIGCAAVA   98 (226)
T ss_dssp             HHHHHHGG---GCSEEEECCBCC
T ss_pred             HHHHHhcC---CCCEEEECCccc
Confidence            33433333   499999999864

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=95.33  E-value=0.07  Score=42.64  Aligned_cols=75  Identities=11%  Similarity=0.041  Sum_probs=48.9

Q ss_pred             CCCEEEEcCC----------------CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh--hH
Q 021311          124 SGDSIVQNGA----------------TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL--EV  185 (314)
Q Consensus       124 ~~~~vlI~g~----------------~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~~  185 (314)
                      .|++|||+|+                +|.+|.+.++.+...|++|+.+.++.....     ....+. .+++....  -.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~-----~~~~~~-~~~~v~s~~em~   75 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP-----EPHPNL-SIREITNTKDLL   75 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC-----CCCTTE-EEEECCSHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----cCCCCe-EEEEHhHHHHHH
Confidence            5889999999                789999999999999999999886532110     000121 23333321  12


Q ss_pred             HHHHHHhcCCCCCcEEEecCCC
Q 021311          186 KNVKGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~  207 (314)
                      +.+.+..+   ++|+++.+++-
T Consensus        76 ~~v~~~~~---~~Dili~aAAv   94 (232)
T 2gk4_A           76 IEMQERVQ---DYQVLIHSMAV   94 (232)
T ss_dssp             HHHHHHGG---GCSEEEECSBC
T ss_pred             HHHHHhcC---CCCEEEEcCcc
Confidence            34444443   49999999985

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.33  E-value=0.029  Score=45.05  Aligned_cols=98  Identities=13%  Similarity=0.054  Sum_probs=60.1

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHh----CCCcEEEecChhhHHHHHHHhc
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKG----LGADEVFTESQLEVKNVKGLLA  193 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~i~~~~~  193 (314)
                      ..++||++||=.|++  .|..+..+|+..|.  +++++- .   +++..+.+++    .+....+..+....+...   .
T Consensus        73 l~ikpG~~VldlG~G--~G~~~~~la~~VG~~G~V~avD-~---s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~---~  143 (233)
T 4df3_A           73 LPVKEGDRILYLGIA--SGTTASHMSDIIGPRGRIYGVE-F---APRVMRDLLTVVRDRRNIFPILGDARFPEKYR---H  143 (233)
T ss_dssp             CCCCTTCEEEEETCT--TSHHHHHHHHHHCTTCEEEEEE-C---CHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT---T
T ss_pred             cCCCCCCEEEEecCc--CCHHHHHHHHHhCCCceEEEEe-C---CHHHHHHHHHhhHhhcCeeEEEEeccCccccc---c
Confidence            668999999999983  48888899998875  455555 2   6666665543    222222222211111111   1


Q ss_pred             CCCCCcEEEecCCCcc-----HHHHHHhcccCCEEEEE
Q 021311          194 NLPEPALGFNCVGGNS-----ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~~-----~~~~~~~l~~~G~~v~~  226 (314)
                      ..+.+|+||-......     +.++.+.|+|+|++++.
T Consensus       144 ~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          144 LVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            1124899886554432     35677889999999875

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=95.33  E-value=0.091  Score=45.75  Aligned_cols=36  Identities=8%  Similarity=0.087  Sum_probs=29.2

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      -..+.+|||+|++|.+|..++..+...|.+|+++.+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r   43 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   43 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEe
Confidence            456799999999999999999888888999988864

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.33  E-value=0.056  Score=46.52  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      |++|.|+|. |.+|...++.++.+|.+++...+.    . ..+.+...|...    .  ..+++   ..   ..|+|+-+
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~~fG~~V~~~d~~----~-~~~~~~~~g~~~----~--~l~el---l~---~aDvV~l~  237 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLSGFRARIRVFDPW----L-PRSMLEENGVEP----A--SLEDV---LT---KSDFIFVV  237 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHTTSCCEEEEECSS----S-CHHHHHHTTCEE----C--CHHHH---HH---SCSEEEEC
T ss_pred             CCEEEEecC-CcccHHHHHhhhhCCCEEEEECCC----C-CHHHHhhcCeee----C--CHHHH---Hh---cCCEEEEc
Confidence            789999999 999999999999999998876642    1 223344566531    1  12222   22   38999888


Q ss_pred             CCCc-----cH-HHHHHhcccCCEEEEEc
Q 021311          205 VGGN-----SA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~~-----~~-~~~~~~l~~~G~~v~~g  227 (314)
                      +...     .. ...+..|++++.+|.++
T Consensus       238 ~Plt~~T~~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          238 AAVTSENKRFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             SCSSCC---CCCHHHHHTSCTTCEEEECS
T ss_pred             CcCCHHHHhhcCHHHHhcCCCCcEEEECc
Confidence            7642     12 67788899999988887

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.30  E-value=0.0092  Score=50.27  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=31.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +.+|||+|++|.+|..++..+...|.+++++.+.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   40 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDL   40 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            5799999999999999999998889999999865

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.29  E-value=0.079  Score=43.48  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=55.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +++++|+|+ |++|.+++..+...|.++.++.+..   +...+.+ +++.. .....+     +     .  .+|+|++|
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~---~ka~~la-~~~~~-~~~~~~-----l-----~--~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSS---RGLDFFQ-RLGCD-CFMEPP-----K-----S--AFDLIINA  179 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC---TTHHHHH-HHTCE-EESSCC-----S-----S--CCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHH-HCCCe-EecHHH-----h-----c--cCCEEEEc
Confidence            899999999 9999999999999996666655432   2222333 56632 232222     1     1  39999999


Q ss_pred             CCCc-----cH-HH-HHHhcccCCEEEEEcC
Q 021311          205 VGGN-----SA-SK-VLKFLSQGGTMVTYGG  228 (314)
Q Consensus       205 ~g~~-----~~-~~-~~~~l~~~G~~v~~g~  228 (314)
                      ++..     .+ .. ....++++..++.+..
T Consensus       180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          180 TSASLHNELPLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             CTTCCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred             ccCCCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence            8753     22 22 2336788888888763

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.24  E-value=0.15  Score=40.44  Aligned_cols=96  Identities=15%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHH----hCC-------CcEEEecChhhHHH
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLK----GLG-------ADEVFTESQLEVKN  187 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~----~lg-------~~~~~~~~~~~~~~  187 (314)
                      .++++++||-.|+ |. |..+..+++..|  .+++++- .   ++...+.++    ..+       ...++..+...   
T Consensus        74 ~~~~~~~vLDiG~-G~-G~~~~~la~~~~~~~~v~~vD-~---s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---  144 (226)
T 1i1n_A           74 QLHEGAKALDVGS-GS-GILTACFARMVGCTGKVIGID-H---IKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM---  144 (226)
T ss_dssp             TSCTTCEEEEETC-TT-SHHHHHHHHHHCTTCEEEEEE-S---CHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG---
T ss_pred             hCCCCCEEEEEcC-Cc-CHHHHHHHHHhCCCcEEEEEe-C---CHHHHHHHHHHHHhhcccccCCCcEEEEECCccc---
Confidence            3789999999998 43 888888888876  3555544 3   566555553    222       11222222110   


Q ss_pred             HHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcC
Q 021311          188 VKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~  228 (314)
                      .  .... +.||+|+....... ...+.+.|+++|+++..-.
T Consensus       145 ~--~~~~-~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          145 G--YAEE-APYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             C--CGGG-CCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             C--cccC-CCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEe
Confidence            0  0111 24999987766544 4888999999999988653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.21  E-value=0.079  Score=43.65  Aligned_cols=89  Identities=8%  Similarity=-0.029  Sum_probs=54.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHH-HHHHhCCC--cEEEecChhhHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAK-EKLKGLGA--DEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~-~~~~~lg~--~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      .+++++|+|+ |++|.+++..+...|+ +++++.+    +.++. +.++.++.  ..+....+     +.   . . .+|
T Consensus       119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R----~~~~a~~la~~~~~~~~~~~~~~~-----l~---~-~-~~D  183 (272)
T 3pwz_A          119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANR----DMAKALALRNELDHSRLRISRYEA-----LE---G-Q-SFD  183 (272)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECS----CHHHHHHHHHHHCCTTEEEECSGG-----GT---T-C-CCS
T ss_pred             cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeC----CHHHHHHHHHHhccCCeeEeeHHH-----hc---c-c-CCC
Confidence            5899999999 8999999988888997 4544443    44443 34444543  22222221     11   1 2 499


Q ss_pred             EEEecCCCccHH----HHHHhcccCCEEEEEc
Q 021311          200 LGFNCVGGNSAS----KVLKFLSQGGTMVTYG  227 (314)
Q Consensus       200 ~v~d~~g~~~~~----~~~~~l~~~G~~v~~g  227 (314)
                      +|++|++.....    .-.+.++++..++.+.
T Consensus       184 ivInaTp~gm~~~~~~i~~~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          184 IVVNATSASLTADLPPLPADVLGEAALAYELA  215 (272)
T ss_dssp             EEEECSSGGGGTCCCCCCGGGGTTCSEEEESS
T ss_pred             EEEECCCCCCCCCCCCCCHHHhCcCCEEEEee
Confidence            999998753221    1124567777777665

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=95.19  E-value=0.1  Score=42.63  Aligned_cols=88  Identities=9%  Similarity=0.113  Sum_probs=54.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||+|++|.+|..+++.+.. |.+++++.+....     .    -+  ...|..+  .+.+.+...+. ++|+||.|+|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~-----~----~~--~~~Dl~~--~~~~~~~~~~~-~~d~vi~~a~   66 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEI-----Q----GG--YKLDLTD--FPRLEDFIIKK-RPDVIINAAA   66 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCC-----T----TC--EECCTTS--HHHHHHHHHHH-CCSEEEECCC
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcC-----C----CC--ceeccCC--HHHHHHHHHhc-CCCEEEECCc
Confidence            589999999999999987774 8899988865311     0    12  2233332  22333333222 3999999998


Q ss_pred             Ccc------------------HHHHHHhc-ccCCEEEEEcCC
Q 021311          207 GNS------------------ASKVLKFL-SQGGTMVTYGGM  229 (314)
Q Consensus       207 ~~~------------------~~~~~~~l-~~~G~~v~~g~~  229 (314)
                      ...                  ...+++.+ +.++++|.+++.
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~  108 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTD  108 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecc
Confidence            532                  12233333 345799988754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.18  E-value=0.16  Score=41.94  Aligned_cols=89  Identities=17%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCcE-EEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGADE-VFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .+|.|+|+ |.+|.+.++.++..|.  +++++.    .++++.+.+.+.|... .....       .+....  ..|+|+
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d----~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~--~aDvVi   67 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYD----INPESISKAVDLGIIDEGTTSI-------AKVEDF--SPDFVM   67 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEEC----SCHHHHHHHHHTTSCSEEESCG-------GGGGGT--CCSEEE
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEe----CCHHHHHHHHHCCCcccccCCH-------HHHhcC--CCCEEE
Confidence            36899998 9999999998888887  665544    2667777777777642 11111       111120  289999


Q ss_pred             ecCCCccH----HHHHHhcccCCEEEEEcC
Q 021311          203 NCVGGNSA----SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       203 d~~g~~~~----~~~~~~l~~~G~~v~~g~  228 (314)
                      .|+.....    ......++++..++.+++
T Consensus        68 lavp~~~~~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           68 LSSPVRTFREIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             EcCCHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            99987544    333445677776666553

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=95.15  E-value=0.018  Score=50.79  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      .++++|||+||+|.+|..++..+...|.+++++++..
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~  103 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRAD  103 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3467999999999999999988888899999998764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.14  E-value=0.086  Score=44.79  Aligned_cols=87  Identities=10%  Similarity=0.137  Sum_probs=57.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...++.++..|.+++++.+.    .++.+.+...|....      ..+++   ..   ..|+|+.
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~----~~~~~~~~~~g~~~~------~l~e~---l~---~aDvVi~  216 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGR----QPRPEEAAEFQAEFV------STPEL---AA---QSDFIVV  216 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESS----SCCHHHHHTTTCEEC------CHHHH---HH---HCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCC----CcchhHHHhcCceeC------CHHHH---Hh---hCCEEEE
Confidence            4689999999 999999999999999998877643    222233445554321      11121   11   2888888


Q ss_pred             cCCCcc-----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGNS-----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~~-----~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++....     + ...+..|+++..++.++
T Consensus       217 ~vp~~~~t~~~i~~~~~~~mk~gailIn~s  246 (330)
T 2gcg_A          217 ACSLTPATEGLCNKDFFQKMKETAVFINIS  246 (330)
T ss_dssp             CCCCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred             eCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            886531     2 45667788888777665

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.14  E-value=0.1  Score=41.52  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCcEEEecChhhHHHHHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGADEVFTESQLEVKNVKGL  191 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~i~~~  191 (314)
                      +.....+.++++||-.|+ |. |..+..+++.. .+++++- .   ++...+.+++    .+...++..+-..     ..
T Consensus        62 ~~~~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~-~~v~~vD-~---~~~~~~~a~~~~~~~~~v~~~~~d~~~-----~~  129 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGT-GI-GYYTALIAEIV-DKVVSVE-I---NEKMYNYASKLLSYYNNIKLILGDGTL-----GY  129 (231)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHS-SEEEEEE-S---CHHHHHHHHHHHTTCSSEEEEESCGGG-----CC
T ss_pred             HHHhcCCCCCCEEEEEcC-CC-CHHHHHHHHHc-CEEEEEe-C---CHHHHHHHHHHHhhcCCeEEEECCccc-----cc
Confidence            334467889999999998 43 77888788764 5665555 2   6666666643    2211222222111     01


Q ss_pred             hcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          192 LANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      ... +.+|+|+.+...... ..+.+.|+++|+++..-.
T Consensus       130 ~~~-~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          130 EEE-KPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             GGG-CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             ccC-CCccEEEECCcHHHHHHHHHHHcCCCcEEEEEEc
Confidence            111 249999977665444 788899999999988753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.13  E-value=0.081  Score=43.96  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=31.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.++|.+.
T Consensus        35 ~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4589999999 99999999988889999998887653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.13  E-value=0.19  Score=54.19  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=51.1

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEE-ecCCCCcHH---HHHHHHhCCCcEEE---ecCh-hhHHHHHHHhcC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINI-IRDRAGSDE---AKEKLKGLGADEVF---TESQ-LEVKNVKGLLAN  194 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~-~~~~~~~~~---~~~~~~~lg~~~~~---~~~~-~~~~~i~~~~~~  194 (314)
                      .+++++||+|++|++|+++++.+...|++++++ .+.....+.   ..+.++..|....+   |-.+ ..++++.+....
T Consensus      1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A         1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            578899999999999999999999999985544 443222222   22333445654332   2222 222222221111


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|.+|.+++++|.
T Consensus      1962 ~g~id~lVnnAgv 1974 (2512)
T 2vz8_A         1962 LGPVGGVFNLAMV 1974 (2512)
T ss_dssp             HSCEEEEEECCCC
T ss_pred             cCCCcEEEECCCc
Confidence            2359999999984

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=95.03  E-value=0.045  Score=45.96  Aligned_cols=70  Identities=11%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|||+|++|.+|..+++.+...  |.+++++.+......         +.. .+..+-.+.+.+.+..... ++|+||.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---------~~~-~~~~D~~d~~~~~~~~~~~-~~d~vih~   69 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG---------GIK-FITLDVSNRDEIDRAVEKY-SIDAIFHL   69 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT---------TCC-EEECCTTCHHHHHHHHHHT-TCCEEEEC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------Cce-EEEecCCCHHHHHHHHhhc-CCcEEEEC
Confidence            4899999999999998877766  788988875432111         222 2222222233444444322 39999999


Q ss_pred             CCC
Q 021311          205 VGG  207 (314)
Q Consensus       205 ~g~  207 (314)
                      ++.
T Consensus        70 a~~   72 (317)
T 3ajr_A           70 AGI   72 (317)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            985

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.02  E-value=0.018  Score=46.86  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc--E-EEecChhhHHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD--E-VFTESQLEVKNV  188 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~--~-~~~~~~~~~~~i  188 (314)
                      +.....+.++.+||-.|+ |. |..+..+++..+++++++--    ++...+.++    ..|..  . ....+-.     
T Consensus        28 l~~~~~~~~~~~VLDiGc-G~-G~~~~~la~~~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-----   96 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGS-GS-GEMLCTWARDHGITGTGIDM----SSLFTAQAKRRAEELGVSERVHFIHNDAA-----   96 (256)
T ss_dssp             HHHHTCCCTTCEEEEETC-TT-CHHHHHHHHHTCCEEEEEES----CHHHHHHHHHHHHHTTCTTTEEEEESCCT-----
T ss_pred             HHHhcCCCCCCEEEEECC-CC-CHHHHHHHHhcCCeEEEEeC----CHHHHHHHHHHHHhcCCCcceEEEECChH-----
Confidence            344467899999999998 33 77888888888888866652    565555553    33422  1 2211111     


Q ss_pred             HHHhcCCCCCcEEEecCCCc-------cHHHHHHhcccCCEEEEEc
Q 021311          189 KGLLANLPEPALGFNCVGGN-------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g  227 (314)
                       +.... +.||+|+......       .+..+.+.|+|+|+++...
T Consensus        97 -~~~~~-~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A           97 -GYVAN-EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             -TCCCS-SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -hCCcC-CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence             11111 2599998633221       1367778999999998764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.00  E-value=0.089  Score=48.03  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR  159 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~  159 (314)
                      +.+|+|.|+ |++|..++..+...|...+.++|.+
T Consensus       327 ~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            589999999 9999999999999999999888654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=94.98  E-value=0.068  Score=40.93  Aligned_cols=98  Identities=15%  Similarity=0.205  Sum_probs=59.6

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCC--c-EEEecChhhHHHHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGA--D-EVFTESQLEVKNVK  189 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~--~-~~~~~~~~~~~~i~  189 (314)
                      .....+.++++||-.|+ |. |..+..+++.. .+++++- .   ++...+.+++    .+.  . .++..+   ...  
T Consensus        26 ~~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~-~~v~~~D-~---~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~--   93 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGC-GT-GGVTLELAGRV-RRVYAID-R---NPEAISTTEMNLQRHGLGDNVTLMEGD---APE--   93 (192)
T ss_dssp             HHHHCCCTTCEEEEESC-TT-SHHHHHHHTTS-SEEEEEE-S---CHHHHHHHHHHHHHTTCCTTEEEEESC---HHH--
T ss_pred             HHhcCCCCCCEEEEECC-CC-CHHHHHHHHhc-CEEEEEE-C---CHHHHHHHHHHHHHcCCCcceEEEecC---HHH--
Confidence            34467889999999998 44 77777777765 5555554 3   5666555543    443  1 122221   111  


Q ss_pred             HHhcCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                       .....+.+|+|+.+.....    +..+.+.|+++|+++...
T Consensus        94 -~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A           94 -ALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             -HHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -hcccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence             1111124999997655322    367778899999998764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=94.96  E-value=0.064  Score=43.19  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHHHH
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNVKG  190 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i~~  190 (314)
                      ....+.++||-+|+  +.|..++.+++.+  +.+++++- .   +++..+.++    ..|..   .++..+..  +.+..
T Consensus        66 ~~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD-~---~~~~~~~a~~~~~~~g~~~~i~~~~gda~--~~l~~  137 (237)
T 3c3y_A           66 LKLVNAKKTIEVGV--FTGYSLLLTALSIPDDGKITAID-F---DREAYEIGLPFIRKAGVEHKINFIESDAM--LALDN  137 (237)
T ss_dssp             HHHTTCCEEEEECC--TTSHHHHHHHHHSCTTCEEEEEE-S---CHHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHH
T ss_pred             HHhhCCCEEEEeCC--CCCHHHHHHHHhCCCCCEEEEEE-C---CHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHH
Confidence            44567789999987  3577788888876  44555444 3   566555553    34542   12222211  12222


Q ss_pred             HhcC---CCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          191 LLAN---LPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~---~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      +...   .+.||+||-......    +..+.+.|++||.++.-.
T Consensus       138 l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          138 LLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence            2111   225999996654432    377889999999988754

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.93  E-value=0.073  Score=45.27  Aligned_cols=35  Identities=14%  Similarity=0.143  Sum_probs=30.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .+.+|||+|++|.+|..+++.+...|.+|+++.+.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45799999999999999998888889999988864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=94.92  E-value=0.028  Score=48.26  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=45.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcC--CCCCcEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLAN--LPEPALG  201 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~--~g~~d~v  201 (314)
                      +.+|||+|++|.+|..+++.+...| .+++++.+....  .....+....  ...|..+  .+.+.....+  .+++|+|
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~--~~~d~~~--~~~~~~~~~~~~~~~~d~V  119 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG--TKFVNLVDLN--IADYMDK--EDFLIQIMAGEEFGDVEAI  119 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSG--GGGGGTTTSC--CSEEEEH--HHHHHHHHTTCCCSSCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCc--chhhcccCce--EeeecCc--HHHHHHHHhhcccCCCCEE
Confidence            4789999999999999998888889 888888764321  1111111111  1112121  2233333322  1249999


Q ss_pred             EecCCC
Q 021311          202 FNCVGG  207 (314)
Q Consensus       202 ~d~~g~  207 (314)
                      |.+++.
T Consensus       120 ih~A~~  125 (357)
T 2x6t_A          120 FHEGAC  125 (357)
T ss_dssp             EECCSC
T ss_pred             EECCcc
Confidence            999984

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.87  E-value=0.17  Score=40.48  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      ....++++|+|+ |.+|...++.+...|. ++++. .   ++++.+.+. .+. .++..+..+.+.+.+..-.  ++|.+
T Consensus         6 ~~~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid-~---~~~~~~~~~-~~~-~~i~gd~~~~~~l~~a~i~--~ad~v   75 (234)
T 2aef_A            6 VAKSRHVVICGW-SESTLECLRELRGSEV-FVLAE-D---ENVRKKVLR-SGA-NFVHGDPTRVSDLEKANVR--GARAV   75 (234)
T ss_dssp             ----CEEEEESC-CHHHHHHHHHSTTSEE-EEEES-C---GGGHHHHHH-TTC-EEEESCTTCHHHHHHTTCT--TCSEE
T ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEE-C---CHHHHHHHh-cCC-eEEEcCCCCHHHHHhcCcc--hhcEE
Confidence            345679999999 9999998888887787 55444 2   566666666 554 3444443333344433112  49999


Q ss_pred             EecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          202 FNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      +-+++.+..    ....+.+.+..+++...
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            999987643    34445566766777654

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=94.86  E-value=0.045  Score=45.86  Aligned_cols=75  Identities=15%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||+|++|.+|..+++.+...|.+++++.+......+   .+. -+.. .+..+-.+.+.+.+..... ++|+|+.+++
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~-~~~~-~~~~Dl~~~~~~~~~~~~~-~~d~vi~~a~   75 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---NVP-KGVP-FFRVDLRDKEGVERAFREF-RPTHVSHQAA   75 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---GSC-TTCC-EECCCTTCHHHHHHHHHHH-CCSEEEECCS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---hcc-cCeE-EEECCCCCHHHHHHHHHhc-CCCEEEECcc
Confidence            68999999999999999888889999888753211111   110 1222 2222211223333333222 3999999987


Q ss_pred             C
Q 021311          207 G  207 (314)
Q Consensus       207 ~  207 (314)
                      .
T Consensus        76 ~   76 (311)
T 2p5y_A           76 Q   76 (311)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.84  E-value=0.031  Score=43.97  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~  158 (314)
                      +.+|||+|++|.+|..+++.+...|.  +++++.+.
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            57899999999999999999998898  88877764

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=94.83  E-value=0.06  Score=46.80  Aligned_cols=88  Identities=13%  Similarity=0.053  Sum_probs=57.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|+++.|+|. |.+|...++.++.+|.++++..+..    ...+....+|....   .  ..+   ++..   ..|+|+.
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~~V~~~d~~~----~~~~~~~~~G~~~~---~--~l~---ell~---~aDvV~l  253 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR----LPESVEKELNLTWH---A--TRE---DMYP---VCDVVTL  253 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC----CCHHHHHHHTCEEC---S--SHH---HHGG---GCSEEEE
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEEcCCc----cchhhHhhcCceec---C--CHH---HHHh---cCCEEEE
Confidence            5789999999 9999999999999999988766431    12233444554321   1  111   2222   2788888


Q ss_pred             cCCCc-----cH-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGN-----SA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~-----~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++...     .+ ...+..|+++..+|.++
T Consensus       254 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  283 (393)
T 2nac_A          254 NCPLHPETEHMINDETLKLFKRGAYIVNTA  283 (393)
T ss_dssp             CSCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             ecCCchHHHHHhhHHHHhhCCCCCEEEECC
Confidence            77642     12 46667788877777766

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.82  E-value=0.15  Score=42.25  Aligned_cols=88  Identities=11%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      -.+++++|+|+ |+.|.+++..+...|++.+.++..   +.++.+.+ ..+.   ...     .+++.+    . .+|+|
T Consensus       120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nR---t~~ka~~La~~~~---~~~-----~~~l~~----l-~~Div  182 (282)
T 3fbt_A          120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTR---NPEKTSEIYGEFK---VIS-----YDELSN----L-KGDVI  182 (282)
T ss_dssp             CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEES---CHHHHHHHCTTSE---EEE-----HHHHTT----C-CCSEE
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeC---CHHHHHHHHHhcC---ccc-----HHHHHh----c-cCCEE
Confidence            35899999999 889999998888999954444432   44443333 3331   221     223332    1 39999


Q ss_pred             EecCCCccH------HHHHHhcccCCEEEEEc
Q 021311          202 FNCVGGNSA------SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~~------~~~~~~l~~~G~~v~~g  227 (314)
                      ++|++....      ..-...++++..++.+.
T Consensus       183 InaTp~Gm~~~~~~~pi~~~~l~~~~~v~Dlv  214 (282)
T 3fbt_A          183 INCTPKGMYPKEGESPVDKEVVAKFSSAVDLI  214 (282)
T ss_dssp             EECSSTTSTTSTTCCSSCHHHHTTCSEEEESC
T ss_pred             EECCccCccCCCccCCCCHHHcCCCCEEEEEe
Confidence            999864221      12345677777777765

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=94.81  E-value=0.12  Score=47.32  Aligned_cols=36  Identities=14%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      .+.+|+|.|+ |++|..++..+...|...+.++|.+.
T Consensus       325 ~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4689999999 99999999999999999999987653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=94.81  E-value=0.063  Score=43.40  Aligned_cols=106  Identities=11%  Similarity=0.099  Sum_probs=60.7

Q ss_pred             hhcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCc---EEEecChhhHHHHHHHhc
Q 021311          119 FTTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGAD---EVFTESQLEVKNVKGLLA  193 (314)
Q Consensus       119 ~~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~---~~~~~~~~~~~~i~~~~~  193 (314)
                      +....++++||=+|++  .|..++.+|+..  +.+++++-..+..-+..++.++..|..   .++..+..  +.+..+..
T Consensus        55 l~~~~~~~~VLDiG~G--~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~--~~l~~~~~  130 (242)
T 3r3h_A           55 LIRLTRAKKVLELGTF--TGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL--DTLHSLLN  130 (242)
T ss_dssp             HHHHHTCSEEEEEESC--CSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHH--HHHHHHHH
T ss_pred             HHhhcCcCEEEEeeCC--cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHhh
Confidence            3445677899999873  367777788865  456666654332223334455555542   22222221  11222211


Q ss_pred             --CCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEcC
Q 021311          194 --NLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       194 --~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g~  228 (314)
                        ..+.||+||-......    +..+.+.|+|||.++.-..
T Consensus       131 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          131 EGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             HHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECC
Confidence              1125999986655432    3678899999999987543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=94.80  E-value=0.043  Score=46.62  Aligned_cols=87  Identities=11%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...++.++.+|+++++..+.    ....+....+|...    .  ..+++   ..   ..|+|+.
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~~~d~~----~~~~~~~~~~g~~~----~--~l~el---l~---~aDvV~l  206 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQGWGATLQYHEAK----ALDTQTEQRLGLRQ----V--ACSEL---FA---SSDFILL  206 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTTSCCEEEEECSS----CCCHHHHHHHTEEE----C--CHHHH---HH---HCSEEEE
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCC----CCcHhHHHhcCcee----C--CHHHH---Hh---hCCEEEE
Confidence            4789999999 999999999999999998877643    21223334445421    1  12222   21   2888888


Q ss_pred             cCCCc-----cH-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGN-----SA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~-----~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++...     .+ ...+..|+++..+|.++
T Consensus       207 ~~P~t~~t~~li~~~~l~~mk~gailIN~a  236 (330)
T 4e5n_A          207 ALPLNADTLHLVNAELLALVRPGALLVNPC  236 (330)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             cCCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence            87642     12 57778888888888876

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.78  E-value=0.022  Score=46.72  Aligned_cols=93  Identities=12%  Similarity=0.003  Sum_probs=57.2

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      ++|||+|++|.+|..++..+...|.+++++.+......       ..+. ..+..+-.+.+.+.+...+   +|+||.++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~~~~-~~~~~Dl~d~~~~~~~~~~---~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-------EAHE-EIVACDLADAQAVHDLVKD---CDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-------CTTE-EECCCCTTCHHHHHHHHTT---CSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-------CCCc-cEEEccCCCHHHHHHHHcC---CCEEEECC
Confidence            47999999999999999888888888888876432110       0111 2222222233445555543   99999998


Q ss_pred             CCc---cH-----------HHHHHhccc--CCEEEEEcCC
Q 021311          206 GGN---SA-----------SKVLKFLSQ--GGTMVTYGGM  229 (314)
Q Consensus       206 g~~---~~-----------~~~~~~l~~--~G~~v~~g~~  229 (314)
                      +..   .+           ..+++.+.+  .+++|.+++.
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  111 (267)
T 3ay3_A           72 GVSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSN  111 (267)
T ss_dssp             SCCSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCH
Confidence            752   11           233444433  3589988754

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=94.78  E-value=0.093  Score=44.94  Aligned_cols=89  Identities=16%  Similarity=0.137  Sum_probs=55.8

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHH-HcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIAR-HRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      -.|++|.|+|. |.+|...++.++ .+|.++++..+..    .+.+...++|...+   .  ..+++   ..   ..|+|
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~~~d~~~----~~~~~~~~~g~~~~---~--~l~el---l~---~aDvV  224 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGMKLVYYDVAP----ADAETEKALGAERV---D--SLEEL---AR---RSDCV  224 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSC----CCHHHHHHHTCEEC---S--SHHHH---HH---HCSEE
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCCEEEEECCCC----cchhhHhhcCcEEe---C--CHHHH---hc---cCCEE
Confidence            35789999999 999999999999 9999887665432    22222333454321   1  11121   11   27888


Q ss_pred             EecCCCcc-----H-HHHHHhcccCCEEEEEc
Q 021311          202 FNCVGGNS-----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~-----~-~~~~~~l~~~G~~v~~g  227 (314)
                      +.++....     + ...+..|+++..++.++
T Consensus       225 il~vp~~~~t~~li~~~~l~~mk~gailin~s  256 (348)
T 2w2k_A          225 SVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA  256 (348)
T ss_dssp             EECCCCSGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred             EEeCCCChHHHHHhhHHHHhcCCCCCEEEECC
Confidence            88776521     1 35667777777776665

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=94.77  E-value=0.56  Score=40.51  Aligned_cols=98  Identities=13%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHH--------------
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK--------------  189 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~--------------  189 (314)
                      .+|.|.|++|++|..++.+.+...  .++.+++... .-+...+.+++++...+...+......++              
T Consensus         5 ~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~-ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~   83 (388)
T 1r0k_A            5 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR-NVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   83 (388)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS-CHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             eEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCC-CHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence            578999999999999998887652  5666663221 23444566678888877654433222222              


Q ss_pred             ----HHhcCCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEE
Q 021311          190 ----GLLANLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       190 ----~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  226 (314)
                          ++.. .. +|+|+++.++ .-....+..++.|-++++.
T Consensus        84 ~~~~el~~-~~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlA  123 (388)
T 1r0k_A           84 DALVEAAM-MG-ADWTMAAIIGCAGLKATLAAIRKGKTVALA  123 (388)
T ss_dssp             HHHHHHHT-SC-CSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             cHHHHHHc-CC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEe
Confidence                2332 34 8999999955 3446777888888777764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=94.76  E-value=0.033  Score=46.86  Aligned_cols=98  Identities=19%  Similarity=0.185  Sum_probs=61.5

Q ss_pred             Hhhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHHH
Q 021311          118 DFTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNVK  189 (314)
Q Consensus       118 ~~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i~  189 (314)
                      +... ++++++||-.|+ | .|..+..+++..|++++++--    +++..+.++    ..|..   ..+..+-.      
T Consensus       110 ~~l~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~------  177 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGC-G-RGGSMVMAHRRFGSRVEGVTL----SAAQADFGNRRARELRIDDHVRSRVCNML------  177 (312)
T ss_dssp             TTSCCCCTTCEEEEESC-T-TSHHHHHHHHHHCCEEEEEES----CHHHHHHHHHHHHHTTCTTTEEEEECCTT------
T ss_pred             HHhccCCCCCEEEEecC-C-CCHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHHHHcCCCCceEEEECChh------
Confidence            3344 789999999998 3 378888888877888777663    566665554    34422   12211111      


Q ss_pred             HHhcCCCCCcEEEecCCC------ccHHHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGG------NSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~------~~~~~~~~~l~~~G~~v~~g  227 (314)
                      +..-..+.||+|+.+..-      ..+..+.+.|+|+|+++...
T Consensus       178 ~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          178 DTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             SCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            111111259999875432      22378889999999999876

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=94.76  E-value=0.5  Score=40.46  Aligned_cols=99  Identities=14%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHh--cC-------
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLL--AN-------  194 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~--~~-------  194 (314)
                      ++|.|.|++|++|..++.+.+..  .+++++++..+ .-+.-.+.++++....+.-.++...+.+++..  .+       
T Consensus        10 k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag~-nv~~L~~q~~~f~p~~v~v~d~~~~~~L~~~l~~~~~~~~v~~   88 (406)
T 1q0q_A           10 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK-NVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   88 (406)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS-CHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             eeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcCC-CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEe
Confidence            68899999999999999999986  57888887643 24444567788999888777665444444433  11       


Q ss_pred             ----------CCCCcEEEecCCCc-cHHHHHHhcccCCEEEE
Q 021311          195 ----------LPEPALGFNCVGGN-SASKVLKFLSQGGTMVT  225 (314)
Q Consensus       195 ----------~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~  225 (314)
                                ...+|+|++..-+. -+.-.+..++.|-++.+
T Consensus        89 G~~~l~~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaL  130 (406)
T 1q0q_A           89 GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL  130 (406)
T ss_dssp             SHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHhcCCCCCEEEEccccHhHHHHHHHHHHCCCeEEE
Confidence                      12489998877653 33455555555544443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=94.74  E-value=0.095  Score=44.30  Aligned_cols=87  Identities=14%  Similarity=0.086  Sum_probs=59.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec-CCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR-DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|++|.|+|. |.+|...++.++.+|.++++..+ ..  ..   ..+.++|... .  .  ..+++   ..   ..|+|+
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~--~~---~~~~~~g~~~-~--~--~l~el---l~---~aDvVi  207 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRA--SS---SDEASYQATF-H--D--SLDSL---LS---VSQFFS  207 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC--CH---HHHHHHTCEE-C--S--SHHHH---HH---HCSEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCc--Ch---hhhhhcCcEE-c--C--CHHHH---Hh---hCCEEE
Confidence            5789999999 99999999999999998877664 31  11   2344556532 1  1  11222   21   289999


Q ss_pred             ecCCCcc-----H-HHHHHhcccCCEEEEEc
Q 021311          203 NCVGGNS-----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~~-----~-~~~~~~l~~~G~~v~~g  227 (314)
                      .++....     + ...+..|++++.++.++
T Consensus       208 l~~p~~~~t~~~i~~~~l~~mk~gailIn~a  238 (320)
T 1gdh_A          208 LNAPSTPETRYFFNKATIKSLPQGAIVVNTA  238 (320)
T ss_dssp             ECCCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             EeccCchHHHhhcCHHHHhhCCCCcEEEECC
Confidence            8887532     2 45678889988888877

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=94.72  E-value=0.12  Score=44.78  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=57.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC---cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI---HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~---~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      +.-+|+|+|+.|.+|+.|++.|+.+|+   .|.+.-.    ++      ...|..         ++.+.       ..|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~----~~------~~~g~~---------~~~i~-------~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDI----KE------TSRGGP---------FDEIP-------QADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECH----HH------HTTCSC---------CTHHH-------HSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeec----cc------cccCCc---------hhhHh-------hCCE
Confidence            456889999999999999999999998   5644431    11      011322         11232       2999


Q ss_pred             EEecCCC----cc--HHHHHHhc-ccCCEEEEEcCCCC
Q 021311          201 GFNCVGG----NS--ASKVLKFL-SQGGTMVTYGGMSK  231 (314)
Q Consensus       201 v~d~~g~----~~--~~~~~~~l-~~~G~~v~~g~~~~  231 (314)
                      +|+|+--    +.  ....++.| +++..+|.+..-.+
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA~D~G  304 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSADTT  304 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETTCCTT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEecCCC
Confidence            9999863    22  27888899 99999999975544

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=94.69  E-value=0.083  Score=44.07  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCC--CCCcEEEe
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANL--PEPALGFN  203 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~--g~~d~v~d  203 (314)
                      +|||+|++|.+|..+++.+...| .+++++.+....  .+...+..+.  ...|..+  .+.+.....+.  +++|+||.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~--~~~d~~~--~~~~~~~~~~~~~~~~d~vi~   74 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG--TKFVNLVDLN--IADYMDK--EDFLIQIMAGEEFGDVEAIFH   74 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSG--GGGHHHHTSC--CSEEEEH--HHHHHHHHTTCCCSSCCEEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCC--chhhhcCcce--ecccccc--HHHHHHHHhccccCCCcEEEE
Confidence            48999999999999998888889 888888765321  1112222222  1112222  22344433321  13999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      +++.
T Consensus        75 ~a~~   78 (310)
T 1eq2_A           75 EGAC   78 (310)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            9985

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=94.69  E-value=0.2  Score=41.53  Aligned_cols=98  Identities=16%  Similarity=0.205  Sum_probs=69.4

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ...|+++...+..|.+..---.|++++|.|.+..+|.=+.+++...+++|.++-..   +.                   
T Consensus       157 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---T~-------------------  214 (303)
T 4b4u_A          157 AYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR---TQ-------------------  214 (303)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---CS-------------------
T ss_pred             cccCccHHHHHHHHHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC---CC-------------------
Confidence            34555566666666553333579999999999999999999999999998766531   11                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                          ++.+.+.   ..|+++-++|.+.+-. -++++++..++.+|...
T Consensus       215 ----dl~~~~~---~ADIvV~A~G~p~~i~-~d~vk~GavVIDVGin~  254 (303)
T 4b4u_A          215 ----NLPELVK---QADIIVGAVGKAELIQ-KDWIKQGAVVVDAGFHP  254 (303)
T ss_dssp             ----SHHHHHH---TCSEEEECSCSTTCBC-GGGSCTTCEEEECCCBC
T ss_pred             ----CHHHHhh---cCCeEEeccCCCCccc-cccccCCCEEEEeceec
Confidence                1222233   3999999999876511 25789999999999654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.69  E-value=0.16  Score=42.23  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=55.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...++.++.+|.++++..+.....+    .     . .   ... ..+++   ..   ..|+|+-
T Consensus       121 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~----~-----~-~---~~~-~l~el---l~---~aDiV~l  179 (290)
T 3gvx_A          121 YGKALGILGY-GGIGRRVAHLAKAFGMRVIAYTRSSVDQN----V-----D-V---ISE-SPADL---FR---QSDFVLI  179 (290)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSCCCTT----C-----S-E---ECS-SHHHH---HH---HCSEEEE
T ss_pred             ecchheeecc-CchhHHHHHHHHhhCcEEEEEeccccccc----c-----c-c---ccC-ChHHH---hh---ccCeEEE
Confidence            4789999999 99999999999999999988875321111    0     1 1   111 11222   22   2888888


Q ss_pred             cCCC-cc----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGG-NS----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~-~~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++.. +.    + ...+..|+++..+|.++
T Consensus       180 ~~P~t~~t~~li~~~~l~~mk~gailIN~a  209 (290)
T 3gvx_A          180 AIPLTDKTRGMVNSRLLANARKNLTIVNVA  209 (290)
T ss_dssp             CCCCCTTTTTCBSHHHHTTCCTTCEEEECS
T ss_pred             EeeccccchhhhhHHHHhhhhcCceEEEee
Confidence            8774 21    2 56778888888888876

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.69  E-value=0.041  Score=45.47  Aligned_cols=88  Identities=11%  Similarity=0.002  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+++++|+|+ |++|.+++..+...|+ +++++.+    +.++   ++++-.. ...     ..+++.+...   .+|+|
T Consensus       116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R----~~~~---a~~la~~~~~~-----~~~~~~~~~~---~aDiV  179 (277)
T 3don_A          116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANR----TMSR---FNNWSLNINKI-----NLSHAESHLD---EFDII  179 (277)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECS----CGGG---GTTCCSCCEEE-----CHHHHHHTGG---GCSEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeC----CHHH---HHHHHHhcccc-----cHhhHHHHhc---CCCEE
Confidence            5789999999 9999999999999999 5555553    3332   2222211 111     1223333222   39999


Q ss_pred             EecCCCccHHH-----HHHhcccCCEEEEEc
Q 021311          202 FNCVGGNSASK-----VLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~~~~-----~~~~l~~~G~~v~~g  227 (314)
                      ++|++......     -...++++..++.+.
T Consensus       180 InaTp~Gm~~~~~~~l~~~~l~~~~~V~D~v  210 (277)
T 3don_A          180 INTTPAGMNGNTDSVISLNRLASHTLVSDIV  210 (277)
T ss_dssp             EECCC-------CCSSCCTTCCSSCEEEESC
T ss_pred             EECccCCCCCCCcCCCCHHHcCCCCEEEEec
Confidence            99987533211     134567777777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-26
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	2e-12
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	2e-11
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	9e-11
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	2e-09
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	2e-09
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	6e-09
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	3e-08
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-08
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	4e-08
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	4e-08
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	4e-08
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	5e-08
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	1e-07
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-07
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	3e-07
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	6e-07
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	9e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	1e-06
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-06
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	2e-06
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	2e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	3e-06
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	7e-06
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	8e-06
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	8e-06
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	8e-06
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	1e-05
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	3e-05
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-04
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	2e-04
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	4e-04
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	5e-04
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	5e-04
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	7e-04
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	0.002
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	0.002
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	0.002

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score =  101 bits (252), Expect = 1e-26
 Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 7/188 (3%)

Query: 99  MEYAATIIVNPLTALRMLEDFTTLNSGDS-IVQNGATSIVGQCIIQIARHRGIHSINIIR 157
           +   ATI VNPLTA  ML  +  L  G    +QNG TS VG+   QI +    +SI++IR
Sbjct: 3   INQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIR 62

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG-----FNCVGGNSASK 212
           DR   DE    LK LGA +V TE Q   +     +    + + G      NCVGG S++ 
Sbjct: 63  DRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTG 122

Query: 213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYL 272
           + + L+  G M+TYGGMS +P+T+ TS +IFK+ +  GFW+ + L + K     + ++ +
Sbjct: 123 IARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKE-LKTSTLNQI 181

Query: 273 LCLAREGK 280
           +    EGK
Sbjct: 182 IAWYEEGK 189

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.4 bits (150), Expect = 2e-12
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 5/183 (2%)

Query: 100 EYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR 159
             AAT  V  LTA   L +   L+ G+ ++ + AT  VG   + IA+  G          
Sbjct: 1   NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 60

Query: 160 AGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQ 219
           A  +           D    +   E+      L +     +  N + G +  + ++ L+ 
Sbjct: 61  AKREMLSRLGVEYVGDSRSVDFADEILE----LTDGYGVDVVLNSLAGEAIQRGVQILAP 116

Query: 220 GGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREG 279
           GG  +  G            A + K  S     L   L  + A   R ++ ++L    +G
Sbjct: 117 GGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPA-RYRQLLQHILQHVADG 175

Query: 280 KLK 282
           KL+
Sbjct: 176 KLE 178

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 98  PMEYA-ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII 156
           P+  A  TI +  LTA   L +   +  G++++ + A   VG  + QIA+ +G   +   
Sbjct: 2   PLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVG-- 59

Query: 157 RDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKF 216
              AGSDE    LK +G D  F    +         A+       F+ VGG   + VL  
Sbjct: 60  --AAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQ 117

Query: 217 LSQGGTMVTYGGMS------KKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMID 270
           +   G +   G +S      + P   S  + I+K L ++GF + +W    +    R+++ 
Sbjct: 118 MKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMK 177

Query: 271 YL 272
           ++
Sbjct: 178 WV 179

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 9e-11
 Identities = 24/128 (18%), Positives = 49/128 (38%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           ++     K++ V +K+ A  +NP +     G Y  +P +P   G +  G + +VG   + 
Sbjct: 22  DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA 81

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTL 122
              GD V  S   SG +  Y +      +K+ +       +   +  +          + 
Sbjct: 82  FKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSG 141

Query: 123 NSGDSIVQ 130
            +G  I+ 
Sbjct: 142 ATGKMILL 149

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 6/143 (4%)

Query: 111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 170
            ++  LE         S++  GAT  VG   + +   RG   +        + EA + LK
Sbjct: 10  LSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTG----NREAADYLK 65

Query: 171 GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS 230
            LGA EV +   +    +K L     +     + VGG   + +L  +  GG++   G   
Sbjct: 66  QLGASEVISREDVYDGTLKALSKQQWQ--GAVDPVGGKQLASLLSKIQYGGSVAVSGLTG 123

Query: 231 KKPITVSTSAFIFKDLSLKGFWL 253
              +  +   FI + +SL G   
Sbjct: 124 GGEVPATVYPFILRGVSLLGIDS 146

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 32/174 (18%), Positives = 54/174 (31%), Gaps = 48/174 (27%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+     K ++V +K++A  +  +D   + G  P     P + G+ G G V SVG  VT+
Sbjct: 23  EIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP-EGCFPVILGHLGAGIVESVGEGVTK 81

Query: 63  LAPGDWVIPSPPSS---------------------------------------------- 76
           L  GD VIP                                                   
Sbjct: 82  LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMG 141

Query: 77  -GTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIV 129
             T+  Y V       K+     ++   T  ++     +  E   +  S  ++V
Sbjct: 142 TSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVV 195

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 6e-09
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 6/155 (3%)

Query: 99  MEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD 158
            +  A I +   TA R L     + +G+S++ +GA+  VG    QIAR  G+  +     
Sbjct: 3   FKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT 62

Query: 159 RAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLS 218
             G     +     GA EVF   ++   +            +    +   + SK L  LS
Sbjct: 63  EEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLS 118

Query: 219 QGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWL 253
            GG ++  G      I ++    + K+ S+ G  L
Sbjct: 119 HGGRVIVVGSRG--TIEINPRDTMAKESSIIGVTL 151

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 14/181 (7%)

Query: 99  MEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD 158
            E AA   V+ LTA   L+       G+ ++   A   +G   +Q+AR  G+  +     
Sbjct: 3   PEEAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR 61

Query: 159 RAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLS 218
                E       LGA+E  T +++  +                  V G    + L  L+
Sbjct: 62  ----PEKLALPLALGAEEAATYAEVPERAKA------WGGLDLVLEVRGKEVEESLGLLA 111

Query: 219 QGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLL-CLAR 277
            GG +V  G    +   +     + ++L++ GFWL   L   +       + +LL  L R
Sbjct: 112 HGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLL--REGALVEEALGFLLPRLGR 169

Query: 278 E 278
           E
Sbjct: 170 E 170

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 14/186 (7%)

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
           P++    +     T      +   L  G      G   +    I+          I +  
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD- 60

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPA-LGFNCVGGNSASKVLKF 216
               + +   + K  GA E            + L+          F C+G     +    
Sbjct: 61  ---INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALE 117

Query: 217 LSQGGTMVTY--GGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC 274
               G  V+   G  +      +    +    + KG     W S          +  L+ 
Sbjct: 118 ACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKS-------VESVPKLVS 170

Query: 275 LAREGK 280
                K
Sbjct: 171 EYMSKK 176

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 36/167 (21%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV--PAVGGYEGVGEVYSVGSAV 60
           + P  E KE++V ++M    I  SD++  E        V  P V G+E  G V  VG  V
Sbjct: 17  QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNV 76

Query: 61  TRLAPGDWVIPSPPSS---------------------------GTWQSYVVKDQSVWHKV 93
             L  GD V   P                              G    Y V      HK+
Sbjct: 77  KHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKL 136

Query: 94  SKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQC 140
             +  ++   T        +   E      + ++I       ++  C
Sbjct: 137 PDNCNVKQLVTHSFKLEQTVDAFE-AARKKADNTIK------VMISC 176

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 37/163 (22%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSA-V 60
            +  P    ++D+ +K+ A  +  SDI+   G +    K+P V G+E VG+V  +G    
Sbjct: 24  TKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG-NMKMPLVVGHEIVGKVVKLGPKSN 82

Query: 61  TRLAPGDWV----------------------------------IPSPPSSGTWQSYVVKD 86
           + L  G  V                                       S G + +YV   
Sbjct: 83  SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVH 142

Query: 87  QSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIV 129
           +     + ++  +E           A   +E    +    ++V
Sbjct: 143 EHFVVPIPENIWVETLPVGEAGVHEAFERMEK-GDVRYRFTLV 184

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 9/183 (4%)

Query: 99  MEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD 158
            E AA   +  LT   +L     +   +  + + A   VG    Q A+  G      +  
Sbjct: 3   FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK----LIG 58

Query: 159 RAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFL 217
             G+ +  +     GA +V    + + V+ +K +        + ++ VG ++  + L  L
Sbjct: 59  TVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVV-YDSVGRDTWERSLDCL 117

Query: 218 SQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGFWLQKWLSSEKATECRNMIDYLLCLA 276
            + G MV++G  S     V+      K  L +    LQ ++++ +  E     + L  L 
Sbjct: 118 QRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTRE--ELTEASNELFSLI 175

Query: 277 REG 279
             G
Sbjct: 176 ASG 178

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 49.9 bits (118), Expect = 5e-08
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 99  MEYAATIIVNPLTA---LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI 155
              A  I     TA   +  LED         IV  GA+  VG   + +    G   + +
Sbjct: 3   ARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAV 62

Query: 156 IRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLK 215
               +  +  K     LGA  V      E    + L   +   A   + VG    +KVL 
Sbjct: 63  SGRESTHEYLKS----LGASRVLPRD--EFAESRPLEKQVW--AGAIDTVGDKVLAKVLA 114

Query: 216 FLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWL 253
            ++ GG +   G      +  +   FI +++ L+G   
Sbjct: 115 QMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDS 152

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVG---EVYSVGSA 59
            +   ++ ++ V +K+  + IN  D    +    +  + P + G +  G          A
Sbjct: 22  TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFA 81

Query: 60  VTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF 119
                            G    Y          + ++  ++ A    +  +    +  + 
Sbjct: 82  EGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLE- 140

Query: 120 TTLNSGDSIVQNGATSIVGQCIIQI 144
            T  +   I+QN      G+ I+++
Sbjct: 141 ETPGALKDILQNRIQ---GRVIVKL 162

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 27/141 (19%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+         V VK+ A+ +  +D++  EG +PV+P +P + G+EGVG V +VGS VTR
Sbjct: 22  EVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR 81

Query: 63  LAPGDWVIPSPPSSG---------------------------TWQSYVVKDQSVWHKVSK 95
           +  GD V      +                             +  YV+ D +    + K
Sbjct: 82  VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPK 141

Query: 96  DSPMEYAATIIVNPLTALRML 116
           +         + +    L  +
Sbjct: 142 NVKATIHPGKLDDINQILDQM 162

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 13/153 (8%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVR---------PKVPAVGGYEGVGE 52
            E+    +  N+V VK L +P+NPSDIN+I+GVYP +          +  A  G EG+ E
Sbjct: 24  FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFE 83

Query: 53  VYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA 112
           V  VGS V+ L  GDWVIPS  + GTW+++ + +   + K    +P +  A    N LT 
Sbjct: 84  VIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK--LPNPAQSKANGKPNGLTD 141

Query: 113 LRMLED-FTTLNSGDSIVQNG-ATSIVGQCIIQ 143
            + +E  +        + Q+G A S  G+ +I 
Sbjct: 142 AKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 20/185 (10%), Positives = 49/185 (26%), Gaps = 13/185 (7%)

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
           P++    +     T      +   +  G +    G  ++    ++          I +  
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPE-PALGFNCVGGNSASKVLKF 216
           +     +  EK K  GA +    +       + L             CVG     +    
Sbjct: 62  N----PDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALE 117

Query: 217 LSQGGTMVTY-GGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCL 275
               G  V+   G +      +    +    + KG     +         ++ +  ++  
Sbjct: 118 SCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKG-------KDGVPKMVKA 170

Query: 276 AREGK 280
             + K
Sbjct: 171 YLDKK 175

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 46.1 bits (108), Expect = 9e-07
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 14/187 (7%)

Query: 97  SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII 156
           SP+E    I     T          +  G +    G   +    I+      G   I  +
Sbjct: 1   SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCK-AAGAARIIGV 59

Query: 157 RDRAGSDEAKEKLKGLGADEVF--TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVL 214
                + +   K K +GA E     + +  ++ V   ++N             ++    L
Sbjct: 60  D---INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL 116

Query: 215 KFLSQGGTMVTYGGMSKKPITVSTSAFIF-KDLSLKGFWLQKWLSSEKATECRNMIDYLL 273
               +   +    G+      +S +  +     + KG     + S       ++ +  L+
Sbjct: 117 SCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKS-------KDSVPKLV 169

Query: 274 CLAREGK 280
                 K
Sbjct: 170 ADFMAKK 176

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           +++LP  E +E +V +++ A  +N +D     G Y  R   P + G E VG V       
Sbjct: 15  LVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE------ 68

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
                      +    G     V   +     + +  P+            A R L    
Sbjct: 69  ------GRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRAL--LD 120

Query: 121 TLNSGDSIV 129
             ++G  +V
Sbjct: 121 RGHTGKVVV 129

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 9/135 (6%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
            +   ++ E DV V++  + +N  D         +    P V G +  G V  V S   R
Sbjct: 22  TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVV--VSSQHPR 79

Query: 63  LAPGDWVIPSP-----PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLE 117
              GD VI +         G +  Y          + K      A  I +  L       
Sbjct: 80  FREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLERI-AQEISLAELPQALKRI 138

Query: 118 DFTTLNSGDSIVQNG 132
               L  G ++V+  
Sbjct: 139 LRGELR-GRTVVRLA 152

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 18/185 (9%)

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
           P   AA ++   LT    L        G  +   G    +G     I++  G  +  I R
Sbjct: 2   PSHLAAPLLCGGLTVYSPLVRN-GCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISR 59

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFL 217
                ++A +     GAD      +      +          +  + +     + + K +
Sbjct: 60  SSRKREDAMKM----GADHYIATLEEGDW-GEKYFDTFDLIVVCASSLTDIDFNIMPKAM 114

Query: 218 SQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAR 277
             GG +V+   + ++   +S   +  K +S+         S +   E   ++     L  
Sbjct: 115 KVGGRIVSI-SIPEQHEMLSLKPYGLKAVSISYSA---LGSIK---ELNQLLK----LVS 163

Query: 278 EGKLK 282
           E  +K
Sbjct: 164 EKDIK 168

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 9/155 (5%)

Query: 99  MEYAATIIVNPLTA---LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI 155
           ++ A  I     TA   +  LE+         ++  GAT  VG   + +   RG      
Sbjct: 3   LKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEAS 62

Query: 156 IRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLK 215
                G     + L+ LGA EV     +  + ++ L       A   + VGG + + VL 
Sbjct: 63  T----GKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQR--WAAAVDPVGGRTLATVLS 116

Query: 216 FLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 250
            +  GG +   G      +  +   FI + +SL G
Sbjct: 117 RMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLG 151

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 4/158 (2%)

Query: 99  MEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD 158
           ++  A  + +  TA    +++    +G ++V  GA   +G   + IAR  G  ++ +I  
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGVVIARSLGAENVIVIAG 61

Query: 159 RAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFL 217
                +  E++           S  E +     + +           G + A  +  + L
Sbjct: 62  SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELL 121

Query: 218 SQGGTMVTYG-GMSKKPITVSTSAFI-FKDLSLKGFWL 253
            +GG     G  + + P+      ++  K+ + KG W+
Sbjct: 122 RRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWV 159

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 48/174 (27%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+       N++ +K++A  +  +D+  +      +   P V G+EG G V SVG  VT 
Sbjct: 25  EIEVDVPHANEIRIKIIATGVCHTDLYHLF-EGKHKDGFPVVLGHEGAGIVESVGPGVTE 83

Query: 63  LAPGDWVIPSP-----------------------------------------------PS 75
             PG+ VIP                                                   
Sbjct: 84  FQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLG 143

Query: 76  SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIV 129
           + T+  Y V +Q    K+     ++   T  +   +    ++         +++
Sbjct: 144 TSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVL 197

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.4 bits (101), Expect = 8e-06
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 34/151 (22%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP-------KVPAVGGYEGVGEVYS 55
           E+   + K   V +K+ AA +  SD++  +G +           K+P   G+E  G++  
Sbjct: 17  EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEE 76

Query: 56  VGSAVTRLAPGDWVIPSPPS--------------------------SGTWQSY-VVKDQS 88
           VG  V   + GD V  +P                             G +  Y +V    
Sbjct: 77  VGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYK 136

Query: 89  VWHKVSKDSPMEYAATIIVNPLTALRMLEDF 119
             +K+ +  PM      +     A+  LE+F
Sbjct: 137 YMYKLRRVKPMITKTMKLEEANEAIDNLENF 167

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 7/119 (5%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
            L    + E DV V +  + +N  D   I G   +    P + G +  G V +  S   R
Sbjct: 19  TLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRT--SEDPR 76

Query: 63  LAPGDWVIPSP-----PSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRML 116
              G  V+ +         G               + +    +  +           + 
Sbjct: 77  FHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN 135

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 23/184 (12%), Positives = 48/184 (26%), Gaps = 12/184 (6%)

Query: 98  PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 157
           P+E    +     T      +   +    S V  GA ++    ++          I +  
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 158 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFL 217
                +   E  K LGA  V      +       + +        +        + +  L
Sbjct: 62  V----ESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDAL 117

Query: 218 SQGGTMVTYG-GMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLA 276
              G +   G            +  +    ++ G               +  I  L+ L 
Sbjct: 118 GILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSP-------KKFIPELVRLY 170

Query: 277 REGK 280
           ++GK
Sbjct: 171 QQGK 174

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 30/191 (15%), Positives = 69/191 (36%), Gaps = 19/191 (9%)

Query: 101 YAATIIVNPLTALRMLEDFTTLNSG--DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD 158
           +   I +  LT+L  +++   +++G   ++V +GA    G    QI    G   +  I  
Sbjct: 5   FLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG 64

Query: 159 RAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLS 218
                E    L      +     +      +   A      + F+ VGG+ ++ V+  ++
Sbjct: 65  T---QEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMN 121

Query: 219 QGGTMVTYGGMSKKPITVST---------SAFIFKDLSLKGFWLQKWLSSEKATECRNMI 269
           +   ++  G +S+    V           +    ++++ + F +  +       +    I
Sbjct: 122 ENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKD-----KFEPGI 176

Query: 270 DYLLCLAREGK 280
             L    +EGK
Sbjct: 177 LQLSQWFKEGK 187

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 16/188 (8%)

Query: 93  VSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHS 152
           +S++  +E  A +    +TA R ++         + V       +G   +Q+ +     +
Sbjct: 1   ISREKLVE-MAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPAT 59

Query: 153 INIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASK 212
           +  +  +   +E  +  + LGAD V    +  VK V  L                 +   
Sbjct: 60  VIALDVK---EEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDY 116

Query: 213 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYL 272
               L + G ++  G      +   T   I  ++S +G  +  +       E   ++   
Sbjct: 117 TPYLLGRMGRLIIVGYG--GELRFPTIRVISSEVSFEGSLVGNY------VELHELVT-- 166

Query: 273 LCLAREGK 280
             LA +GK
Sbjct: 167 --LALQGK 172

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
           E+     K ++V +KM+A  I  SD + + G       V A   +E  G V S+G  VT 
Sbjct: 25  EVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAG--HEAAGIVESIGEGVTT 82

Query: 63  LAPGDWVIPSPPSSGTWQSYVVKDQSVWH 91
           + PGD VIP               +  + 
Sbjct: 83  VRPGDKVIPLFTPQCGKCRVCKHPEGNFC 111

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 14/160 (8%)

Query: 96  DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI 155
              +   A ++   +T    L  +     G  +   G        +  +           
Sbjct: 3   QEQLAAVAPLLCAGITTYSPLRHWQ-AGPGKKVGVVGIG-----GLGHMGIKLAHAMGAH 56

Query: 156 IRDRAGSDEAKEKLKGLGADEVF--TESQLEVKNVKGLLANLPEPALGFNCVGGNSASKV 213
           +     S+  +E  K LGADEV     +     ++K     L   A   N          
Sbjct: 57  VVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLD------DF 110

Query: 214 LKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWL 253
              L + GTM   G  +    +      I K  ++ G  +
Sbjct: 111 TTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMI 150

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 15/133 (11%)

Query: 1   MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV 60
           +  +    +K  +V ++ L   ++P            R K  AV   + V  V  V S  
Sbjct: 24  LKTVELPPLKNGEVLLEALFLSVDPYMRI-----ASKRLKEGAVMMGQQVARV--VESKN 76

Query: 61  TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 120
           +    G  V+    +   W ++ + D     K+  + P +              M   F 
Sbjct: 77  SAFPAGSIVL----AQSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFI 132

Query: 121 TL----NSGDSIV 129
            +    N G ++V
Sbjct: 133 EMLNGANLGKAVV 145

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 3  ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
          E+    +   +V V++ A  +  +D++   G +PV+PK+P + G+EGVG V  VG  VT 
Sbjct: 17 EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTH 76

Query: 63 LAPGDWVIPSPP 74
          L  GD V     
Sbjct: 77 LKVGDRVGIPWL 88

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT 61
           +E  P +  EN++ V+  A  IN  D     G+YP  P +P+  G E  G V  VGS V 
Sbjct: 18  VEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVK 76

Query: 62  RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEY--AATIIVNPLTALRMLEDF 119
            +  GD V+ +  + G + S           +     ++        +        + + 
Sbjct: 77  HIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE- 135

Query: 120 TTLNSGDSIV 129
           +    G S++
Sbjct: 136 SRATQGSSLL 145

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 23/186 (12%), Positives = 48/186 (25%), Gaps = 46/186 (24%)

Query: 2   IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVG---------- 51
           ++ P  +  E+ V +K+++  I  SD + + G    +  +       G            
Sbjct: 23  MQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDVENL 82

Query: 52  ------------------------EVYSVGSAVTRLAPGDWVIPSPPSSGTWQSYVV--- 84
                                       +     R       +     +G    YV+   
Sbjct: 83  QIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPY 142

Query: 85  KDQSVWHKVSKDSPMEYAATIIVNPL-TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQ 143
            D ++     +D  ME     I   +   +  L+D      G      G      + +I 
Sbjct: 143 ADFNLLKLPDRDKAMEKIN--IAEVVGVQVISLDD---APRGYGEFDAGV---PKKFVID 194

Query: 144 IARHRG 149
             +   
Sbjct: 195 PHKTFS 200

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 3  ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
          E+     K  +V ++++A  + P+DIN  +        V     +E  G V SVG  VT 
Sbjct: 25 EIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLG--HECAGIVESVGPGVTN 82

Query: 63 LAPGDWVIP 71
            PGD VIP
Sbjct: 83 FKPGDKVIP 91

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 3   ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTR 62
            +     K ++V +K+LA+ I  SD + ++ + P +  V    G+E VG V S+G+ VT 
Sbjct: 25  TITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVI--LGHEAVGVVESIGAGVTC 82

Query: 63  LAPGDWVIPSPPSSGTWQSY 82
           + PGD VIP           
Sbjct: 83  VKPGDKVIPLFVPQCGSCRA 102

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 99  MEYAATIIVNPLTA---LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI 155
              A  I     TA   +  LED         IV  GA+  VG   + +    G   + +
Sbjct: 3   ARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAV 62

Query: 156 IRDRAGSDEAKEKLKGLGA 174
               +G +   E LK LGA
Sbjct: 63  ----SGRESTHEYLKSLGA 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.97
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.96
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.95
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.95
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.95
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.95
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.94
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.94
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.94
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.94
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.94
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.94
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.93
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.93
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.93
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.92
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.91
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.91
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.91
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.91
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.91
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.91
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.91
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.9
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.9
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.9
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.66
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.62
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.57
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.18
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.1
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.08
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.07
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.99
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.99
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.98
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.97
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.93
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.92
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.91
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.9
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.89
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.88
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.87
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.87
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.86
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.82
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.81
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.81
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.73
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.72
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.72
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.71
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.7
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.67
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.67
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.67
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.64
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.64
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.63
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.55
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.55
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.55
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.55
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.54
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.53
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.52
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.51
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.49
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.48
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.47
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.46
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.46
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.45
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.43
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.4
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.38
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.38
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.37
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.35
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.35
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.33
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.31
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.27
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.25
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.25
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.22
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.19
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.19
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.13
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.1
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.1
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.07
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.06
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.01
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.0
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.92
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.92
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.9
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.87
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.81
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	96.76
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.67
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.6
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.59
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.59
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.57
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.53
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.53
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.52
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.45
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.44
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.44
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.44
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.41
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.39
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.38
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.33
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.31
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	96.23
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.17
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.14
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.03
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.01
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.98
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	95.95
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.9
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.86
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	95.78
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.77
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	95.69
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.68
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.68
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.67
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.67
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.61
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.57
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.56
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.54
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.51
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.46
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.43
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.39
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.37
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.34
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.29
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.27
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.25
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.14
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.13
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.08
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.04
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.01
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	95.0
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	94.96
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.93
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.92
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.9
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.89
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.83
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.79
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	94.76
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.74
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	94.73
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.67
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	94.59
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	94.56
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.52
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.47
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.42
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.42
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.4
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.3
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.27
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.26
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.25
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.17
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	94.09
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.0
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.0
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.91
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	93.82
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	93.77
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	93.74
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.64
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.62
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	93.62
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.6
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	93.38
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.2
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.19
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.14
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.97
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.73
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	92.71
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.68
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.67
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.65
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.62
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.56
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.52
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.5
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.49
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.49
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.43
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.39
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	92.33
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.26
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	92.25
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.23
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	92.22
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.12
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	92.0
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.97
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.96
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.88
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.87
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.82
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.79
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	91.78
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	91.72
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.66
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.52
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	91.51
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.45
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.19
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	91.17
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.1
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.97
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.73
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	90.7
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.68
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.47
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.44
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.42
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	90.38
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	90.34
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.29
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.18
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	90.16
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.11
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	90.1
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	89.96
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	89.94
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.78
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	89.73
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	89.71
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	89.5
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	89.24
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	88.97
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.9
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.66
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.63
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	88.28
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	88.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.23
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	88.2
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.06
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.0
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.89
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	87.51
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	87.43
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	87.22
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.14
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	86.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	86.94
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	86.85
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	86.52
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	86.48
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	86.43
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	86.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	86.14
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	86.13
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.86
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	85.66
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	85.51
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	85.5
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	85.41
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	85.16
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.02
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	84.85
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	84.79
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.74
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	84.48
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	84.37
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.24
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	84.05
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	83.92
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	83.59
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.46
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	83.31
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	83.22
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	83.17
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	82.95
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	82.81
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	82.79
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.69
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	82.58
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	82.2
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	82.06
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	81.87
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.85
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	81.68
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	81.65
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.33
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	81.32
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	80.94
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	80.71
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	80.38
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	80.25
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	80.01

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-30  Score=195.99  Aligned_cols=129  Identities=19%  Similarity=0.259  Sum_probs=122.2

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCcccce
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQSY   82 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~~~   82 (314)
                      +++.|+|+++||+|||.+++||++|++.+.|.++..+.+|.++|||++|+|+++|+++++|++||||++.....|+|+||
T Consensus        22 ~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~ae~  101 (150)
T d1yb5a1          22 DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEY  101 (150)
T ss_dssp             EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCCSSCSSBSE
T ss_pred             ecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeeccccCcccccccccccccccc
Confidence            57889999999999999999999999999998887778899999999999999999999999999999987767999999


Q ss_pred             EeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           83 VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        83 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                      +++++++++++|+++++++||++++...|+|+++...+..+.|+++||+
T Consensus       102 ~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         102 ALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             EEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999999999999999999998999999999984

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=7.6e-30  Score=200.57  Aligned_cols=178  Identities=23%  Similarity=0.269  Sum_probs=155.0

Q ss_pred             HHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEe
Q 021311          100 EYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFT  179 (314)
Q Consensus       100 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~  179 (314)
                      ++||+++++++|||+++++.+++++|++|||+|++|++|++++|+|+.+|++++++++    ++++.+.++++|++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~----~~~~~~~l~~~Ga~~vi~   76 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG----SDAKREMLSRLGVEYVGD   76 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES----SHHHHHHHHTTCCSEEEE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec----cccccccccccccccccc
Confidence            4799999999999999999899999999999999999999999999999999999995    678889999999999999


Q ss_pred             cChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhhcc
Q 021311          180 ESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLS  258 (314)
Q Consensus       180 ~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (314)
                      +++.+ .+++++.+++.| +|++|||+|++.+..++++|+++|++|.+|..............+.+++++.+++...++.
T Consensus        77 ~~~~~~~~~v~~~t~~~g-~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
T d1pqwa_          77 SRSVDFADEILELTDGYG-VDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLK  155 (183)
T ss_dssp             TTCSTHHHHHHHHTTTCC-EEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHH
T ss_pred             CCccCHHHHHHHHhCCCC-EEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceec
Confidence            88764 478999998887 9999999999988999999999999999986654443333344556899999987765543


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCccc
Q 021311          259 SEKATECRNMIDYLLCLAREGKLKY  283 (314)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~~g~~~~  283 (314)
                       .++...++.++++++++++|+++|
T Consensus       156 -~~~~~~~~~~~~v~~~i~~G~i~p  179 (183)
T d1pqwa_         156 -LQPARYRQLLQHILQHVADGKLEV  179 (183)
T ss_dssp             -HCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             -cCHHHHHHHHHHHHHHHHCCCCce
Confidence             467778899999999999999987

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.96  E-value=1.2e-29  Score=200.01  Aligned_cols=182  Identities=38%  Similarity=0.609  Sum_probs=158.3

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc-CCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN-GATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD  175 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~  175 (314)
                      +|+++||+++++++|||+++.+.++++||++++|+ |++|++|++++|+||.+|+++|++++.++..+++.+.++++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            58999999999999999999998999999988885 77899999999999999999999998776778888899999999


Q ss_pred             EEEecChhh----HHHHHHHhc--CCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEE
Q 021311          176 EVFTESQLE----VKNVKGLLA--NLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLK  249 (314)
Q Consensus       176 ~~~~~~~~~----~~~i~~~~~--~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      +++++++.+    .+.+++.+.  +. ++|++|||+|++.+..++++|+++|++|.+|...+.+.+++...++.+++++.
T Consensus        81 ~vi~~~~~~~~~~~~~v~~~~~~~g~-~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~  159 (189)
T d1gu7a2          81 QVITEDQNNSREFGPTIKEWIKQSGG-EAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSA  159 (189)
T ss_dssp             EEEEHHHHHCGGGHHHHHHHHHHHTC-CEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEE
T ss_pred             EEEeccccchhHHHHHHHHHHhhccC-CceEEEECCCcchhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEE
Confidence            999986532    244555442  33 49999999999999999999999999999998777778888888888999999


Q ss_pred             EEechhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          250 GFWLQKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      |+++..+.. .+++..++.++++++++++|+
T Consensus       160 G~~~~~~~~-~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         160 GFWVTELLK-NNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             ECCHHHHHT-TCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEehHhhh-hCHHHHHHHHHHHHHHHHcCC
Confidence            998877654 467778899999999999986

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.96  E-value=1.9e-30  Score=202.50  Aligned_cols=133  Identities=25%  Similarity=0.269  Sum_probs=119.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP----   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~----   74 (314)
                      ++|+|.|+|+++||+||+.++|||++|++.+.+....  ..+.|.++|||++|+|+++|+++++|++||+|+....    
T Consensus        15 ~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~~~~~~   94 (178)
T d1e3ja1          15 LEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCR   94 (178)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCS
T ss_pred             EEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCCCCEEEECcccccC
Confidence            4789999999999999999999999999988875322  2357899999999999999999999999999986531    


Q ss_pred             -----------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           75 -----------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        75 -----------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                                             .+|+|+||+++++++++++|++++++++|+++.++.|||+++.+ +++++|++|+|+
T Consensus        95 ~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a~~~-~~~~~g~~VlVi  173 (178)
T d1e3ja1          95 RCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEA-ARKKADNTIKVM  173 (178)
T ss_dssp             SSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHHHHH-HHHCCTTCSEEE
T ss_pred             CccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHHHHH-hCCCCCCEEEEE
Confidence                                   25899999999999999999999999999999999999999865 899999999999


Q ss_pred             CCC
Q 021311          132 GAT  134 (314)
Q Consensus       132 g~~  134 (314)
                      |++
T Consensus       174 g~C  176 (178)
T d1e3ja1         174 ISC  176 (178)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-29  Score=193.98  Aligned_cols=171  Identities=23%  Similarity=0.293  Sum_probs=145.3

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +|+++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+|+.+|++++++++    ++++++.++++|+++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~----~~~~~~~~~~~Ga~~   76 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG----TEEGQKIVLQNGAHE   76 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccc----cccccccccccCccc
Confidence            5899999999999999999998899999999999999999999999999999999999984    678899999999999


Q ss_pred             EEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechh
Q 021311          177 VFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK  255 (314)
Q Consensus       177 ~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (314)
                      ++|+++.+ .+++++.+++.+ +|++|||+|++.++.++++++++|+++.+|..  .+.++++..++.+++++.|+++..
T Consensus        77 vi~~~~~~~~~~i~~~t~~~g-~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~--~~~~~~~~~~~~k~~~i~g~~~~~  153 (174)
T d1yb5a2          77 VFNHREVNYIDKIKKYVGEKG-IDIIIEMLANVNLSKDLSLLSHGGRVIVVGSR--GTIEINPRDTMAKESSIIGVTLFS  153 (174)
T ss_dssp             EEETTSTTHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHEEEEEEEEECCCC--SCEEECTHHHHTTTCEEEECCGGG
T ss_pred             ccccccccHHHHhhhhhccCC-ceEEeecccHHHHHHHHhccCCCCEEEEEecC--CCCCCCHHHHHHCCCEEEEEEecC
Confidence            99998764 477999999887 99999999988889999999999999999853  345677778888999999987644


Q ss_pred             hccccCHHHHHHHHHHHHHHHHc
Q 021311          256 WLSSEKATECRNMIDYLLCLARE  278 (314)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~  278 (314)
                      .    .+++.++.++.+.+.++.
T Consensus       154 ~----~~~~~~~~~~~l~~g~~~  172 (174)
T d1yb5a2         154 S----TKEEFQQYAAALQAGMEI  172 (174)
T ss_dssp             C----CHHHHHHHHHHHHHHHHH
T ss_pred             C----CHHHHHHHHHHHHHHHHc
Confidence            2    244444444444444443

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=8e-29  Score=186.82  Aligned_cols=128  Identities=23%  Similarity=0.298  Sum_probs=114.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCccc
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      ++|++.|+|+++||+|||.|+++|++|++++.|.++. +.+|.++|||++|+|+++|+++++|++||+|+......|+|+
T Consensus        17 ~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~a   95 (147)
T d1qora1          17 AVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYS   95 (147)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEESCCSSCCSB
T ss_pred             EEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCC-Ccceeeeccccccceeeeeeecccccccceeeeeccccccce
Confidence            3588999999999999999999999999999998764 478999999999999999999999999999987766679999


Q ss_pred             ceEeeeccceEEcCCCCCHHH--hhcccccHHHHHHHHHHhhcCCCCCEEEE
Q 021311           81 SYVVKDQSVWHKVSKDSPMEY--AATIIVNPLTALRMLEDFTTLNSGDSIVQ  130 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlI  130 (314)
                      ||.+++.+.++++|++++++.  +++++....++++++.+ .++++|++|||
T Consensus        96 e~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1          96 SVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             SEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             eEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            999999999999999998874  45566777888888877 78999999998

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.9e-28  Score=190.71  Aligned_cols=176  Identities=20%  Similarity=0.248  Sum_probs=148.3

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +|+++||+++++++|||+++.+.++++||++|||+|++|++|++++|+|+..|++++++++    ++++++.++++|+++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~----s~~k~~~~~~lGa~~   76 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG----TAQKAQSALKAGAWQ   76 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES----SHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc----chHHHHHHHhcCCeE
Confidence            5899999999999999999999889999999999999999999999999999999999984    899999999999999


Q ss_pred             EEecChhh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceec-ceEEEEEech
Q 021311          177 VFTESQLE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGFWLQ  254 (314)
Q Consensus       177 ~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  254 (314)
                      ++|+++.+ .++++++|++.+ +|+++|++|++.+..++++++++|+++.++.........+...+..+ .+.+...++.
T Consensus        77 vi~~~~~d~~~~v~~~t~g~g-~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~  155 (179)
T d1qora2          77 VINYREEDLVERLKEITGGKK-VRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQ  155 (179)
T ss_dssp             EEETTTSCHHHHHHHHTTTCC-EEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHH
T ss_pred             EEECCCCCHHHHHHHHhCCCC-eEEEEeCccHHHHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEe
Confidence            99998765 478999998887 99999999999999999999999999999977666555544443333 3444433333


Q ss_pred             hhccccCHHHHHHHHHHHHHHHHcC
Q 021311          255 KWLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      .+.  ..++...+.++++++++++|
T Consensus       156 ~~~--~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         156 GYI--TTREELTEASNELFSLIASG  178 (179)
T ss_dssp             HHC--CSHHHHHHHHHHHHHHHHTT
T ss_pred             eec--CCHHHHHHHHHHHHHHHHCc
Confidence            322  34667778889999999988

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=9.6e-29  Score=190.73  Aligned_cols=151  Identities=21%  Similarity=0.269  Sum_probs=128.9

Q ss_pred             CCHHHhhcccccHHHHHHHHH---HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC
Q 021311           97 SPMEYAATIIVNPLTALRMLE---DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG  173 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg  173 (314)
                      +|+++||+++++++|||++++   +..+.++|++|||+|++|++|.+++|+|+.+|++++++++    ++++.+.++++|
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~----s~~k~~~~~~lG   76 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTG----KAAEHDYLRVLG   76 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES----CTTCHHHHHHTT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecC----chHHHHHHHhcc
Confidence            589999999999999997654   4577889999999999999999999999999999999994    678889999999


Q ss_pred             CcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEec
Q 021311          174 ADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       174 ~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      +++++|+++.+.+.+ ..+++.+ +|+|||++|++.+...+++|+++|+++.+|...+...+++...++.|++++.|.+.
T Consensus        77 a~~vi~~~~~~~~~~-~~~~~~g-vD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~  154 (176)
T d1xa0a2          77 AKEVLAREDVMAERI-RPLDKQR-WAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDS  154 (176)
T ss_dssp             CSEEEECC----------CCSCC-EEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCS
T ss_pred             cceeeecchhHHHHH-HHhhccC-cCEEEEcCCchhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeC
Confidence            999999887654434 4555555 99999999999999999999999999999987777788899999999999999743

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.2e-28  Score=190.75  Aligned_cols=169  Identities=22%  Similarity=0.313  Sum_probs=136.2

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +++++||+++++++|||+++.+ ++++||++|||+|++|++|++++|+|+..|++++++++    ++++++.++++|+++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~----~~~~~~~~~~lGa~~   75 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS----RPEKLALPLALGAEE   75 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES----SGGGSHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccchhhhhhhhcccccccccccc----cccccccccccccce
Confidence            5899999999999999999976 89999999999999999999999999999999998884    677888999999999


Q ss_pred             EEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechhh
Q 021311          177 VFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKW  256 (314)
Q Consensus       177 ~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (314)
                      ++|+.+.    ..+.+.+.| +|++|||+| +.++.++++++++|+++.+|...+...++++..++.+++++.|+++..+
T Consensus        76 ~i~~~~~----~~~~~~~~g-~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~~  149 (171)
T d1iz0a2          76 AATYAEV----PERAKAWGG-LDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPL  149 (171)
T ss_dssp             EEEGGGH----HHHHHHTTS-EEEEEECSC-TTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred             eeehhhh----hhhhhcccc-ccccccccc-hhHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcCh
Confidence            9998753    344455665 999999987 5678999999999999999977666677888888999999999988766


Q ss_pred             ccccCHHHHHHHHHHHHHHHHc
Q 021311          257 LSSEKATECRNMIDYLLCLARE  278 (314)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~  278 (314)
                      ..  .+...++.+.++++++.+
T Consensus       150 ~~--~~~~~~~~~~~l~p~i~~  169 (171)
T d1iz0a2         150 LR--EGALVEEALGFLLPRLGR  169 (171)
T ss_dssp             TT--CHHHHHHHHHHHGGGBTT
T ss_pred             hh--hHHHHHHHHHHHHHHHcC
Confidence            43  344455555555554443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.95  E-value=1.7e-27  Score=186.54  Aligned_cols=168  Identities=25%  Similarity=0.353  Sum_probs=144.5

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      +++.++++|||+++.+.+++++|++|||+|++|++|++++|+|+..|+++|++++    ++++.+.++++|+++++++++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~----~~~~~~~~~~~Ga~~vi~~~~   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG----SDEKIAYLKQIGFDAAFNYKT   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHTTCSEEEETTS
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC----CHHHHHHHHhhhhhhhccccc
Confidence            4567789999999999999999999999999999999999999999999999994    788899999999999999877


Q ss_pred             hh-HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCC------CCcccccccceecceEEEEEechh
Q 021311          183 LE-VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK------KPITVSTSAFIFKDLSLKGFWLQK  255 (314)
Q Consensus       183 ~~-~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  255 (314)
                      .. .+.+.+.+.+.| +|+||||+|++.++.++++++++|+++.+|..+.      .+..+.+..++.+++++.|++..+
T Consensus        84 ~~~~~~~~~~~~~~G-vd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~  162 (182)
T d1v3va2          84 VNSLEEALKKASPDG-YDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYR  162 (182)
T ss_dssp             CSCHHHHHHHHCTTC-EEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGG
T ss_pred             ccHHHHHHHHhhcCC-CceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEec
Confidence            64 466777788776 9999999999988999999999999999995432      123345566888999999998766


Q ss_pred             hccccCHHHHHHHHHHHHHHHHcC
Q 021311          256 WLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      +    .++..++.++++++++++|
T Consensus       163 ~----~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         163 W----QGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             C----CHHHHHHHHHHHHHHHHTT
T ss_pred             c----ChHHHHHHHHHHHHHHhCc
Confidence            5    3566778899999999886

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.95  E-value=4.2e-28  Score=187.39  Aligned_cols=128  Identities=23%  Similarity=0.343  Sum_probs=114.3

Q ss_pred             CccCCCCCC-CCCcEEEEEEeecCChhhhhhhccCCCC--CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC---
Q 021311            1 MIELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPV--RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP---   74 (314)
Q Consensus         1 i~~~~~p~~-~~~eV~v~v~~~~i~~~D~~~~~~~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~---   74 (314)
                      +++++.|++ +++||+|||.|++||++|++++.|.++.  .+.+|.++|||++|+|+++|++++++++||||++.+.   
T Consensus        14 i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~c   93 (171)
T d1h2ba1          14 IEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTD   93 (171)
T ss_dssp             EECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCC
T ss_pred             EEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCCCCCEEEEcCccCC
Confidence            468899986 6899999999999999999999887542  3468999999999999999999999999999987542   


Q ss_pred             -----------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEE
Q 021311           75 -----------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQ  130 (314)
Q Consensus        75 -----------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI  130 (314)
                                             .+|+|+||+++++++++++|++++++.++++..++.|||+++.+ +++ .|++|||
T Consensus        94 g~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al~~-~~~-~G~~VlI  170 (171)
T d1h2ba1          94 GTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEK-GEV-LGRAVLI  170 (171)
T ss_dssp             SCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHHHT-TCC-SSEEEEE
T ss_pred             CCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHHHh-cCC-CCCEEEe
Confidence                                   15899999999999999999999999888888899999999965 788 8999998

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.95  E-value=3.2e-27  Score=183.40  Aligned_cols=171  Identities=18%  Similarity=0.191  Sum_probs=148.3

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      ++++.|+.+++++.|||+++.+.++++||++|+|+|+ |++|++++|+|+.+|++++++++.   ++++++.++++|+++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~---~~~k~~~a~~~Ga~~   76 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDI---VESRLELAKQLGATH   76 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCC-CHHHhhhhhcccccccceeeeecc---HHHHHHHHHHcCCeE
Confidence            3567899999999999999999899999999999998 999999999999999999888875   789999999999999


Q ss_pred             EEecChhh-HHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCCC-CCcccccccceecceEEEEEec
Q 021311          177 VFTESQLE-VKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       177 ~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      ++|+++.+ .+++++++++  ++|++|||+|.+. .+.++++++++|+++.+|.... .+.+++...++.+++++.|+++
T Consensus        77 ~i~~~~~~~~~~i~~~t~g--g~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~  154 (174)
T d1f8fa2          77 VINSKTQDPVAAIKEITDG--GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVE  154 (174)
T ss_dssp             EEETTTSCHHHHHHHHTTS--CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSG
T ss_pred             EEeCCCcCHHHHHHHHcCC--CCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEe
Confidence            99988764 4778888887  5999999999865 4889999999999999996543 4567888888999999999877


Q ss_pred             hhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          254 QKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      +++.       .+++++++++++++|+
T Consensus       155 g~~~-------~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         155 GSGS-------PKKFIPELVRLYQQGK  174 (174)
T ss_dssp             GGSC-------HHHHHHHHHHHHHTTS
T ss_pred             cCCC-------hHHHHHHHHHHHHcCC
Confidence            6541       2466889999999985

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.95  E-value=1e-27  Score=189.83  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=119.1

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      |+|++.|+|+++||+|||.++|||++|++.+.+.... ..+|.++|||++|+|+++|+++++|++||||+.....     
T Consensus        23 i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~-~~~p~i~GhE~~G~v~~vG~~v~~~~~GdrV~~~~~~~cg~c  101 (199)
T d1cdoa1          23 IEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGEC  101 (199)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSS
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccc-cccccccccccceEEEEEcCCCceecCCCEEEEeeecccccc
Confidence            4788999999999999999999999999999986543 3689999999999999999999999999999886431     


Q ss_pred             ------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           76 ------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        76 ------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                                .|+|+||+++++++++++|++++++++|++.+++.|++
T Consensus       102 ~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~  181 (199)
T d1cdoa1         102 RFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVN  181 (199)
T ss_dssp             HHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHH
T ss_pred             ccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHH
Confidence                                                      28999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCEEEEc
Q 021311          114 RMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~  131 (314)
                      +++......+.|++|||+
T Consensus       182 ~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         182 DAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             HHHHHHHTTCCSEEEEEC
T ss_pred             HHHHHhCCCCCCCEEEeC
Confidence            999998889999999984

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.1e-27  Score=186.12  Aligned_cols=129  Identities=26%  Similarity=0.336  Sum_probs=115.0

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++|+|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++++++++||||.....      
T Consensus        20 l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~   99 (175)
T d1llua1          20 IEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGC   99 (175)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSS
T ss_pred             EEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccccccCCEEEeccccccCCc
Confidence            46889999999999999999999999999999988766678999999999999999999999999999986421      


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                                           .+|+|+||+.+++++++++|++++++.++++..++.|+++.++. . ..+|++|||+
T Consensus       100 ~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~~~-g-~~~G~~VLVl  175 (175)
T d1llua1         100 CEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQMRA-G-QIEGRIVLEM  175 (175)
T ss_dssp             SHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHHHT-T-CCSSEEEEEC
T ss_pred             cccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHHHh-C-CCCCCEEEeC
Confidence                                 15799999999999999999999999888888899999988743 4 4479999985

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=5.8e-27  Score=181.58  Aligned_cols=168  Identities=19%  Similarity=0.200  Sum_probs=144.8

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +++.+||.+++++.|||+++.+ ++++++++|+|+|++|++|++++|+++..|+..+++++.   ++++++.++++|+++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~-~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~---~~~~~~~~~~~Ga~~   76 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADY   76 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccceeeeeeccccccccccccccc---chhhHHHHHHcCCce
Confidence            5789999999999999999966 899999999999988999999999999999865555553   789999999999999


Q ss_pred             EEecChhh-HHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEech
Q 021311          177 VFTESQLE-VKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQ  254 (314)
Q Consensus       177 ~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
                      ++++++.+ .+++++.+.+.+ +|++|||+|++. ++.++++++++|+++.+|.. ..+.+++...++.+++++.|++.+
T Consensus        77 ~i~~~~~~~~~~~~~~~~~~~-~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~k~i~i~Gs~~~  154 (170)
T d1jvba2          77 VINASMQDPLAEIRRITESKG-VDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF-GADLHYHAPLITLSEIQFVGSLVG  154 (170)
T ss_dssp             EEETTTSCHHHHHHHHTTTSC-EEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS-CCCCCCCHHHHHHHTCEEEECCSC
T ss_pred             eeccCCcCHHHHHHHHhhccc-chhhhcccccchHHHhhhhhcccCCEEEEeccc-cCccccCHHHHHhCCcEEEEEecC
Confidence            99987654 477888888766 999999999865 48899999999999999954 455778888889999999998765


Q ss_pred             hhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          255 KWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      ++          ++++++++++++||
T Consensus       155 ~~----------~d~~~~l~lv~~GK  170 (170)
T d1jvba2         155 NQ----------SDFLGIMRLAEAGK  170 (170)
T ss_dssp             CH----------HHHHHHHHHHHTTS
T ss_pred             CH----------HHHHHHHHHHHcCC
Confidence            42          55788889999886

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=2.4e-27  Score=183.75  Aligned_cols=129  Identities=23%  Similarity=0.340  Sum_probs=111.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      +++++.|+|+++||+|||.++|||++|++++.+.......+|.++|||++|+|+++|++++++++||+|.....      
T Consensus        15 i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~~~   94 (171)
T d1rjwa1          15 IKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGH   94 (171)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSC
T ss_pred             EEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceeeeEEeeccccccccc
Confidence            46899999999999999999999999999998876666688999999999999999999999999999976431      


Q ss_pred             ---------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCC
Q 021311           75 ---------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA  133 (314)
Q Consensus        75 ---------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~  133 (314)
                                           .+|+|+||+++++++++++|++++++.|++ . ...++++.+.+ +.+ +|++|||+|.
T Consensus        95 ~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~l-~-~~~~~~~~~~~-~~~-~G~tVlViG~  170 (171)
T d1rjwa1          95 CDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPL-E-KINEVFDRMLK-GQI-NGRVVLTLED  170 (171)
T ss_dssp             SHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEEG-G-GHHHHHHHHHT-TCC-SSEEEEECCC
T ss_pred             cccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHHH-H-HHHHHHHHHHh-cCC-CCCEEEEeCC
Confidence                                 158999999999999999999999876654 3 46677877755 556 5999999985

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.6e-27  Score=174.85  Aligned_cols=117  Identities=24%  Similarity=0.308  Sum_probs=107.4

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCccc
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      ++|++.|+|+++||+||+.++|||++|+++..|.++..+.+|+++|||++|+|           +||+|+++.. .|+|+
T Consensus        15 ~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vGd~V~~~~~-~G~~a   82 (131)
T d1iz0a1          15 LVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EGRRYAALVP-QGGLA   82 (131)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TTEEEEEECS-SCCSB
T ss_pred             EEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------ccceEEEEec-cCccc
Confidence            36889999999999999999999999999999998877789999999999999           3999998876 59999


Q ss_pred             ceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           81 SYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                      ||++++++.++++|+++++++||++++.+.|||+++.+.+  +.|++||++
T Consensus        83 ey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          83 ERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             SEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             eeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999999999999999999999997755  459999864

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-27  Score=185.41  Aligned_cols=129  Identities=26%  Similarity=0.247  Sum_probs=110.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCC--CCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYP--VRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP----   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~--~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~----   74 (314)
                      ++|+|.|+|+++||+|||.++|||++|++++.+...  ...++|.++|||++|+|+++|+++++|++||+|+..+.    
T Consensus        21 l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg  100 (185)
T d1pl8a1          21 LENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRE  100 (185)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSS
T ss_pred             EEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeeecccccceecceeccc
Confidence            468999999999999999999999999999876432  12357899999999999999999999999999986531    


Q ss_pred             -----------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEc
Q 021311           75 -----------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus        75 -----------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~  131 (314)
                                             .+|+|+||++++.++++++|++++++++++.+  +.+|++++.+ .++++|++||| 
T Consensus       101 ~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~p--l~~a~~a~~~-~~~~~G~~VlI-  176 (185)
T d1pl8a1         101 NDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP--LEKALEAFET-FKKGLGLKIML-  176 (185)
T ss_dssp             CCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEE--GGGHHHHHHH-HHTTCCSEEEE-
T ss_pred             cchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHH--HHHHHHHHHH-hCCCCCCEEEE-
Confidence                                   26889999999999999999999999988765  4567777755 77999999998 


Q ss_pred             CC
Q 021311          132 GA  133 (314)
Q Consensus       132 g~  133 (314)
                      |+
T Consensus       177 g~  178 (185)
T d1pl8a1         177 KC  178 (185)
T ss_dssp             EC
T ss_pred             Ee
Confidence            44

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=3.4e-27  Score=178.75  Aligned_cols=128  Identities=21%  Similarity=0.145  Sum_probs=114.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----C
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----S   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~   75 (314)
                      +++++.|+|+++||+|||.++|||++|+..+.|.++..+..|.++|+|++|+|++  +.+..+++||+|.....     .
T Consensus        20 i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~~~~~   97 (152)
T d1xa0a1          20 VQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRFREGDEVIATGYEIGVTH   97 (152)
T ss_dssp             EEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSCCTTCEEEEESTTBTTTB
T ss_pred             EEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCccccCCEEEEecCcccccc
Confidence            3688999999999999999999999999999998877678899999999999998  66788999999987643     2


Q ss_pred             CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcC
Q 021311           76 SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNG  132 (314)
Q Consensus        76 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g  132 (314)
                      +|+|+||+++++++++++|++++. +||+++++.+|||.++....+++ |++||++|
T Consensus        98 ~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          98 FGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             CCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            689999999999999999999984 68889999999999998878886 99999986

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=3.3e-26  Score=177.46  Aligned_cols=166  Identities=20%  Similarity=0.247  Sum_probs=144.6

Q ss_pred             CHHHhhcccccHHHHHHHHHHhh-cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFT-TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      .+.++|+++++++|||+++.+.. .++||++|+|+|+ |++|++++|+++.+|+.++++++.   ++++++.++++|+++
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~---~~~k~~~~~~~ga~~   80 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGADH   80 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCSE
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccc---hhHHHHHHhhcccce
Confidence            36788999999999999998855 4899999999998 999999999999999988777764   788999999999999


Q ss_pred             EEecChhhHHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEechh
Q 021311          177 VFTESQLEVKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK  255 (314)
Q Consensus       177 ~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (314)
                      ++++.+++.+.+.+.+.+.| +|++|||+|+.. ++.++++++++|+++.+|..  .+.+++...++.+++++.|++.++
T Consensus        81 ~i~~~~~~~~~~~~~~~~~g-~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~--~~~~~~~~~l~~k~~~i~Gs~~~~  157 (172)
T d1h2ba2          81 VVDARRDPVKQVMELTRGRG-VNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG--GELRFPTIRVISSEVSFEGSLVGN  157 (172)
T ss_dssp             EEETTSCHHHHHHHHTTTCC-EEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS--SCCCCCHHHHHHTTCEEEECCSCC
T ss_pred             eecCcccHHHHHHHhhCCCC-ceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc--ccccCCHHHHHhCCcEEEEEEecC
Confidence            99999888888888888876 999999999975 69999999999999999953  346677788889999999997754


Q ss_pred             hccccCHHHHHHHHHHHHHHHHcCC
Q 021311          256 WLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      +          .+++++++++++|+
T Consensus       158 ~----------~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         158 Y----------VELHELVTLALQGK  172 (172)
T ss_dssp             H----------HHHHHHHHHHHTTS
T ss_pred             H----------HHHHHHHHHHHcCC
Confidence            3          45788899999886

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3e-27  Score=185.16  Aligned_cols=128  Identities=22%  Similarity=0.238  Sum_probs=110.6

Q ss_pred             cCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCC-CCCCCCCEEeeCCC-------
Q 021311            3 ELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAV-TRLAPGDWVIPSPP-------   74 (314)
Q Consensus         3 ~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v-~~~~~Gd~V~~~~~-------   74 (314)
                      ++++++++++||+|||.|+|||++|++.+.|.++. .++|+++|||++|+|+++|+++ +.+++||||...+.       
T Consensus        25 ~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~-~~~P~i~GHE~~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~~c  103 (192)
T d1piwa1          25 KYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLEC  103 (192)
T ss_dssp             EECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCS
T ss_pred             eccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCC-CCCCcCcccccccchhhcccccccccCCCCeeeEeeeccCCCCc
Confidence            45667789999999999999999999999988764 3789999999999999999998 56999999964320       


Q ss_pred             ---------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCE
Q 021311           75 ---------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDS  127 (314)
Q Consensus        75 ---------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  127 (314)
                                                 .+|+|+||+++++++++++|++++++.|+.+...+.|||+++.+ ++++++++
T Consensus       104 ~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l~~-~~vk~g~~  182 (192)
T d1piwa1         104 DRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEK-GDVRYRFT  182 (192)
T ss_dssp             HHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHHHH-TCCSSEEE
T ss_pred             hhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHHHH-hCCCCCCE
Confidence                                       15899999999999999999999998877666557799999965 99999999


Q ss_pred             EEEcC
Q 021311          128 IVQNG  132 (314)
Q Consensus       128 vlI~g  132 (314)
                      |+|..
T Consensus       183 Vvv~~  187 (192)
T d1piwa1         183 LVGYD  187 (192)
T ss_dssp             EECCH
T ss_pred             EEEEC
Confidence            99864

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=8.1e-27  Score=183.92  Aligned_cols=130  Identities=25%  Similarity=0.269  Sum_probs=117.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      ++|+|.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++|+.+++||+|......     
T Consensus        21 i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~vG~~V~~~~~GdrV~v~~~~~cg~c   99 (197)
T d2fzwa1          21 IEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGEC   99 (197)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCS
T ss_pred             EEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEeecCCceecCCCCEEEEccccccccc
Confidence            4788999999999999999999999999999997654 3689999999999999999999999999999875321     


Q ss_pred             ------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           76 ------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        76 ------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                                .|+|+||+++++.+++++|++++++++|.+.+++.|++
T Consensus       100 ~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~  179 (197)
T d2fzwa1         100 KFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEIN  179 (197)
T ss_dssp             HHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHH
T ss_pred             cccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHH
Confidence                                                      28999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCEEEEc
Q 021311          114 RMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~  131 (314)
                      .++.++..-+.+++|||+
T Consensus       180 ~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         180 KAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             HHHHHHHHTCCSEEEEEC
T ss_pred             HHHHhccCCCcCCEEEeC
Confidence            999776667788999884

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.94  E-value=1.9e-26  Score=181.19  Aligned_cols=128  Identities=27%  Similarity=0.357  Sum_probs=111.5

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      ++++|.|+|+++||+||+.++|||++|++++.|.++.  ++|.++|||++|+|+++|+++++|++||+|+..+..     
T Consensus        18 l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~i~GHE~~G~V~~vG~~v~~~~vGDrVv~~~~~Cg~C~   95 (194)
T d1f8fa1          18 LQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCT   95 (194)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCCCCSSSH
T ss_pred             EEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc--cCCcccccceEEEeeecCccceeEccCceeeeecccccCCh
Confidence            4688999999999999999999999999999998764  689999999999999999999999999999763210     


Q ss_pred             -------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHH
Q 021311           76 -------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA  112 (314)
Q Consensus        76 -------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  112 (314)
                                                                 .|+|+||.++++.+++++|++++++++          
T Consensus        96 ~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~i~~~~~----------  165 (194)
T d1f8fa1          96 QCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQL----------  165 (194)
T ss_dssp             HHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTTCCGGGG----------
T ss_pred             hhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCCCCCcccE----------
Confidence                                                       268999999999999999999886554          


Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                                     +++.|+ |++|++++|+++.+|+..++.+
T Consensus       166 ---------------~~i~g~-g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         166 ---------------VKFYAF-DEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             ---------------EEEEEG-GGHHHHHHHHHHTSCSEEEEEC
T ss_pred             ---------------EEEeCc-HHHHHHHHHHHHHcCCCEEEEe
Confidence                           334455 9999999999999999887765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=1.2e-25  Score=173.87  Aligned_cols=169  Identities=20%  Similarity=0.135  Sum_probs=137.5

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +++++|+++++++.|||+++.+ +++++|++|+|+|+ |++|++++|+|+.+|++.+++++.   ++++++.++++|+++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~-a~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~---~~~r~~~a~~lGa~~   75 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAEL-ADIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGS---RPICVEAAKFYGATD   75 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHH-TTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECC---CHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHH-hCCCCCCEEEEEcC-Ccchhhhhhhhhcccccccccccc---hhhhHHHHHhhCccc
Confidence            5789999999999999999866 99999999999998 999999999999999965555553   789999999999999


Q ss_pred             EEecChhh-HHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCCCC-Cccccc--ccceecceEEEEE
Q 021311          177 VFTESQLE-VKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMSKK-PITVST--SAFIFKDLSLKGF  251 (314)
Q Consensus       177 ~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~--~~~~~~~~~~~~~  251 (314)
                      ++++++.. .+.+++++++.| +|++|||+|++. ++.++++++++|+++.+|..... ..+++.  .....+++++.+.
T Consensus        76 ~i~~~~~~~~~~v~~~t~g~G-~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~  154 (174)
T d1jqba2          76 ILNYKNGHIEDQVMKLTNGKG-VDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGG  154 (174)
T ss_dssp             EECGGGSCHHHHHHHHTTTSC-EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEB
T ss_pred             cccccchhHHHHHHHHhhccC-cceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEe
Confidence            99998764 477999999887 999999999865 58999999999999999965432 233332  2234577888887


Q ss_pred             echhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          252 WLQKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      .+...         +..++.+.++++.|+
T Consensus       155 ~~~~~---------r~~~e~l~~li~~gk  174 (174)
T d1jqba2         155 LCPGG---------RLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCCCH---------HHHHHHHHHHHHTTS
T ss_pred             cCCCC---------cccHHHHHHHHHcCC
Confidence            65321         244677888888775

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=1.7e-25  Score=172.91  Aligned_cols=169  Identities=20%  Similarity=0.240  Sum_probs=140.1

Q ss_pred             CHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV  177 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~  177 (314)
                      +++.||.+.|.+.|+|+++.+.+++++|++|+|+|+ |++|++++|+++.+|++.+++++.   +++|++.++++|++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~---~~~r~~~a~~~Ga~~~   77 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDI---NGEKFPKAKALGATDC   77 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCSEE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeecc---chHHHHHHHHhCCCcc
Confidence            578999999999999999988899999999999998 999999999999999988888875   7889999999999999


Q ss_pred             EecChh--hHHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccC-CEEEEEcCCCCCCcccccccceecceEEEEEec
Q 021311          178 FTESQL--EVKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQG-GTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       178 ~~~~~~--~~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      +++...  ..+.+...+.+.| +|++|||+|.+. ++.++++++++ |+++.+|.. ..+.++++..++ .+.++.|+++
T Consensus        78 i~~~~~~~~~~~~~~~~~~~G-~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~-~~~~~i~~~~~~-~~k~i~Gs~~  154 (174)
T d1e3ia2          78 LNPRELDKPVQDVITELTAGG-VDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK-VDEMTIPTVDVI-LGRSINGTFF  154 (174)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSC-BSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS-SSEEEEEHHHHH-TTCEEEECSG
T ss_pred             cCCccchhhhhhhHhhhhcCC-CcEEEEecccchHHHHHHHHhhcCCeEEEecCCC-CCccccchHHHh-ccCEEEEEEe
Confidence            987643  4456666666665 999999999975 48999999996 999999954 455566655554 3678888877


Q ss_pred             hhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          254 QKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      +++.       ..+++.++++++++||
T Consensus       155 Gs~~-------~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         155 GGWK-------SVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             GGCC-------HHHHHHHHHHHHHTTS
T ss_pred             eCCC-------hHHHHHHHHHHHHCcC
Confidence            6641       2366788889988885

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.2e-26  Score=179.74  Aligned_cols=174  Identities=18%  Similarity=0.187  Sum_probs=132.0

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCC--CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSG--DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA  174 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~  174 (314)
                      +|+...| ++++++|||+++++.+++++|  ++|||+||+|++|++++|+|+.+|+++++++..  +.+.+....+++|+
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~--~~e~~~~l~~~~ga   78 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG--TQEKCLFLTSELGF   78 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES--SHHHHHHHHHHSCC
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccc--hHHHHhhhhhcccc
Confidence            4556654 567899999999999999987  889999999999999999999999987765543  13444556678999


Q ss_pred             cEEEecChhhH-HHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCccc---------ccccceec
Q 021311          175 DEVFTESQLEV-KNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV---------STSAFIFK  244 (314)
Q Consensus       175 ~~~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~---------~~~~~~~~  244 (314)
                      ++++|+.+++. +.+++.+. .| +|++|||+|++.+...+++++++|+++.+|..++.....         ....+..+
T Consensus        79 d~vi~~~~~~~~~~~~~~~~-~G-vDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k  156 (187)
T d1vj1a2          79 DAAVNYKTGNVAEQLREACP-GG-VDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKER  156 (187)
T ss_dssp             SEEEETTSSCHHHHHHHHCT-TC-EEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHT
T ss_pred             eEEeeccchhHHHHHHHHhc-cC-ceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhc
Confidence            99999998765 55666664 44 999999999999999999999999999999654421111         11224568


Q ss_pred             ceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          245 DLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      ++++.++.+.++.     +.+.+.++++.+++.+|+
T Consensus       157 ~i~~~g~~~~~~~-----~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         157 NITRERFTVLNYK-----DKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             TCEEEECCGGGCG-----GGHHHHHHHHHHHHHHTS
T ss_pred             ceEEEEeEecchH-----HHHHHHHHHHHHHHHCcC
Confidence            9999998766542     345677899999999885

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.5e-25  Score=172.84  Aligned_cols=163  Identities=20%  Similarity=0.225  Sum_probs=136.2

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +++++||.++++++|||+++++ +++++|++|+|.|+ |++|++++|+|+.+|++++++.    .++++++.++++|+++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~-~~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~----~~~~~~~~a~~~Ga~~   74 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQ-TNARPGQWVAISGI-GGLGHVAVQYARAMGLHVAAID----IDDAKLELARKLGASL   74 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEeec-cccHHHHHHHHHHcCCccceec----chhhHHHhhhccCccc
Confidence            5789999999999999999976 89999999999998 9999999999999999888877    3789999999999999


Q ss_pred             EEecChhh-HHHHHHHhcCCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEech
Q 021311          177 VFTESQLE-VKNVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQ  254 (314)
Q Consensus       177 ~~~~~~~~-~~~i~~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
                      ++|+.+.+ .+.+++.+.+   .|.+++++++ +.++.++++++++|+++.+|.. ..+.+++...++.+++++.|++.+
T Consensus        75 ~i~~~~~~~~~~~~~~~~g---~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~k~~~i~Gs~~~  150 (166)
T d1llua2          75 TVNARQEDPVEAIQRDIGG---AHGVLVTAVSNSAFGQAIGMARRGGTIALVGLP-PGDFPTPIFDVVLKGLHIAGSIVG  150 (166)
T ss_dssp             EEETTTSCHHHHHHHHHSS---EEEEEECCSCHHHHHHHHTTEEEEEEEEECCCC-SSEEEEEHHHHHHTTCEEEECCSC
T ss_pred             cccccchhHHHHHHHhhcC---CcccccccccchHHHHHHHHhcCCcEEEEEEec-CCCccCCHHHHHhCCcEEEEEeec
Confidence            99988764 4566665544   5555555555 5568999999999999999954 456778888899999999998764


Q ss_pred             hhccccCHHHHHHHHHHHHHHHHcC
Q 021311          255 KWLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      +.          ++++++++++++|
T Consensus       151 ~~----------~d~~e~l~l~~~G  165 (166)
T d1llua2         151 TR----------ADLQEALDFAGEG  165 (166)
T ss_dssp             CH----------HHHHHHHHHHHTT
T ss_pred             CH----------HHHHHHHHHHHCc
Confidence            32          4577888998887

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=1.7e-26  Score=183.43  Aligned_cols=127  Identities=25%  Similarity=0.313  Sum_probs=113.2

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      ++|+|.|+|+++||||||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++|+++++||+|++....     
T Consensus        23 i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~v~GHE~~G~V~~vG~~V~~~~~GdrV~~~~~~~c~~c  100 (202)
T d1e3ia1          23 IEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA--LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRC  100 (202)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC--CSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSS
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc--ccccccccccceEEeeecCCceeccCCCEEEEEeecccccc
Confidence            4788999999999999999999999999999998764  679999999999999999999999999999875421     


Q ss_pred             ----------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccH
Q 021311           76 ----------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNP  109 (314)
Q Consensus        76 ----------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  109 (314)
                                                                    .|+|+||+++++.+++++|++++++.+++..+++
T Consensus       101 ~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~  180 (202)
T d1e3ia1         101 KLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF  180 (202)
T ss_dssp             HHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEG
T ss_pred             ccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhEEECCCCCCHHHHHHHHHHH
Confidence                                                          2899999999999999999999999999988888


Q ss_pred             HHHHHHHHHhhcCCCCCEEEEcC
Q 021311          110 LTALRMLEDFTTLNSGDSIVQNG  132 (314)
Q Consensus       110 ~ta~~~l~~~~~~~~~~~vlI~g  132 (314)
                      .+++.++..   +++|++|.|+.
T Consensus       181 ~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         181 ESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             GGHHHHHHH---HHTTCCSEEEE
T ss_pred             HHHHHHHHh---CCCCCEEEEEE
Confidence            999888854   57899887753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3.4e-25  Score=173.33  Aligned_cols=166  Identities=19%  Similarity=0.311  Sum_probs=134.9

Q ss_pred             CHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +++.+|.+.+++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|++ ++++.    .++++++.++++|+++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~----~~~~~~~~a~~lGa~~   76 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIA----GSPNRLKLAEEIGADL   76 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEE----SCHHHHHHHHHTTCSE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECC-Cccchhheecccccccccccccc----cccccccccccccceE
Confidence            467788999999999999999889999999999998 99999999999999995 55554    3889999999999999


Q ss_pred             EEecChhhH----HHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCC-CCCccccc-ccceecceEEE
Q 021311          177 VFTESQLEV----KNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMS-KKPITVST-SAFIFKDLSLK  249 (314)
Q Consensus       177 ~~~~~~~~~----~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~-~~~~~~~~~~~  249 (314)
                      ++++.+.+.    +.+++++++.| +|+||||+|++. ++.++++++++|+++.+|... ..+.++.+ ..++.+++++.
T Consensus        77 vi~~~~~~~~~~~~~i~~~~~~~g-~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~  155 (182)
T d1vj0a2          77 TLNRRETSVEERRKAIMDITHGRG-ADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFK  155 (182)
T ss_dssp             EEETTTSCHHHHHHHHHHHTTTSC-EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEE
T ss_pred             EEeccccchHHHHHHHHHhhCCCC-ceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEE
Confidence            999876543    45777788877 999999999865 589999999999999999543 34455544 34678999999


Q ss_pred             EEechhhccccCHHHHHHHHHHHHHHHHcC
Q 021311          250 GFWLQKWLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      |++.+..          +.+++++++++++
T Consensus       156 G~~~~~~----------~~~~~~~~~i~~~  175 (182)
T d1vj0a2         156 GIWVSDT----------SHFVKTVSITSRN  175 (182)
T ss_dssp             ECCCCCH----------HHHHHHHHHHHTC
T ss_pred             EEEeCCH----------HHHHHHHHHHHHC
Confidence            9877532          3455666666654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-25  Score=173.57  Aligned_cols=164  Identities=20%  Similarity=0.203  Sum_probs=135.2

Q ss_pred             CHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV  177 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~  177 (314)
                      +.+.||.+.+++.|+|+++++ +++++|++|+|+|+ |++|++++|+|+.+|++++++.+    ++++++.++++|++++
T Consensus         2 p~e~AApl~cag~Ta~~al~~-~~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~----~~~k~~~a~~lGa~~~   75 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISR----SSRKREDAMKMGADHY   75 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEES----SSTTHHHHHHHTCSEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-hCcCCCCEEEEECC-CCcchhHHHHhhhcccccccccc----chhHHHHhhccCCcEE
Confidence            457789999999999999976 89999999999998 99999999999999999988774    6778899999999999


Q ss_pred             EecChhhHHHHHHHhcCCCCCcEEEecCCCcc---HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEech
Q 021311          178 FTESQLEVKNVKGLLANLPEPALGFNCVGGNS---ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQ  254 (314)
Q Consensus       178 ~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~---~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
                      +++.++.  ...+...+  ++|+++||++...   +..++++++++|+++.+|.. ..+.+++...++.+++++.|++.+
T Consensus        76 i~~~~~~--~~~~~~~~--~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~k~~~i~Gs~~g  150 (168)
T d1piwa2          76 IATLEEG--DWGEKYFD--TFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP-EQHEMLSLKPYGLKAVSISYSALG  150 (168)
T ss_dssp             EEGGGTS--CHHHHSCS--CEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC-CSSCCEEECGGGCBSCEEEECCCC
T ss_pred             eeccchH--HHHHhhhc--ccceEEEEecCCccchHHHHHHHhhccceEEEeccc-cccccccHHHHHhCCcEEEEEeeC
Confidence            9886542  12222222  4999999988643   57899999999999999954 445567778888999999998764


Q ss_pred             hhccccCHHHHHHHHHHHHHHHHcCCcc
Q 021311          255 KWLSSEKATECRNMIDYLLCLAREGKLK  282 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~  282 (314)
                      +.          ++++++++++++|+++
T Consensus       151 ~~----------~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         151 SI----------KELNQLLKLVSEKDIK  168 (168)
T ss_dssp             CH----------HHHHHHHHHHHHTTCC
T ss_pred             CH----------HHHHHHHHHHHhCCCC
Confidence            42          4578899999999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.1e-25  Score=170.55  Aligned_cols=167  Identities=18%  Similarity=0.213  Sum_probs=137.1

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +|+++||++. ++.+||+++.+ +++++|++|+|+|+ |++|++++|+|+.+|++.+++++.   ++++++.++++|+++
T Consensus         1 vS~e~Aal~e-pla~a~~a~~~-~~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~---~~~rl~~a~~~Ga~~   74 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHACRR-GGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDL---SATRLSKAKEIGADL   74 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHH-HHHHHHHHHHH-hCCCCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccC---CHHHHHHHHHhCCcc
Confidence            5789999775 78999999976 89999999999998 999999999999999966666653   899999999999999


Q ss_pred             EEecChhhHHH---HHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEe
Q 021311          177 VFTESQLEVKN---VKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFW  252 (314)
Q Consensus       177 ~~~~~~~~~~~---i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  252 (314)
                      +++..+.+...   ..+.+.+.+ +|++|||+|++.. +.++++++++|+++++|.. ..+.++++..++.|++++.|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~g~g-~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~-~~~~~~~~~~~~~k~l~i~Gs~  152 (171)
T d1pl8a2          75 VLQISKESPQEIARKVEGQLGCK-PEVTIECTGAEASIQAGIYATRSGGTLVLVGLG-SEMTTVPLLHAAIREVDIKGVF  152 (171)
T ss_dssp             EEECSSCCHHHHHHHHHHHHTSC-CSEEEECSCCHHHHHHHHHHSCTTCEEEECSCC-CSCCCCCHHHHHHTTCEEEECC
T ss_pred             cccccccccccccccccccCCCC-ceEEEeccCCchhHHHHHHHhcCCCEEEEEecC-CCCCccCHHHHHHCCcEEEEEe
Confidence            99887665432   222334444 9999999999764 8999999999999999954 4556788889999999999975


Q ss_pred             chhhccccCHHHHHHHHHHHHHHHHcCCcc
Q 021311          253 LQKWLSSEKATECRNMIDYLLCLAREGKLK  282 (314)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~  282 (314)
                      .+.           +.++++++++++|++.
T Consensus       153 ~~~-----------~~~~~al~li~~gkid  171 (171)
T d1pl8a2         153 RYC-----------NTWPVAISMLASKSVN  171 (171)
T ss_dssp             SCS-----------SCHHHHHHHHHTTSCC
T ss_pred             CCH-----------hHHHHHHHHHHcCCCC
Confidence            421           2367889999999873

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.93  E-value=7.6e-25  Score=170.58  Aligned_cols=171  Identities=15%  Similarity=0.165  Sum_probs=137.7

Q ss_pred             CHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV  177 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~  177 (314)
                      ++++||.+++++.|+|+++.+.++++||++|||+|+ |++|++++|+++.+|++++++++.   ++++++.++++|++++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~---~~~k~~~ak~lGa~~~   77 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDI---NKDKFARAKEFGATEC   77 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECS---CGGGHHHHHHHTCSEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcc---cHHHHHHHHHhCCcEE
Confidence            578999999999999999988899999999999999 889999999999999988777764   7888999999999999


Q ss_pred             EecCh--hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCC-CCcccccccceecceEEEEEec
Q 021311          178 FTESQ--LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       178 ~~~~~--~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      +++.+  ++..+..+.+.+.| +|++|||+|.+.+ ..+..+++++|+++.++.... .....+....+.+++++.|+++
T Consensus        78 i~~~~~~~~~~~~~~~~~~~g-~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~  156 (176)
T d2fzwa2          78 INPQDFSKPIQEVLIEMTDGG-VDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAF  156 (176)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSC-BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSG
T ss_pred             EeCCchhhHHHHHHHHHcCCC-CcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEee
Confidence            99865  34555555555555 9999999998765 788888999988887764443 3333444445568899999887


Q ss_pred             hhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          254 QKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      +++.       .++++.++++++++||
T Consensus       157 G~~~-------~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         157 GGWK-------SVESVPKLVSEYMSKK  176 (176)
T ss_dssp             GGCC-------HHHHHHHHHHHHHTTS
T ss_pred             eCCc-------HHHHHHHHHHHHHcCC
Confidence            6541       2466888999999886

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=3.6e-25  Score=171.13  Aligned_cols=166  Identities=22%  Similarity=0.261  Sum_probs=139.4

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +|+++||+++++++|||+++++ .+++||++|||+|+ |++|++++++++..|++++++.    .++++++.++++|+++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~-~~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~----~~~~r~~~~k~~Ga~~   74 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVD----IGDEKLELAKELGADL   74 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEEC----SCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEeec-ccchhhhhHHHhcCCCeEeccC----CCHHHhhhhhhcCcce
Confidence            5899999999999999999976 89999999999987 9999999999999999987776    3789999999999999


Q ss_pred             EEecChhhH-HHHHHHhcCCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEech
Q 021311          177 VFTESQLEV-KNVKGLLANLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQ  254 (314)
Q Consensus       177 ~~~~~~~~~-~~i~~~~~~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
                      ++++.+.+. +.+++.+.+   .|.+++++++ +.+..++++++++|+++.+|. ...+.+++...++.+++++.|++..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~-~~~~~~~~~~~~~~~~~~i~gs~~~  150 (168)
T d1rjwa2          75 VVNPLKEDAAKFMKEKVGG---VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGL-PPEEMPIPIFDTVLNGIKIIGSIVG  150 (168)
T ss_dssp             EECTTTSCHHHHHHHHHSS---EEEEEESSCCHHHHHHHHHHEEEEEEEEECCC-CSSEEEEEHHHHHHTTCEEEECCSC
T ss_pred             ecccccchhhhhcccccCC---CceEEeecCCHHHHHHHHHHhccCCceEeccc-ccCCCCCCHHHHHHCCcEEEEEeeC
Confidence            999987654 557777765   4444455555 456999999999999999984 4556677778888999999998654


Q ss_pred             hhccccCHHHHHHHHHHHHHHHHcCCcc
Q 021311          255 KWLSSEKATECRNMIDYLLCLAREGKLK  282 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~  282 (314)
                      .          +++++++++++++|+++
T Consensus       151 ~----------~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         151 T----------RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             C----------HHHHHHHHHHHHTTSCC
T ss_pred             C----------HHHHHHHHHHHHhCCCC
Confidence            3          25578899999999875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.93  E-value=9e-25  Score=169.08  Aligned_cols=168  Identities=17%  Similarity=0.118  Sum_probs=135.3

Q ss_pred             HHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311           99 MEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus        99 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      +.+||.+.|++.|+|+++.+.+++++|++|+|+|+ |++|++++|+|+.+|++.+++++.   ++++++.++++|+++++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~---~~~kl~~a~~lGa~~~i   77 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGT---HKDKFPKAIELGATECL   77 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECS---CGGGHHHHHHTTCSEEE
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCC---hHHHHHHHHHcCCcEEE
Confidence            45689999999999999988899999999999998 999999999999999987777764   78999999999999999


Q ss_pred             ecChhh--HHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhccc-CCEEEEEcCCCC-CCcccccccceecceEEEEEec
Q 021311          179 TESQLE--VKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQ-GGTMVTYGGMSK-KPITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       179 ~~~~~~--~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~-~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      |+.+.+  .+++...+.+.| +|++|||+|.... ..++..+++ +|+++.+|.... .++++++..+ .+++++.|+++
T Consensus        78 ~~~~~d~~~~~~~~~~~~~G-~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~-~~~~~i~Gs~~  155 (174)
T d1p0fa2          78 NPKDYDKPIYEVICEKTNGG-VDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL-LTGRSLKGSVF  155 (174)
T ss_dssp             CGGGCSSCHHHHHHHHTTSC-BSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHH-HTTCEEEECSG
T ss_pred             cCCCchhHHHHHHHHhcCCC-CcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHH-hCCCEEEEEEe
Confidence            986543  566666666655 9999999999765 778887766 599999996543 3344444444 46889999887


Q ss_pred             hhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          254 QKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      +.+..        +++.++++++++|+
T Consensus       156 G~~~~--------~d~~~lidl~~~gK  174 (174)
T d1p0fa2         156 GGFKG--------EEVSRLVDDYMKKK  174 (174)
T ss_dssp             GGCCG--------GGHHHHHHHHHTTS
T ss_pred             CCCCH--------HHHHHHHHHHHcCC
Confidence            65411        35778888988885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7.7e-25  Score=168.96  Aligned_cols=165  Identities=19%  Similarity=0.223  Sum_probs=131.3

Q ss_pred             CCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc
Q 021311           96 DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD  175 (314)
Q Consensus        96 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~  175 (314)
                      ..++..+|.+.|+..|+|+++++ +++++|++|+|+|+ |++|++++|+|+.+|++++++.+    ++++++.++++|++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~~-~~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~----~~~~~~~a~~lGad   76 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTT----SEAKREAAKALGAD   76 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----SGGGHHHHHHHTCS
T ss_pred             cccHHHHHHHHhHHHHHHHHHHH-hCCCCCCEEEEecc-chHHHHHHHHhhcccccchhhcc----chhHHHHHhccCCc
Confidence            34677888899999999999965 99999999999998 99999999999999999997774    66778899999999


Q ss_pred             EEEecChhhHHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEech
Q 021311          176 EVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQ  254 (314)
Q Consensus       176 ~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
                      +++++.+.....    ...+ ++|++|||+|.+. +..++++++++|+++.+|...+.....+...++.+++++.|++.+
T Consensus        77 ~~i~~~~~~~~~----~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~  151 (168)
T d1uufa2          77 EVVNSRNADEMA----AHLK-SFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG  151 (168)
T ss_dssp             EEEETTCHHHHH----TTTT-CEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSC
T ss_pred             EEEECchhhHHH----HhcC-CCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeec
Confidence            999988754221    1223 4999999999864 699999999999999999665555566777777899999998764


Q ss_pred             hhccccCHHHHHHHHHHHHHHHHcCCc
Q 021311          255 KWLSSEKATECRNMIDYLLCLAREGKL  281 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~g~~  281 (314)
                      ..          +++++++++++++++
T Consensus       152 ~~----------~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         152 GI----------PETQEMLDFCAEHGI  168 (168)
T ss_dssp             CH----------HHHHHHHHHHHHHTC
T ss_pred             CH----------HHHHHHHHHHHHcCC
Confidence            32          456778888887654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.9e-26  Score=175.04  Aligned_cols=171  Identities=20%  Similarity=0.239  Sum_probs=139.0

Q ss_pred             CCHHHhhcccccHHHHHHHHH---HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC
Q 021311           97 SPMEYAATIIVNPLTALRMLE---DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG  173 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg  173 (314)
                      +|+.+||+++++++|||++++   +.....++++|||+|++|++|++++|+||.+|+++|++++    ++++.+.++++|
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~----~~~k~~~~~~lG   76 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG----RESTHEYLKSLG   76 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES----CGGGHHHHHHHT
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEec----chhHHHHHHhhc
Confidence            588999999999999998764   3233445679999999999999999999999999999995    678888999999


Q ss_pred             CcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEec
Q 021311          174 ADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       174 ~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      +++++|+++.+..  +.+ ... .+|.++|++|++.+..++++++++|+++.+|...+...+++...++.+++++.|++.
T Consensus        77 ad~vi~~~~~~~~--~~l-~~~-~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~  152 (177)
T d1o89a2          77 ASRVLPRDEFAES--RPL-EKQ-VWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDS  152 (177)
T ss_dssp             EEEEEEGGGSSSC--CSS-CCC-CEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCS
T ss_pred             cccccccccHHHH--HHH-Hhh-cCCeeEEEcchHHHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEec
Confidence            9999999865421  111 222 489999999999999999999999999999988777777888888899999999754


Q ss_pred             hhhccccCHHHHHHHHHHHHHHHHcC
Q 021311          254 QKWLSSEKATECRNMIDYLLCLAREG  279 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~g  279 (314)
                      ..    .+++...+.++++.+.+.++
T Consensus       153 ~~----~~~~~~~~~~~~L~~~l~~~  174 (177)
T d1o89a2         153 VM----TPPERRAQAWQRLVADLPES  174 (177)
T ss_dssp             SS----CCHHHHHHHHHHHHHHSCHH
T ss_pred             cc----CCHHHHHHHHHHHHHhcccc
Confidence            22    34666667777777665543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.92  E-value=3.4e-24  Score=165.80  Aligned_cols=163  Identities=18%  Similarity=0.240  Sum_probs=131.7

Q ss_pred             CCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE
Q 021311           97 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE  176 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~  176 (314)
                      +|+++||++. ++++||+++.+ +++++|++|+|+|+ |++|++++|+|+.+|++++++.    .++++++.++++|++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~~~-~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~----~~~~r~~~a~~~ga~~   73 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHACRR-AGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTA----RSPRRLEVAKNCGADV   73 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHHHH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHH-HHHHHHHHHHH-hCCCCCCEEEEEcc-cccchhhHhhHhhhcccccccc----hHHHHHHHHHHcCCcE
Confidence            5789999875 78899999976 89999999999986 9999999999999999988776    3899999999999998


Q ss_pred             EEecChh--hH----HHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEE
Q 021311          177 VFTESQL--EV----KNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLK  249 (314)
Q Consensus       177 ~~~~~~~--~~----~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  249 (314)
                      +++.+..  ..    +.+++.. +. ++|++|||+|++. .+.++++++++|+++.+|... .+.++++..++.+++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~-g~-g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~-~~~~~~~~~~~~k~i~i~  150 (170)
T d1e3ja2          74 TLVVDPAKEEESSIIERIRSAI-GD-LPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS-QMVTVPLVNACAREIDIK  150 (170)
T ss_dssp             EEECCTTTSCHHHHHHHHHHHS-SS-CCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS-SCCCCCHHHHHTTTCEEE
T ss_pred             EEeccccccccchhhhhhhccc-cc-CCceeeecCCChHHHHHHHHHHhcCCceEEEecCC-CCCCcCHHHHHHCCCEEE
Confidence            8765432  22    2333333 33 4999999999976 589999999999999999544 456678888899999999


Q ss_pred             EEechhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          250 GFWLQKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      |++.+.           +.++++++++++|+
T Consensus       151 gs~~~~-----------~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         151 SVFRYC-----------NDYPIALEMVASGR  170 (170)
T ss_dssp             ECCSCS-----------SCHHHHHHHHHTTS
T ss_pred             EEECCH-----------HHHHHHHHHHHcCC
Confidence            975421           23567788888885

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.92  E-value=5.9e-24  Score=165.28  Aligned_cols=171  Identities=14%  Similarity=0.172  Sum_probs=140.2

Q ss_pred             CHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV  177 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~  177 (314)
                      ++++||.+.|++.|+|+++.+.+++++|++|+|+|+ |++|++++++++..|+..+++++.   ++++++.++++|++++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~---~~~rl~~a~~~GAd~~   77 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDL---NPDKFEKAKVFGATDF   77 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCCEE
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEec-CCccchHHHHHHHHhhchheeecc---hHHHHHHHHHcCCcEE
Confidence            578999999999999999988899999999999998 999999999999999987777764   7889999999999999


Q ss_pred             EecChh--hHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEech
Q 021311          178 FTESQL--EVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQ  254 (314)
Q Consensus       178 ~~~~~~--~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
                      +|+.+.  ..+++++.+.+.| +|++||++|.... ..++.+++++|.++.++.........+....+.+++++.|++++
T Consensus        78 in~~~~~~~~~~~~~~~~~~G-~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G  156 (175)
T d1cdoa2          78 VNPNDHSEPISQVLSKMTNGG-VDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFG  156 (175)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSC-BSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGG
T ss_pred             EcCCCcchhHHHHHHhhccCC-cceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEe
Confidence            998754  3467777777776 9999999999665 77788877776555555455555555666666788999998876


Q ss_pred             hhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          255 KWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      .+       ..++++.++++++++|+
T Consensus       157 ~~-------~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         157 GF-------KGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             GC-------CHHHHHHHHHHHHHTTS
T ss_pred             CC-------cHHHHHHHHHHHHHcCC
Confidence            54       13467888999999885

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.91  E-value=4.1e-27  Score=182.00  Aligned_cols=107  Identities=27%  Similarity=0.274  Sum_probs=91.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++|+|.|+|+++||+||+.++|||++|++.+.+.... ..+|+++|||++|+|+++|+++++|++||||+..+.      
T Consensus        14 i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~-~~~P~i~GhE~~G~V~~vG~~v~~~~vGdrV~v~~~~~cg~c   92 (177)
T d1jqba1          14 WIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALG-DRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRS   92 (177)
T ss_dssp             EEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTC-CCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCCCCSSS
T ss_pred             EEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCC-CCCCccCcceeeEEeeecccccceecCCCcEEEeeeeccccc
Confidence            4689999999999999999999999999887654433 267999999999999999999999999999986432      


Q ss_pred             -----------------------CCCcccceEeeec--cceEEcCCCCCHHHhhccccc
Q 021311           75 -----------------------SSGTWQSYVVKDQ--SVWHKVSKDSPMEYAATIIVN  108 (314)
Q Consensus        75 -----------------------~~g~~~~~~~~~~--~~~~~~p~~~~~~~aa~~~~~  108 (314)
                                             .+|+|+||++++.  .+++++|+++++++++.....
T Consensus        93 ~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~  151 (177)
T d1jqba1          93 LEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYH  151 (177)
T ss_dssp             HHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEE
T ss_pred             cchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHH
Confidence                                   1699999999986  469999999999887765543

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.7e-25  Score=172.48  Aligned_cols=124  Identities=23%  Similarity=0.284  Sum_probs=106.1

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCC-----CCCCCCEEeeCCC-
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVT-----RLAPGDWVIPSPP-   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~-----~~~~Gd~V~~~~~-   74 (314)
                      ++|++.|+|+++||+|||.++|||++|++++.|.++.. ++|+++|||++|+|+++|++|.     .+++||+|+..+. 
T Consensus        19 i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~-~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~   97 (184)
T d1vj0a1          19 YKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRV-PLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGI   97 (184)
T ss_dssp             EEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTC-CSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEE
T ss_pred             EEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCcc-ccccccceeeeeeeeEEeccccccccccccceeeeEecccc
Confidence            46889999999999999999999999999999987643 6899999999999999999986     4689999986421 


Q ss_pred             ----------------------------------CCCcccceEeee-ccceEEcCCCCCHHHhhcccccHHHHHHHHHHh
Q 021311           75 ----------------------------------SSGTWQSYVVKD-QSVWHKVSKDSPMEYAATIIVNPLTALRMLEDF  119 (314)
Q Consensus        75 ----------------------------------~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~  119 (314)
                                                        .+|+|+||++++ +.+++++|++++.+.      ++.+|++++.+ 
T Consensus        98 ~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~~------pl~~A~~a~~~-  170 (184)
T d1vj0a1          98 TCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL------PLKEANKALEL-  170 (184)
T ss_dssp             CCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEEE------EGGGHHHHHHH-
T ss_pred             ccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHHH------HHHHHHHHHHH-
Confidence                                              168999999996 579999999998653      35678888855 


Q ss_pred             hcCCCCCEEEEcC
Q 021311          120 TTLNSGDSIVQNG  132 (314)
Q Consensus       120 ~~~~~~~~vlI~g  132 (314)
                      +++++|++|||+.
T Consensus       171 ~~~~~G~~VlI~~  183 (184)
T d1vj0a1         171 MESREALKVILYP  183 (184)
T ss_dssp             HHHTSCSCEEEEC
T ss_pred             hCCCcCCEEEEee
Confidence            8999999999974

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.91  E-value=1.2e-23  Score=163.52  Aligned_cols=171  Identities=15%  Similarity=0.154  Sum_probs=136.7

Q ss_pred             CHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV  177 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~  177 (314)
                      ++++||.+++++.|+|+++.+.+++++|++|+|+|+ |++|++++++++..|+..+++++.   ++++++.++++|++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~---~~~k~~~a~~~Ga~~~   77 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDI---NKDKFAKAKEVGATEC   77 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCSEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecC---cHHHHHHHHHhCCeeE
Confidence            578999999999999999998899999999999999 889999999999999877666664   7888999999999999


Q ss_pred             EecCh--hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC-CcccccccceecceEEEEEec
Q 021311          178 FTESQ--LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       178 ~~~~~--~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      +++.+  +..+...+.+.+.| +|++|||+|.+.. ..++.+++++|+.+.++..... .........+.+++++.|+++
T Consensus        78 i~~~~~~~~~~~~~~~~~~~G-~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~  156 (176)
T d2jhfa2          78 VNPQDYKKPIQEVLTEMSNGG-VDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIF  156 (176)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSC-BSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSG
T ss_pred             EecCCchhHHHHHHHHHhcCC-CCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEE
Confidence            98754  34566666666655 9999999999765 7888999887655555544433 333344456679999999987


Q ss_pred             hhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          254 QKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                      +++       ..++++.++++++++||
T Consensus       157 G~~-------~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         157 GGF-------KSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             GGC-------CHHHHHHHHHHHHHTTS
T ss_pred             eCC-------CHHHHHHHHHHHHHCcC
Confidence            654       12456788889998885

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=8.3e-25  Score=170.12  Aligned_cols=128  Identities=24%  Similarity=0.310  Sum_probs=104.3

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCC-------CCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCC
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPV-------RPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSP   73 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~-------~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~   73 (314)
                      ++|++.|+|+++||+|||.++|||++|++++.|.++.       ..++|+++|||++|+|+++|+.+.+|++||+|++.+
T Consensus        15 i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~   94 (177)
T d1jvba1          15 LQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNP   94 (177)
T ss_dssp             EEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccCccccccCceEeeee
Confidence            4689999999999999999999999999999987532       236899999999999999999999999999998754


Q ss_pred             CC--------------------------CCcccceEeeeccc-eEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCC
Q 021311           74 PS--------------------------SGTWQSYVVKDQSV-WHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGD  126 (314)
Q Consensus        74 ~~--------------------------~g~~~~~~~~~~~~-~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  126 (314)
                      ..                          +|+|+||++++..+ ++++|+..+.+.++....++.++++++.. .++ .|+
T Consensus        95 ~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~~~-~~~-~G~  172 (177)
T d1jvba1          95 WQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLEN-FKA-IGR  172 (177)
T ss_dssp             EECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHHHHHHHHT-TCC-CSE
T ss_pred             ccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHHHHHHHHh-hcc-cCC
Confidence            21                          48999999998655 55655555444444445688899999866 665 589


Q ss_pred             EEEE
Q 021311          127 SIVQ  130 (314)
Q Consensus       127 ~vlI  130 (314)
                      +|||
T Consensus       173 ~VlI  176 (177)
T d1jvba1         173 QVLI  176 (177)
T ss_dssp             EEEE
T ss_pred             ceEC
Confidence            9987

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=8e-28  Score=189.87  Aligned_cols=141  Identities=21%  Similarity=0.173  Sum_probs=114.6

Q ss_pred             ccCCCCCC-------CCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC
Q 021311            2 IELPPVEV-------KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP   74 (314)
Q Consensus         2 ~~~~~p~~-------~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~   74 (314)
                      +|+|.|++       .++||+|||.+++||++|++++.|.++.  .+|+++|||++|+|+++|++|++|++||||...+.
T Consensus        16 ~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~--~~P~v~GHE~~G~Vv~vG~~V~~~~vGdrV~v~~~   93 (201)
T d1kola1          16 QKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFN   93 (201)
T ss_dssp             EEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSE
T ss_pred             EEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc--ccceeccceeeeeeeccccccccccccceeEEeee
Confidence            56677754       5699999999999999999999998764  67999999999999999999999999999975421


Q ss_pred             ------------------------------------CCCcccceEeeec--cceEEcCCCCCHHHhhcccccHHHHHHHH
Q 021311           75 ------------------------------------SSGTWQSYVVKDQ--SVWHKVSKDSPMEYAATIIVNPLTALRML  116 (314)
Q Consensus        75 ------------------------------------~~g~~~~~~~~~~--~~~~~~p~~~~~~~aa~~~~~~~ta~~~l  116 (314)
                                                          .+|+|+||+++|.  .+++++|++.+..+++++..++.++++++
T Consensus        94 ~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~  173 (201)
T d1kola1          94 VACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISL  173 (201)
T ss_dssp             ECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECG
T ss_pred             eeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence                                                1589999999984  47999999877777776666666777766


Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI  150 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~  150 (314)
                      .+ ++.+.+.    +|+ |++|++++|+||.+||
T Consensus       174 ~~-~~~~~g~----~g~-G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         174 DD-APRGYGE----FDA-GVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             GG-HHHHHHH----HHH-TCSCEEEECTTCSSCC
T ss_pred             Hh-CCCCCeE----Eee-CHHHHHHHHHHHHcCC
Confidence            44 4444442    466 9999999999998886

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.91  E-value=9.4e-24  Score=163.50  Aligned_cols=168  Identities=18%  Similarity=0.143  Sum_probs=134.3

Q ss_pred             CHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE
Q 021311           98 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV  177 (314)
Q Consensus        98 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~  177 (314)
                      +++.||.++|.+.|+|+++.+.+++++|++|+|+|+ |++|++++|+++.+|+..+++++.   ++++++.++++|++++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~---~~~kl~~Ak~~GA~~~   78 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDL---NKDKFEKAMAVGATEC   78 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHHTCSEE
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecC---cHHHHHHHHhcCCcEE
Confidence            589999999999999999988899999999999998 999999999999999877777764   7999999999999999


Q ss_pred             EecChhh--HHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccC-CEEEEEcCCCCC-CcccccccceecceEEEEEe
Q 021311          178 FTESQLE--VKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQG-GTMVTYGGMSKK-PITVSTSAFIFKDLSLKGFW  252 (314)
Q Consensus       178 ~~~~~~~--~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~  252 (314)
                      +|+.+.+  .+.+.+.+.+.| +|+++|++|.... ..++..+.++ |+++.+|..... ...+++..++ ++.++.|++
T Consensus        79 in~~~~~~~~~~~~~~~~g~G-~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~  156 (176)
T d1d1ta2          79 ISPKDSTKPISEVLSEMTGNN-VGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCV  156 (176)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSC-CCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECS
T ss_pred             ECccccchHHHHHHHHhcccc-ceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEE
Confidence            9987643  466777788776 9999999999764 6777777554 999999965443 3444444444 688999988


Q ss_pred             chhhccccCHHHHHHHHHHHHHHHHc
Q 021311          253 LQKWLSSEKATECRNMIDYLLCLARE  278 (314)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (314)
                      ++...       .++++.++++++.+
T Consensus       157 ~G~~~-------~~~dip~li~~~~~  175 (176)
T d1d1ta2         157 FGGLK-------SRDDVPKLVTEFLA  175 (176)
T ss_dssp             GGGCC-------HHHHHHHHHHHHTT
T ss_pred             EeCCC-------cHHHHHHHHHHHhC
Confidence            76541       23556666666543

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.2e-25  Score=163.37  Aligned_cols=114  Identities=15%  Similarity=0.110  Sum_probs=102.6

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----C
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----S   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~   75 (314)
                      +++++.|+|+++||+|||.|+|||+.|.....|.++..+.+|.++|+|++|+|+++|.  ..+++||+|+....     .
T Consensus        17 i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~~g~~v~~~~~~~g~~~   94 (146)
T d1o89a1          17 VQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFHAGQEVLLTGWGVGENH   94 (146)
T ss_dssp             EEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCCTTCEEEEECTTBTTTB
T ss_pred             EEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCccceeeEEeecccceecC
Confidence            4689999999999999999999999999999998887778899999999999999765  57999999987543     2


Q ss_pred             CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHH
Q 021311           76 SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRML  116 (314)
Q Consensus        76 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l  116 (314)
                      +|+|+||+++++++++++|+++|+++||++++++.||+..+
T Consensus        95 ~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          95 WGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             CCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             CCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999998888886554

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=4.1e-27  Score=180.20  Aligned_cols=133  Identities=18%  Similarity=0.158  Sum_probs=117.9

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC-----C
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP-----S   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-----~   75 (314)
                      +++++.|+|+++||+|||.|+|||++|+++..|.++..+..|.++|+|++|+|++  +.+..+++||+|.....     .
T Consensus        20 ~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~g~~~   97 (162)
T d1tt7a1          20 VKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSYELGVSR   97 (162)
T ss_dssp             EEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTTCCTTCEEEEESTTBTTTB
T ss_pred             EEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccccccceeeEeeeccceecc
Confidence            4678999999999999999999999999999998876667889999999999998  67788999999987653     2


Q ss_pred             CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcH
Q 021311           76 SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSI  136 (314)
Q Consensus        76 ~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~  136 (314)
                      .|+|+||++++++.++++|+++++++||+++..++|||+++.. .+...+++|||+|++|.
T Consensus        98 ~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~-~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1          98 DGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLE-ETPGALKDILQNRIQGR  157 (162)
T ss_dssp             CCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECST-THHHHHHHTTTTCCSSE
T ss_pred             ccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCcce
Confidence            6899999999999999999999999999999999999988755 45666788999988664

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.91  E-value=1.3e-24  Score=171.77  Aligned_cols=126  Identities=29%  Similarity=0.360  Sum_probs=106.7

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      |+|++.|+|+++||+|||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++++++++||+|++....     
T Consensus        23 i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~vG~~v~~~~vGdrV~v~~~~~c~~c  100 (198)
T d2jhfa1          23 IEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKC  100 (198)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCS
T ss_pred             EEEEECCCCCCCEEEEEEEEEecccccceeecCCccc--ccceecccceeEEEEecCccccCcCCCCEEEEeeeeccccc
Confidence            4788999999999999999999999999999998775  689999999999999999999999999999775421     


Q ss_pred             ------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           76 ------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        76 ------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                                .|+|+||+++++.+++++|+.++++.+++...++.+..
T Consensus       101 ~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~  180 (198)
T d2jhfa1         101 RVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKIN  180 (198)
T ss_dssp             HHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHH
T ss_pred             ccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhh
Confidence                                                      28999999999999999999998887766655544433


Q ss_pred             HHHHHhhcCCCCCEEEEc
Q 021311          114 RMLEDFTTLNSGDSIVQN  131 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~  131 (314)
                      .+.   ..+++|++|.|.
T Consensus       181 ~g~---~~l~~G~~VaVi  195 (198)
T d2jhfa1         181 EGF---DLLRSGESIRTI  195 (198)
T ss_dssp             HHH---HHHHTTCCSEEE
T ss_pred             hCC---ceeeCCCEEEEE
Confidence            332   336788888775

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.4e-24  Score=164.75  Aligned_cols=118  Identities=20%  Similarity=0.233  Sum_probs=98.4

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCC------
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPP------   74 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~------   74 (314)
                      ++|++.|+|+++||+|||.++|||++|++.+.|.++.. .+|.++|||++|+|+++|++|+++++||+|...+.      
T Consensus        15 i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~-~~P~i~GhE~~G~V~~vG~~V~~~~vGdrV~v~~~~~~cg~   93 (179)
T d1uufa1          15 PMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT-VYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKH   93 (179)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCC-CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSS
T ss_pred             EEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccc-cccccccccccccchhhccccccCCCCCEEEEcccccccCc
Confidence            47899999999999999999999999999999976643 78999999999999999999999999999965320      


Q ss_pred             -----------------------------CCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHHhhcCC
Q 021311           75 -----------------------------SSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLN  123 (314)
Q Consensus        75 -----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~  123 (314)
                                                   ..|+|+||+++++++++++|++....  +. ..++.++++++.+ +.++
T Consensus        94 C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~--~~-a~~l~~a~~a~~~-a~v~  167 (179)
T d1uufa1          94 CEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEM--IR-ADQINEAYERMLR-GDVK  167 (179)
T ss_dssp             SHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEE--EC-GGGHHHHHHHHHT-TCSS
T ss_pred             cccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcCh--hH-hchhHHHHHHHHH-hCcc
Confidence                                         14899999999999999999765332  22 2257789988866 5554

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.90  E-value=8.2e-27  Score=181.66  Aligned_cols=140  Identities=36%  Similarity=0.573  Sum_probs=120.0

Q ss_pred             ccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCC---------CCCccCCcceEEEEEEecCCCCCCCCCCEEeeC
Q 021311            2 IELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRP---------KVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPS   72 (314)
Q Consensus         2 ~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~---------~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~   72 (314)
                      .++|.|+|+++||+|||.+++||++|+++++|.++...         ..|.++|+|++|+|+++|..+..++.||+|...
T Consensus        24 ~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~  103 (175)
T d1gu7a1          24 FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPS  103 (175)
T ss_dssp             EEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEEEES
T ss_pred             EECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccccccccccccccccccccceecc
Confidence            36788899999999999999999999999988754321         467889999999999999999999999999988


Q ss_pred             CCCCCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHHHHHHH-hhcCCCCCEEEEcCC-CcHHHHHHHH
Q 021311           73 PPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLED-FTTLNSGDSIVQNGA-TSIVGQCIIQ  143 (314)
Q Consensus        73 ~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~g~-~g~~G~~a~~  143 (314)
                      ....|+|+||+++++++++++|++++.+.+  +...++|||+++.. .+++++|++|||+|+ +|++|++++|
T Consensus       104 ~~~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         104 HVNFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             SSCCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             ccccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            877899999999999999999998754444  45568899998864 357999999999984 5779987765

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.90  E-value=9.7e-25  Score=172.05  Aligned_cols=126  Identities=25%  Similarity=0.374  Sum_probs=106.4

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCC-----
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPS-----   75 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-----   75 (314)
                      |+|+|.|+|+++||+|||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|+++.++++||+|...+..     
T Consensus        23 i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~--~~P~i~GHE~~G~Vv~~G~~v~~~~~GdrV~~~~~~~Cg~c  100 (198)
T d1p0fa1          23 LETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS--KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSC  100 (198)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSS
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc--ccccccceeeeeeeeecCcccccCcCCCEEEEEeecccccc
Confidence            4789999999999999999999999999999998765  689999999999999999999999999999875421     


Q ss_pred             ------------------------------------------CCcccceEeeeccceEEcCCCCCHHHhhcccccHHHHH
Q 021311           76 ------------------------------------------SGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTAL  113 (314)
Q Consensus        76 ------------------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  113 (314)
                                                                .|+|+||+.+++..++++|++++++.++...+...+  
T Consensus       101 ~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~~--  178 (198)
T d1p0fa1         101 RACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQ--  178 (198)
T ss_dssp             HHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGGG--
T ss_pred             ccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCCCCCHHHHHHhhcchhh--
Confidence                                                      378999999999999999999998877766544332  


Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQ  139 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~  139 (314)
                              +.+++.|||.|+ |++|+
T Consensus       179 --------v~~~~~vlv~G~-G~iGl  195 (198)
T d1p0fa1         179 --------INKAFELLSSGQ-GVRSI  195 (198)
T ss_dssp             --------HHHHHHHTTTSS-CSEEE
T ss_pred             --------cCCCCEEEEECC-CcceE
Confidence                    334455778887 76664

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=4.2e-24  Score=163.37  Aligned_cols=140  Identities=24%  Similarity=0.298  Sum_probs=117.9

Q ss_pred             cHHHHH---HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh
Q 021311          108 NPLTAL---RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE  184 (314)
Q Consensus       108 ~~~ta~---~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~  184 (314)
                      +++|||   +++.+....+++++|||+|++|++|.+++|+|+.+|++++++++    ++++.++++++|+++++++++..
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~----s~~k~~~~~~lGad~vi~~~~~~   79 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTG----NREAADYLKQLGASEVISREDVY   79 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEES----SSSTHHHHHHHTCSEEEEHHHHC
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEec----CHHHHHHHHhhcccceEeccchh
Confidence            355666   45556556778889999999999999999999999999999994    67788999999999999886543


Q ss_pred             HHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccccccceecceEEEEEec
Q 021311          185 VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWL  253 (314)
Q Consensus       185 ~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (314)
                      .+.+ ..+.+.+ +|++||++|++.++.++++|+++|+++.+|...+.+.+++...++.+++++.|+..
T Consensus        80 ~~~~-~~~~~~g-vd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~  146 (167)
T d1tt7a2          80 DGTL-KALSKQQ-WQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDS  146 (167)
T ss_dssp             SSCC-CSSCCCC-EEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCS
T ss_pred             chhh-hcccCCC-ceEEEecCcHHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEec
Confidence            3333 3344444 99999999999999999999999999999988888888888899999999999754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.5e-22  Score=159.04  Aligned_cols=165  Identities=12%  Similarity=0.022  Sum_probs=133.1

Q ss_pred             HHhhcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEe
Q 021311          100 EYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFT  179 (314)
Q Consensus       100 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~  179 (314)
                      ++.+++...+.|||+++.+ +++++|++|||+|+ |++|++++++|+..|+.++++++.   ++++++.++++|++++++
T Consensus         2 ~d~~~l~d~~~ta~~a~~~-a~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~---~~~rl~~a~~~Ga~~~~~   76 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDL---NPARLAHAKAQGFEIADL   76 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTTCEEEET
T ss_pred             chHHhcccHHHHHHHHHHH-hCCCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecc---cchhhHhhhhccccEEEe
Confidence            5677888899999999865 99999999999998 999999999999999987777765   889999999999999999


Q ss_pred             cChhh-HHHHHHHhcCCCCCcEEEecCCCc----------------cHHHHHHhcccCCEEEEEcCCCCC----------
Q 021311          180 ESQLE-VKNVKGLLANLPEPALGFNCVGGN----------------SASKVLKFLSQGGTMVTYGGMSKK----------  232 (314)
Q Consensus       180 ~~~~~-~~~i~~~~~~~g~~d~v~d~~g~~----------------~~~~~~~~l~~~G~~v~~g~~~~~----------  232 (314)
                      +.+.+ .+++.+++++.| +|++|||+|.+                .++.++++++++|+++.+|.....          
T Consensus        77 ~~~~~~~~~i~~~t~g~g-~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~  155 (195)
T d1kola2          77 SLDTPLHEQIAALLGEPE-VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAK  155 (195)
T ss_dssp             TSSSCHHHHHHHHHSSSC-EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHH
T ss_pred             CCCcCHHHHHHHHhCCCC-cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhh
Confidence            87654 477999998887 99999999953                458899999999999999964422          


Q ss_pred             --CcccccccceecceEEEEEechhhccccCHHHHHHHHHHHHHHHHcCC
Q 021311          233 --PITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGK  280 (314)
Q Consensus       233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  280 (314)
                        ..+++....+.+++++.+...          ..++.++++++++.+++
T Consensus       156 ~~~~~~~~~~~~~k~~~i~~g~~----------~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         156 IGSLSIRFGLGWAKSHSFHTGQT----------PVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             TTCCCCCHHHHHHTTCEEEESSC----------CHHHHHHHHHHHHHTTS
T ss_pred             cCceeeeHHHHHhhcceeccCCC----------chHHHHHHHHHHHHcCC
Confidence              123344456677887754211          24466778888888764

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.62  E-value=2.2e-15  Score=111.32  Aligned_cols=117  Identities=18%  Similarity=0.191  Sum_probs=88.4

Q ss_pred             CccCCCCCCCCCcEEEEEEeecCChhhhhhhccCCCCCCCCCccCCcceEEEEEEecCCCCCCCCCCEEeeCCCCCCccc
Q 021311            1 MIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPAVGGYEGVGEVYSVGSAVTRLAPGDWVIPSPPSSGTWQ   80 (314)
Q Consensus         1 i~~~~~p~~~~~eV~v~v~~~~i~~~D~~~~~~~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~g~~~   80 (314)
                      ++|.+.|+|+++||+||++|.++++..+......     .....+..+.+|+|++  |++++|++||+|++.    ++|+
T Consensus        24 l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~-----~~g~~~~g~~vg~Vv~--S~~~~f~~GD~V~g~----~gw~   92 (147)
T d1v3va1          24 LKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL-----KEGAVMMGQQVARVVE--SKNSAFPAGSIVLAQ----SGWT   92 (147)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS-----CTTSBCCCCEEEEEEE--ESCTTSCTTCEEEEC----CCSB
T ss_pred             EEEEECCCCCCCEEEEEEEEEeEccccccccccc-----ccCCccccceEEEEEE--eCCCcccCCCEEEEc----cCCE
Confidence            3578899999999999999999988755433321     1223455678999987  888899999999976    5899


Q ss_pred             ceEeeeccceEEcCCCCCH-----HHhhcccccHHH-HHHHHHHhhcCCCCCEEEE
Q 021311           81 SYVVKDQSVWHKVSKDSPM-----EYAATIIVNPLT-ALRMLEDFTTLNSGDSIVQ  130 (314)
Q Consensus        81 ~~~~~~~~~~~~~p~~~~~-----~~aa~~~~~~~t-a~~~l~~~~~~~~~~~vlI  130 (314)
                      ||.+.+.+.+.++|+..+.     ...+++....+| ||..+..  ..+.|++||+
T Consensus        93 ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~--~~k~Getvv~  146 (147)
T d1v3va1          93 THFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLN--GANLGKAVVT  146 (147)
T ss_dssp             SEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHT--TCCSSEEEEE
T ss_pred             eEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhhC--CCCCCCEEEe
Confidence            9999999999999876543     234556666777 4546644  4567999987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.3e-15  Score=97.46  Aligned_cols=74  Identities=24%  Similarity=0.268  Sum_probs=66.3

Q ss_pred             CCHHHhhcccccHHHHHHHHH---HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC
Q 021311           97 SPMEYAATIIVNPLTALRMLE---DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG  173 (314)
Q Consensus        97 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg  173 (314)
                      +|+++|+.++++++|||++++   +....+++++|||+|++|++|.+++|+++.+|++|+++++    ++++.++++++|
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~----s~~k~~~~~~lG   76 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG----RESTHEYLKSLG   76 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES----CGGGHHHHHHHT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC----CHHHHHHHHHCC
Confidence            589999999999999998765   4455689999999999999999999999999999999984    788899999988


Q ss_pred             C
Q 021311          174 A  174 (314)
Q Consensus       174 ~  174 (314)
                      +
T Consensus        77 A   77 (77)
T d1o8ca2          77 A   77 (77)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.18  E-value=9.1e-06  Score=60.39  Aligned_cols=119  Identities=11%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC---------------------hh
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES---------------------QL  183 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~---------------------~~  183 (314)
                      .-+|+|+|+ |..|+.++..|+.+|+.|.+.-.    +.++++.+++++...+....                     ..
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~----~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDV----RAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CSTTHHHHHHTTCEECCC-----------------------CC
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEec----cHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            469999999 99999999999999999887773    67778888888876542100                     00


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCc-----c--HHHHHHhcccCCEEEEEcCCCCCCcc--cccccceecceEEEEE
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGN-----S--ASKVLKFLSQGGTMVTYGGMSKKPIT--VSTSAFIFKDLSLKGF  251 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~-----~--~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~  251 (314)
                      ..+.+.+....   .|+|+-++--+     .  .+..++.|++|+.+|.+....+..++  -+.+-+...++.+.+.
T Consensus       104 ~~~~l~~~l~~---aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~~~gv  177 (183)
T d1l7da1         104 QAEAVLKELVK---TDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGH  177 (183)
T ss_dssp             HHHHHHHHHTT---CSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECC
T ss_pred             HHHHHHHHHHh---hhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEEEEee
Confidence            11234444443   99999887432     2  28999999999999999866555432  2223345566666553

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.5e-05  Score=63.32  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|+++||+|+++++|.+.++.+...|++|+.+.+    ++++.+.+ ++++....+..+-.+.+.+++.....|++|+++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r----~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilV   81 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSR----TQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEEC----CHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence            6899999999999999999999999999988875    45554443 556554444433333445666555666799999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        82 nnAg~   86 (244)
T d1pr9a_          82 NNAAV   86 (244)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            99985

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=8.6e-06  Score=64.63  Aligned_cols=102  Identities=20%  Similarity=0.357  Sum_probs=67.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcE---EEecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADE---VFTESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~---~~~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.+.++.+...|++|+++.+    ++++.+.+ ++++...   ..|-.+ ...++ +.+.....|+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r----~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTAT----SENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGE   78 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence            5899999999999999999999999999988775    45544433 4455432   223322 22223 3333344456


Q ss_pred             CcEEEecCCCc--------------------------cHHHHHHhc--ccCCEEEEEcCC
Q 021311          198 PALGFNCVGGN--------------------------SASKVLKFL--SQGGTMVTYGGM  229 (314)
Q Consensus       198 ~d~v~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~  229 (314)
                      +|++++++|..                          ..+.+++.|  +.+|++|.+++.
T Consensus        79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~  138 (243)
T d1q7ba_          79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV  138 (243)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             cceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence            99999999852                          113455565  346999999854

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.8e-05  Score=62.69  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=58.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|+++||+|+++++|.+.++.+...|++|+++.+    ++++.+ ..++++....+..+-.+.+.+.+.....|++|+++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r----~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTR----TNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence            5899999999999999999999999999998885    444443 33455544444333333445666666666799999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      +++|.
T Consensus        80 nnAg~   84 (242)
T d1cyda_          80 NNAAL   84 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99985

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=1.9e-05  Score=62.79  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecCh-hhHHH-HHHHhcCCCCCcE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTESQ-LEVKN-VKGLLANLPEPAL  200 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~-~~~~~-i~~~~~~~g~~d~  200 (314)
                      .|+++||+|+++++|.+.++.+...|++|+.+.+    +++..+.+++++...+ .|-.+ ...++ +.+.....|++|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi   79 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDL----RPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDV   79 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----STTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCe
Confidence            6899999999999999999999999999988775    4455566666665533 23222 22222 2222333346999


Q ss_pred             EEecCCCc--------------------------cHHHHHHhccc--CCEEEEEcCCC
Q 021311          201 GFNCVGGN--------------------------SASKVLKFLSQ--GGTMVTYGGMS  230 (314)
Q Consensus       201 v~d~~g~~--------------------------~~~~~~~~l~~--~G~~v~~g~~~  230 (314)
                      +++++|..                          ....+++.|+.  +|++|.+++..
T Consensus        80 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~  137 (248)
T d2d1ya1          80 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ  137 (248)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence            99999852                          01345556643  68999998654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.99  E-value=0.00013  Score=53.20  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=72.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc--EEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD--EVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      +.-+|+|+|+ |..|+.+++.|+.+|+.+.+.-.    +.++++.++.....  .....++.   .+.+....   .|+|
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~----~~~~l~~l~~~~~~~~~~~~~~~~---~l~~~~~~---aDiv   99 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDI----NVERLSYLETLFGSRVELLYSNSA---EIETAVAE---ADLL   99 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHGGGSEEEECCHH---HHHHHHHT---CSEE
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeC----cHHHHHHHHHhhcccceeehhhhh---hHHHhhcc---CcEE
Confidence            4579999999 99999999999999999988873    67777777654322  22222222   23333333   9999


Q ss_pred             EecCCCc-----c--HHHHHHhcccCCEEEEEcCCCCCCc
Q 021311          202 FNCVGGN-----S--ASKVLKFLSQGGTMVTYGGMSKKPI  234 (314)
Q Consensus       202 ~d~~g~~-----~--~~~~~~~l~~~G~~v~~g~~~~~~~  234 (314)
                      +.++--+     .  ....++.|++++.+|.+....+..+
T Consensus       100 I~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~  139 (168)
T d1pjca1         100 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCV  139 (168)
T ss_dssp             EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSB
T ss_pred             EEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCcc
Confidence            9988532     1  2899999999999999987665543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=3.4e-05  Score=63.13  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC-----CcHHH----HHHHHhCCCcEEEecChh-hHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA-----GSDEA----KEKLKGLGADEVFTESQL-EVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~-----~~~~~----~~~~~~lg~~~~~~~~~~-~~~~-i~~~~  192 (314)
                      .|+++||+|+++++|.+.++.+...|++|++......     ..++.    .+.+...+.....|..+. ..++ +.+..
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            5899999999999999999999999999887643211     12222    223344555555555432 2222 44444


Q ss_pred             cCCCCCcEEEecCCCc--------------------------cHHHHHHhcc--cCCEEEEEcCCC
Q 021311          193 ANLPEPALGFNCVGGN--------------------------SASKVLKFLS--QGGTMVTYGGMS  230 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~--------------------------~~~~~~~~l~--~~G~~v~~g~~~  230 (314)
                      ...|++|++++++|..                          ....++..|+  .+|+||.+++..
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~  151 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASAS  151 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChh
Confidence            4445699999999852                          1134555553  458999998543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.4e-05  Score=61.06  Aligned_cols=104  Identities=20%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecChh-hHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQL-EVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~  194 (314)
                      .|+++||+|+++++|...+..+...|++++.+.+    ++++.+    .+++.|.... +  |..+. ..+. +++....
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r----~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDI----NKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999888899999999886    444443    3345665432 2  22222 2222 3333344


Q ss_pred             CCCCcEEEecCCCcc--------------------------HHHHHHhccc--CCEEEEEcCCCC
Q 021311          195 LPEPALGFNCVGGNS--------------------------ASKVLKFLSQ--GGTMVTYGGMSK  231 (314)
Q Consensus       195 ~g~~d~v~d~~g~~~--------------------------~~~~~~~l~~--~G~~v~~g~~~~  231 (314)
                      .|++|++++|+|...                          ...+++.|..  .|++|.+++..+
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence            456999999999631                          1345555543  578999886554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.97  E-value=1.2e-05  Score=61.38  Aligned_cols=77  Identities=10%  Similarity=0.001  Sum_probs=53.1

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-Hh----CC-CcEEEecChhhHHHHHHHhcCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KG----LG-ADEVFTESQLEVKNVKGLLANL  195 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~----lg-~~~~~~~~~~~~~~i~~~~~~~  195 (314)
                      -=.|++++|+|++|++|..+++.+...|++++++.+    +.++.+.+ ..    .. .....|..+  .+.+.+..+  
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~--   91 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGR----KLDKAQAAADSVNKRFKVNVTAAETAD--DASRAEAVK--   91 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----SHHHHHHHHHHHHHHHTCCCEEEECCS--HHHHHHHTT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhccc----chHHHHHHHHHHHhccchhhhhhhccc--HHHHHHHhc--
Confidence            348899999999999999999999999999998886    44443333 11    11 122333333  234444443  


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                       ++|++|+|+|.
T Consensus        92 -~iDilin~Ag~  102 (191)
T d1luaa1          92 -GAHFVFTAGAI  102 (191)
T ss_dssp             -TCSEEEECCCT
T ss_pred             -CcCeeeecCcc
Confidence             49999999885

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.93  E-value=5e-05  Score=60.66  Aligned_cols=101  Identities=15%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecCh-hhHHH----HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQ-LEVKN----VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~-~~~~~----i~~~  191 (314)
                      .|+++||+|+++++|.+.++.+...|++++.+.+    ++++.+    .+.+.+.... +  |-.+ ...++    +.+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r----~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCAR----NEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999988875    444433    3334443322 2  3322 22233    2222


Q ss_pred             hcCCCCCcEEEecCCCcc--------------------------HHHHHHhcc--cCCEEEEEcCCC
Q 021311          192 LANLPEPALGFNCVGGNS--------------------------ASKVLKFLS--QGGTMVTYGGMS  230 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~  230 (314)
                      .++  .+|++++++|...                          .+.+++.|+  .+|++|.+++..
T Consensus        83 ~~g--~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~  147 (259)
T d1xq1a_          83 FGG--KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIA  147 (259)
T ss_dssp             HTT--CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---
T ss_pred             hCC--CcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccc
Confidence            223  5999999998520                          134445553  468999998654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.9e-05  Score=60.37  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecC--h-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTES--Q-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~--~-~~~~~-i~~~~~~~g~~  198 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+    ++++.+.+ ++++....+..+  + +.+++ +.+.....|++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r----~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDK----DESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRL   80 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            5899999999999999999999999999988774    55555555 445543333222  2 22223 22222333469


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        81 DilVnnAG~   89 (250)
T d1ydea1          81 DCVVNNAGH   89 (250)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEecccc
Confidence            999999984

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.91  E-value=3.9e-05  Score=61.04  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=67.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEEE---ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEVF---TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~  194 (314)
                      .|+.+||+|+++++|.+.++.+...|++++++.+    ++++.    +.+++.|.....   |-.+ ..+++ +.+....
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r----~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISR----TQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEES----SHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999988899999988875    34443    344556654332   2222 22333 3333344


Q ss_pred             CCCCcEEEecCCCc--------------------------cHHHHHHhc--ccCCEEEEEcCCC
Q 021311          195 LPEPALGFNCVGGN--------------------------SASKVLKFL--SQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g~~d~v~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~~  230 (314)
                      .|++|++++++|..                          ....+++.|  +.+|+||.+++..
T Consensus        85 ~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  148 (251)
T d2c07a1          85 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV  148 (251)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             cCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHH
Confidence            45699999999852                          013344444  3469999998543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.90  E-value=5.7e-05  Score=60.37  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEE-E--ecCh-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEV-F--TESQ-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~  194 (314)
                      .|+++||+|+++++|.+.+..+...|++++.+.+    ++++.+    .++..|.... +  |-.+ ..+++ +.+....
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r----~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM----NREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999988775    444433    3445565432 2  2222 22222 2222233


Q ss_pred             CCCCcEEEecCCC
Q 021311          195 LPEPALGFNCVGG  207 (314)
Q Consensus       195 ~g~~d~v~d~~g~  207 (314)
                      .|++|++++++|.
T Consensus        80 ~g~iDilVnnaG~   92 (260)
T d1zema1          80 FGKIDFLFNNAGY   92 (260)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCeehhhhcc
Confidence            3469999999884

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.90  E-value=9.3e-05  Score=58.81  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=68.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEEEe---cCh-hhHHHH-HHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEVFT---ESQ-LEVKNV-KGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~~~---~~~-~~~~~i-~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.+.++.+...|++|+.+.+    ++++.+. .++++.....-   -.+ ...+++ .+.....|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDI----NEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999999887774    4455443 45666654432   222 222332 222223346


Q ss_pred             CcEEEecCCCc--------------------------cHHHHHHhcc-cCCEEEEEcCCC
Q 021311          198 PALGFNCVGGN--------------------------SASKVLKFLS-QGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~--------------------------~~~~~~~~l~-~~G~~v~~g~~~  230 (314)
                      +|++++++|..                          ....+++.|+ .+|++|.+++..
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~  140 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS  140 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence            99999999852                          0134555664 579999998654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.89  E-value=6.5e-05  Score=60.01  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEEE---ecCh-hhHHHH-HHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEVF---TESQ-LEVKNV-KGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~~---~~~~-~~~~~i-~~~~~~  194 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+    ++++.    +.+++.+.....   |-.+ ...+++ .+....
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r----~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSR----NQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999988875    34443    333445544332   2222 222332 222222


Q ss_pred             CC-CCcEEEecCCCc--------------------------cHHHHHHhc--ccCCEEEEEcCCC
Q 021311          195 LP-EPALGFNCVGGN--------------------------SASKVLKFL--SQGGTMVTYGGMS  230 (314)
Q Consensus       195 ~g-~~d~v~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~~  230 (314)
                      .+ ++|++++++|..                          ....+++.|  +.+|++|.+++..
T Consensus        83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~  147 (259)
T d2ae2a_          83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVS  147 (259)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGG
T ss_pred             hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccc
Confidence            22 599999999852                          013344455  3469999998654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.88  E-value=3.3e-05  Score=61.81  Aligned_cols=103  Identities=22%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH----HHHHHhCCCcEE-EecC--h-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA----KEKLKGLGADEV-FTES--Q-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~----~~~~~~lg~~~~-~~~~--~-~~~~~-i~~~~~~  194 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+.   +++.    .+.+++.|.+.. +..+  + ...+. +.+....
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~---~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS---SSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC---ChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999987754   3333    344456776543 2222  2 12222 2222333


Q ss_pred             CCCCcEEEecCCCc--------------------------cHHHHHHhcccCCEEEEEcCC
Q 021311          195 LPEPALGFNCVGGN--------------------------SASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       195 ~g~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      .|++|++++++|..                          ....+++.|+.+|+++.+.+.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~  142 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  142 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence            34699999999952                          114566778888888887643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.87  E-value=3.5e-05  Score=61.51  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh---hHHHH-HHHhcCCCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKNV-KGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~---~~~~i-~~~~~~~g~  197 (314)
                      .|+++||+|++|  ++|.+.++.+...|++|+++.+.+...++..+.....+....+..+-.   ..+++ .+.....|+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            589999999976  799999998989999987766532211222233344555555543322   22222 222222236


Q ss_pred             CcEEEecCCCcc---------------H---------------HHHHHhcccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGNS---------------A---------------SKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~~---------------~---------------~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +|++++++|...               +               ..++..|+.+|++|.+++..
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~  149 (256)
T d1ulua_          87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYA  149 (256)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGG
T ss_pred             ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehH
Confidence            999999997410               0               12334567789999988554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.87  E-value=9.3e-05  Score=58.83  Aligned_cols=104  Identities=15%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .|+++||+|+++++|.+.++.+...|++++.+.+.   .++..+..++++.....   |-.+ +..++ +.+.....|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVL---DEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence            58999999999999999999999999998887753   33333445667654332   2222 22333 22222233469


Q ss_pred             cEEEecCCCc--------------------------cHHHHHHhcc--cCCEEEEEcCCC
Q 021311          199 ALGFNCVGGN--------------------------SASKVLKFLS--QGGTMVTYGGMS  230 (314)
Q Consensus       199 d~v~d~~g~~--------------------------~~~~~~~~l~--~~G~~v~~g~~~  230 (314)
                      |++++++|..                          ....+++.|+  .+|++|.+++..
T Consensus        81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~  140 (254)
T d1hdca_          81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAA  140 (254)
T ss_dssp             CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             cEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccch
Confidence            9999999852                          0133444443  469999998654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3e-05  Score=62.64  Aligned_cols=102  Identities=16%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             CCEE-EEcCCCcHHHHHHHH-HHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEE--ecChh-hH----HHHHHHhcC
Q 021311          125 GDSI-VQNGATSIVGQCIIQ-IARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVF--TESQL-EV----KNVKGLLAN  194 (314)
Q Consensus       125 ~~~v-lI~g~~g~~G~~a~~-la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~--~~~~~-~~----~~i~~~~~~  194 (314)
                      |++| ||+|+++++|+++++ +++..|++++.+.+..++.++..+.+++.+.. ..+  |-.+. .+    +++.+..  
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~--   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY--   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc--
Confidence            6677 899999999999875 45566899998886422222223334444443 222  22221 22    3333332  


Q ss_pred             CCCCcEEEecCCCc--------------------------cHHHHHHhcccCCEEEEEcCC
Q 021311          195 LPEPALGFNCVGGN--------------------------SASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       195 ~g~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  229 (314)
                       |++|++++++|..                          ....++..|+++|++|.+++.
T Consensus        80 -g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          80 -GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             -SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             -CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence             3599999999852                          013456677889999998753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=8.5e-05  Score=58.98  Aligned_cols=102  Identities=19%  Similarity=0.254  Sum_probs=65.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-----HHHhCCCcEE-E--ecCh-hhHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-----KLKGLGADEV-F--TESQ-LEVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-----~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~  193 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+    ++++.+     ..++.|.... +  |-.+ ..+++ +.+...
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r----~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR----NLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999988875    333322     2234455432 2  3222 22222 222222


Q ss_pred             CCCCCcEEEecCCCc--------------------------cHHHHHHhcc--cCCEEEEEcCC
Q 021311          194 NLPEPALGFNCVGGN--------------------------SASKVLKFLS--QGGTMVTYGGM  229 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~--------------------------~~~~~~~~l~--~~G~~v~~g~~  229 (314)
                      ..|++|++++++|..                          ..+.+++.|+  .+|++|.+++.
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            234699999999852                          1144566664  45899999854

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.5e-05  Score=59.92  Aligned_cols=80  Identities=14%  Similarity=0.210  Sum_probs=52.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCc-EE--E--ecCh-hhHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGAD-EV--F--TESQ-LEVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~-~~--~--~~~~-~~~~~-i~~~~  192 (314)
                      +|+++||+|+++++|.+.+..+...|++++.+.+    ++++.+.    +++.+.. .+  +  |-.+ +.+++ +.+..
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r----~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCAR----TVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999988875    4444433    3444321 22  2  2222 22322 22222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...|++|++++++|.
T Consensus        85 ~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          85 SQHSGVDICINNAGL   99 (257)
T ss_dssp             HHHCCCSEEEECCCC
T ss_pred             HhcCCCCEEEecccc
Confidence            233469999999986

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.81  E-value=0.00023  Score=56.29  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHHHH-HHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVKNV-KGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~~i-~~~~~~~g~~  198 (314)
                      .|+.+||+|+++++|.+.++.+...|++++++.+.+  .++....++..|.....   |-.+ ...+++ .+.....|++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~--~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP--APEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC--CHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc--hHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            479999999999999999999999999998887642  34445566777765432   2222 222332 2222333469


Q ss_pred             cEEEecCCCcc--------------------------HHHHHHhcc--cCCEEEEEcCCC
Q 021311          199 ALGFNCVGGNS--------------------------ASKVLKFLS--QGGTMVTYGGMS  230 (314)
Q Consensus       199 d~v~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~  230 (314)
                      |++++++|...                          ...+++.|+  .+|++|.+++..
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~  141 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTT  141 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccch
Confidence            99999998520                          133455553  358999998654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.73  E-value=0.00018  Score=57.82  Aligned_cols=103  Identities=18%  Similarity=0.237  Sum_probs=69.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH----HHHHHhCCCcEEEe-cC--h-hhHHH-HHHHhcC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA----KEKLKGLGADEVFT-ES--Q-LEVKN-VKGLLAN  194 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~----~~~~~~lg~~~~~~-~~--~-~~~~~-i~~~~~~  194 (314)
                      .|+++||+|+++++|.+.++.+...|++|+++.+.   +++.    .+.+++.+.+.... .+  + +.+++ +.+....
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~---~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN---STESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC---chHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999887753   3333    33445666654432 22  2 12222 2222233


Q ss_pred             CCCCcEEEecCCCc--------------------------cHHHHHHhcccCCEEEEEcCC
Q 021311          195 LPEPALGFNCVGGN--------------------------SASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       195 ~g~~d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      .|++|++++++|..                          ....++..|..+|+++.+++.
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~  154 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI  154 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence            34699999999852                          114566778889999988754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.72  E-value=3.9e-05  Score=59.26  Aligned_cols=104  Identities=16%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCC
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      +.+++++|++||.+|+  +.|+.++.+++..|.+++++...+.-.+...+.++++|.+.+.-...+.    ..-....+.
T Consensus        72 ~~L~l~~g~~VLeIGs--GsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~----~~g~~~~~p  145 (215)
T d1jg1a_          72 EIANLKPGMNILEVGT--GSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG----SKGFPPKAP  145 (215)
T ss_dssp             HHHTCCTTCCEEEECC--TTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG----GGCCGGGCC
T ss_pred             HhhccCccceEEEecC--CCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcc----ccCCcccCc
Confidence            4588999999999997  4588888888888878887774321122333444567755433222111    010011125


Q ss_pred             CcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          198 PALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       198 ~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ||.|+-+.+-+.. ...++.|++||++|..-
T Consensus       146 fD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEeecccccCCHHHHHhcCCCCEEEEEE
Confidence            9999987776655 78889999999999854

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=7.6e-05  Score=59.06  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=54.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+    ++++.+.+.+.......-.+....+.+.......+++|++++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r----~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn   80 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDI----NESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFN   80 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHhccCCceeeeeccccccccccccccccceeEEe
Confidence            5799999999999999999999999999998885    566655554433332222222222222222223335999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      ++|.
T Consensus        81 ~ag~   84 (245)
T d2ag5a1          81 VAGF   84 (245)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9985

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.71  E-value=8.1e-05  Score=59.37  Aligned_cols=82  Identities=17%  Similarity=0.158  Sum_probs=54.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHH----HHHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVK----NVKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~----~i~~~~~~~  195 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+.....++..+.+++.+.....   |-.+ +..+    .+.+..++ 
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g-   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG-   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC-
Confidence            6899999999999999999999999999999886322112233344556655433   2222 2222    23333323 


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                       .+|++++++|.
T Consensus        84 -~idilinnag~   94 (258)
T d1ae1a_          84 -KLNILVNNAGV   94 (258)
T ss_dssp             -CCCEEEECCCC
T ss_pred             -CcEEEeccccc
Confidence             59999999986

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.70  E-value=0.00044  Score=54.31  Aligned_cols=105  Identities=22%  Similarity=0.293  Sum_probs=69.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~~  198 (314)
                      .|+++||+|+++++|.+.++-+...|++|+.+.+.   .+...+..++++.....   |-.+ +..++ +.+.....|++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i   80 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDRE---ERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL   80 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            58999999999999999999999999999988853   33334455677765432   2222 22222 22222222359


Q ss_pred             cEEEecCCCc--------------------------cHHHHHHhcccCCEEEEEcCCCC
Q 021311          199 ALGFNCVGGN--------------------------SASKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       199 d~v~d~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      |+++++++..                          .....+..+..++.++.++....
T Consensus        81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~  139 (241)
T d2a4ka1          81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  139 (241)
T ss_dssp             CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccc
Confidence            9999998742                          01345566777788777765443

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.67  E-value=0.00011  Score=58.37  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEE----EecC-h-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEV----FTES-Q-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~----~~~~-~-~~~~~-i~~~~~~~  195 (314)
                      .|+++||+|+++++|.+++..+...|++++++.+.... .+....++ ..+...+    .|.. + ...++ +.+.....
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN-PTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC-HHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCccc-HHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            48999999999999999999999999999999876543 33333332 2333222    1222 1 12222 22222222


Q ss_pred             CCCcEEEecCCCcc------------------HHHHHHhcc-----cCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNS------------------ASKVLKFLS-----QGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~------------------~~~~~~~l~-----~~G~~v~~g~~~  230 (314)
                      |++|++++++|...                  ...+++.|.     ++|++|.+++..
T Consensus        83 g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~  140 (254)
T d1sbya1          83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVT  140 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechh
Confidence            35999999999631                  133444552     358899887554

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.67  E-value=0.00013  Score=57.49  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE-EecCh-hhHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV-FTESQ-LEVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~~~~~-~~~~~-i~~~~~~~g~~d  199 (314)
                      .|+++||+|+++++|.+.++.+...|++|+.+.+    ++++.+.+ ++++...+ .|-.+ +.+++ +.+.....|++|
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r----~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   79 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDI----EEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLD   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCce
Confidence            4799999999999999999999999999988875    45555444 55665433 23222 22222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        80 ilVnnAG~   87 (242)
T d1ulsa_          80 GVVHYAGI   87 (242)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999985

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=1.5e-05  Score=62.95  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=62.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---hh----HHHHHHHhcCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---LE----VKNVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---~~----~~~i~~~~~~~g  196 (314)
                      .|++|||+|+++++|.+.++.+...|++++.+.....  ++       ...........   ..    ...+.+..+.. 
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   70 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN--EE-------ASASVIVKMTDSFTEQADQVTAEVGKLLGDQ-   70 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC--TT-------SSEEEECCCCSCHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc--cc-------ccccceeecccCcHHHHHHHHHHHHHHhCCC-
Confidence            4799999999999999999999999999987764321  10       01111111111   11    12333333332 


Q ss_pred             CCcEEEecCCCc---------------------------cHHHHHHhcccCCEEEEEcCCC
Q 021311          197 EPALGFNCVGGN---------------------------SASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       197 ~~d~v~d~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ++|++++++|.-                           ....+++.|+++|++|.+++..
T Consensus        71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~  131 (236)
T d1dhra_          71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  131 (236)
T ss_dssp             CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHH
Confidence            499999999841                           0133556778899999998543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00019  Score=57.01  Aligned_cols=103  Identities=15%  Similarity=0.262  Sum_probs=64.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC----C-CcEE-E--ecCh-hhHHH-HHHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL----G-ADEV-F--TESQ-LEVKN-VKGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l----g-~~~~-~--~~~~-~~~~~-i~~~~  192 (314)
                      .|+++||+|+++++|.++++.+...|++++++.+    ++++.+.+ .++    + .... +  |-.+ ..+++ +.+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r----~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDW----NLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            5899999999999999999999999999988885    44443332 222    2 1221 2  3222 22222 22222


Q ss_pred             cCCCCCcEEEecCCCcc------------------HHHHHHhccc-----CCEEEEEcCCC
Q 021311          193 ANLPEPALGFNCVGGNS------------------ASKVLKFLSQ-----GGTMVTYGGMS  230 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~~------------------~~~~~~~l~~-----~G~~v~~g~~~  230 (314)
                      ...|++|++++++|...                  ...+++.|++     +|++|.+++..
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             HHcCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence            33346999999999631                  1334455533     48899998654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.64  E-value=5.6e-05  Score=60.70  Aligned_cols=80  Identities=16%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCC---CcEEE--ecCh-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLG---ADEVF--TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg---~~~~~--~~~~-~~~~~-i~~~~~~~  195 (314)
                      .|+++||+|+++++|.+.++.+...|++|+++.+    ++++.+.+ ++++   ....+  |-.+ +.+++ +.+.....
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r----~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADI----ADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999999988875    44444433 3332   22233  2222 22222 22222333


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      |++|++++++|.
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            469999999984

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.64  E-value=0.00038  Score=55.38  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-----HhCCCcEEE---ecCh-hhHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-----KGLGADEVF---TESQ-LEVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-----~~lg~~~~~---~~~~-~~~~~-i~~~~~  193 (314)
                      .|+++||+|+++++|.+.++.+...|++++.+.+.   ..+..+.+     ...|.....   |-.+ +.+++ +.+...
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~---~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG---DAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS---CHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC---cHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999999888754   23332222     233444332   2222 22222 222222


Q ss_pred             CCCCCcEEEecCCCc--------------------------cHHHHHHhccc--CCEEEEEcCCC
Q 021311          194 NLPEPALGFNCVGGN--------------------------SASKVLKFLSQ--GGTMVTYGGMS  230 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~--------------------------~~~~~~~~l~~--~G~~v~~g~~~  230 (314)
                      ..|++|++++++|..                          ....+++.|+.  +|++|.+++..
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~  144 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH  144 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccc
Confidence            234699999999852                          01345555543  58999998654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00011  Score=58.44  Aligned_cols=84  Identities=15%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE-EecC--h-hhHHHH-HHHhcCCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV-FTES--Q-LEVKNV-KGLLANLPEP  198 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~-~~~~--~-~~~~~i-~~~~~~~g~~  198 (314)
                      .|+++||+|+++++|.+.++.+...|++++.+.+..+.-++..+.+++.|.... +..+  + ...+++ .+.....|++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999999999999887532111222334455665433 2222  2 222222 2222222469


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |++++++|.
T Consensus        90 DilvnnAG~   98 (255)
T d1fmca_          90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEeeeCCcC
Confidence            999999985

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.56  E-value=0.00015  Score=57.77  Aligned_cols=83  Identities=18%  Similarity=0.208  Sum_probs=53.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~~d  199 (314)
                      |+.+||+|+++++|.+.+..+...|++++++.+....-++..+.+++.|.....   |-.+ +.+++ +.+.....|++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            678899999999999999999999999988875321112223344556654332   2222 22333 233333345699


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999985

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.55  E-value=9.2e-05  Score=58.78  Aligned_cols=80  Identities=19%  Similarity=0.155  Sum_probs=51.7

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCC---CcEEE--ecCh-hhHHH-HHHHhcCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLG---ADEVF--TESQ-LEVKN-VKGLLANL  195 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg---~~~~~--~~~~-~~~~~-i~~~~~~~  195 (314)
                      .|+++||+|+++++|.+.++.+...|++|+.+.+    ++++.+.+ +.++   ....+  |-.+ ..+++ +.+.....
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999988875    44444433 2332   12223  2222 22222 22222223


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      |++|++++++|.
T Consensus        81 G~iDiLVnnAg~   92 (251)
T d1zk4a1          81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            469999999985

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.55  E-value=0.00011  Score=59.08  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCc----EEE--ecCh-hhHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGAD----EVF--TESQ-LEVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~----~~~--~~~~-~~~~~-i~~~  191 (314)
                      .|+++||+|+++++|.+.++.+...|++|+.+.+    ++++.+    .+++.+..    ..+  |-.+ ..+++ +.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r----~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGR----SSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence            4799999999999999999999999999988885    444443    33444321    122  3222 22333 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        80 ~~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCceEEEeCCcc
Confidence            2333469999999885

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00021  Score=57.27  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-----hCCCcEE-EecC--h-hhHHH-HHHHh
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-----GLGADEV-FTES--Q-LEVKN-VKGLL  192 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-----~lg~~~~-~~~~--~-~~~~~-i~~~~  192 (314)
                      =.|+++||+||++++|++.+..+...|++++.+.+    ++++.+.+.     ..+.... +..+  + ...+. .....
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r----~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   87 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTAR----SKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG   87 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH
Confidence            36899999999999999999999999999999986    555554442     2333222 2222  1 11222 11122


Q ss_pred             cCCCCCcEEEecCCCc--------------------------cHHHHHHhcc-cCCEEEEEcCCC
Q 021311          193 ANLPEPALGFNCVGGN--------------------------SASKVLKFLS-QGGTMVTYGGMS  230 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~--------------------------~~~~~~~~l~-~~G~~v~~g~~~  230 (314)
                      ...|.+|++++++|..                          ....++..|+ .+|+++.+++..
T Consensus        88 ~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~  152 (269)
T d1xu9a_          88 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLA  152 (269)
T ss_dssp             HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred             HHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccch
Confidence            2223599999988752                          0133444443 578999988544

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.55  E-value=0.00026  Score=55.78  Aligned_cols=101  Identities=17%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .+||+|+++++|++.++.+...|+++++....   +++..    +.++..|.... +  |-.+ +.+++ +.+.....|+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~---~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYAR---SAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999999999876543   33333    33344554432 2  2222 22333 2333333456


Q ss_pred             CcEEEecCCCc--------------------------cHHHHHHhc--ccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGN--------------------------SASKVLKFL--SQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~~  230 (314)
                      +|++++++|..                          ....+++.|  +.+|++|.+++..
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  140 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVV  140 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChh
Confidence            99999999852                          114455666  4579999998644

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.54  E-value=0.00075  Score=49.21  Aligned_cols=85  Identities=15%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCcEEEecChhhHHHHHH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGADEVFTESQLEVKNVKG  190 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~i~~  190 (314)
                      |.....+...--.+++|||+|+ |.+|.++++.+...|++.+.++..   +.++ .+.++.++.. ..++.     ++.+
T Consensus        11 Av~la~~~~~~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nR---t~~ka~~l~~~~~~~-~~~~~-----~~~~   80 (159)
T d1gpja2          11 AVELAERELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANR---TYERAVELARDLGGE-AVRFD-----ELVD   80 (159)
T ss_dssp             HHHHHHHHHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECS---SHHHHHHHHHHHTCE-ECCGG-----GHHH
T ss_pred             HHHHHHHHhCCcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcC---cHHHHHHHHHhhhcc-cccch-----hHHH
Confidence            4444444444457899999999 999999999999899976666643   4333 4566777743 33333     2333


Q ss_pred             HhcCCCCCcEEEecCCCcc
Q 021311          191 LLANLPEPALGFNCVGGNS  209 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~  209 (314)
                      ...   .+|+||.|++.+.
T Consensus        81 ~l~---~~Divi~atss~~   96 (159)
T d1gpja2          81 HLA---RSDVVVSATAAPH   96 (159)
T ss_dssp             HHH---TCSEEEECCSSSS
T ss_pred             Hhc---cCCEEEEecCCCC
Confidence            333   3999999999854

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=8.3e-05  Score=57.45  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=64.1

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHH----hCCCcEE--EecChhhHHHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLK----GLGADEV--FTESQLEVKNV  188 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~----~lg~~~~--~~~~~~~~~~i  188 (314)
                      .+.+++++|++||-+|+ |. |..++.+++..|.  +++++-.    +++..+.++    ..+...+  +..+..     
T Consensus        68 l~~l~l~~g~~VLdiG~-Gt-G~~s~~la~~~~~~g~V~~id~----~~~~~~~a~~~~~~~~~~n~~~~~~d~~-----  136 (213)
T d1dl5a1          68 MEWVGLDKGMRVLEIGG-GT-GYNAAVMSRVVGEKGLVVSVEY----SRKICEIAKRNVERLGIENVIFVCGDGY-----  136 (213)
T ss_dssp             HHHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEES----CHHHHHHHHHHHHHTTCCSEEEEESCGG-----
T ss_pred             HHhhhccccceEEEecC-cc-chhHHHHHHHhCCCCcEEEeec----chhhHHHhhhhHhhhcccccccccCchH-----
Confidence            34588999999999998 33 8888889988764  4555542    555555553    3443322  222211     


Q ss_pred             HHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          189 KGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                       +.....+.||+|+.+.+-... +..++.|+|||++|..-
T Consensus       137 -~~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         137 -YGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             -GCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             -HccccccchhhhhhhccHHHhHHHHHHhcCCCcEEEEEE
Confidence             101111259999988776555 77889999999998753

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=8.2e-05  Score=59.45  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHH----HhCCCc--EEEecChhhHHHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKL----KGLGAD--EVFTESQLEVKNV  188 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~----~~lg~~--~~~~~~~~~~~~i  188 (314)
                      ...++++||++||=.|+ | .|..+..+|+..|  .+++++-    .+++..+.+    +.++..  ..+...+     +
T Consensus        96 i~~l~i~pG~~VLDiG~-G-sG~lt~~lA~~~~~~G~V~~vD----~~~~~~~~A~~~~~~~g~~~~v~~~~~d-----~  164 (266)
T d1o54a_          96 AMMLDVKEGDRIIDTGV-G-SGAMCAVLARAVGSSGKVFAYE----KREEFAKLAESNLTKWGLIERVTIKVRD-----I  164 (266)
T ss_dssp             HHHTTCCTTCEEEEECC-T-TSHHHHHHHHHTTTTCEEEEEC----CCHHHHHHHHHHHHHTTCGGGEEEECCC-----G
T ss_pred             HHhhCCCCCCEEEECCC-C-CCHHHHHHHHHhCCCcEEEEEe----CCHHHHHHHHHHHHHhccccCcEEEecc-----c
Confidence            34589999999999998 3 3778888999876  4555555    266666655    345532  2222222     1


Q ss_pred             HHHhcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          189 KGLLANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                      ....... .+|.|+--...+  .+.++.+.|+|||+++.+.
T Consensus       165 ~~~~~~~-~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         165 SEGFDEK-DVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             GGCCSCC-SEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccc-ceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            1111222 388887666553  3489999999999998764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.51  E-value=0.00016  Score=58.18  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=52.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCc----EEE--ecCh-hhHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGAD----EVF--TESQ-LEVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~----~~~--~~~~-~~~~~-i~~~  191 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+    ++++.+    .+.+.+..    ..+  |-.+ ...++ +.+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r----~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGR----NEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            5899999999999999999999999999988875    444433    33444421    122  3222 22222 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        79 ~~~~G~iDilVnnAG~   94 (274)
T d1xhla_          79 LAKFGKIDILVNNAGA   94 (274)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCceEEEeeccc
Confidence            2233469999999884

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=0.00033  Score=55.13  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=53.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADEVF---TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.+.++.+...|++++.+.+    ++++.+ ..++++.....   |-.+ +.+++ +.+.....|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDI----LDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999999988775    444443 44556544332   2222 22222 2222232346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        81 idilinnAG~   90 (244)
T d1nffa_          81 LHVLVNNAGI   90 (244)
T ss_dssp             CCEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            9999999985

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.48  E-value=0.00022  Score=56.84  Aligned_cols=84  Identities=15%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC-CcHHHHHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA-GSDEAKEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+... ..++..+.+++.|.....   |-.+ +.+++ +.+.....|+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999999998886421 011223445566655332   2222 22223 2222223346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        86 iDiLVnnAG~   95 (261)
T d1geea_          86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeecccee
Confidence            9999999985

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.47  E-value=0.00051  Score=54.36  Aligned_cols=75  Identities=8%  Similarity=-0.061  Sum_probs=47.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcEEEecChh--hHHHHHHHhcCCCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADEVFTESQL--EVKNVKGLLANLPEPA  199 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~~~~~~~~--~~~~i~~~~~~~g~~d  199 (314)
                      .+.||+|+++++|++.+..+...|++|++..+.    .++.+.++    ......+.+..+.  .++++.+..   |++|
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~----~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~---G~iD   73 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHTVACHDES----FKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY---GQVD   73 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGG----GGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH---SCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHc---CCCC
Confidence            478999999999999999999999998877653    33333332    2332223332221  223333333   3599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        74 iLVnNAg~   81 (252)
T d1zmta1          74 VLVSNDIF   81 (252)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCcC
Confidence            99998874

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=0.00016  Score=57.77  Aligned_cols=80  Identities=13%  Similarity=0.165  Sum_probs=51.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HHhCCCc----EEE--ecCh-hhHHH-HHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LKGLGAD----EVF--TESQ-LEVKN-VKGL  191 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~~lg~~----~~~--~~~~-~~~~~-i~~~  191 (314)
                      .|+.+||+|+++++|.+.++.+...|++|+++.+    ++++.+.    ++..+..    ..+  |-.+ ...++ +.+.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r----~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGR----HAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence            5799999999999999999999999999988875    4444333    3344321    222  3322 22333 2222


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....|++|++++++|.
T Consensus        80 ~~~~g~iDilvnnAG~   95 (264)
T d1spxa_          80 LGKFGKLDILVNNAGA   95 (264)
T ss_dssp             HHHHSCCCEEEECCC-
T ss_pred             HHHhCCCCEeeccccc
Confidence            3333469999999884

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.0004  Score=54.30  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +|+++||+|+++++|.+.++.+...|++|+.+.+    +++   .+++.+...+.-.-...++.+.+..   |++|++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r----~~~---~l~~~~~~~~~~Dv~~~~~~~~~~~---g~iD~lVn   72 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICAR----NEE---LLKRSGHRYVVCDLRKDLDLLFEKV---KEVDILVL   72 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES----CHH---HHHHTCSEEEECCTTTCHHHHHHHS---CCCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC----CHH---HHHhcCCcEEEcchHHHHHHHHHHh---CCCcEEEe
Confidence            4799999999999999999999999999988874    443   3445555443311122334444433   35999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      ++|.
T Consensus        73 nAG~   76 (234)
T d1o5ia_          73 NAGG   76 (234)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9985

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.45  E-value=0.00028  Score=56.03  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=54.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCcEEE---ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGADEVF---TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+    ++++ .+..++++.....   |-.+ ..+++ +.+.....|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r----~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADI----NLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGS   79 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEES----CHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999999999988775    3444 3445667765432   2222 22222 2222222346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        80 iDilVnnAg~   89 (256)
T d1k2wa_          80 IDILVNNAAL   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEeeccc
Confidence            9999999995

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=3.5e-05  Score=60.70  Aligned_cols=96  Identities=16%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-------hHHHHHHHhcCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-------EVKNVKGLLANLPE  197 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-------~~~~i~~~~~~~g~  197 (314)
                      +.+|||+|+++++|.+.++.+...|++++.+.+.....         ......+..+..       ..+.+.... +.|+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~   71 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ---------ADSNILVDGNKNWTEQEQSILEQTASSL-QGSQ   71 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT---------SSEEEECCTTSCHHHHHHHHHHHHHHHH-TTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc---------ccccceeccccCchhHHHHHHHHHHHHh-cCCC
Confidence            35789999999999999999999999998887542100         111111211111       112233333 2346


Q ss_pred             CcEEEecCCCc---------------------------cHHHHHHhcccCCEEEEEcCCC
Q 021311          198 PALGFNCVGGN---------------------------SASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       198 ~d~v~d~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      +|++++++|..                           .....+..|+++|+++.+++..
T Consensus        72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~  131 (235)
T d1ooea_          72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  131 (235)
T ss_dssp             EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHH
Confidence            99999999841                           0134556778899999998543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.40  E-value=0.00039  Score=54.88  Aligned_cols=81  Identities=16%  Similarity=0.186  Sum_probs=50.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHH---HcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE--ecCh-hhHHH----HHHHhcCC
Q 021311          126 DSIVQNGATSIVGQCIIQIAR---HRGIHSINIIRDRAGSDEAKEKLKGLGADEVF--TESQ-LEVKN----VKGLLANL  195 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~---~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~-~~~~~----i~~~~~~~  195 (314)
                      ++|||+|+++++|+++++.+.   ..|++++++.+..+..++-.+..+.-+....+  |..+ +.+++    +++... .
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~-~   81 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK-D   81 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG-G
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh-c
Confidence            689999999999999886554   45889999987655444333333433333333  2222 22333    332222 2


Q ss_pred             CCCcEEEecCCC
Q 021311          196 PEPALGFNCVGG  207 (314)
Q Consensus       196 g~~d~v~d~~g~  207 (314)
                      +++|++++++|.
T Consensus        82 ~~iDiLvnNAg~   93 (248)
T d1snya_          82 QGLNVLFNNAGI   93 (248)
T ss_dssp             GCCSEEEECCCC
T ss_pred             CCcceEEeeccc
Confidence            359999999884

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.38  E-value=0.00033  Score=55.76  Aligned_cols=84  Identities=20%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEE-E--ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEV-F--TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~-~--~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+......+..+.+ ++.|.... +  |-.+ +.+++ +.+.....|+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999999999998887543333333332 44554432 2  2222 22333 2233333456


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        88 iDilVnnAg~   97 (260)
T d1h5qa_          88 ISGLIANAGV   97 (260)
T ss_dssp             EEEEEECCCC
T ss_pred             CcEecccccc
Confidence            9999999984

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.38  E-value=0.00052  Score=53.85  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCc-------EEEEecCCCCcHHHHHH----HHhCCCcEE-E--ecCh-hhHHH-HHH
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIH-------SINIIRDRAGSDEAKEK----LKGLGADEV-F--TESQ-LEVKN-VKG  190 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~-------vi~~~~~~~~~~~~~~~----~~~lg~~~~-~--~~~~-~~~~~-i~~  190 (314)
                      -+||+|+++++|.+.+..+...|++       ++.+.+    ++++.+.    +++.|.... +  |-.+ ...++ +.+
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r----~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~   78 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR----TAADLEKISLECRAEGALTDTITADISDMADVRRLTTH   78 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES----CHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeC----CHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence            3699999999999999888888987       555553    4444433    344554432 2  2222 22233 223


Q ss_pred             HhcCCCCCcEEEecCCCc--------------------------cHHHHHHhcc--cCCEEEEEcCCC
Q 021311          191 LLANLPEPALGFNCVGGN--------------------------SASKVLKFLS--QGGTMVTYGGMS  230 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~--------------------------~~~~~~~~l~--~~G~~v~~g~~~  230 (314)
                      .....|++|++++++|..                          ..+.+++.|+  .+|+++.+++..
T Consensus        79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~  146 (240)
T d2bd0a1          79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVA  146 (240)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechh
Confidence            333445699999999852                          1134556663  468999988543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.37  E-value=0.00028  Score=56.75  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=53.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEE---ecCh-hhHHH-HHHHhcCCCC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVF---TESQ-LEVKN-VKGLLANLPE  197 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~---~~~~-~~~~~-i~~~~~~~g~  197 (314)
                      .|+++||+|+++++|.++++.+...|++|+++.+    ++++.+.+ ++++.....   |..+ ...++ +.+.....|+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r----~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDK----SAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGK   79 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999999998875    45554433 455544322   2222 22222 2222233346


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +|++++++|.
T Consensus        80 idilvnnAG~   89 (276)
T d1bdba_          80 IDTLIPNAGI   89 (276)
T ss_dssp             CCEEECCCCC
T ss_pred             cccccccccc
Confidence            9999999983

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=0.00054  Score=53.62  Aligned_cols=74  Identities=12%  Similarity=0.033  Sum_probs=48.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE--EecChh-hHHH-HHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV--FTESQL-EVKN-VKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~--~~~~~~-~~~~-i~~~~~~~g~~d  199 (314)
                      .|+++||+|+++++|.+.++.+...|++++++.+.....          .....  .|-.+. .+++ +.+.....|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   75 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQGPVE   75 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh----------cCceEEEEecCCHHHHHHHHHHHHHhcCCce
Confidence            579999999999999999999999999999888643211          11122  222222 2222 222222223599


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      ++++++|.
T Consensus        76 iLVnnAG~   83 (237)
T d1uzma1          76 VLVSNAGL   83 (237)
T ss_dssp             EEEEECSC
T ss_pred             EEEeeecc
Confidence            99999985

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.35  E-value=0.00038  Score=55.21  Aligned_cols=78  Identities=18%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHH----HHHHhCCCcEE-E--ecChh-hHHH-HHHHhcCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK----EKLKGLGADEV-F--TESQL-EVKN-VKGLLANLP  196 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~----~~~~~lg~~~~-~--~~~~~-~~~~-i~~~~~~~g  196 (314)
                      +.+||+|+++++|++.+..+...|++++.+.+    ++++.    +.+++.|.... +  |-.+. ..++ +.+.....|
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r----~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADY----NDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            34699999999999999888889999988875    34443    33445565432 2  22222 2222 222333345


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|++++++|.
T Consensus        78 ~iDilVnnAG~   88 (255)
T d1gega_          78 GFDVIVNNAGV   88 (255)
T ss_dssp             CCCEEEECCCC
T ss_pred             CccEEEecccc
Confidence            69999999985

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.33  E-value=0.00024  Score=56.55  Aligned_cols=80  Identities=16%  Similarity=0.058  Sum_probs=51.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----Hh--CCCcEE-E--ecCh-hhHHHH-HHHh
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KG--LGADEV-F--TESQ-LEVKNV-KGLL  192 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~--lg~~~~-~--~~~~-~~~~~i-~~~~  192 (314)
                      .|+++||+|+++++|.+.++.+...|++|+++.+    ++++.+.+    ..  .+.... +  |-.+ ...+++ .+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r----~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~   78 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDV----SSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT   78 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999988875    44443332    22  222222 2  3222 223332 2222


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...|++|++++++|.
T Consensus        79 ~~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          79 ERFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HHhCCCCEEEECCcc
Confidence            223469999999983

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.31  E-value=0.00083  Score=53.26  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=55.5

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEE-EecCCC---CcHHHHHHHHhCCCcEEE---ecCh-hhHHHHHHHh
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN-IIRDRA---GSDEAKEKLKGLGADEVF---TESQ-LEVKNVKGLL  192 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~-~~~~~~---~~~~~~~~~~~lg~~~~~---~~~~-~~~~~i~~~~  192 (314)
                      .++|+.++||+|+++++|++.+..+...|+++++ +.+...   ..++..+.++..|....+   |-.+ ...+.+.+..
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence            5789999999999999999999888888996544 443211   122333445566765332   2222 2233444433


Q ss_pred             cCCCCCcEEEecCCC
Q 021311          193 ANLPEPALGFNCVGG  207 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~  207 (314)
                      ...+.+|.++.++|.
T Consensus        85 ~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          85 GDDVPLSAVFHAAAT   99 (259)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             ccccccccccccccc
Confidence            444459999999985

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.27  E-value=0.00072  Score=54.72  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=52.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HH-HhCCCcE-EEecC--h-hhHHH-HHHHhc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KL-KGLGADE-VFTES--Q-LEVKN-VKGLLA  193 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~-~~lg~~~-~~~~~--~-~~~~~-i~~~~~  193 (314)
                      .|+++||+|+++++|.+++..+...|++|+++.+.    .++.+    .+ ...|... .+..+  + +.++. +.....
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~----~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK----MDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC----HHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence            46999999999999999999999999999988853    33322    22 2334433 33222  2 22222 222333


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+++|++++++|.
T Consensus       100 ~~g~iDilvnnAg~  113 (294)
T d1w6ua_         100 VAGHPNIVINNAAG  113 (294)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             hccccchhhhhhhh
Confidence            33469999999985

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.25  E-value=0.00035  Score=55.25  Aligned_cols=78  Identities=23%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCC-Cc-EEE--ecCh-hhH----HHHHHHhc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLG-AD-EVF--TESQ-LEV----KNVKGLLA  193 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg-~~-~~~--~~~~-~~~----~~i~~~~~  193 (314)
                      .++|||+|+++++|+++++.+...|+  +++.+.+    ++++.+.+++.. .. +.+  |-.+ ..+    +.+.+..+
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R----~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATAR----DVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEES----SGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeC----CHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            38999999999999999988888887  4666664    445555555433 22 222  2222 122    33444444


Q ss_pred             CCCCCcEEEecCCC
Q 021311          194 NLPEPALGFNCVGG  207 (314)
Q Consensus       194 ~~g~~d~v~d~~g~  207 (314)
                      ..+ +|++++++|.
T Consensus        79 ~~~-idilinnAG~   91 (250)
T d1yo6a1          79 SDG-LSLLINNAGV   91 (250)
T ss_dssp             GGC-CCEEEECCCC
T ss_pred             CCC-eEEEEEcCcc
Confidence            433 9999999984

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.25  E-value=0.0017  Score=44.18  Aligned_cols=92  Identities=7%  Similarity=-0.121  Sum_probs=64.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE-ecChhhHHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      .|++|||.|+ |.+|..-++.+...|++++++...  .+++....+++-+....- .+.+.+   +    .   ++++|+
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~--~~~~~~~~~~~~~i~~~~~~~~~~d---l----~---~~~lv~   77 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGARLTVNALT--FIPQFTVWANEGMLTLVEGPFDETL---L----D---SCWLAI   77 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESS--CCHHHHHHHTTTSCEEEESSCCGGG---G----T---TCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecc--CChHHHHHHhcCCceeeccCCCHHH---h----C---CCcEEe
Confidence            4799999999 999999999999999998887754  244444454433322221 112211   1    1   499999


Q ss_pred             ecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          203 NCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       203 d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      .+++.... .......++.|..|.+..
T Consensus        78 ~at~d~~~n~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          78 AATDDDTVNQRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             ecCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            99988777 567788899999998763

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.22  E-value=0.00085  Score=53.63  Aligned_cols=83  Identities=12%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecC--h-hhHHH-HHHHhcCCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTES--Q-LEVKN-VKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~--~-~~~~~-i~~~~~~~g  196 (314)
                      .|+++||+|++|  ++|.+.++.+...|++|+++.++++ .+++.+.+ ...+...+...+  + ...++ +.+.....|
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            589999999866  7999999999999999998887543 23333333 333333333222  2 12222 333333445


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      ++|+++.++|.
T Consensus        83 ~id~lV~nag~   93 (274)
T d2pd4a1          83 SLDFIVHSVAF   93 (274)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCeEEeeccc
Confidence            69999999985

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00056  Score=55.50  Aligned_cols=81  Identities=23%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH----HH-hC----CCcEE-E--ecCh-hhHHH-H
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK----LK-GL----GADEV-F--TESQ-LEVKN-V  188 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~----~~-~l----g~~~~-~--~~~~-~~~~~-i  188 (314)
                      =.|+++||+|+++++|.+.++.+...|++|+++.+    ++++.+.    +. .+    +.... +  |-.+ ...++ +
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r----~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASR----KLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            36899999999999999999999999999998875    3443322    22 11    22222 2  2222 22222 2


Q ss_pred             HHHhcCCCCCcEEEecCCC
Q 021311          189 KGLLANLPEPALGFNCVGG  207 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~  207 (314)
                      .+.....|++|++++++|.
T Consensus        86 ~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHhCCeEEEEeeccc
Confidence            2222223369999999985

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.19  E-value=0.00074  Score=49.72  Aligned_cols=74  Identities=12%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhc
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLA  193 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~  193 (314)
                      .+.+ .++.++++|||+|+ |+.+.+++..++..|++.+.++..   +.++.+.+ ..++... ++....          
T Consensus         8 ~l~~-~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR---~~~ka~~L~~~~~~~~-~~~~~~----------   71 (167)
T d1npya1           8 LIEK-YHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYAR---NVKTGQYLAALYGYAY-INSLEN----------   71 (167)
T ss_dssp             HHHH-TTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECS---CHHHHHHHHHHHTCEE-ESCCTT----------
T ss_pred             HHHH-cCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecc---cHHHHHHHHHhhhhhh-hhcccc----------
Confidence            3433 66778899999999 999999999999999865555532   55554444 3454432 221111          


Q ss_pred             CCCCCcEEEecCC
Q 021311          194 NLPEPALGFNCVG  206 (314)
Q Consensus       194 ~~g~~d~v~d~~g  206 (314)
                       . .+|++++|+.
T Consensus        72 -~-~~DliINaTp   82 (167)
T d1npya1          72 -Q-QADILVNVTS   82 (167)
T ss_dssp             -C-CCSEEEECSS
T ss_pred             -c-chhhheeccc
Confidence             1 4999999986

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.00037  Score=56.30  Aligned_cols=104  Identities=10%  Similarity=0.013  Sum_probs=66.2

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH----HHHhCCCcEEEecChhhHHH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE----KLKGLGADEVFTESQLEVKN  187 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~~~~~~~~~~~  187 (314)
                      -+..+.+.+++++|++||=+|+  +.|..+..+|+..|+++++++-    +++..+    .++..|....+.....+.  
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGC--G~G~~~~~~a~~~g~~v~git~----s~~q~~~a~~~~~~~~l~~~v~~~~~d~--  120 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGC--GWGSTMRHAVAEYDVNVIGLTL----SENQYAHDKAMFDEVDSPRRKEVRIQGW--  120 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEES----CHHHHHHHHHHHHHSCCSSCEEEEECCG--
T ss_pred             HHHHHHHhcCCCCCCEEEEecC--cchHHHHHHHHhcCcceeeccc----hHHHHHHHHHHHHhhccchhhhhhhhcc--
Confidence            3455667789999999999998  3456678899999999998884    455433    344555442221111110  


Q ss_pred             HHHHhcCCCCCcEEEecCCCc----------------cHHHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVGGN----------------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~----------------~~~~~~~~l~~~G~~v~~g  227 (314)
                       .   ...+.||.|+..-..+                .+..+.++|+|+|++++-.
T Consensus       121 -~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         121 -E---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             -G---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             -c---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence             0   1112599886533321                2367889999999998643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.10  E-value=0.00087  Score=51.76  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=63.2

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCcEEEecChhhHHHHHHHhc
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGADEVFTESQLEVKNVKGLLA  193 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~i~~~~~  193 (314)
                      +...+++|++||-+|++  .|+.++.+++. +.+|+++-.    +++..+.+++    .....++..+...     .+ .
T Consensus        64 ~~L~l~~g~~VLdIG~G--sGy~ta~La~l-~~~V~aiE~----~~~~~~~A~~~~~~~~nv~~~~~d~~~-----g~-~  130 (224)
T d1vbfa_          64 DELDLHKGQKVLEIGTG--IGYYTALIAEI-VDKVVSVEI----NEKMYNYASKLLSYYNNIKLILGDGTL-----GY-E  130 (224)
T ss_dssp             HHTTCCTTCEEEEECCT--TSHHHHHHHHH-SSEEEEEES----CHHHHHHHHHHHTTCSSEEEEESCGGG-----CC-G
T ss_pred             HHhhhcccceEEEecCC--CCHHHHHHHHH-hcccccccc----cHHHHHHHHHHHhcccccccccCchhh-----cc-h
Confidence            45789999999999983  47777777775 567777663    5666665543    2222223222111     00 1


Q ss_pred             CCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          194 NLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ..+.||.|+-+.+.+.. ...++.|++||++|...
T Consensus       131 ~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         131 EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEEE
Confidence            11259999877666555 67889999999999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00096  Score=49.25  Aligned_cols=99  Identities=14%  Similarity=0.049  Sum_probs=58.3

Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCC---CcEEEecChhhHHHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLG---ADEVFTESQLEVKNVK  189 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg---~~~~~~~~~~~~~~i~  189 (314)
                      .+|.+..-..+|++|||.|+ |+.+.+++..+...|+++.++.|    +.++.+. ++.+.   ....+...+.      
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nR----t~~ka~~l~~~~~~~~~~~~~~~~~~------   75 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNR----TVSRAEELAKLFAHTGSIQALSMDEL------   75 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----SHHHHHHHHHHTGGGSSEEECCSGGG------
T ss_pred             HHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccc----hHHHHHHHHHHHhhcccccccccccc------
Confidence            34555343467899999999 98999999888899998555554    4444333 33333   2222222211      


Q ss_pred             HHhcCCCCCcEEEecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                         ... .+|++++|+.....    ..-...++++..++.+-
T Consensus        76 ---~~~-~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~v  113 (170)
T d1nyta1          76 ---EGH-EFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMF  113 (170)
T ss_dssp             ---TTC-CCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             ---ccc-ccceeecccccCcccCCCCCcHHHhccCcEEEEee
Confidence               111 49999999865332    11123455666555554

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.07  E-value=0.0095  Score=42.44  Aligned_cols=99  Identities=15%  Similarity=0.225  Sum_probs=67.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhc----------
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLA----------  193 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~----------  193 (314)
                      ++|.|.|++|++|..++.+.+..  ..++++++..+ ..+.-.+.++++.+.++.-.++...+.+.....          
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~-N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR-NVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS-CHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC-CHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence            78999999999999999999875  57888777553 244556677889998887665443333322221          


Q ss_pred             -------CCCCCcEEEecCCC-ccHHHHHHhcccCCEEEEE
Q 021311          194 -------NLPEPALGFNCVGG-NSASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       194 -------~~g~~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  226 (314)
                             .. .+|+++.+..+ .-+.-.+..++.+-++.+.
T Consensus        82 ~~l~~~~~~-~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA  121 (150)
T d1r0ka2          82 DALVEAAMM-GADWTMAAIIGCAGLKATLAAIRKGKTVALA  121 (150)
T ss_dssp             HHHHHHHTS-CCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             cchheeccc-ccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence                   11 37888887655 4457777777777665543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0006  Score=52.02  Aligned_cols=96  Identities=19%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      .++|+|+||+|.+|..++..+...|.++.++++.    .++.......+. .++..+-.+.+.+.+...+   .|+||.+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~----~~~~~~~~~~~~-~~~~gD~~d~~~l~~al~~---~d~vi~~   74 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD----SSRLPSEGPRPA-HVVVGDVLQAADVDKTVAG---QDAVIVL   74 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC----GGGSCSSSCCCS-EEEESCTTSHHHHHHHHTT---CSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC----hhhccccccccc-ccccccccchhhHHHHhcC---CCEEEEE
Confidence            4789999999999999998888889999999963    333222222333 3343443344556555554   8999999


Q ss_pred             CCCcc-----------HHHHHHhcccCC--EEEEEcC
Q 021311          205 VGGNS-----------ASKVLKFLSQGG--TMVTYGG  228 (314)
Q Consensus       205 ~g~~~-----------~~~~~~~l~~~G--~~v~~g~  228 (314)
                      +|...           ...+++.++..|  +++.+++
T Consensus        75 ~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          75 LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             eccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            98521           134555555543  7887764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00042  Score=55.76  Aligned_cols=101  Identities=10%  Similarity=0.106  Sum_probs=66.2

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcE--EEecChhhH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADE--VFTESQLEV  185 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~--~~~~~~~~~  185 (314)
                      -...+.+.++++||++||=+|+  +.|..++.+|+..|+++++++-    +++..+.++    +.|...  .+...+   
T Consensus        50 k~~~~~~~l~l~~G~~VLDiGC--G~G~~a~~~a~~~g~~v~git~----s~~Q~~~a~~~~~~~g~~~~v~~~~~d---  120 (285)
T d1kpga_          50 KIDLALGKLGLQPGMTLLDVGC--GWGATMMRAVEKYDVNVVGLTL----SKNQANHVQQLVANSENLRSKRVLLAG---  120 (285)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEES----CHHHHHHHHHHHHTCCCCSCEEEEESC---
T ss_pred             HHHHHHHHcCCCCCCEEEEecC--cchHHHHHHHhcCCcceEEEec----cHHHHHHHHHHHHhhhhhhhhHHHHhh---
Confidence            3455667789999999999998  4678888999999999999984    566555553    333221  111111   


Q ss_pred             HHHHHHhcCCCCCcEEEe-----cCCCcc----HHHHHHhcccCCEEEEE
Q 021311          186 KNVKGLLANLPEPALGFN-----CVGGNS----ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d-----~~g~~~----~~~~~~~l~~~G~~v~~  226 (314)
                        .+.+ .  +.+|.++.     ..+...    +..+.+.|+|+|++++-
T Consensus       121 --~~~~-~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         121 --WEQF-D--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             --GGGC-C--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             --hhcc-c--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence              1111 1  24888754     333332    36788899999999863

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0028  Score=49.99  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=53.9

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhCCCcEEEecChh---hHH-HHHHHhcCCC
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGLGADEVFTESQL---EVK-NVKGLLANLP  196 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~---~~~-~i~~~~~~~g  196 (314)
                      .|+++||+|+++  ++|.+.+..+...|++|+++.+.+. ..++ .+.....+.......+..   ... ...+.....+
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            689999999987  7889999889999999998876533 2333 333444555544433322   222 2333344445


Q ss_pred             CCcEEEecCCC
Q 021311          197 EPALGFNCVGG  207 (314)
Q Consensus       197 ~~d~v~d~~g~  207 (314)
                      .+|+.+++++.
T Consensus        83 ~~d~~v~~a~~   93 (258)
T d1qsga_          83 KFDGFVHSIGF   93 (258)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccceEEEeecc
Confidence            69999998764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.00051  Score=55.17  Aligned_cols=103  Identities=11%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCcEEEecChhhHHH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGADEVFTESQLEVKN  187 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~~~~~~~~  187 (314)
                      -+..+.+.++++||++||=+|++  .|..+..+++..|++++++.-    +++..+.+    ++.|....+.....+   
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG--~G~~a~~~a~~~g~~v~gi~l----s~~q~~~a~~~~~~~~l~~~~~~~~~d---  110 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCG--WGTTMRRAVERFDVNVIGLTL----SKNQHARCEQVLASIDTNRSRQVLLQG---  110 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCT--TSHHHHHHHHHHCCEEEEEES----CHHHHHHHHHHHHTSCCSSCEEEEESC---
T ss_pred             HHHHHHHHcCCCCCCEEEEecCC--chHHHHHHHHhCceeEEEecc----hHHHHHHHHHHHHhhccccchhhhhhh---
Confidence            45566677889999999999983  345667788888999988884    55555554    344432111111101   


Q ss_pred             HHHHhcCCCCCcEEEecC-----CCcc----HHHHHHhcccCCEEEEE
Q 021311          188 VKGLLANLPEPALGFNCV-----GGNS----ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~-----g~~~----~~~~~~~l~~~G~~v~~  226 (314)
                      .+.. .  +.+|.|+..-     +.+.    +..+.++|+|+|++++-
T Consensus       111 ~~~~-~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         111 WEDF-A--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             GGGC-C--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhhh-c--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence            1111 1  2599886433     3232    36778999999999874

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.92  E-value=0.0024  Score=52.78  Aligned_cols=84  Identities=10%  Similarity=0.074  Sum_probs=53.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|||+|++|-+|..+++.+...|.+|+++.+...+.....+..+....-..+..+-.+.+.+.+..... .+|+++.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~-~~~~v~~   85 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF-QPEIVFH   85 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhc-hhhhhhh
Confidence            579999999999999999999999999999988765433333222221111222222212223344433333 3899999


Q ss_pred             cCCCc
Q 021311          204 CVGGN  208 (314)
Q Consensus       204 ~~g~~  208 (314)
                      +++..
T Consensus        86 ~aa~~   90 (356)
T d1rkxa_          86 MAAQP   90 (356)
T ss_dssp             CCSCC
T ss_pred             hhccc
Confidence            88753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.0089  Score=47.06  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=63.2

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHh----C---CCc-EEEecChhhHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKG----L---GAD-EVFTESQLEVK  186 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~----l---g~~-~~~~~~~~~~~  186 (314)
                      ...++++||++||=.|+  +.|.++..+|+..|.  +++++- .   +++..+.+++    +   ..+ ..+...+    
T Consensus        89 i~~l~i~PG~~VLE~G~--GsG~lt~~La~~vgp~G~V~~~d-~---~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d----  158 (264)
T d1i9ga_          89 VHEGDIFPGARVLEAGA--GSGALTLSLLRAVGPAGQVISYE-Q---RADHAEHARRNVSGCYGQPPDNWRLVVSD----  158 (264)
T ss_dssp             HHHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTSEEEEEC-S---CHHHHHHHHHHHHHHHTSCCTTEEEECSC----
T ss_pred             HHHhCCCCCCEEEecCc--CCcHHHHHHHHhhCCCcEEEEec-C---CHHHHHHHHHhhhhhccCCCceEEEEecc----
Confidence            34589999999999987  348888889998875  454444 2   6666666642    1   111 2222211    


Q ss_pred             HHHHHhcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          187 NVKGLLANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                       +.+.....+.+|.||-....+  ...++.+.|+|+|+++.+.
T Consensus       159 -~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         159 -LADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             -GGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             -cccccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence             111111112499887666553  3478999999999998764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.011  Score=42.57  Aligned_cols=102  Identities=15%  Similarity=0.084  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhhcC-CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHH
Q 021311          110 LTALRMLEDFTTL-NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNV  188 (314)
Q Consensus       110 ~ta~~~l~~~~~~-~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i  188 (314)
                      .+.+.++.+..++ -.|++++|.|- |-+|...++.++.+|++|+++-.    ++-+.-.+.--|.. +.        .+
T Consensus         8 ~S~~~~~~r~t~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~----dp~~al~A~~dG~~-v~--------~~   73 (163)
T d1li4a1           8 ESLIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEI----DPINALQAAMEGYE-VT--------TM   73 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTCE-EC--------CH
T ss_pred             hhHHHHHHHHhCceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeec----ccchhHHhhcCceE-ee--------eh
Confidence            4466677665654 58999999998 99999999999999999988773    33332222222322 21        11


Q ss_pred             HHHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          189 KGLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       189 ~~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      .+...   ..|+++-++|....  .+-++.|+++.-+..+|.
T Consensus        74 ~~a~~---~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Gh  112 (163)
T d1li4a1          74 DEACQ---EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGH  112 (163)
T ss_dssp             HHHTT---TCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSS
T ss_pred             hhhhh---hccEEEecCCCccchhHHHHHhccCCeEEEEecc
Confidence            12222   38999999998543  899999999999988883

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0013  Score=43.18  Aligned_cols=85  Identities=15%  Similarity=0.138  Sum_probs=53.1

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|+|.|. |..|+++++++...|+++++.-+..  .++..+.++. +....+.....  ..+.       .+|.++-
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~--~~~~~~~~~~-~~~~~~~~~~~--~~~~-------~~d~vi~   70 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRM--TPPGLDKLPE-AVERHTGSLND--EWLM-------AADLIVA   70 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSS--SCTTGGGSCT-TSCEEESBCCH--HHHH-------HCSEEEE
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCc--CchhHHHHhh-ccceeecccch--hhhc-------cCCEEEE
Confidence            4789999999 9999999999999999998887542  2222222222 22223322221  1121       3899998


Q ss_pred             cCCCccHHHHHHhcccCC
Q 021311          204 CVGGNSASKVLKFLSQGG  221 (314)
Q Consensus       204 ~~g~~~~~~~~~~l~~~G  221 (314)
                      +-|-+.....++..+..|
T Consensus        71 SPGi~~~~~~~~~a~~~g   88 (93)
T d2jfga1          71 SPGIALAHPSLSAAADAG   88 (93)
T ss_dssp             CTTSCTTSHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHcC
Confidence            888776655554444433

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0084  Score=47.96  Aligned_cols=104  Identities=12%  Similarity=0.118  Sum_probs=59.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC--CCCcHHHH-HHHHhC---CCc-EEE--ecChh-hHHHHHHHhcCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD--RAGSDEAK-EKLKGL---GAD-EVF--TESQL-EVKNVKGLLANL  195 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~--~~~~~~~~-~~~~~l---g~~-~~~--~~~~~-~~~~i~~~~~~~  195 (314)
                      +-|||+|+++++|.+++..+...|++++.+...  +....++. +.++++   +.. ..+  |-.+. ..+.+.+.... 
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~-   81 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE-   81 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT-
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc-
Confidence            346899999999999999999999986554321  10112222 233333   322 222  22222 23333333222 


Q ss_pred             CCCcEEEecCCCcc--------------------------HHHHHHhcc--cCCEEEEEcCCC
Q 021311          196 PEPALGFNCVGGNS--------------------------ASKVLKFLS--QGGTMVTYGGMS  230 (314)
Q Consensus       196 g~~d~v~d~~g~~~--------------------------~~~~~~~l~--~~G~~v~~g~~~  230 (314)
                      |.+|++++++|...                          ...++..|.  .+|++|.+++..
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~  144 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVG  144 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGG
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechh
Confidence            46999999998520                          133455553  469999998653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.67  E-value=0.0046  Score=50.45  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=52.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCC-CCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDR-AGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|||+||+|-+|...+..+...|.+|+++.+-. .....+...+...+.-..+..+-.+.+.+.+...+. ++|+||.++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~-~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY-MPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH-CCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhc-CCceEEeec
Confidence            699999999999999988888899998864321 123344445555544444433333334455544443 389999998


Q ss_pred             CC
Q 021311          206 GG  207 (314)
Q Consensus       206 g~  207 (314)
                      +.
T Consensus        81 a~   82 (338)
T d1orra_          81 GQ   82 (338)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00048  Score=53.42  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=59.8

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHH----hCCC-------cEEEecChhhHHH
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLK----GLGA-------DEVFTESQLEVKN  187 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~----~lg~-------~~~~~~~~~~~~~  187 (314)
                      .++||++||-.|+  +.|+.++.+|+..|.  +|+++-.    +++..+.++    +.+.       ......+...   
T Consensus        73 ~l~~g~~VLdiG~--GsGy~ta~la~l~~~~g~V~~ie~----~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~---  143 (224)
T d1i1na_          73 QLHEGAKALDVGS--GSGILTACFARMVGCTGKVIGIDH----IKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM---  143 (224)
T ss_dssp             TSCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEES----CHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG---
T ss_pred             ccCCCCeEEEecC--CCCHHHHHHHHHhCCCceEEEEcC----CHHHHHHHHHhccccCcccccccceEEEEeeccc---
Confidence            7899999999998  348888888887764  5665542    455444442    2221       1112111110   


Q ss_pred             HHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                        ..... +.||+|+-+.+.+.. ...++.|++||++|..-
T Consensus       144 --~~~~~-~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         144 --GYAEE-APYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             --CCGGG-CCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             --ccchh-hhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEE
Confidence              01111 249999987776555 78889999999999854

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0035  Score=49.14  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=38.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD  175 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~  175 (314)
                      +|+.+||+|+++++|.+.++.+...|++++++.+..+   ...+.+++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~---~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS---GGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS---SHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH---HHHHHHHHhCCC
Confidence            6899999999999999999999999999988886532   223344555544

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.59  E-value=0.0055  Score=48.43  Aligned_cols=82  Identities=15%  Similarity=0.062  Sum_probs=53.1

Q ss_pred             CCCCEEEEcCCC--cHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHH-HHHhCCCcE---EEecChh-----hHHHHHHH
Q 021311          123 NSGDSIVQNGAT--SIVGQCIIQIARHRGIHSINIIRDRAGSDEAKE-KLKGLGADE---VFTESQL-----EVKNVKGL  191 (314)
Q Consensus       123 ~~~~~vlI~g~~--g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~-~~~~lg~~~---~~~~~~~-----~~~~i~~~  191 (314)
                      =.|+++||+|++  .++|.+.++.+...|++++.+.+.   .++..+ ..+.++...   ..|-.+.     ..+.+.+.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~---~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD---RLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC---hHHHHHHHHHHcCCceeeEeeecccccccccccchhhhc
Confidence            368999999964  469999999899999999887753   333323 334455432   2222221     12445555


Q ss_pred             hcCCCCCcEEEecCCC
Q 021311          192 LANLPEPALGFNCVGG  207 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~  207 (314)
                      ....+.+|++++++|.
T Consensus        81 ~~~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          81 IGAGNKLDGVVHSIGF   96 (268)
T ss_dssp             HCTTCCEEEEEECCCC
T ss_pred             cccCCCcceeeecccc
Confidence            5555569999999983

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.017  Score=42.70  Aligned_cols=108  Identities=14%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHH-HHHHHhC----CCc-EEEecChhhHHH
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEA-KEKLKGL----GAD-EVFTESQLEVKN  187 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~-~~~~~~l----g~~-~~~~~~~~~~~~  187 (314)
                      +++....---.+++|+|.|+ |+.+.+++..+...|++.+.++..+....++ ...++++    ... .+.+..+  .+.
T Consensus         7 ~~l~~~~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~   83 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD--QQA   83 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHH
T ss_pred             HHHHHcCCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc--ccc
Confidence            34444322236789999999 8899999988888999777766543222222 2233332    211 1222222  123


Q ss_pred             HHHHhcCCCCCcEEEecCCCccH-------HHHHHhcccCCEEEEEc
Q 021311          188 VKGLLANLPEPALGFNCVGGNSA-------SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~~~~-------~~~~~~l~~~G~~v~~g  227 (314)
                      +.+.+.   .+|++++|+.-...       ..-+..++++..++.+.
T Consensus        84 ~~~~~~---~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          84 FAEALA---SADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV  127 (182)
T ss_dssp             HHHHHH---TCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred             hhhhhc---ccceeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence            333333   39999999864221       11235567778877775

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.53  E-value=0.0047  Score=48.34  Aligned_cols=99  Identities=13%  Similarity=0.071  Sum_probs=61.6

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHH----hCC-CcEEEecChhhHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLK----GLG-ADEVFTESQLEVKNVKG  190 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~----~lg-~~~~~~~~~~~~~~i~~  190 (314)
                      ..++++||++||=.|+++  |.++..+|+..|.  +++++- .   +++..+.++    +++ ...+--...+    +.+
T Consensus        79 ~~l~i~pG~rVLEiG~Gs--G~lt~~la~~v~~~g~V~~vD-~---~e~~~~~A~~n~~~~~~~~nv~~~~~D----i~~  148 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGVGS--GNMSSYILYALNGKGTLTVVE-R---DEDNLKKAMDNLSEFYDIGNVRTSRSD----IAD  148 (250)
T ss_dssp             --CCCCTTCEEEEECCTT--SHHHHHHHHHHTTSSEEEEEC-S---CHHHHHHHHHHHHTTSCCTTEEEECSC----TTT
T ss_pred             HHcCCCCcCEEEEeeeeC--cHHHHHHHHHhCCCcEEEEEE-C---CHHHHHHHHHHHHHhcCCCceEEEEee----eec
Confidence            348899999999999833  7777788887664  455554 2   666666654    332 2222111111    112


Q ss_pred             HhcCCCCCcEEEecCCCc--cHHHHHHhcccCCEEEEEc
Q 021311          191 LLANLPEPALGFNCVGGN--SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~--~~~~~~~~l~~~G~~v~~g  227 (314)
                      ..... .||.||-....+  .+.++.+.|+|||+++.+.
T Consensus       149 ~~~~~-~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         149 FISDQ-MYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             CCCSC-CEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             ccccc-eeeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            22232 499998655543  4589999999999999764

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0043  Score=50.55  Aligned_cols=99  Identities=15%  Similarity=0.211  Sum_probs=59.8

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHh----CC-----------CcE-EE-
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKG----LG-----------ADE-VF-  178 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~----lg-----------~~~-~~-  178 (314)
                      ..++++||++||=.|+  +.|.+++.+|+..|.  +++++-.    +++..+.+++    ++           .+. .+ 
T Consensus        92 ~~l~i~pG~rVLE~Gt--GsG~lt~~LAr~vg~~G~V~t~E~----~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~  165 (324)
T d2b25a1          92 SMMDINPGDTVLEAGS--GSGGMSLFLSKAVGSQGRVISFEV----RKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  165 (324)
T ss_dssp             HHHTCCTTCEEEEECC--TTSHHHHHHHHHHCTTCEEEEEES----SHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHhCCCCCCEEEEecc--cccHHHHHHHHHhCCCcEEEEecC----CHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence            4589999999999987  338888999998875  5665552    5666655532    11           111 11 


Q ss_pred             ecChh-hHHHHHHHhcCCCCCcEEEecCCC--ccHHHHHHhcccCCEEEEEc
Q 021311          179 TESQL-EVKNVKGLLANLPEPALGFNCVGG--NSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       179 ~~~~~-~~~~i~~~~~~~g~~d~v~d~~g~--~~~~~~~~~l~~~G~~v~~g  227 (314)
                      ..+-. ....+    ... .+|.||--...  ....++.+.|+|||+++.+.
T Consensus       166 ~~di~~~~~~~----~~~-~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         166 HKDISGATEDI----KSL-TFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             ESCTTCCC------------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             ecchhhccccc----CCC-CcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            11110 00111    111 38888743443  34589999999999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.016  Score=45.32  Aligned_cols=93  Identities=19%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCcE-EEecChhhHHHHHHHhcCC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGADE-VFTESQLEVKNVKGLLANL  195 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~~-~~~~~~~~~~~i~~~~~~~  195 (314)
                      ..++|++||=.|+++  |..++.++ ..|++++++- .   ++...+.+    +..+... ++..+.      .......
T Consensus       117 ~~~~g~~VLDiGcGs--G~l~i~aa-~~g~~V~gvD-i---s~~av~~A~~na~~n~~~~~~~~~d~------~~~~~~~  183 (254)
T d2nxca1         117 HLRPGDKVLDLGTGS--GVLAIAAE-KLGGKALGVD-I---DPMVLPQAEANAKRNGVRPRFLEGSL------EAALPFG  183 (254)
T ss_dssp             HCCTTCEEEEETCTT--SHHHHHHH-HTTCEEEEEE-S---CGGGHHHHHHHHHHTTCCCEEEESCH------HHHGGGC
T ss_pred             hcCccCEEEEcccch--hHHHHHHH-hcCCEEEEEE-C---ChHHHHHHHHHHHHcCCceeEEeccc------ccccccc
Confidence            368999999999833  56666554 4688877654 3   45544444    3344332 222221      1112222


Q ss_pred             CCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          196 PEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       196 g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                       +||+|+.+.....    .+.+.+.|+|||++++.|
T Consensus       184 -~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         184 -PFDLLVANLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             -CEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccchhhhccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence             5999997655433    256778999999999765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.0038  Score=45.90  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=55.5

Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhC---CCcEEEecChhhHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGL---GADEVFTESQLEVKNVKG  190 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l---g~~~~~~~~~~~~~~i~~  190 (314)
                      ++.+..-..++++|+|.|+ |+.+.+++..+...+.++.++.|    +.++.+.+ +.+   +.......++.       
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR----~~~~a~~l~~~~~~~~~~~~~~~~~~-------   75 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANR----TFSKTKELAERFQPYGNIQAVSMDSI-------   75 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEES----SHHHHHHHHHHHGGGSCEEEEEGGGC-------
T ss_pred             HHHHcCCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccc----hHHHHHHHHHHHhhccccchhhhccc-------
Confidence            3444333457899999999 88899988877776656665654    44443333 333   22222222211       


Q ss_pred             HhcCCCCCcEEEecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          191 LLANLPEPALGFNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                         ....+|++++|+.....    ......++++..++.+.
T Consensus        76 ---~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          76 ---PLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             ---CCSCCSEEEECCCC-------CCCHHHHHHCSCEEESC
T ss_pred             ---cccccceeeecccccccccccchhhhhhcccceeeeee
Confidence               11149999999886432    12234456666666654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0011  Score=51.98  Aligned_cols=104  Identities=21%  Similarity=0.253  Sum_probs=65.9

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc--EEEecChhhH
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD--EVFTESQLEV  185 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~--~~~~~~~~~~  185 (314)
                      .+..+...++++||++||=+|++  .|..+..+++..|++++++--    ++...+.++    ..|..  ..+...+   
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGCG--~G~~~~~la~~~~~~v~GvD~----s~~~~~~ar~~~~~~gl~~~v~~~~~d---   91 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGSG--SGEMLCTWARDHGITGTGIDM----SSLFTAQAKRRAEELGVSERVHFIHND---   91 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCT--TCHHHHHHHHHTCCEEEEEES----CHHHHHHHHHHHHHTTCTTTEEEEESC---
T ss_pred             HHHHHHHHcCCCCCCEEEEEcCC--CCHHHHHHHHhcCCEEEEEec----ccchhhHHHHHHHHhhccccchhhhhH---
Confidence            34556677899999999999983  356677788888998877762    666555543    34432  1121111   


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCc-------cHHHHHHhcccCCEEEEEc
Q 021311          186 KNVKGLLANLPEPALGFNCVGGN-------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g  227 (314)
                        +.++... +.||+|+-.....       .+..+.+.|+|||+++...
T Consensus        92 --~~~~~~~-~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          92 --AAGYVAN-EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             --CTTCCCS-SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --Hhhcccc-CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence              1112222 2599998644331       2367778999999998753

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.03  Score=39.72  Aligned_cols=98  Identities=13%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHH-------------
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKG-------------  190 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~-------------  190 (314)
                      ++|.|.|++|++|..++.+.+..  .+++..++..+ ..+.-.+.+.++...+++-.++...+.++.             
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~-N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK-NVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS-CHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC-cHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            47899999999999999999987  46787777543 244555677889998887666543322222             


Q ss_pred             -------HhcCCCCCcEEEecCCCc-cHHHHHHhcccCCEEEE
Q 021311          191 -------LLANLPEPALGFNCVGGN-SASKVLKFLSQGGTMVT  225 (314)
Q Consensus       191 -------~~~~~g~~d~v~d~~g~~-~~~~~~~~l~~~G~~v~  225 (314)
                             +.... ++|+|+....+- ...-.+..++.+=++.+
T Consensus        81 g~~~l~~~~~~~-~~D~vi~AI~G~aGL~~t~~aik~gk~iaL  122 (151)
T d1q0qa2          81 GQQAACDMAALE-DVDQVMAAIVGAAGLLPTLAAIRAGKTILL  122 (151)
T ss_dssp             SHHHHHHHHTCT-TCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             ChHHHHHHhcCC-CCCEEEEecCcccHHHHHHHHHhcCCeEEE
Confidence                   22222 378888877663 34666677776665443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.44  E-value=0.0072  Score=44.67  Aligned_cols=93  Identities=10%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecC-------hhhHHHHHHHhcCCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTES-------QLEVKNVKGLLANLPE  197 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~-------~~~~~~i~~~~~~~g~  197 (314)
                      ++++.|+|+ |.+|++.+..+...|.+|..+.+    ++++.+.+++.+........       ......+.+...   .
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~   72 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDI----DAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK---D   72 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT---T
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc---C
Confidence            478999999 99999999999999999988874    67777777655532221110       000011222222   3


Q ss_pred             CcEEEecCCCccHHHHH----HhcccCCEEEE
Q 021311          198 PALGFNCVGGNSASKVL----KFLSQGGTMVT  225 (314)
Q Consensus       198 ~d~v~d~~g~~~~~~~~----~~l~~~G~~v~  225 (314)
                      .|++|-|+........+    ..+.++-.++.
T Consensus        73 aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          73 ADVILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             CSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            99999999887654444    44455555543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.41  E-value=0.018  Score=39.99  Aligned_cols=91  Identities=14%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|+|+|+ |.+|...++.+...|..++++..    ++++.+.+. +++.. ++..+..+.+.+++..-.  .+|.++-++
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~----d~~~~~~~~~~~~~~-vi~Gd~~~~~~l~~~~i~--~a~~vv~~t   73 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDI----DKDICKKASAEIDAL-VINGDCTKIKTLEDAGIE--DADMYIAVT   73 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEES----CHHHHHHHHHHCSSE-EEESCTTSHHHHHHTTTT--TCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecC----Chhhhhhhhhhhhhh-hccCcccchhhhhhcChh--hhhhhcccC
Confidence            6899999 99999999999999988877763    677777665 45544 454444343444443222  499999988


Q ss_pred             CCccH----HHHHHhcccCCEEEEE
Q 021311          206 GGNSA----SKVLKFLSQGGTMVTY  226 (314)
Q Consensus       206 g~~~~----~~~~~~l~~~G~~v~~  226 (314)
                      ..+..    ....+.+.+. +++..
T Consensus        74 ~~d~~N~~~~~~~k~~~~~-~iI~~   97 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGIN-KTIAR   97 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTCC-CEEEE
T ss_pred             CcHHHHHHHHHHHHHcCCc-eEEEE
Confidence            88654    2333445554 44433

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.39  E-value=0.0033  Score=48.42  Aligned_cols=95  Identities=18%  Similarity=0.197  Sum_probs=56.7

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHc---C----CcEEEEecCCCCcHHHHHHHHh---------CC--CcEEEecCh
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHR---G----IHSINIIRDRAGSDEAKEKLKG---------LG--ADEVFTESQ  182 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~---g----~~vi~~~~~~~~~~~~~~~~~~---------lg--~~~~~~~~~  182 (314)
                      .++++++||.+|+++  |+.++.+++..   |    .+|+++-.    .++..+.+++         .+  .-.++..+.
T Consensus        77 ~l~~g~~VLeIGtGs--GY~ta~la~l~g~~g~~~~~~V~~iE~----~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~  150 (223)
T d1r18a_          77 HLKPGARILDVGSGS--GYLTACFYRYIKAKGVDADTRIVGIEH----QAELVRRSKANLNTDDRSMLDSGQLLIVEGDG  150 (223)
T ss_dssp             TCCTTCEEEEESCTT--SHHHHHHHHHHHHSCCCTTCEEEEEES----CHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred             ccCCCCeEEEecCCC--CHHHHHHHHHhhhccCCcccEEEEEec----CHHHHHHHHHhhhhcchhhcCccEEEEEeccc
Confidence            799999999999833  66665555544   4    25666653    4444433321         11  112222221


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEc
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      ..     ..... +.||.|+-+.+-+.. ...++.|++||++|..-
T Consensus       151 ~~-----~~~~~-~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         151 RK-----GYPPN-APYNAIHVGAAAPDTPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             GG-----CCGGG-CSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cc-----ccccc-cceeeEEEEeechhchHHHHHhcCCCcEEEEEE
Confidence            10     01111 259999887777655 77889999999998854

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.0054  Score=50.48  Aligned_cols=80  Identities=8%  Similarity=0.071  Sum_probs=50.8

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +.|||+||+|-+|..++..+...|.+|+++.+............   ..-+... +..+-.+.+.+.......+ +|+||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~-~~~Dl~d~~~l~~~~~~~~-~d~Vi   79 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPF-YEVDLCDRKGLEKVFKEYK-IDSVI   79 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCE-EECCTTCHHHHHHHHHHSC-CCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeE-EEeecCCHHHHHHHHhccC-CCEEE
Confidence            67999999999999999888888999988754322222322222   2223322 2222223445555554444 99999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .+++.
T Consensus        80 hlAa~   84 (347)
T d1z45a2          80 HFAGL   84 (347)
T ss_dssp             ECCSC
T ss_pred             Ecccc
Confidence            99875

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.011  Score=48.36  Aligned_cols=79  Identities=9%  Similarity=0.035  Sum_probs=50.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +|||+||+|-+|..++..+...|.+|+++.+............   ..-... .+..+-.+.+.+.+.....+ +|+||.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~~~l~~~~~~~~-~d~ViH   79 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPT-FVEGDIRNEALMTEILHDHA-IDTVIH   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCE-EEECCTTCHHHHHHHHHHTT-CSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCE-EEEeecCCHHHHHHHHhccC-CCEEEE
Confidence            5999999999999999999889999988764322233322222   222332 22233223345555554443 999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      +++.
T Consensus        80 lAa~   83 (338)
T d1udca_          80 FAGL   83 (338)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            9864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.31  E-value=0.022  Score=41.52  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +++|+|.|+ |.+|..+++.+...|.+++++-+    +.++.+.+. .++...+................   ..|.++.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr----~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~i~   73 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACR----TLESAKKLSAGVQHSTPISLDVNDDAALDAEVA---KHDLVIS   73 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEES----CHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHT---TSSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEEC----ChHHHHHHHhcccccccccccccchhhhHhhhh---ccceeEe
Confidence            689999999 99999999988888998766664    555555554 45443333222222222222222   3788888


Q ss_pred             cCCCccH-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      +...... .....+++.+..++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          74 LIPYTFHATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             CSCGGGHHHHHHHHHHHTCEEECSS
T ss_pred             eccchhhhHHHHHHHhhccceeecc
Confidence            7766544 34445666667776654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=96.23  E-value=0.0078  Score=47.96  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=27.8

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +||+|+++++|.+.++.+...|++++++.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            5899999999999999999999999887754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.17  E-value=0.057  Score=38.56  Aligned_cols=101  Identities=16%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             HHHHHHHHhhc-CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHH
Q 021311          111 TALRMLEDFTT-LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVK  189 (314)
Q Consensus       111 ta~~~l~~~~~-~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~  189 (314)
                      ..+.++.+..+ +-.|++++|.|= |-+|.-.++-++.+|++|+++-.    ++-+.-++.--|. .+.        .+.
T Consensus         8 S~~d~i~r~t~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~----DPi~alqA~mdGf-~v~--------~~~   73 (163)
T d1v8ba1           8 SLPDGLMRATDFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEI----DPICAIQAVMEGF-NVV--------TLD   73 (163)
T ss_dssp             HHHHHHHHHHCCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECS----CHHHHHHHHTTTC-EEC--------CHH
T ss_pred             hHHHHHHHHhCceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEec----CchhhHHHHhcCC-ccC--------chh
Confidence            34566666555 468999999998 99999999999999999988873    4433222221222 221        122


Q ss_pred             HHhcCCCCCcEEEecCCCccH--HHHHHhcccCCEEEEEcC
Q 021311          190 GLLANLPEPALGFNCVGGNSA--SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~--~~~~~~l~~~G~~v~~g~  228 (314)
                      +...   ..|+++-++|....  ..-++.|+.+..+...|-
T Consensus        74 ~a~~---~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GH  111 (163)
T d1v8ba1          74 EIVD---KGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGH  111 (163)
T ss_dssp             HHTT---TCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSS
T ss_pred             Hccc---cCcEEEEcCCCCccccHHHHHHhhCCeEEEeccc
Confidence            2222   38999999999653  788999999999998883

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.14  E-value=0.008  Score=46.19  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCc--EEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIH--SINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~--vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+|||+|++|.+|..++..+...|..  ++...+    ++++..... -+. ..+..+-.+.+.+.+...+   +|.|+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R----~~~~~~~~~-~~~-~~~~~d~~~~~~~~~~~~~---~d~vi~   74 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR----SAQGKEKIG-GEA-DVFIGDITDADSINPAFQG---IDALVI   74 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEES----CHHHHHHTT-CCT-TEEECCTTSHHHHHHHHTT---CSEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcC----CHHHHHhcc-CCc-EEEEeeecccccccccccc---ceeeEE
Confidence            68999999999999999988888865  444553    444433322 122 2333333334455555443   999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      +++.
T Consensus        75 ~a~~   78 (252)
T d2q46a1          75 LTSA   78 (252)
T ss_dssp             CCCC
T ss_pred             EEee
Confidence            8864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.03  E-value=0.021  Score=41.36  Aligned_cols=85  Identities=19%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|.|+|. |.+|...+..++..|.+++++.+    ++++.+.+++.+.. ...+..+    .+    .   ..|+||-|+
T Consensus         2 kI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~----~~~~~~~a~~~~~~~~~~~~~~----~~----~---~~DiIilav   65 (165)
T d2f1ka2           2 KIGVVGL-GLIGASLAGDLRRRGHYLIGVSR----QQSTCEKAVERQLVDEAGQDLS----LL----Q---TAKIIFLCT   65 (165)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTSCSEEESCGG----GG----T---TCSEEEECS
T ss_pred             EEEEEee-cHHHHHHHHHHHHCCCEEEEEEC----CchHHHHHHHhhccceeeeecc----cc----c---ccccccccC
Confidence            5889999 99999988888888998887652    67778888888753 3322211    11    1   388888888


Q ss_pred             CCccHH----HHHHhcccCCEEEEEc
Q 021311          206 GGNSAS----KVLKFLSQGGTMVTYG  227 (314)
Q Consensus       206 g~~~~~----~~~~~l~~~G~~v~~g  227 (314)
                      ..+...    +..+.++++..++.++
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             cHhhhhhhhhhhhhhcccccceeecc
Confidence            654443    3334445555555554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.01  Score=45.73  Aligned_cols=77  Identities=19%  Similarity=0.303  Sum_probs=46.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      .+++|||+||+|.+|...++.+...|.  +++++++.+.....  .....+   .....+-...+.+.+...   ++|++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~--~~~~~i---~~~~~D~~~~~~~~~~~~---~~d~v   84 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE--EAYKNV---NQEVVDFEKLDDYASAFQ---GHDVG   84 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS--GGGGGC---EEEECCGGGGGGGGGGGS---SCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc--ccccee---eeeeeccccccccccccc---ccccc
Confidence            457999999999999999988877775  67777764322111  111111   122122222234444333   39999


Q ss_pred             EecCCCc
Q 021311          202 FNCVGGN  208 (314)
Q Consensus       202 ~d~~g~~  208 (314)
                      +.|+|..
T Consensus        85 i~~~~~~   91 (232)
T d2bkaa1          85 FCCLGTT   91 (232)
T ss_dssp             EECCCCC
T ss_pred             ccccccc
Confidence            9999863

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.98  E-value=0.023  Score=42.07  Aligned_cols=101  Identities=10%  Similarity=0.032  Sum_probs=61.0

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC----CCc------EEEecChh----
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL----GAD------EVFTESQL----  183 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~------~~~~~~~~----  183 (314)
                      ....+.||++||..|++  .|..+..+|+. |++|+++--    ++...+.+++.    +..      ........    
T Consensus        14 ~~l~~~~~~rvLd~GCG--~G~~a~~la~~-G~~V~gvD~----S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCG--KSQDMSWLSGQ-GYHVVGAEL----SEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             HHHCCCTTCEEEETTTC--CSHHHHHHHHH-CCEEEEEEE----CHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHcCCCCCCEEEEecCc--CCHHHHHHHHc-CCceEeecc----cHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            33678999999999993  47788888875 999988863    77777777542    110      00000000    


Q ss_pred             -hHHHHHHHhcCCCCCcEEEecCCCc---------cHHHHHHhcccCCEEEEEc
Q 021311          184 -EVKNVKGLLANLPEPALGFNCVGGN---------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       184 -~~~~i~~~~~~~g~~d~v~d~~g~~---------~~~~~~~~l~~~G~~v~~g  227 (314)
                       +...+......  .+|+|++.....         .+..+.+.|+|+|++++..
T Consensus        87 ~d~~~l~~~~~~--~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          87 GDFFALTARDIG--HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             ECCSSSTHHHHH--SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccccccccc--ceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence             00000000011  489998866532         1367788999999987654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=95.95  E-value=0.0013  Score=51.26  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=62.5

Q ss_pred             HHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc--EEEecChhhHH
Q 021311          113 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD--EVFTESQLEVK  186 (314)
Q Consensus       113 ~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~--~~~~~~~~~~~  186 (314)
                      +..+.+.+.++||++||=+|++  .|..+..+++. +++++++- .   ++...+.++    ..+..  ..+..+..   
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcG--tG~~~~~la~~-~~~v~gvD-~---S~~~l~~A~~~~~~~~~~~~~~~~~d~~---   74 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAG--AGHTALAFSPY-VQECIGVD-A---TKEMVEVASSFAQEKGVENVRFQQGTAE---   74 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCT--TSHHHHHHGGG-SSEEEEEE-S---CHHHHHHHHHHHHHHTCCSEEEEECBTT---
T ss_pred             HHHHHHHhCCCCCCEEEEeCCc--CcHHHHHHHHh-CCeEEEEe-C---Chhhhhhhhhhhcccccccccccccccc---
Confidence            3446677899999999999983  36777777764 67776555 2   555555443    33322  12211111   


Q ss_pred             HHHHHhcCCCCCcEEEecCCCc-------cHHHHHHhcccCCEEEEEc
Q 021311          187 NVKGLLANLPEPALGFNCVGGN-------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g  227 (314)
                         ++.-..+.||+|+.+..-.       .+.++.+.|+|+|+++..-
T Consensus        75 ---~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          75 ---SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             ---BCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---cccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence               1111122599998765532       1378889999999988753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.90  E-value=0.0082  Score=44.64  Aligned_cols=97  Identities=15%  Similarity=0.201  Sum_probs=59.2

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNVKG  190 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i~~  190 (314)
                      ...++++|++||=.|++  .|..++.+|+. +.+++++- .   +++..+.++    +.|..   .++..+.      .+
T Consensus        27 ~~l~~~~g~~VLDiGcG--sG~~s~~lA~~-~~~V~avD-~---~~~~l~~a~~n~~~~gl~~~v~~~~gda------~~   93 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGCG--TGGVTLELAGR-VRRVYAID-R---NPEAISTTEMNLQRHGLGDNVTLMEGDA------PE   93 (186)
T ss_dssp             HHHCCCTTCEEEEESCT--TSHHHHHHHTT-SSEEEEEE-S---CHHHHHHHHHHHHHTTCCTTEEEEESCH------HH
T ss_pred             HhcCCCCCCEEEEEECC--eEccccccccc-ceEEEEec-C---CHHHHHHHHHHHHHcCCCcceEEEECch------hh
Confidence            44789999999999983  35556666664 55776654 3   666655553    45532   2232221      11


Q ss_pred             HhcCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEc
Q 021311          191 LLANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      .......+|.++-..+...    +..+.+.|+|+|+++...
T Consensus        94 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_          94 ALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             HHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            1122225999986655432    367788999999988654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.86  E-value=0.047  Score=37.78  Aligned_cols=94  Identities=12%  Similarity=0.085  Sum_probs=61.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      ++++|+|. |.+|..+++.+...|..++++-.    ++++.+.++..+...++ .+....+.+.+..-.  ..|.++-++
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~----d~~~~~~~~~~~~~~~~-gd~~~~~~l~~a~i~--~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDI----NEEKVNAYASYATHAVI-ANATEENELLSLGIR--NFEYVIVAI   72 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEES----CHHHHHHTTTTCSEEEE-CCTTCTTHHHHHTGG--GCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecC----cHHHHHHHHHhCCccee-eecccchhhhccCCc--cccEEEEEc
Confidence            45788898 99999999999999999887773    78888888887765444 332222233333222  389988888


Q ss_pred             CCccH----HHHHHhcccCCEEEEEc
Q 021311          206 GGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       206 g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      +....    ......+.+..+++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          73 GANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CchHHhHHHHHHHHHHcCCCcEEeec
Confidence            87543    22233344556666543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=95.78  E-value=0.0015  Score=50.49  Aligned_cols=99  Identities=10%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCcE--EEecChhhHHHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGADE--VFTESQLEVKNVK  189 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~~--~~~~~~~~~~~i~  189 (314)
                      +.+.++++++++||=+|++  .|..+..+++. |++++++- .   ++...+.+    +..+...  ....+..   +  
T Consensus         7 ll~~~~l~~~~rVLDiGcG--~G~~~~~l~~~-~~~v~gvD-~---s~~~i~~A~~~~~~~~~~~i~~~~~d~~---~--   74 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG--GGHVANAFAPF-VKKVVAFD-L---TEDILKVARAFIEGNGHQQVEYVQGDAE---Q--   74 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT--TCHHHHHHGGG-SSEEEEEE-S---CHHHHHHHHHHHHHTTCCSEEEEECCC----C--
T ss_pred             HHHhcCCCCcCEEEEeccc--CcHHHHHHHHh-CCEEEEEE-C---CHHHHhhhhhcccccccccccccccccc---c--
Confidence            4566899999999999983  46666666654 77776554 2   55555554    3344432  2222211   1  


Q ss_pred             HHhcCCCCCcEEEecCCCc-------cHHHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGGN-------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g  227 (314)
                       +.-..+.||+|+-...-.       .+.++.+.|+|||+++...
T Consensus        75 -l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          75 -MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             -CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence             111112599998765432       2378889999999999754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.015  Score=41.92  Aligned_cols=97  Identities=19%  Similarity=0.181  Sum_probs=68.3

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      ..+|+++...+..|.+..---.|++|+|.|.+..+|.-+..++...|++++.+-..   +.                   
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~---t~-------------------   72 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF---TK-------------------   72 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS---CS-------------------
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccc---cc-------------------
Confidence            45666666777777664444579999999999999999999999999998655421   11                   


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                          .+.+.+.   ..|+++-++|.+.+-. -+.++++..++.+|..
T Consensus        73 ----~l~~~~~---~ADivI~a~G~p~~i~-~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          73 ----NLRHHVE---NADLLIVAVGKPGFIP-GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             ----CHHHHHH---HCSEEEECSCCTTCBC-TTTSCTTCEEEECCCE
T ss_pred             ----hhHHHHh---hhhHhhhhccCccccc-ccccCCCcEEEecCce
Confidence                0111122   2999999999865411 2477899999988854

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=95.69  E-value=0.0047  Score=49.38  Aligned_cols=101  Identities=11%  Similarity=0.007  Sum_probs=62.7

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCC--cEEEecChhhHHHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGA--DEVFTESQLEVKNVK  189 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~--~~~~~~~~~~~~~i~  189 (314)
                      +...+.++++++||=+|++  .|..+..+++..|++++++.-    ++...+.++    ..|.  ...+...+     ..
T Consensus        59 l~~~~~l~~~~~vLDiGcG--~G~~~~~la~~~~~~v~gvD~----s~~~i~~a~~~~~~~gl~~~v~~~~~d-----~~  127 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAG--YGGAARFLVRKFGVSIDCLNI----APVQNKRNEEYNNQAGLADNITVKYGS-----FL  127 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEES----CHHHHHHHHHHHHHHTCTTTEEEEECC-----TT
T ss_pred             HHHhcCCCCCCEEEEeCCC--CcHHHhhhhccCCcEEEEEec----cchhhhhhhcccccccccccccccccc-----cc
Confidence            4455678999999999983  466777888888998877663    555554443    2332  22121111     11


Q ss_pred             HHhcCCCCCcEEEecCCCc-------cHHHHHHhcccCCEEEEEc
Q 021311          190 GLLANLPEPALGFNCVGGN-------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g  227 (314)
                      ++....+.||+|+-...-.       .+..+.+.|+|+|+++...
T Consensus       128 ~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         128 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            1111222599998654431       2368889999999998865

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.017  Score=45.28  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHH-HH--HcCCcEEEEecCCCCcHHHHHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQI-AR--HRGIHSINIIRDRAGSDEAKEKL  169 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~l-a~--~~g~~vi~~~~~~~~~~~~~~~~  169 (314)
                      .|+.++|+|+++++|.++++. |+  ..|++++++.+    ++++.+.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r----~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSAR----SESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEES----CHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEEC----CHHHHHHH
Confidence            468889999999999988754 44  36899998885    45554433

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.68  E-value=0.049  Score=42.53  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=29.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ..||+|+++++|.+.+..+...|++++.+.+.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~   34 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRH   34 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            56999999999999999999999999988864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.67  E-value=0.033  Score=45.52  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh-HHHHHHHhcCCCCCcEEE
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPEPALGF  202 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~i~~~~~~~g~~d~v~  202 (314)
                      ..++|+|+|++|.+|..++..+...|.+|++++++..  ..+...+.......++..+-.+ .+.+.....+   .|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~--~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~---~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK--GLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEG---AHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC--SHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTT---CSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc--hhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcC---CceEE
Confidence            5689999999999999999999889999999997642  2233333444333333332211 2233334433   77777


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .....
T Consensus        77 ~~~~~   81 (350)
T d1xgka_          77 INTTS   81 (350)
T ss_dssp             ECCCS
T ss_pred             eeccc
Confidence            65543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.024  Score=41.14  Aligned_cols=97  Identities=13%  Similarity=0.168  Sum_probs=69.7

Q ss_pred             hcccccHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh
Q 021311          103 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ  182 (314)
Q Consensus       103 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  182 (314)
                      +.+|+++...+..+.+..---.|++|+|.|.+..+|.-+..++...|+++..+-..   +..                  
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~---t~~------------------   75 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---TAH------------------   75 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---CSS------------------
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecc---ccc------------------
Confidence            45677777777777664434589999999999999999999999999999876632   111                  


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                           +.+.+.   +.|+++-++|.+.+-. -++++++-.++.+|..
T Consensus        76 -----l~~~~~---~aDivi~a~G~~~~i~-~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          76 -----LDEEVN---KGDILVVATGQPEMVK-GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             -----HHHHHT---TCSEEEECCCCTTCBC-GGGSCTTCEEEECCCB
T ss_pred             -----HHHHHh---hccchhhccccccccc-cccccCCCeEeccCcc
Confidence                 111222   3899998888865511 3578888888888843

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.61  E-value=0.028  Score=41.98  Aligned_cols=85  Identities=16%  Similarity=0.088  Sum_probs=57.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...+++++.+|+++++.....  +..  ...  .+..    .  ..   +.+...   ..|++..
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~--~~~--~~~--~~~~----~--~~---l~~~l~---~sDii~~  102 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFR--NPE--LEK--KGYY----V--DS---LDDLYK---QADVISL  102 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC--CHH--HHH--TTCB----C--SC---HHHHHH---HCSEEEE
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcccccccCccc--ccc--ccc--ceee----e--cc---cccccc---ccccccc
Confidence            4799999999 9999999999999999998775321  211  111  1111    1  11   222222   2899988


Q ss_pred             cCCCc-c----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGN-S----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~-~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++... .    . ...++.|+++..+|.++
T Consensus       103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~s  132 (197)
T d1j4aa1         103 HVPDVPANVHMINDESIAKMKQDVVIVNVS  132 (197)
T ss_dssp             CSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred             cCCccccccccccHHHHhhhCCccEEEecC
Confidence            87642 1    2 68889999999888876

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.57  E-value=0.13  Score=37.31  Aligned_cols=99  Identities=15%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh--HH--------HHHHHhcCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE--VK--------NVKGLLANL  195 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~--~~--------~i~~~~~~~  195 (314)
                      +|.|.|- |.+|...++.+... ..+++.+.+..  .......+...+.+......+..  ..        .+.+...  
T Consensus         4 rIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (172)
T d2czca2           4 KVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTK--PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--   78 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESS--CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCceEEEEecCC--ChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc--
Confidence            6889998 99999888877654 45777777652  34445566666654333221110  00        1111111  


Q ss_pred             CCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCC
Q 021311          196 PEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       196 g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~  231 (314)
                       ++|+|+||+|.-.. +.+...+..|-+.|+.+.+..
T Consensus        79 -~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          79 -KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             -TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             -cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence             49999999998665 666678889999999886544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.028  Score=37.72  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             CCCC-CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          122 LNSG-DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       122 ~~~~-~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +.|+ .+|.|+|+ |.+|.++++.|+.+|.++++....
T Consensus         7 ~~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~   43 (111)
T d1kjqa2           7 LRPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRY   43 (111)
T ss_dssp             TSTTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4455 56999999 999999999999999999887743

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.54  E-value=0.013  Score=47.98  Aligned_cols=38  Identities=18%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      -+++|++|||+|++|-+|..++..+...|.+|+++++.
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            36789999999999999999998888889999999863

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.51  E-value=0.026  Score=45.85  Aligned_cols=81  Identities=10%  Similarity=0.200  Sum_probs=48.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-cHHHHHHH----HhCC--CcEEEecChhhHHHHHHHhcCCCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-SDEAKEKL----KGLG--ADEVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-~~~~~~~~----~~lg--~~~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      +++||+||+|-+|..++..+...|.+|+++.+.... ...+.+.+    ....  ....+..+-...+.+.+..... ++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~-~~   80 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI-KP   80 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH-CC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh-cc
Confidence            689999999999999999998899999999864221 11111111    0111  1112222222333444433333 39


Q ss_pred             cEEEecCCC
Q 021311          199 ALGFNCVGG  207 (314)
Q Consensus       199 d~v~d~~g~  207 (314)
                      |+|+.+++.
T Consensus        81 D~Vih~Aa~   89 (339)
T d1n7ha_          81 DEVYNLAAQ   89 (339)
T ss_dssp             SEEEECCSC
T ss_pred             chhhhcccc
Confidence            999999985

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.46  E-value=0.0096  Score=47.76  Aligned_cols=34  Identities=12%  Similarity=0.067  Sum_probs=30.4

Q ss_pred             CCCEEEEcCCCc--HHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATS--IVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g--~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .|+++||+|++|  ++|.+.++.+...|+++++..+
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            679999999965  8999999999999999987774

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.43  E-value=0.051  Score=43.19  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc-HHHH---HHHHhCCCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS-DEAK---EKLKGLGADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~-~~~~---~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      .-++|||+|++|.+|...+..+...|.+++++++..... ..+.   ......+.+.+ ..+-.+.+.+.....+   .+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v-~~d~~d~~~~~~~~~~---~~   77 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI-EASLDDHQRLVDALKQ---VD   77 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEE-CCCSSCHHHHHHHHTT---CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEE-EeecccchhhhhhccC---cc
Confidence            346799999999999999998888999999998754322 2222   23334454433 2222223344444443   77


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      .++.+.+.
T Consensus        78 ~~~~~~~~   85 (312)
T d1qyda_          78 VVISALAG   85 (312)
T ss_dssp             EEEECCCC
T ss_pred             hhhhhhhh
Confidence            88887765

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.39  E-value=0.028  Score=46.84  Aligned_cols=31  Identities=10%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINI  155 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~  155 (314)
                      |++|||+|++|-+|..++..+...|.+|+++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~i   31 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIV   31 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            6899999999999999999998999998876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.37  E-value=0.075  Score=38.39  Aligned_cols=88  Identities=18%  Similarity=0.179  Sum_probs=54.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++|+|+|. |.+|...+..++..|.  +++++ +   .+++..+.+++.+.. ......+...        .. ..|+|+
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~-D---~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~-~~dlIi   67 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGY-D---INPESISKAVDLGIIDEGTTSIAKVE--------DF-SPDFVM   67 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEE-C---SCHHHHHHHHHTTSCSEEESCGGGGG--------GT-CCSEEE
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEE-E---CChHHHHHHHHhhcchhhhhhhhhhh--------cc-cccccc
Confidence            46999998 9999999988888886  44444 3   378888888888753 2222221110        00 367777


Q ss_pred             ecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          203 NCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       203 d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      -|+.....    ....+.++++..++.++
T Consensus        68 la~p~~~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          68 LSSPVRTFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ccCCchhhhhhhhhhhccccccccccccc
Confidence            77765433    33444556666666555

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.34  E-value=0.029  Score=41.76  Aligned_cols=87  Identities=22%  Similarity=0.199  Sum_probs=57.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|+++.|+|. |.+|...+++++.+|++++...+...  ..   .....+...   ..  .   +.++..   ..|+|.-
T Consensus        48 ~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~--~~---~~~~~~~~~---~~--~---l~~ll~---~sD~i~~  110 (193)
T d1mx3a1          48 RGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS--DG---VERALGLQR---VS--T---LQDLLF---HSDCVTL  110 (193)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC--TT---HHHHHTCEE---CS--S---HHHHHH---HCSEEEE
T ss_pred             eCceEEEecc-ccccccceeeeeccccceeeccCccc--cc---chhhhcccc---cc--c---hhhccc---cCCEEEE
Confidence            5789999999 99999999999999999988774321  11   111122211   11  1   222222   2788877


Q ss_pred             cCCCc-c----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGN-S----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~-~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      +.... .    . ...++.|+++..+|.++
T Consensus       111 ~~plt~~T~~li~~~~l~~mk~~a~lIN~s  140 (193)
T d1mx3a1         111 HCGLNEHNHHLINDFTVKQMRQGAFLVNTA  140 (193)
T ss_dssp             CCCCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred             eecccccchhhhhHHHHhccCCCCeEEecC
Confidence            66532 1    1 67888999998888876

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.29  E-value=0.03  Score=38.67  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|.|+|++|-+|++..+++...+.+.+...+.+  +.                 ..         . .  .+|+++|.+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~--~~-----------------~~---------~-~--~~DVvIDFS~   50 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN--GV-----------------EE---------L-D--SPDVVIDFSS   50 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT--EE-----------------EE---------C-S--CCSEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC--cH-----------------HH---------h-c--cCCEEEEecC
Confidence            589999999999999999998888877666321  00                 00         0 1  4899999999


Q ss_pred             CccHHHHHHhcccCCEEEEEcCCC
Q 021311          207 GNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       207 ~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .+.+...++.....+.=+.+|..+
T Consensus        51 p~~~~~~l~~~~~~~~p~ViGTTG   74 (128)
T d1vm6a3          51 PEALPKTVDLCKKYRAGLVLGTTA   74 (128)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECCCS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCC
Confidence            888877776665666556677544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.015  Score=47.94  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCC-cHHHHHHHHh----CCCcE-EEecChhhHHHHHHHhcCCCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG-SDEAKEKLKG----LGADE-VFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~-~~~~~~~~~~----lg~~~-~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      +.+||+||+|-+|..++..+...|.+|+++.+.... ...+.+.+..    ..... .+..+-.+.+.+.+...+.. +|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~-~d   80 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ-PD   80 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC-CS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccC-CC
Confidence            678999999999999998888889999988753211 1112222211    11111 11122123345555554433 89


Q ss_pred             EEEecCCC
Q 021311          200 LGFNCVGG  207 (314)
Q Consensus       200 ~v~d~~g~  207 (314)
                      +|+.+++.
T Consensus        81 ~v~h~aa~   88 (357)
T d1db3a_          81 EVYNLGAM   88 (357)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeecc
Confidence            99999875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.25  E-value=0.067  Score=44.60  Aligned_cols=110  Identities=19%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             cHHHHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCCCCcHHHHHHHHh---------------
Q 021311          108 NPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDRAGSDEAKEKLKG---------------  171 (314)
Q Consensus       108 ~~~ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~~~~~~~~~~~~~---------------  171 (314)
                      .+....+.+.+ .++++|+++|=+|+  +.|..+.++|+..|+ +++++--    ++...+.++.               
T Consensus       201 ~~~~i~~Il~~-l~Lkpgd~fLDLGC--G~G~~vl~aA~~~g~~~v~GIDi----S~~~i~~Ak~~~~e~~~~~~~~g~~  273 (406)
T d1u2za_         201 LPNFLSDVYQQ-CQLKKGDTFMDLGS--GVGNCVVQAALECGCALSFGCEI----MDDASDLTILQYEELKKRCKLYGMR  273 (406)
T ss_dssp             CHHHHHHHHHH-TTCCTTCEEEEESC--TTSHHHHHHHHHHCCSEEEEEEC----CHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CHHHHHHHHHH-hCCCCCCEEEeCCC--CCcHHHHHHHHHcCCCeEEEEeC----CHHHHHHHHHHHHHHhhhhhhhccc
Confidence            34455666655 88999999999987  579999999999997 5666663    5555444432               


Q ss_pred             CCCcEEEecCh-hhHHHHHHHhcCCCCCcEEEecCC-C-c----cHHHHHHhcccCCEEEEEc
Q 021311          172 LGADEVFTESQ-LEVKNVKGLLANLPEPALGFNCVG-G-N----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       172 lg~~~~~~~~~-~~~~~i~~~~~~~g~~d~v~d~~g-~-~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      .+........+ ...+.......   .+|+++-..- . +    .+.+..+.|+|||++|..-
T Consensus       274 ~~~~~~~~~~~f~~~~~~d~~~~---~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         274 LNNVEFSLKKSFVDNNRVAELIP---QCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             CCCEEEEESSCSTTCHHHHHHGG---GCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccceeeeeechhhccccccccc---cceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            11111111111 11122222222   2788875322 1 1    2357778999999998753

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.14  E-value=0.028  Score=46.39  Aligned_cols=79  Identities=9%  Similarity=0.175  Sum_probs=46.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC--c-EEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA--D-EVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~-~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +|||+||+|-+|..++..+...|.++++.++..... .+...+..+..  . ..+..+-.+.+.+.++..+. ++|+||.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-~~d~Vih   79 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYA-GNLESLSDISESNRYNFEHADICDSAEITRIFEQY-QPDAVMH   79 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTT-CCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-CCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc-ccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhC-CCCEEEE
Confidence            699999999999999988888899877776542211 11111222211  1 11212212233444443333 3999999


Q ss_pred             cCCC
Q 021311          204 CVGG  207 (314)
Q Consensus       204 ~~g~  207 (314)
                      +++.
T Consensus        80 lAa~   83 (361)
T d1kewa_          80 LAAE   83 (361)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            9874

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.13  E-value=0.19  Score=36.37  Aligned_cols=97  Identities=16%  Similarity=0.262  Sum_probs=60.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh--HH--------HHHHHhcCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE--VK--------NVKGLLANL  195 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~--~~--------~i~~~~~~~  195 (314)
                      +|.|.|- |.+|....+++...+ .+++.+.+..  .......+...+.+......+..  .+        .+.+...  
T Consensus         3 ~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~--   77 (171)
T d1cf2o1           3 AVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTR--PDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--   77 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESS--CSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--
T ss_pred             EEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCC--cHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc--
Confidence            6889998 999999998876655 4666666542  33444455556655433222211  00        1222222  


Q ss_pred             CCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCC
Q 021311          196 PEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       196 g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~  229 (314)
                       ++|+|+||+|.-.. +.+-..+..+-+.|..+..
T Consensus        78 -~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~  111 (171)
T d1cf2o1          78 -EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (171)
T ss_dssp             -TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTS
T ss_pred             -CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCC
Confidence             39999999998654 5566678888888877643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.08  E-value=0.019  Score=47.34  Aligned_cols=77  Identities=16%  Similarity=0.103  Sum_probs=48.7

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ..+-+|||+||+|-+|..++..+...|.+|+++.+.+...     .............+-...+.+.....   ++|.|+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~Vi   84 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH-----MTEDMFCDEFHLVDLRVMENCLKVTE---GVDHVF   84 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSS-----SCGGGTCSEEEECCTTSHHHHHHHHT---TCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccc-----hhhhcccCcEEEeechhHHHHHHHhh---cCCeEe
Confidence            3578999999999999999999999999998876432111     11112222222222223344444443   399999


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .+++.
T Consensus        85 h~a~~   89 (363)
T d2c5aa1          85 NLAAD   89 (363)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98854

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.04  E-value=0.032  Score=41.20  Aligned_cols=86  Identities=17%  Similarity=0.118  Sum_probs=57.9

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .++++.|.|. |.+|...+++++.+|++++...+..  +++   .....+...    .  ..++   +..   ..|+|.-
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~--~~~---~~~~~~~~~----~--~l~e---ll~---~sDiv~~  104 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYV--SPA---RAAQLGIEL----L--SLDD---LLA---RADFISV  104 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTS--CHH---HHHHHTCEE----C--CHHH---HHH---HCSEEEE
T ss_pred             cceeeeeccc-cchhHHHHHHhhhccceEEeecCCC--Chh---HHhhcCcee----c--cHHH---HHh---hCCEEEE
Confidence            5789999999 9999999999999999998776431  221   112222211    1  1122   222   2889988


Q ss_pred             cCCC-cc----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGG-NS----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~-~~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++.. +.    + ...++.|+++..+|.++
T Consensus       105 ~~Plt~~T~~lin~~~l~~mk~~a~lIN~s  134 (184)
T d1ygya1         105 HLPKTPETAGLIDKEALAKTKPGVIIVNAA  134 (184)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             cCCCCchhhhhhhHHHHhhhCCCceEEEec
Confidence            7664 22    2 68889999999988876

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.013  Score=47.35  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ++|||+|++|-+|..++..+...|.+|+++.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999999999999999888888999998764

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.00  E-value=0.055  Score=43.92  Aligned_cols=33  Identities=24%  Similarity=0.117  Sum_probs=28.1

Q ss_pred             CCEEEEcCC--CcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGA--TSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~--~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ++..||+|+  +.++|.+.++.+...|++++.+..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~   36 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIW   36 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeC
Confidence            567899995  458999999999999999988764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=94.96  E-value=0.062  Score=41.03  Aligned_cols=110  Identities=10%  Similarity=0.114  Sum_probs=63.8

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC--CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hHHHHHHHhc-
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRG--IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EVKNVKGLLA-  193 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~i~~~~~-  193 (314)
                      .+++...-++||-+|.  ..|+.++.+|+.+.  .+++++...+......++..+..|...-+..... ..+.+.++.. 
T Consensus        53 ~L~~~~~~k~iLEiGT--~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~  130 (227)
T d1susa1          53 MLLKLINAKNTMEIGV--YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD  130 (227)
T ss_dssp             HHHHHHTCCEEEEECC--GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHC
T ss_pred             HHHHhcCCCcEEEecc--hhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhc
Confidence            3345556789999995  67888999998764  4565555322112222334445665432222211 1122333321 


Q ss_pred             --CCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEcCC
Q 021311          194 --NLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       194 --~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g~~  229 (314)
                        ..+.||.||--+....    ++.+++.|++||.++.=...
T Consensus       131 ~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         131 EKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             cccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence              1235999986555433    37889999999998876543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.19  Score=35.49  Aligned_cols=99  Identities=17%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      .++++|+|. |.+|..+++.+...|.+++++...+....+..+.....|.. ++..+..+.+.+++..-.  ..|.++-+
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~~d~~~L~~a~i~--~a~~vi~~   78 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD-VIPGDSNDSSVLKKAGID--RCRAILAL   78 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCE-EEESCTTSHHHHHHHTTT--TCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcE-EEEccCcchHHHHHhccc--cCCEEEEc
Confidence            467999999 99999999999999999887774311111223333334443 343443333344443323  48999998


Q ss_pred             CCCccH----HHHHHhcccCCEEEEEc
Q 021311          205 VGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      ++.+..    ....+.+.+.-+++...
T Consensus        79 ~~~d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          79 SDNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             SSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             cccHHHHHHHHHHHHHhCCCCceEEEE
Confidence            887543    34445566777776554

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.92  E-value=0.037  Score=44.52  Aligned_cols=79  Identities=15%  Similarity=0.271  Sum_probs=47.2

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc---EEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD---EVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++|||+|++|-+|..++..+...|.+|+++.+....  ...+.++.++..   ..+..+-.+.+.+.+..... ..++++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~~~~~   77 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS--DTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKA-QPQEVY   77 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS--CCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH-CCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCc--ccHHHHHHhcccCCcEEEEccccChHHhhhhhccc-cccccc
Confidence            589999999999999998888889999998865322  112333333322   22222212223333332222 267777


Q ss_pred             ecCCC
Q 021311          203 NCVGG  207 (314)
Q Consensus       203 d~~g~  207 (314)
                      .++..
T Consensus        78 ~~a~~   82 (321)
T d1rpna_          78 NLAAQ   82 (321)
T ss_dssp             ECCSC
T ss_pred             ccccc
Confidence            77654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.90  E-value=0.072  Score=37.76  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=48.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH-hCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|.++|+ |.+|.+.++-+...|...+.+.+.   ++++.+.+. ++|... .+..+.    +      . ..|+||-|+
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r---~~~~~~~l~~~~~~~~-~~~~~~----v------~-~~Div~lav   65 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANR---GAEKRERLEKELGVET-SATLPE----L------H-SDDVLILAV   65 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEEEECS---SHHHHHHHHHHTCCEE-ESSCCC----C------C-TTSEEEECS
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeC---ChhHHHHhhhhccccc-cccccc----c------c-ccceEEEec
Confidence            5788999 999998887544445444444443   566666654 466543 222211    1      0 367888777


Q ss_pred             CCccHHHHHHhcccCCEEEE
Q 021311          206 GGNSASKVLKFLSQGGTMVT  225 (314)
Q Consensus       206 g~~~~~~~~~~l~~~G~~v~  225 (314)
                      -...+...++-+++.++++.
T Consensus        66 kP~~~~~v~~~l~~~~~~vi   85 (152)
T d1yqga2          66 KPQDMEAACKNIRTNGALVL   85 (152)
T ss_dssp             CHHHHHHHHTTCCCTTCEEE
T ss_pred             CHHHHHHhHHHHhhcccEEe
Confidence            65555666666666555443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.0076  Score=43.96  Aligned_cols=101  Identities=10%  Similarity=0.101  Sum_probs=60.9

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH--HhCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL--KGLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~--~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      -.|++++|.|.+..+|.=+..++.+.|+++..+-..   +.......  ...-...+-+......+.+++.+..   .|+
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDI  100 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN---NIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD---SDV  100 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS---EEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH---CSE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc---cccccccccceeeeeeccccccccchhHHhhcccc---CCE
Confidence            468999999998999998888888899988654421   11000000  0011111111111112234443333   999


Q ss_pred             EEecCCCccHHHHHHhcccCCEEEEEcCC
Q 021311          201 GFNCVGGNSASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       201 v~d~~g~~~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      ++.++|.+.+.---+++++|..++.+|..
T Consensus       101 vIsavG~p~~~i~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         101 VITGVPSENYKFPTEYIKEGAVCINFACT  129 (171)
T ss_dssp             EEECCCCTTCCBCTTTSCTTEEEEECSSS
T ss_pred             EEEccCCCccccChhhcccCceEeecccc
Confidence            99999987653334678889999999854

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.83  E-value=0.072  Score=38.49  Aligned_cols=99  Identities=15%  Similarity=0.115  Sum_probs=64.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcE--------------EEec------ChhhHH
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADE--------------VFTE------SQLEVK  186 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--------------~~~~------~~~~~~  186 (314)
                      +|.|.|- |-+|.++.+.+...+.+++.+-+.  .+.+...++.+....|              .++.      ...+++
T Consensus         2 kigINGf-GRIGR~~~R~l~~~~i~iv~INd~--~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~   78 (168)
T d2g82a1           2 KVGINGF-GRIGRQVFRILHSRGVEVALINDL--TDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEEECS--SCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             EEEEECC-cHHHHHHHHHHhcCCCEEEEECCC--cchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence            5789999 999999999888888888888876  3666777775433211              1110      111122


Q ss_pred             HHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCC
Q 021311          187 NVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      ++.+..  . ++|+|+||+|.-.. +.+...+..+.+-|.+..+..
T Consensus        79 ~i~W~~--~-gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  121 (168)
T d2g82a1          79 EIPWAE--A-GVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK  121 (168)
T ss_dssp             GCCTGG--G-TEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             HCcccc--c-CCceeEeccccccchHHhhhhhccccceeeeccccc
Confidence            222211  1 49999999998554 566677777776677775554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.79  E-value=0.068  Score=42.12  Aligned_cols=80  Identities=21%  Similarity=0.289  Sum_probs=49.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCc--HHHHHHH---HhCCCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS--DEAKEKL---KGLGADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~--~~~~~~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      -++|||+||+|.+|..++..+...|.+|+++++.....  .++....   ...+.+ ++..+-.....+.+...+   .+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~---~~   78 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN-IVHGSIDDHASLVEAVKN---VD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCE-EECCCTTCHHHHHHHHHT---CS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcE-EEEeecccchhhhhhhhh---ce
Confidence            47899999999999999999988999999998754322  1222222   223333 333332222333333333   77


Q ss_pred             EEEecCCCc
Q 021311          200 LGFNCVGGN  208 (314)
Q Consensus       200 ~v~d~~g~~  208 (314)
                      .++.+.+..
T Consensus        79 ~vi~~~~~~   87 (307)
T d1qyca_          79 VVISTVGSL   87 (307)
T ss_dssp             EEEECCCGG
T ss_pred             eeeeccccc
Confidence            777777653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.76  E-value=0.17  Score=40.87  Aligned_cols=47  Identities=6%  Similarity=0.179  Sum_probs=36.5

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK  170 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~  170 (314)
                      .-+++||+|++|-+|..++..+...|.+++++.+.......+.+..+
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~   61 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVR   61 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHH
Confidence            34789999999999999999999999999998754434455544443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.025  Score=45.64  Aligned_cols=101  Identities=11%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc---EEEecChhhHHHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD---EVFTESQLEVKNVKGL  191 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~~~~~~~~~~~~i~~~  191 (314)
                      ++.+.....+|++||-+|+ | .|..++.+|+ .|++.+..++.........+.....+..   .++..+      +.++
T Consensus        26 ai~~~~~~~~~~~VLDiGc-G-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~------~~~l   96 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGC-G-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK------IEEV   96 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETC-T-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC------TTTS
T ss_pred             HHHhccccCCcCEEEEECC-C-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEee------HHHh
Confidence            3444456778999999998 3 4556665555 5876555555422111112233333322   222222      1111


Q ss_pred             hcCCCCCcEEEecCCC-----cc-HH---H-HHHhcccCCEEE
Q 021311          192 LANLPEPALGFNCVGG-----NS-AS---K-VLKFLSQGGTMV  224 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~-----~~-~~---~-~~~~l~~~G~~v  224 (314)
                      .....++|+|+...-+     +. ..   . .-+.|+|+|+++
T Consensus        97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            1122259999752221     11 22   2 235799999876

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.73  E-value=0.026  Score=43.22  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=60.6

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHH----hCCCcEEEecChhhHHHHHHHhc
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLK----GLGADEVFTESQLEVKNVKGLLA  193 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~i~~~~~  193 (314)
                      ..++||++||=.|++  .|..+..+++..|.  +++++- .   +++..+.++    ..+....+..+....+...   .
T Consensus        69 l~i~pG~~VLDlGaG--sG~~t~~la~~VG~~G~V~aVD-~---s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~---~  139 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIA--SGTTASHVSDIVGWEGKIFGIE-F---SPRVLRELVPIVEERRNIVPILGDATKPEEYR---A  139 (227)
T ss_dssp             CCCCTTCEEEEETTT--STTHHHHHHHHHCTTSEEEEEE-S---CHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT---T
T ss_pred             cccCCCCEEEEeccC--CCHHHHHHHHHhCCCCEEEEEe-C---cHHHHHHHHHHHHhcCCceEEEEECCCccccc---c
Confidence            678999999999983  48888999998864  566555 2   566655553    3333222222221111111   1


Q ss_pred             CCCCCcEEEecCCCc-----cHHHHHHhcccCCEEEEE
Q 021311          194 NLPEPALGFNCVGGN-----SASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~-----~~~~~~~~l~~~G~~v~~  226 (314)
                      ....+|+++......     .+..+.+.|+++|+++++
T Consensus       140 ~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         140 LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            112489887655432     136778899999998875

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.67  E-value=0.033  Score=43.77  Aligned_cols=61  Identities=18%  Similarity=0.303  Sum_probs=42.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||+||+|-+|..++..++..|.+++++.+.+                  +|..+  .+.+.+...+. ++|+|+.|++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------~D~~d--~~~~~~~l~~~-~~d~vih~a~   61 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------LDITN--VLAVNKFFNEK-KPNVVINCAA   61 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------CCTTC--HHHHHHHHHHH-CCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------ccCCC--HHHHHHHHHHc-CCCEEEeecc
Confidence            589999999999999999999999988776421                  11111  22333333333 3899999887


Q ss_pred             Cc
Q 021311          207 GN  208 (314)
Q Consensus       207 ~~  208 (314)
                      ..
T Consensus        62 ~~   63 (281)
T d1vl0a_          62 HT   63 (281)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.59  Score=37.95  Aligned_cols=106  Identities=22%  Similarity=0.273  Sum_probs=73.5

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---------------
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---------------  182 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---------------  182 (314)
                      +...+++++.|+... +|..|.+++..|+.+|.+.++++... .++++.+.++.+|++.+.....               
T Consensus        90 ~~g~~~~~~~vv~aS-sGN~g~a~A~~a~~~Gi~~~iv~p~~-~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~  167 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPT-SGNTGIGLALAAAVRGYRCIIVMPEK-MSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWR  167 (355)
T ss_dssp             HHTCSCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEECSC-CCHHHHHHHHHTTCEEEECCC-------CCHHHHHHH
T ss_pred             HcCCcccCceEEEec-ccchhhHHHHHHHhccCCeEEEeecc-chHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHH
Confidence            335567767665544 49999999999999999998888554 4788999999999986542100               


Q ss_pred             ---------------h--h--------HHHHHHHhcCCCCCcEEEecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          183 ---------------L--E--------VKNVKGLLANLPEPALGFNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 ---------------~--~--------~~~i~~~~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                                     .  +        ..++.+.+++  .+|.++-++|+-..    ...++...+.-+++.+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~--~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~ve  239 (355)
T d1jbqa_         168 LKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDG--KLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVD  239 (355)
T ss_dssp             HHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTT--CCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHhccccccccccCcccchhhhcccchhhhhhhcCC--CCCeeEecccCCchHHHHHHHHhhcCCcceEEeec
Confidence                           0  0        0223333333  59999999997543    46666777888888766

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.036  Score=42.41  Aligned_cols=103  Identities=14%  Similarity=0.024  Sum_probs=62.9

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC-CCcE------------EEecChhh
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL-GADE------------VFTESQLE  184 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~------------~~~~~~~~  184 (314)
                      +...+.++.+||..|+ | .|..+..+|+ .|++|+++-    -++...+.+++. +...            ........
T Consensus        39 ~~l~~~~~~rvLd~GC-G-~G~~a~~LA~-~G~~V~gvD----~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLC-G-KAVEMKWFAD-RGHSVVGVE----ISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHTTCCSCEEEETTC-T-TCTHHHHHHH-TTCEEEEEC----SCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HhcCCCCCCEEEEeCC-C-CcHHHHHHHh-CCCcEEEEe----CCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            4456889999999999 3 3787887776 599987775    377777766532 2111            11111000


Q ss_pred             ----HHHHHHHhc-CCCCCcEEEecCCCc---------cHHHHHHhcccCCEEEEEc
Q 021311          185 ----VKNVKGLLA-NLPEPALGFNCVGGN---------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       185 ----~~~i~~~~~-~~g~~d~v~d~~g~~---------~~~~~~~~l~~~G~~v~~g  227 (314)
                          ...+..+.. ..+.+|+|+++..-.         ....+.++|+|+|++++..
T Consensus       112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence                011222221 123599999977542         1267889999999987765

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.52  E-value=0.15  Score=36.80  Aligned_cols=101  Identities=15%  Similarity=0.098  Sum_probs=64.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc-------E-------EEecC------hhhHH
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD-------E-------VFTES------QLEVK  186 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-------~-------~~~~~------~~~~~  186 (314)
                      +|-|.|- |-+|+++.+.+...+.+++.+-+.. .+.+...++.+....       .       +++..      ....+
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~-~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPF-IALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTT-SCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCC-cCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            5789998 9999999998888888887777643 355666666443221       1       11110      01112


Q ss_pred             HHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          187 NVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ++-+...   ++|+|+||+|--.. +.+...+..+.+-|++..+..+
T Consensus        80 ~i~W~~~---gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d  123 (169)
T d1dssg1          80 NIPWSKA---GAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD  123 (169)
T ss_dssp             GCCHHHH---TCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSS
T ss_pred             HCCcccc---CCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccc
Confidence            2211111   49999999998554 6667778888888888766544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.47  E-value=0.023  Score=46.07  Aligned_cols=105  Identities=15%  Similarity=0.094  Sum_probs=54.0

Q ss_pred             HHHHH-HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc---EEEecChhhHH
Q 021311          111 TALRM-LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD---EVFTESQLEVK  186 (314)
Q Consensus       111 ta~~~-l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~~~~~~~~~~~  186 (314)
                      .+|.. +.+...+.+|++||-+|+ | .|.+++.+|+ .|++.+..++.........+.++..+..   .++..+..   
T Consensus        19 ~~y~~ai~~~~~~~~~~~VLDiGc-G-~G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~---   92 (316)
T d1oria_          19 LTYRNSMFHNRHLFKDKVVLDVGS-G-TGILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVE---   92 (316)
T ss_dssp             HHHHHHHHTCHHHHTTCEEEEETC-T-TSHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTT---
T ss_pred             HHHHHHHHhccccCCcCEEEEEec-C-CcHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHH---
Confidence            34533 333344678999999998 3 2666665555 6876544555432222233333433332   22222211   


Q ss_pred             HHHHHhcCCCCCcEEEecCCC------ccH----HHHHHhcccCCEEE
Q 021311          187 NVKGLLANLPEPALGFNCVGG------NSA----SKVLKFLSQGGTMV  224 (314)
Q Consensus       187 ~i~~~~~~~g~~d~v~d~~g~------~~~----~~~~~~l~~~G~~v  224 (314)
                         ++.....++|+|+...-.      ...    ...-++|+|+|+++
T Consensus        93 ---~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          93 ---EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             ---TCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ---HcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence               111122259999753322      122    33457899999875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.42  E-value=0.13  Score=38.33  Aligned_cols=83  Identities=19%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|+|.|. |.+|..+++.+...|+++++..    .+..+......+|...+ ..++.        ...  ..|+.+=
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d----~d~~~~~~~~~~g~~~~-~~~~~--------~~~--~~DI~iP   89 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLAAEAGAQLLVAD----TDTERVAHAVALGHTAV-ALEDV--------LST--PCDVFAP   89 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEC----SCHHHHHHHHHTTCEEC-CGGGG--------GGC--CCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEec----chHHHHHHHHhhccccc-Ccccc--------ccc--cceeeec
Confidence            6799999998 9999999999999999987554    26777777777876533 22211        111  4888887


Q ss_pred             cCCCccH-HHHHHhcccCCEEE
Q 021311          204 CVGGNSA-SKVLKFLSQGGTMV  224 (314)
Q Consensus       204 ~~g~~~~-~~~~~~l~~~G~~v  224 (314)
                      |+..... ....+.++  .++|
T Consensus        90 cA~~~~I~~~~a~~i~--ak~i  109 (201)
T d1c1da1          90 CAMGGVITTEVARTLD--CSVV  109 (201)
T ss_dssp             CSCSCCBCHHHHHHCC--CSEE
T ss_pred             ccccccccHHHHhhhh--hhee
Confidence            7766444 55556554  3444

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.42  E-value=0.035  Score=41.78  Aligned_cols=69  Identities=16%  Similarity=0.252  Sum_probs=41.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      ++|||+||+|-+|...+..+...|.  ++++.++.+            +....-+.....+..++.....+  .+|.|+.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~------------~~~~~~~~~~~~d~~~~~~~~~~--~~d~vi~   68 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA------------LAEHPRLDNPVGPLAELLPQLDG--SIDTAFC   68 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC------------CCCCTTEECCBSCHHHHGGGCCS--CCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc------------hhhcccccccccchhhhhhcccc--chheeee
Confidence            7999999999999999988887776  444444321            11100111111122333333222  4899999


Q ss_pred             cCCCc
Q 021311          204 CVGGN  208 (314)
Q Consensus       204 ~~g~~  208 (314)
                      |+|..
T Consensus        69 ~~g~~   73 (212)
T d2a35a1          69 CLGTT   73 (212)
T ss_dssp             CCCCC
T ss_pred             eeeee
Confidence            99863

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.19  Score=40.63  Aligned_cols=102  Identities=16%  Similarity=0.141  Sum_probs=60.3

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEecCCCCcHHHHHHHHh---------------CCCcEEEe
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIH-SINIIRDRAGSDEAKEKLKG---------------LGADEVFT  179 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~~~~~~~~~~~~~~~---------------lg~~~~~~  179 (314)
                      +.+.++++++++||=.|+  +.|..+.++|+..++. ++++- .   ++...+.+++               .+.-..+.
T Consensus       143 ~~~~~~l~~~~~vlD~Gc--G~G~~~~~~a~~~~~~~~~Gid-~---s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGS--GVGQVVLQVAAATNCKHHYGVE-K---ADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHSCCCTTCEEEEETC--TTSHHHHHHHHHCCCSEEEEEE-C---SHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHcCCCCCCEEEEcCC--CCCHHHHHHHHHhCCCeEEEEe-C---CHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            345588999999999997  5688899999999985 55554 2   5555444422               11122232


Q ss_pred             cChhhHHHHHHHhcCCCCCcEEEecCC-C-cc----HHHHHHhcccCCEEEEEc
Q 021311          180 ESQLEVKNVKGLLANLPEPALGFNCVG-G-NS----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       180 ~~~~~~~~i~~~~~~~g~~d~v~d~~g-~-~~----~~~~~~~l~~~G~~v~~g  227 (314)
                      .+-... ...+...   .+|+|+-..- . +.    +...++.|+|||++|..-
T Consensus       217 gd~~~~-~~~~~~~---~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         217 GDFLSE-EWRERIA---NTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             CCTTSH-HHHHHHH---HCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             Cccccc-ccccccC---cceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            222111 1222111   1788874322 1 11    256778899999998754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.12  Score=41.79  Aligned_cols=81  Identities=12%  Similarity=0.121  Sum_probs=49.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC------CCCcHHHHHHHHhC--CCcEEEecChhhHHHHHHHhcCCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD------RAGSDEAKEKLKGL--GADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~------~~~~~~~~~~~~~l--g~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      ++|||+||+|-+|..++..+...|.+|+++.+.      .....+.......+  ....++..+-.+.+.+.+...+.. 
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~-   81 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS-   81 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC-
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc-
Confidence            689999999999999998888889999887421      11122333333222  122333333233445555444443 


Q ss_pred             CcEEEecCCC
Q 021311          198 PALGFNCVGG  207 (314)
Q Consensus       198 ~d~v~d~~g~  207 (314)
                      +++++.+++.
T Consensus        82 ~~~i~h~Aa~   91 (346)
T d1ek6a_          82 FMAVIHFAGL   91 (346)
T ss_dssp             EEEEEECCSC
T ss_pred             cccccccccc
Confidence            8888888764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.27  E-value=0.078  Score=38.89  Aligned_cols=82  Identities=16%  Similarity=0.227  Sum_probs=57.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...+++++.+|++++...+..  .+         +.....   +    .+.++..   ..|+|+-
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~--~~---------~~~~~~---~----~l~ell~---~sDiv~~   98 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTP--KE---------GPWRFT---N----SLEEALR---EARAAVC   98 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSC--CC---------SSSCCB---S----CSHHHHT---TCSEEEE
T ss_pred             cCceEEEecc-ccccccceeeeeccccccccccccc--cc---------cceeee---e----chhhhhh---ccchhhc
Confidence            4789999999 9999999999999999988776421  10         111111   1    1222333   3899988


Q ss_pred             cCCCc-c----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGGN-S----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~-~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      ++... .    + ...++.|+++..+|.++
T Consensus        99 ~~pl~~~t~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1          99 ALPLNKHTRGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             ccccccccccccccceeeeccccceEEecc
Confidence            77542 1    2 78889999999999876

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.26  E-value=0.038  Score=42.47  Aligned_cols=93  Identities=15%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      ..+++.+||=.|+ | .|..+..+++ .|++++++-    .++...+.+++-+....+..+...   +   .-..+.+|+
T Consensus        39 ~~~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~giD----~s~~~l~~a~~~~~~~~~~~~~~~---l---~~~~~~fD~  105 (246)
T d2avna1          39 YLKNPCRVLDLGG-G-TGKWSLFLQE-RGFEVVLVD----PSKEMLEVAREKGVKNVVEAKAED---L---PFPSGAFEA  105 (246)
T ss_dssp             HCCSCCEEEEETC-T-TCHHHHHHHT-TTCEEEEEE----SCHHHHHHHHHHTCSCEEECCTTS---C---CSCTTCEEE
T ss_pred             hcCCCCEEEEECC-C-Cchhcccccc-cceEEEEee----cccccccccccccccccccccccc---c---ccccccccc
Confidence            3567889999998 3 5888887776 488877665    378888888876665555443221   1   111125999


Q ss_pred             EEecCCC-----c---cHHHHHHhcccCCEEEEE
Q 021311          201 GFNCVGG-----N---SASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       201 v~d~~g~-----~---~~~~~~~~l~~~G~~v~~  226 (314)
                      |+.....     +   .+..+.+.|+|||.++..
T Consensus       106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence            9865542     1   136777899999998864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.063  Score=41.57  Aligned_cols=35  Identities=11%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      +.+|+|.|+ |++|..++..+...|...+.++|.+.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            389999999 99999999999999999999987654

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=94.17  E-value=0.96  Score=35.42  Aligned_cols=104  Identities=15%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-----------------
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-----------------  182 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-----------------  182 (314)
                      ..+.++++|+...+ |..|++++..|+.+|.+.++++... .++.+.+.++.+|++.++...+                 
T Consensus        55 g~~~~~~~vv~aSs-GN~g~a~A~~a~~~G~~~~i~~p~~-~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~  132 (292)
T d2bhsa1          55 GEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDN-MSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG  132 (292)
T ss_dssp             TSCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEEEESC-CCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT
T ss_pred             CCcCCCceeeeecc-cchhHHHHHHHHhcCcceEeeeccC-chhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccc
Confidence            55566666555554 9999999999999999998888664 4788889999999975542111                 


Q ss_pred             ----------h-hH--------HHHHHHhcCCCCCcEEEecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          183 ----------L-EV--------KNVKGLLANLPEPALGFNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 ----------~-~~--------~~i~~~~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                                . ..        .++.+..++  .+|.++-++|+-..    ...++.+.+..+++.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~--~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         133 EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGG--RITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             SSEECCTTTCTHHHHHHHHTHHHHHHHHTTT--CCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             cccccCCCchhcchhhHHHHHHHHhHHhcCC--CCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                      0 00        122222333  49999999887543    46667777888887665

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.09  E-value=0.076  Score=39.64  Aligned_cols=84  Identities=13%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .|++|.|+|. |.+|...+++++.+|+++++..+.....         ....  +...  ..+++   ..   ..|++.-
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~---------~~~~--~~~~--~l~~l---~~---~~D~v~~  103 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKG---------DHPD--FDYV--SLEDL---FK---QSDVIDL  103 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSS---------CCTT--CEEC--CHHHH---HH---HCSEEEE
T ss_pred             cceeeeeeec-ccccccccccccccceeeeccCCccchh---------hhcc--hhHH--HHHHH---HH---hccccee
Confidence            4689999999 9999999999999999998776421100         0000  1111  12222   22   2788877


Q ss_pred             cCCC-cc----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGG-NS----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~-~~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      +... +.    . ...++.|+++..+|.++
T Consensus       104 ~~plt~~T~~li~~~~l~~mk~~a~lIN~a  133 (199)
T d1dxya1         104 HVPGIEQNTHIINEAAFNLMKPGAIVINTA  133 (199)
T ss_dssp             CCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred             eecccccccccccHHHhhccCCceEEEecc
Confidence            6654 22    2 68889999999998876

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.033  Score=42.68  Aligned_cols=96  Identities=10%  Similarity=0.069  Sum_probs=56.4

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC----CCcEEEecChhhHHHHHHHhcCCCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL----GADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      ..+|.+||-+|+  +.|..+..+++..+.+++++- .   ++...+.+++.    +....+...  ....+...... +.
T Consensus        51 ~~~g~~VLdIGc--G~G~~a~~~a~~~~~~v~~id-~---s~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~  121 (229)
T d1zx0a1          51 SSKGGRVLEVGF--GMAIAASKVQEAPIDEHWIIE-C---NDGVFQRLRDWAPRQTHKVIPLKG--LWEDVAPTLPD-GH  121 (229)
T ss_dssp             TTTCEEEEEECC--TTSHHHHHHHTSCEEEEEEEE-C---CHHHHHHHHHHGGGCSSEEEEEES--CHHHHGGGSCT-TC
T ss_pred             ccCCCeEEEeec--cchHHHHHHHHcCCCeEEEeC-C---CHHHHHHHHHHhhhcccccccccc--ccccccccccc-cc
Confidence            478899999998  447778888876655665544 3   66677766543    222111111  11222222222 25


Q ss_pred             CcEE-EecCCCc-----------cHHHHHHhcccCCEEEEE
Q 021311          198 PALG-FNCVGGN-----------SASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       198 ~d~v-~d~~g~~-----------~~~~~~~~l~~~G~~v~~  226 (314)
                      ||.+ ||.....           .+..+.+.|+|||+++..
T Consensus       122 fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         122 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            9888 4655432           124577899999999864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.00  E-value=0.33  Score=33.43  Aligned_cols=76  Identities=13%  Similarity=0.134  Sum_probs=48.7

Q ss_pred             EEEEcCCCcHHHHHHHHHHHH-cCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARH-RGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|.|.|++|-+|...++.... .+.+.....+...    .....                      . .. ++|+++|.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----~~~~~----------------------~-~~-~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----PLSLL----------------------T-DG-NTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----CTHHH----------------------H-TT-TCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----chhhh----------------------c-cc-cCCEEEEcc
Confidence            588999999999998887654 4667776664311    00010                      1 11 388888888


Q ss_pred             CCccHHHHHHhcccCCEEEEEcCCC
Q 021311          206 GGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       206 g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ..+.+...++.....|.=+.+|..+
T Consensus        53 ~p~~~~~~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1          53 HPDVVMGNLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             CTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred             cHHHHHHHHHHHHhcCCCEEEeccc
Confidence            8777766666555555555567443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.00  E-value=0.034  Score=42.78  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++++||+|+++++|.+.++.+...|++|+++.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~   34 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLR   34 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999999999999999999988754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.91  E-value=0.069  Score=37.92  Aligned_cols=85  Identities=15%  Similarity=0.060  Sum_probs=57.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHH-HHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEK-LKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|.++|+ |.+|.+.+.-....|.++++..+    +.++.+. .+++|...+.+     .+++-+      +.|+||-|+
T Consensus         2 kIg~IG~-G~mG~al~~~l~~~~~~i~v~~r----~~~~~~~l~~~~g~~~~~~-----~~~~~~------~~dvIilav   65 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGLKQTPHELIISGS----SLERSKEIAEQLALPYAMS-----HQDLID------QVDLVILGI   65 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEEEECS----SHHHHHHHHHHHTCCBCSS-----HHHHHH------TCSEEEECS
T ss_pred             EEEEEec-cHHHHHHHHHHHhCCCeEEEEcC----hHHhHHhhccccceeeech-----hhhhhh------ccceeeeec
Confidence            4778898 99999888766666777776653    4455444 45667543321     111211      389999999


Q ss_pred             CCccHHHHHHhcccCCEEEEEc
Q 021311          206 GGNSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       206 g~~~~~~~~~~l~~~G~~v~~g  227 (314)
                      -.+.....++.++++..++.+.
T Consensus        66 kp~~~~~vl~~l~~~~~iis~~   87 (152)
T d2ahra2          66 KPQLFETVLKPLHFKQPIISMA   87 (152)
T ss_dssp             CGGGHHHHHTTSCCCSCEEECC
T ss_pred             chHhHHHHhhhcccceeEeccc
Confidence            8777788888888887777654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.82  E-value=0.18  Score=37.76  Aligned_cols=100  Identities=17%  Similarity=0.116  Sum_probs=58.6

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH----HhCCCcEEEecChhhHHHHHHHhcCC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL----KGLGADEVFTESQLEVKNVKGLLANL  195 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~----~~lg~~~~~~~~~~~~~~i~~~~~~~  195 (314)
                      ..++||++||=.|+++  |..+..+++..+...+..++-   +++..+.+    +..+....+..+.......   ....
T Consensus        52 l~lkpg~~VLDlGcG~--G~~~~~la~~v~~g~V~gvDi---s~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~---~~~~  123 (209)
T d1nt2a_          52 LKLRGDERVLYLGAAS--GTTVSHLADIVDEGIIYAVEY---SAKPFEKLLELVRERNNIIPLLFDASKPWKY---SGIV  123 (209)
T ss_dssp             CCCCSSCEEEEETCTT--SHHHHHHHHHTTTSEEEEECC---CHHHHHHHHHHHHHCSSEEEECSCTTCGGGT---TTTC
T ss_pred             CCCCCCCEEEEeCCcC--CHHHHHHHHhccCCeEEEEeC---CHHHHHHHHHHhhccCCceEEEeeccCcccc---cccc
Confidence            6789999999999844  667778888776444444443   56555544    3444333332222111111   1111


Q ss_pred             CCCcEEEecCCC-c----cHHHHHHhcccCCEEEEEc
Q 021311          196 PEPALGFNCVGG-N----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       196 g~~d~v~d~~g~-~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      ..+|+++..... .    .+.++.+.|+++|+++.+-
T Consensus       124 ~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         124 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            137777765433 2    1367778999999998763

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.77  E-value=0.22  Score=40.09  Aligned_cols=102  Identities=19%  Similarity=0.154  Sum_probs=57.8

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHHHHHh
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNVKGLL  192 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i~~~~  192 (314)
                      ..+++|++||=.++  ..|..++.+|+. |+..++.++.   ++...+.++    ..|..   ..+..+-  .+.+..+.
T Consensus       141 ~~~~~g~~VLDl~~--g~G~~si~~a~~-ga~~V~~vD~---s~~al~~a~~N~~~ngl~~~~~~~~~d~--~~~~~~~~  212 (324)
T d2as0a2         141 KWVQPGDRVLDVFT--YTGGFAIHAAIA-GADEVIGIDK---SPRAIETAKENAKLNGVEDRMKFIVGSA--FEEMEKLQ  212 (324)
T ss_dssp             GGCCTTCEEEETTC--TTTHHHHHHHHT-TCSEEEEEES---CHHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHHHHH
T ss_pred             hhcCCCCeeecccC--cccchhhhhhhc-CCcEEEeecC---CHHHHHHHHHHHHHcCCCccceeeechh--hhhhHHHH
Confidence            34688999998877  234444545544 7765555554   666666653    34442   2222221  12233332


Q ss_pred             cCCCCCcEEEecCCC---c-------------cHHHHHHhcccCCEEEEEcCC
Q 021311          193 ANLPEPALGFNCVGG---N-------------SASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~---~-------------~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      ....+||+|+-....   .             ....++++|+|||.++++.+.
T Consensus       213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            222359999853321   1             125677899999999988643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.74  E-value=0.11  Score=40.05  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=59.2

Q ss_pred             HHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCc-EEEecChhhHHHHH
Q 021311          115 MLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGAD-EVFTESQLEVKNVK  189 (314)
Q Consensus       115 ~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~-~~~~~~~~~~~~i~  189 (314)
                      .+.......++++||=.|+++  |..+..+++ .|++++++- .   ++...+.+++    .+.. ..+..+      +.
T Consensus        32 ~~~~~~~~~~~~~iLDiGcGt--G~~~~~l~~-~~~~v~gvD-~---s~~mi~~a~~~~~~~~~~i~~~~~d------~~   98 (251)
T d1wzna1          32 EIFKEDAKREVRRVLDLACGT--GIPTLELAE-RGYEVVGLD-L---HEEMLRVARRKAKERNLKIEFLQGD------VL   98 (251)
T ss_dssp             HHHHHTCSSCCCEEEEETCTT--CHHHHHHHH-TTCEEEEEE-S---CHHHHHHHHHHHHHTTCCCEEEESC------GG
T ss_pred             HHHHHhcCCCCCEEEEeCCCC--Cccchhhcc-cceEEEEEe-e---ccccccccccccccccccchheehh------hh
Confidence            344445677888999999833  777777776 578776664 3   6666666543    3332 222222      12


Q ss_pred             HHhcCCCCCcEEEecCCC----------ccHHHHHHhcccCCEEEE
Q 021311          190 GLLANLPEPALGFNCVGG----------NSASKVLKFLSQGGTMVT  225 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~----------~~~~~~~~~l~~~G~~v~  225 (314)
                      ++.... .+|+|+-..+.          ..+..+.+.|+|||.++.
T Consensus        99 ~l~~~~-~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1          99 EIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             GCCCCS-CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hccccc-ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            222222 59998865432          113577889999999876

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.64  E-value=0.41  Score=34.70  Aligned_cols=96  Identities=9%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh-hH--------HHHHHHhcCCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL-EV--------KNVKGLLANLP  196 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~~--------~~i~~~~~~~g  196 (314)
                      +|.|.|- |.+|+..++.+... ..+++++.+..  .......+...+.......+.. ..        ..+.+...   
T Consensus         3 KVaINGf-GRIGR~v~Ral~~~~dievVaInd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~---   76 (178)
T d1b7go1           3 NVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTS--PNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK---   76 (178)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSS--CSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH---
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCC--CcHHHHHhcccCcceeccCccceeccccceecCCchhhhhh---
Confidence            5789997 99999999888865 45777777653  2333344443443322211110 00        01112111   


Q ss_pred             CCcEEEecCCCccH-HHHHHhcccCCEEEEEcC
Q 021311          197 EPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       197 ~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~  228 (314)
                      ++|+|+||+|.-.. +.+...++.+-++|..+.
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence            39999999998554 555566777768777653

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.62  E-value=0.18  Score=37.24  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=56.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      |+++.|+|. |.+|...+++++.+|.+++....... ....  ... .+..   ...     .+.++..   ..|+|..+
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~-~~~~--~~~-~~~~---~~~-----~l~~ll~---~sD~v~l~  110 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRA-SSSD--EAS-YQAT---FHD-----SLDSLLS---VSQFFSLN  110 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC-CHHH--HHH-HTCE---ECS-----SHHHHHH---HCSEEEEC
T ss_pred             ccceEEeec-ccchHHHHHHHHhhcccccccccccc-ccch--hhc-cccc---ccC-----CHHHHHh---hCCeEEec
Confidence            799999999 99999999999999999987764321 1111  111 1111   011     1222222   28888876


Q ss_pred             CCC-cc----H-HHHHHhcccCCEEEEEc
Q 021311          205 VGG-NS----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~-~~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      ... +.    . ...++.|+++..+|.++
T Consensus       111 ~plt~~T~~li~~~~l~~mk~~a~lIN~s  139 (191)
T d1gdha1         111 APSTPETRYFFNKATIKSLPQGAIVVNTA  139 (191)
T ss_dssp             CCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             CCCCchHhheecHHHhhCcCCccEEEecC
Confidence            654 21    2 68889999999888876

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.62  E-value=0.16  Score=38.79  Aligned_cols=100  Identities=12%  Similarity=0.033  Sum_probs=57.7

Q ss_pred             hhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhC----CCcEEEecChhhHHHHHHHhc
Q 021311          119 FTTLNSGDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGL----GADEVFTESQLEVKNVKGLLA  193 (314)
Q Consensus       119 ~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~l----g~~~~~~~~~~~~~~i~~~~~  193 (314)
                      ...++||++||=.|+++  |..+..+++... ..++++- .   ++...+.+++.    +....+..+........   .
T Consensus        69 ~l~ikpG~~VLDlGcGs--G~~~~~la~~~~~g~V~aVD-i---S~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~---~  139 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASA--GTTPSHVADIADKGIVYAIE-Y---APRIMRELLDACAERENIIPILGDANKPQEYA---N  139 (230)
T ss_dssp             CCCCCTTCEEEEESCCS--SHHHHHHHHHTTTSEEEEEE-S---CHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT---T
T ss_pred             hCCCCCCCEEEEeCEEc--CHHHHHHHHhCCCCEEEEEe-C---cHHHHHHHHHHHhhhcccceEEEeeccCcccc---c
Confidence            36689999999999944  777888888643 3555554 3   66666655432    22222322222111111   1


Q ss_pred             CCCCCcEEEecCCCcc-----HHHHHHhcccCCEEEEEc
Q 021311          194 NLPEPALGFNCVGGNS-----ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~~-----~~~~~~~l~~~G~~v~~g  227 (314)
                      ....+|+++.......     +.++.+.|+|+|++++.-
T Consensus       140 ~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         140 IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            1112566665554321     367778999999988753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.026  Score=35.03  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=28.9

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++|.|.|+ |.+|++.++.++.+|.++.++...
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~   33 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLD   33 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTT
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCC
Confidence            57999999 999999999999999999888743

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.13  Score=39.00  Aligned_cols=106  Identities=11%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             HHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHH----HHHhCCCcEEEecCh-hhHHHHH
Q 021311          117 EDFTTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKE----KLKGLGADEVFTESQ-LEVKNVK  189 (314)
Q Consensus       117 ~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~~~~~~-~~~~~i~  189 (314)
                      ..+++...-++||-+|.  ..|+.++.+|+.+  +.+++++-.    +++..+    .++..|....+.... +..+.+.
T Consensus        52 ~~L~~~~~~k~vLEiGt--~~GyStl~~a~al~~~g~i~tie~----~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~  125 (219)
T d2avda1          52 ANLARLIQAKKALDLGT--FTGYSALALALALPADGRVVTCEV----DAQPPELGRPLWRQAEAEHKIDLRLKPALETLD  125 (219)
T ss_dssp             HHHHHHTTCCEEEEECC--TTSHHHHHHHTTSCTTCEEEEEES----CSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHccCCCeEEEEec--hhhHHHHHHHHhCCCCceEEEEee----chhHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence            34456667799999996  5688888888876  345555543    444433    334455433222211 1112233


Q ss_pred             HHh--cCCCCCcEEEecCCCcc----HHHHHHhcccCCEEEEEcC
Q 021311          190 GLL--ANLPEPALGFNCVGGNS----ASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       190 ~~~--~~~g~~d~v~d~~g~~~----~~~~~~~l~~~G~~v~~g~  228 (314)
                      +..  +..+.||+||--+.-..    ++.+++.|++||-++.-..
T Consensus       126 ~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         126 ELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             HHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             hhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            322  12235999987665543    3788999999999987553

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.20  E-value=0.45  Score=33.65  Aligned_cols=96  Identities=11%  Similarity=0.210  Sum_probs=56.0

Q ss_pred             CEEEEcCCCcHHHH-HHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQ-CIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~-~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      -++.|+|+ |.+|. ..+++++.. ..+.+.+++.+. ......+++++|......    ..+.+.+...-. ++|+||+
T Consensus         5 irvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~-~~~~~~~a~~~~i~~~~~----~~d~l~~~~~~~-~iDiVf~   77 (157)
T d1nvmb1           5 LKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDA-ASDGLARAQRMGVTTTYA----GVEGLIKLPEFA-DIDFVFD   77 (157)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCT-TCHHHHHHHHTTCCEESS----HHHHHHHSGGGG-GEEEEEE
T ss_pred             cEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecch-hccchhhhhhcCCccccc----ceeeeeeccccc-ccCEEEE
Confidence            46889995 88886 566777765 446667765321 223456677777654321    122332221111 3999999


Q ss_pred             cCCCcc-HH--HHHHhcccCCEEEEEcC
Q 021311          204 CVGGNS-AS--KVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       204 ~~g~~~-~~--~~~~~l~~~G~~v~~g~  228 (314)
                      ++.... ..  ...+.++.|-.++....
T Consensus        78 ATpag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          78 ATSASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             cCCchhHHHhHHHHHHHHcCCEEEEccc
Confidence            987532 33  44555677777776653

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.31  Score=34.86  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCC-------cE-------EEecC------hhhH
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGA-------DE-------VFTES------QLEV  185 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~-------~~-------~~~~~------~~~~  185 (314)
                      +|.|.|- |-+|+++.+.+.... .+++++-+.  .+.+...++.+...       ..       +++..      ...+
T Consensus         3 kigINGF-GRIGR~v~R~~~~~~~i~ivaINd~--~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p   79 (166)
T d1gado1           3 KVGINGF-GRIGRIVFRAAQKRSDIEIVAINDL--LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCSSEEEEEEECS--SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCC--CCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence            5789998 999999998887653 566666654  36666666654322       11       11110      1111


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          186 KNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      +++-+...   ++|+|+||+|--.. +.+...+..+.+-|++..+..+
T Consensus        80 ~~i~W~~~---gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d  124 (166)
T d1gado1          80 ANLKWDEV---GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD  124 (166)
T ss_dssp             GGGCHHHH---TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS
T ss_pred             HHCCcccc---CCCEEEEccccccCHHHHHHHhcCCCceEEeeccccc
Confidence            22221111   49999999998655 5666778888777778766554

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.14  E-value=0.022  Score=41.80  Aligned_cols=42  Identities=19%  Similarity=0.071  Sum_probs=28.0

Q ss_pred             HHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          114 RMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       114 ~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .+|.+...--.|++|||.|+ |+.+.+++..+...| ++.++.|
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR   48 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANR   48 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECS
T ss_pred             HHHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehh
Confidence            34444343457899999999 888988876665544 5544443

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.97  E-value=0.43  Score=34.21  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=61.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCc-------EEE-------ecC------hhhH
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGAD-------EVF-------TES------QLEV  185 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~-------~~~-------~~~------~~~~  185 (314)
                      +|.|.|- |.+|+++.+.+... ..+++.+-+.. .+.+...++.+....       .-+       +..      ....
T Consensus         3 kIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~~-~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p   80 (169)
T d1u8fo1           3 KVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPF-IDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   80 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSS-SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-cHHHHHHHHHHHHCCCcEEEEecCCC-ccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence            6889998 99999999777654 46776666532 356666666443221       111       111      0111


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          186 KNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      +++.+  ... ++|+|+||+|.-.. +.+...+..+.+-|++..+..+
T Consensus        81 ~~i~W--~~~-~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d  125 (169)
T d1u8fo1          81 SKIKW--GDA-GAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD  125 (169)
T ss_dssp             GGCCT--TTT-TCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSS
T ss_pred             hhCCc--ccc-CCCEEEEecceeccHHHHHHHHhcCCceEeecccccc
Confidence            22211  112 49999999998554 5666678888877878766544

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.73  E-value=0.35  Score=38.04  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .|++|+|.|- |.+|..+++.+...|++++++.+.
T Consensus        35 ~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          35 GDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcc
Confidence            5789999999 999999999999999999998864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=92.71  E-value=0.16  Score=37.36  Aligned_cols=88  Identities=14%  Similarity=0.074  Sum_probs=57.2

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .+.++.|.|. |.+|...++.++.+|.+++...+..  ....  ..+..+...   ..     .+.+...   ..|+|.-
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~--~~~~--~~~~~~~~~---~~-----~l~~~l~---~sD~v~~  106 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR--LPES--VEKELNLTW---HA-----TREDMYP---VCDVVTL  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC--CCHH--HHHHHTCEE---CS-----SHHHHGG---GCSEEEE
T ss_pred             cccceeeccc-cccchhhhhhhhccCceEEEEeecc--cccc--ccccccccc---cC-----CHHHHHH---hccchhh
Confidence            5789999999 9999999999999999988877532  1211  111222111   11     1222222   2888877


Q ss_pred             cCCC-cc----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGG-NS----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~-~~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      +... +.    . ...++.|+++..+|.++
T Consensus       107 ~~plt~~T~~li~~~~l~~mk~ga~lIN~a  136 (188)
T d2naca1         107 NCPLHPETEHMINDETLKLFKRGAYIVNTA  136 (188)
T ss_dssp             CSCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             cccccccchhhhHHHHHHhCCCCCEEEecC
Confidence            6653 21    2 68888898888888776

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.68  E-value=0.48  Score=33.85  Aligned_cols=101  Identities=14%  Similarity=0.051  Sum_probs=61.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCc-------E-------EEec------ChhhH
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGAD-------E-------VFTE------SQLEV  185 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~-------~-------~~~~------~~~~~  185 (314)
                      +|-|.|- |-+|+++.+.+... ..+++.+-++. .+.+...++.+....       .       .++.      ....+
T Consensus         2 kigINGf-GRIGR~v~R~~~~~~~~~iv~INd~~-~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           2 KLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPF-MDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTT-CCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred             eEEEECC-CHHHHHHHHHHhhCCCcEEEEECCCC-CChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence            5789999 99999999887754 45655555432 356667777443221       1       1111      11112


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          186 KNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      .++-+...   ++|+|+||+|.-.. +.+...+..+.+-|.+..+..+
T Consensus        80 ~~i~W~~~---gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd  124 (166)
T d2b4ro1          80 SQIPWGKC---QVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKD  124 (166)
T ss_dssp             GGCCHHHH---TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS
T ss_pred             HHcccccc---CCCEEEEecccccchhhhhhhhccCCCEEEEeccccc
Confidence            22211111   49999999998554 5666778888877778766553

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.67  E-value=0.4  Score=34.37  Aligned_cols=100  Identities=14%  Similarity=0.111  Sum_probs=61.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc---CCcEEEEecCCCCcHHHHHHHHhCCC-------cE-------EEecC------hh
Q 021311          127 SIVQNGATSIVGQCIIQIARHR---GIHSINIIRDRAGSDEAKEKLKGLGA-------DE-------VFTES------QL  183 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~---g~~vi~~~~~~~~~~~~~~~~~~lg~-------~~-------~~~~~------~~  183 (314)
                      +|.|.|- |-+|.++.+.+...   ..+++.+-+.  .+.+...++.+...       ..       +++..      ..
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~--~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~   78 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDL--TDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEP   78 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECS--SCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCS
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccC--ccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCC
Confidence            6789998 99999999877542   3567766654  36677777754322       11       11110      11


Q ss_pred             hHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          184 EVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       184 ~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      .++++.+.-.   ++|+|+||+|--.. +.+...+..+.+-|++..+..+
T Consensus        79 ~p~~i~W~~~---gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd  125 (169)
T d1hdgo1          79 DPSKLPWKDL---GVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKG  125 (169)
T ss_dssp             SGGGSCHHHH---TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS
T ss_pred             ChhhCCcccc---CCCEEEEecceeccccchhhhccCCCceEEEecccCC
Confidence            1122211111   49999999998544 6666778888766777766543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.042  Score=38.82  Aligned_cols=92  Identities=14%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             CEEEEcCCCcHHHHHHHHH-HHHcC---CcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          126 DSIVQNGATSIVGQCIIQI-ARHRG---IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~l-a~~~g---~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      ++|.|.||+|.+|+-.+++ +.+..   .+.......+  +..+ ..........+.+..+  ....    .   ++|++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~--s~g~-~~~~~~~~~~~~~~~~--~~~~----~---~~Div   69 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ--LGQA-APSFGGTTGTLQDAFD--LEAL----K---ALDII   69 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS--TTSB-CCGGGTCCCBCEETTC--HHHH----H---TCSEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc--cccc-cccccCCceeeecccc--hhhh----h---cCcEE
Confidence            3688999999999999974 44322   2333333221  1100 0000011111111111  1111    1   49999


Q ss_pred             EecCCCccHHHHHHhcccCC---EEEEEcCC
Q 021311          202 FNCVGGNSASKVLKFLSQGG---TMVTYGGM  229 (314)
Q Consensus       202 ~d~~g~~~~~~~~~~l~~~G---~~v~~g~~  229 (314)
                      |-|++.+........+...|   .++..++.
T Consensus        70 F~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~  100 (146)
T d1t4ba1          70 VTCQGGDYTNEIYPKLRESGWQGYWIDAASS  100 (146)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred             EEecCchHHHHhhHHHHhcCCCeecccCCcc
Confidence            99999988766555554433   46666543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.012  Score=42.66  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHH--HH---HhCCCcEEEecChhhHHHHHHHhcCCCCCcE
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKE--KL---KGLGADEVFTESQLEVKNVKGLLANLPEPAL  200 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~--~~---~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~  200 (314)
                      +|.|.|++|-+|++.++++... ++++....+.+....-..+  .+   ...+.. +.+..+    .+   . .  .+|+
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~-~~~~~~----~~---~-~--~~DV   74 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVT-VQSSLD----AV---K-D--DFDV   74 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCC-EESCST----TT---T-T--SCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCce-eeccHH----HH---h-c--ccce
Confidence            6899999999999999988765 6666666643211100000  00   001110 111111    11   1 1  4899


Q ss_pred             EEecCCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          201 GFNCVGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       201 v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      ++|.+..+.+...++.....+.=+.+|..+
T Consensus        75 iIDFs~p~~~~~~~~~a~~~~~~~ViGTTG  104 (162)
T d1diha1          75 FIDFTRPEGTLNHLAFCRQHGKGMVIGTTG  104 (162)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             EEEeccHHHHHHHHHHHHhccceeEEecCC
Confidence            999988877777777777777777788544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.071  Score=38.20  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=52.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc--EEEec-ChhhHHHHHHHhcCCCCCcEEEe
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD--EVFTE-SQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~~~-~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      +|+|+|+ |.+|.+....+...|.+|..+.+.....    +.....+.+  ..... .....+.+    .   .+|++|-
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~D~iii   69 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY----CSVNLVETDGSIFNESLTANDPDFL----A---TSDLLLV   69 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE----EEEEEECTTSCEEEEEEEESCHHHH----H---TCSEEEE
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh----hhhccccCCccccccccccchhhhh----c---ccceEEE
Confidence            6899999 9999999888888899998888643211    111111111  00000 00011111    1   4999999


Q ss_pred             cCCCccHHHHHH----hcccCCEEEEEc
Q 021311          204 CVGGNSASKVLK----FLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~~~~~~~~~----~l~~~G~~v~~g  227 (314)
                      ++-......+++    .+.++..++.+.
T Consensus        70 ~vka~~~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          70 TLKAWQVSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             CSCGGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred             eecccchHHHHHhhccccCcccEEeecc
Confidence            999876644443    445566666664

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.21  Score=36.65  Aligned_cols=84  Identities=12%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      .++++.|+|. |.+|...+++++.+|++++.........           ........  ..+++   ..   ..|++.-
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~-----------~~~~~~~~--~l~el---l~---~sDii~i  102 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLP-----------LGNATQVQ--HLSDL---LN---MSDVVSL  102 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCC-----------CTTCEECS--CHHHH---HH---HCSEEEE
T ss_pred             cceEEEEeec-ccchhhhhhhcccccceEeeccccccch-----------hhhhhhhh--hHHHH---Hh---hccceee
Confidence            5789999999 9999999999999999999887432100           00111111  12222   22   2788888


Q ss_pred             cCCC-cc----H-HHHHHhcccCCEEEEEc
Q 021311          204 CVGG-NS----A-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       204 ~~g~-~~----~-~~~~~~l~~~G~~v~~g  227 (314)
                      +..- +.    + ...++.|+++..+|.++
T Consensus       103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~a  132 (188)
T d1sc6a1         103 HVPENPSTKNMMGAKEISLMKPGSLLINAS  132 (188)
T ss_dssp             CCCSSTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred             cccCCcchhhhccHHHHhhCCCCCEEEEcC
Confidence            7653 21    2 78899999999998876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.50  E-value=0.19  Score=33.80  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +.....++++++|.|+ |.+|.-+++.++.+|.++..+.+.
T Consensus        15 ~~l~~~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~   54 (121)
T d1mo9a2          15 EELDYEPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRT   54 (121)
T ss_dssp             HHCCSCCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             HHHhhCCCCEEEEECC-CHHHHHHHHHHHhcchhheEeecc
Confidence            3356778999999999 999999999999999998887753

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.49  E-value=0.91  Score=32.70  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=73.7

Q ss_pred             EEEEcCCCcHHHHH-HHHHHHHcC--CcEEEEecCCCCcHHHHHH-HHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          127 SIVQNGATSIVGQC-IIQIARHRG--IHSINIIRDRAGSDEAKEK-LKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       127 ~vlI~g~~g~~G~~-a~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      ++.|+|. |.+|.- .+...+..+  .+++++++.   ++++.+. .+.++...+++.       +.++.... .+|+|+
T Consensus         5 rigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~---~~~~~~~~~~~~~~~~~~~~-------~~ell~~~-~id~v~   72 (181)
T d1zh8a1           5 RLGIVGC-GIAARELHLPALKNLSHLFEITAVTSR---TRSHAEEFAKMVGNPAVFDS-------YEELLESG-LVDAVD   72 (181)
T ss_dssp             EEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECS---SHHHHHHHHHHHSSCEEESC-------HHHHHHSS-CCSEEE
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEec---cHhhhhhhhccccccceeee-------eecccccc-ccceee
Confidence            6789998 888864 466666543  467777765   4444443 455666554422       22233333 499999


Q ss_pred             ecCCCccH-HHHHHhcccCCEEEEEcCCCCCCc-c-cccccce-ecceEEEEEechhhccccCHHHHHHHHHHHHHHHHc
Q 021311          203 NCVGGNSA-SKVLKFLSQGGTMVTYGGMSKKPI-T-VSTSAFI-FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLARE  278 (314)
Q Consensus       203 d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (314)
                      .|+....- +.+..++..+ +-|++.-+..... . ....... .++..+.-....++      ..+...+..+.+++++
T Consensus        73 I~tp~~~h~~~~~~al~~g-k~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~------~~~~~~~~~~~~~i~~  145 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKG-VHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRE------NSYQKEFEDFYQVVAE  145 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTT-CEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGC------CHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccccccc-hhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccc------cccCHHHHHHHHHHHC
Confidence            99877553 5666666665 5566642221111 0 0111121 12333322111111      1234567788899999


Q ss_pred             CCcc
Q 021311          279 GKLK  282 (314)
Q Consensus       279 g~~~  282 (314)
                      |++-
T Consensus       146 G~ig  149 (181)
T d1zh8a1         146 GKPN  149 (181)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9774

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.49  E-value=0.58  Score=32.52  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=28.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI-HSINIIRDR  159 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~~  159 (314)
                      .+|.|.||+|.+|..++.++...+. ..+...+.+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            4789999889999999998888776 788888753

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.075  Score=43.10  Aligned_cols=31  Identities=6%  Similarity=0.128  Sum_probs=25.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC-CcEEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG-IHSINIIR  157 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~  157 (314)
                      +|||+|++|-+|..+++.+...| .+++++..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            59999999999999998777777 56776653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.39  E-value=0.42  Score=34.46  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=33.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG  173 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg  173 (314)
                      .+|-++|. |.+|...+.-+...|.++++.-+    ++++.+.+.+.+
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr----~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNR----TVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECS----STHHHHHHHHTT
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcC----CHHHHHHHHHhc
Confidence            46889999 99999998888888999987764    566666665443

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.61  Score=37.41  Aligned_cols=114  Identities=14%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             HHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh---------
Q 021311          112 ALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ---------  182 (314)
Q Consensus       112 a~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~---------  182 (314)
                      |++.+.....-.+..+|+... +|..|.+++..|+..|...++++... .+..+.+.++.+|++.+....+         
T Consensus        62 a~~~i~~~~~~~~~~~vv~as-sGN~g~a~A~~a~~~g~~~~i~~p~~-~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~  139 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITAS-AGNHAQGVAFSSARLGVKALIVMPTA-TADIKVDAVRGFGGEVLLHGANFDEAKAKAI  139 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEE-CSSSHHHHHHHHHHTTCCEEEECCSS-CCHHHHHHHHHHSCEEECCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecc-cchhHHHHHHhhccccccceeecccc-chhHHHHHHHhcCCEEEEcCcccccchhhhh
Confidence            455555534344455555544 48999999999999999998888554 4778888999999976543211         


Q ss_pred             ----------------hh-H---H-HHHHHhcCCCCCcEEEecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          183 ----------------LE-V---K-NVKGLLANLPEPALGFNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 ----------------~~-~---~-~i~~~~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                                      .. .   . ...++....+.+|.+|-++|+-..    ...++.+.+..+++.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve  209 (331)
T d1tdja1         140 ELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE  209 (331)
T ss_dssp             HHHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hhhhcCCCccccccCChHHhhhhhhHHHHHHHhcCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence                            00 0   0 011112222359999999988543    46666777888888775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.26  E-value=0.67  Score=29.65  Aligned_cols=74  Identities=11%  Similarity=0.035  Sum_probs=49.9

Q ss_pred             cCCCCCEEEEcCCCcHHHHHH-HHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          121 TLNSGDSIVQNGATSIVGQCI-IQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a-~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      ..+..+++.+.|- |+.|..+ +++++..|..|...-..   .....+.+.+.|......+.....+          +.|
T Consensus         4 ~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~---~~~~~~~L~~~Gi~v~~g~~~~~i~----------~~d   69 (96)
T d1p3da1           4 EMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIA---DGVVTQRLAQAGAKIYIGHAEEHIE----------GAS   69 (96)
T ss_dssp             CCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESC---CSHHHHHHHHTTCEEEESCCGGGGT----------TCS
T ss_pred             cchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCC---CChhhhHHHHCCCeEEECCccccCC----------CCC
Confidence            3566789999998 7778666 78999999999877643   3444556667887654444433211          388


Q ss_pred             EEEecCCCc
Q 021311          200 LGFNCVGGN  208 (314)
Q Consensus       200 ~v~d~~g~~  208 (314)
                      +|+-+.+-+
T Consensus        70 ~vV~S~AI~   78 (96)
T d1p3da1          70 VVVVSSAIK   78 (96)
T ss_dssp             EEEECTTSC
T ss_pred             EEEECCCcC
Confidence            887666644

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.25  E-value=0.78  Score=34.78  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHH-HHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIA-RHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la-~~~g~~vi~~~~~  158 (314)
                      -.+.+|+|.|. |.+|..+++.+ +..|++++++.+.
T Consensus        29 l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          29 PKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeecC
Confidence            46899999998 99999999877 5689999988754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.23  E-value=0.43  Score=33.82  Aligned_cols=85  Identities=12%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|-|+|. |.+|...+.-+...|.++++.-+    ++++.+.+.+.+... .+...    ++   ..   ..|++|-|+.
T Consensus         2 kIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~----~~~~~~~~~~~~~~~-~~~~~----e~---~~---~~d~ii~~v~   65 (161)
T d1vpda2           2 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDR----NPEAIADVIAAGAET-ASTAK----AI---AE---QCDVIITMLP   65 (161)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHTTCEE-CSSHH----HH---HH---HCSEEEECCS
T ss_pred             EEEEEeh-hHHHHHHHHHHHHCCCeEEEEeC----CcchhHHHHHhhhhh-cccHH----HH---Hh---CCCeEEEEcC
Confidence            4778898 99999998878788999887653    677778877777632 21111    11   11   2777777776


Q ss_pred             CccH-HH-------HHHhcccCCEEEEEc
Q 021311          207 GNSA-SK-------VLKFLSQGGTMVTYG  227 (314)
Q Consensus       207 ~~~~-~~-------~~~~l~~~G~~v~~g  227 (314)
                      .+.. ..       .+..++++-.++.++
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid~s   94 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLIDMS   94 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEECC
Confidence            5332 21       344555666666655

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.22  E-value=0.17  Score=37.08  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d  203 (314)
                      =+|.|.|++|-+|+-+++++..+ ..+...++..+ ......+.. ..+.......... .   ......   +.|++|-
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~-~aG~~~~~~~~~~~~~~~~~~~~-~---~~~~~~---~~Dvvf~   77 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADR-KAGEQFGSVFPHLITQDLPNLVA-V---KDADFS---NVDAVFC   77 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECST-TTTSCHHHHCGGGTTSCCCCCBC-G---GGCCGG---GCSEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccc-cCCCccccccccccccccccchh-h---hhhhhc---ccceeee
Confidence            36799999999999999999876 33544444221 122222222 1111100000000 0   000011   4999999


Q ss_pred             cCCCccHHHHHHhcccCCEEEEEcC
Q 021311          204 CVGGNSASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       204 ~~g~~~~~~~~~~l~~~G~~v~~g~  228 (314)
                      |............+...+.++....
T Consensus        78 alp~~~s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          78 CLPHGTTQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             CCSSSHHHHHHHTSCSSCEEEECSS
T ss_pred             ccccchHHHHHHHHHhcCcccccch
Confidence            9999888777788888898887663

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.12  E-value=0.44  Score=34.55  Aligned_cols=88  Identities=10%  Similarity=0.027  Sum_probs=55.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHH-HHHHhCCCc---EEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAK-EKLKGLGAD---EVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~-~~~~~lg~~---~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      ++.|+|+ |.+|...++.++.. +++++++++.   ++++. ...+.++..   .++  +     .+.++.... .+|+|
T Consensus         3 ki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~---~~~~~~~~~~~~~~~~~~~~~--~-----~~~~ll~~~-~iD~v   70 (184)
T d1ydwa1           3 RIGVMGC-ADIARKVSRAIHLAPNATISGVASR---SLEKAKAFATANNYPESTKIH--G-----SYESLLEDP-EIDAL   70 (184)
T ss_dssp             EEEEESC-CTTHHHHHHHHHHCTTEEEEEEECS---SHHHHHHHHHHTTCCTTCEEE--S-----SHHHHHHCT-TCCEE
T ss_pred             EEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeC---Cccccccchhccccccceeec--C-----cHHHhhhcc-cccee
Confidence            5788998 88998888777765 6688878765   44443 334555532   122  1     233333333 49999


Q ss_pred             EecCCCcc-HHHHHHhcccCCEEEEEc
Q 021311          202 FNCVGGNS-ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~-~~~~~~~l~~~G~~v~~g  227 (314)
                      +.|+.... ++.+..++..+ .-|++.
T Consensus        71 ~I~tp~~~h~~~~~~~l~~g-~~v~~E   96 (184)
T d1ydwa1          71 YVPLPTSLHVEWAIKAAEKG-KHILLE   96 (184)
T ss_dssp             EECCCGGGHHHHHHHHHTTT-CEEEEC
T ss_pred             eecccchhhcchhhhhhhcc-ceeecc
Confidence            99887755 36777777765 555564

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.00  E-value=0.2  Score=37.57  Aligned_cols=93  Identities=10%  Similarity=0.068  Sum_probs=56.4

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcE-EEecChhhHHHHHHHhcCC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADE-VFTESQLEVKNVKGLLANL  195 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~-~~~~~~~~~~~i~~~~~~~  195 (314)
                      .++++.+||=+|+++  |..+..+++. |++++++- .   ++...+.++    ..+... .+..+..      ++....
T Consensus        34 ~l~~~~~ILDiGcG~--G~~~~~la~~-~~~v~giD-~---S~~~i~~ak~~~~~~~~~~~~~~~d~~------~l~~~~  100 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV--GGFSFLLEDY-GFEVVGVD-I---SEDMIRKAREYAKSRESNVEFIVGDAR------KLSFED  100 (226)
T ss_dssp             SCCSCCEEEEETCTT--SHHHHHHHHT-TCEEEEEE-S---CHHHHHHHHHHHHHTTCCCEEEECCTT------SCCSCT
T ss_pred             hcCCCCEEEEECCCc--chhhhhHhhh-hccccccc-c---cccchhhhhhhhccccccccccccccc------cccccC
Confidence            468899999999933  7777777764 77776655 2   666665554    333221 1211111      111111


Q ss_pred             CCCcEEEecCCCc---------cHHHHHHhcccCCEEEEE
Q 021311          196 PEPALGFNCVGGN---------SASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       196 g~~d~v~d~~g~~---------~~~~~~~~l~~~G~~v~~  226 (314)
                      +.+|+|+-...-.         .+..+.+.|+|||++++.
T Consensus       101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            2599998655432         135778899999998764

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.97  E-value=0.48  Score=34.05  Aligned_cols=100  Identities=16%  Similarity=0.093  Sum_probs=59.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC---CcEEEEecCCCCcHHHHHHHHhCCC-------c-------E-EEecC------h
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG---IHSINIIRDRAGSDEAKEKLKGLGA-------D-------E-VFTES------Q  182 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g---~~vi~~~~~~~~~~~~~~~~~~lg~-------~-------~-~~~~~------~  182 (314)
                      +|.|.|- |-+|.++.+.+....   .+++.+-+.  .+.+...++.+...       .       . +++..      .
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~--~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~   78 (172)
T d1rm4a1           2 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDT--GGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD   78 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECT--TCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCC--CCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecC
Confidence            5789998 999999998765433   455555554  35666666643322       1       1 11111      0


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCcc-HHHHHHhcccCCEEEEEcCCCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNS-ASKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ..++++.+...   ++|+|+||+|.-. .+.+...|..|.+-|++..+..+
T Consensus        79 ~~p~~i~W~~~---gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k~  126 (172)
T d1rm4a1          79 RNPVNLPWGDM---GIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKG  126 (172)
T ss_dssp             SCGGGSCHHHH---TCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCBS
T ss_pred             CChHHCChhhc---CCCEEEecCceEccHHHHHHHHhcCCceEEeeccccc
Confidence            11122211111   4999999999844 46667778888766777766543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.96  E-value=0.23  Score=38.15  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      -.|++|+|.|. |.+|..+++++...|++++++.+.
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            47899999999 999999999999999999988864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.88  E-value=0.11  Score=40.17  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=29.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +.|||+|+++++|.+.++.+...|++++++.+.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~   34 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIR   34 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            468999999999999999999999999887753

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.87  E-value=2.4  Score=33.59  Aligned_cols=105  Identities=15%  Similarity=0.121  Sum_probs=73.6

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecCh-----------------
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQ-----------------  182 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-----------------  182 (314)
                      ..++++...+|...+|..|.+++..|+.+|.+.++++... .+..+++.++.+|++.+.....                 
T Consensus        59 g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~-~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~  137 (320)
T d1z7wa1          59 GLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPAS-MSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKT  137 (320)
T ss_dssp             TSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETT-SCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhh-hhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhC
Confidence            5566777777777779999999999999999988887554 4788889999999976542110                 


Q ss_pred             -----------h-hH--------HHHHHHhcCCCCCcEEEecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          183 -----------L-EV--------KNVKGLLANLPEPALGFNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       183 -----------~-~~--------~~i~~~~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                                 . ++        .++.+...+  .+|.++-++|+-..    ...++...+.-+++-+.
T Consensus       138 ~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~--~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve  204 (320)
T d1z7wa1         138 PNGYMLQQFENPANPKIHYETTGPEIWKGTGG--KIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVE  204 (320)
T ss_dssp             TTEEECCTTTCTHHHHHHHHTHHHHHHHHTTT--CCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCceecccccccchHHHhhhhHHHHHHHhccC--CCCEEEeCCCCCcccchhhhhhhhhhcceeeeccc
Confidence                       0 00        122333322  59999999988543    45666677777877664

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.82  E-value=0.45  Score=33.28  Aligned_cols=80  Identities=19%  Similarity=0.135  Sum_probs=48.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhh--HHHHHHHhcCCCCCcEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE--VKNVKGLLANLPEPALGFN  203 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~--~~~i~~~~~~~g~~d~v~d  203 (314)
                      ++|.|+|+.|.+|...+..++..|.++.+.-+...    ........+++.++......  .+.+.+......+=.+++|
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW----AVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG----GGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc----cccchhhhhccccccccchhhheeeeecccccccCCceEEE
Confidence            68999996699999999999999999988875421    11222234556655543321  1223333222111247888


Q ss_pred             cCCCcc
Q 021311          204 CVGGNS  209 (314)
Q Consensus       204 ~~g~~~  209 (314)
                      +++...
T Consensus        86 ~~Svk~   91 (152)
T d2pv7a2          86 LTSVKR   91 (152)
T ss_dssp             CCSCCH
T ss_pred             ecccCH
Confidence            877643

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=91.79  E-value=0.39  Score=34.61  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=60.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc----CCcEEEEecCCCCcHHHHHHHHhCC-------CcE-------EEecC------h
Q 021311          127 SIVQNGATSIVGQCIIQIARHR----GIHSINIIRDRAGSDEAKEKLKGLG-------ADE-------VFTES------Q  182 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~----g~~vi~~~~~~~~~~~~~~~~~~lg-------~~~-------~~~~~------~  182 (314)
                      +|.|.|- |-+|.++.+.+...    ..+++++-+.  .+.+...++.+..       ...       +++..      .
T Consensus         3 kigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~--~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~   79 (173)
T d1obfo1           3 RVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDL--GDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN   79 (173)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECS--SCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCC--CChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence            5789998 99999998776542    2345555543  3566666664322       211       11110      0


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      ..++++-+  ... ++|+|+||+|.-.. +.+...|..+.+-|++..+..+
T Consensus        80 ~~p~~i~W--~~~-gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~  127 (173)
T d1obfo1          80 RNPAQLPW--GAL-KVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGA  127 (173)
T ss_dssp             SCGGGSCT--TTT-TCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCT
T ss_pred             CCHHHCcc--ccc-ccceEEEecccccCHHHHHHHhccCCcceEEecCCCC
Confidence            11122211  112 49999999997444 6777888888888888866554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.78  E-value=0.095  Score=42.43  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=52.5

Q ss_pred             HHHH-HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc---EEEecChhhHHH
Q 021311          112 ALRM-LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD---EVFTESQLEVKN  187 (314)
Q Consensus       112 a~~~-l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~~~~~~~~~~~~  187 (314)
                      +|+. +.+.....+|++||-.|++  .|..+..+| ..|++.+..++........++..+..+..   .++..+..    
T Consensus        25 ~y~~aI~~~~~~~~~~~VLDlGcG--tG~ls~~aa-~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~----   97 (328)
T d1g6q1_          25 SYRNAIIQNKDLFKDKIVLDVGCG--TGILSMFAA-KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE----   97 (328)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEETCT--TSHHHHHHH-HTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT----
T ss_pred             HHHHHHHhccccCCcCEEEEeCCC--CCHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehh----
Confidence            4433 3333456789999999983  355555444 46886666665422112223333444432   22222211    


Q ss_pred             HHHHhcCCCCCcEEEecCCC------ccH----HHHHHhcccCCEEE
Q 021311          188 VKGLLANLPEPALGFNCVGG------NSA----SKVLKFLSQGGTMV  224 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~------~~~----~~~~~~l~~~G~~v  224 (314)
                        ++.....++|+|+...-.      ...    ...-+.|+|+|.++
T Consensus        98 --~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          98 --DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             --TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             --hccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence              111111259998763322      122    23337899999874

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.35  Score=38.86  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=29.2

Q ss_pred             CEE-EEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          126 DSI-VQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       126 ~~v-lI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++| ||+|++|-+|..++..+...|.+|+++.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            357 999999999999999888889999998864

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.66  E-value=0.065  Score=42.23  Aligned_cols=63  Identities=22%  Similarity=0.157  Sum_probs=37.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      +|||+|++|-+|..++..+...| +++.+...   +.       .+-    .|-.  +.+.+.+...+. ++|+||.|++
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g-~~v~~~~~---~~-------~~~----~Dl~--~~~~~~~~i~~~-~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG-NLIALDVH---SK-------EFC----GDFS--NPKGVAETVRKL-RPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS-EEEEECTT---CS-------SSC----CCTT--CHHHHHHHHHHH-CCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC-CEEEEECC---Cc-------ccc----CcCC--CHHHHHHHHHHc-CCCEEEEecc
Confidence            59999999999999988776666 34444322   11       011    1111  223344433333 3899999997


Q ss_pred             C
Q 021311          207 G  207 (314)
Q Consensus       207 ~  207 (314)
                      .
T Consensus        64 ~   64 (298)
T d1n2sa_          64 H   64 (298)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.52  E-value=1  Score=32.38  Aligned_cols=86  Identities=9%  Similarity=0.020  Sum_probs=49.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE----EecCh-hhHHHHHHHhcCCCCCcEE
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV----FTESQ-LEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~----~~~~~-~~~~~i~~~~~~~g~~d~v  201 (314)
                      +|.|+|+ |.+|.+.+..+...|-+|..+.+..  .++..+.+..-.....    +.... .....+.+...   ..|+|
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~--~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~ad~I   75 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEF--DTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE---NAEVV   75 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGG--GHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT---TCSEE
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEecc--cHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh---ccchh
Confidence            5889999 9999999988888888888887431  2333333322211000    00000 00012222222   38999


Q ss_pred             EecCCCccHHHHHHhcc
Q 021311          202 FNCVGGNSASKVLKFLS  218 (314)
Q Consensus       202 ~d~~g~~~~~~~~~~l~  218 (314)
                      +.++........++.+.
T Consensus        76 i~avps~~~~~~~~~l~   92 (180)
T d1txga2          76 LLGVSTDGVLPVMSRIL   92 (180)
T ss_dssp             EECSCGGGHHHHHHHHT
T ss_pred             hcccchhhhHHHHHhhc
Confidence            99999877755555443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=91.51  E-value=0.43  Score=37.06  Aligned_cols=95  Identities=13%  Similarity=0.034  Sum_probs=60.9

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCc-EEEecChhhHHHHHHHhcCCCCC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGAD-EVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      ...++.+||=+|++  .|..+..+++.. +.+++++- .   ++...+.+++.... .....+..      ++.-..+.+
T Consensus        81 ~~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~~~giD-~---s~~~~~~a~~~~~~~~~~~~d~~------~l~~~~~sf  148 (268)
T d1p91a_          81 LDDKATAVLDIGCG--EGYYTHAFADALPEITTFGLD-V---SKVAIKAAAKRYPQVTFCVASSH------RLPFSDTSM  148 (268)
T ss_dssp             SCTTCCEEEEETCT--TSTTHHHHHHTCTTSEEEEEE-S---CHHHHHHHHHHCTTSEEEECCTT------SCSBCTTCE
T ss_pred             cCCCCCEEEEeCCC--CcHHHHHHHHHCCCCEEEEec-c---hHhhhhhhhcccccccceeeehh------hccCCCCCE
Confidence            35677899999983  366677777765 45665554 3   67777777653322 22212211      111111249


Q ss_pred             cEEEecCCCccHHHHHHhcccCCEEEEEc
Q 021311          199 ALGFNCVGGNSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       199 d~v~d~~g~~~~~~~~~~l~~~G~~v~~g  227 (314)
                      |+|+.......+.++.+.|+|+|.++...
T Consensus       149 D~v~~~~~~~~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         149 DAIIRIYAPCKAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEEEESCCCCHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeecCCHHHHHHHHHHhCCCcEEEEEe
Confidence            99998776667788999999999999875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.45  E-value=0.25  Score=33.12  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++..++++|.|+ |.+|.-++..++.+|.++..+.+.
T Consensus        18 ~l~~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~   54 (117)
T d1onfa2          18 NIKESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARG   54 (117)
T ss_dssp             TCCCCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             ccCCCCEEEEECC-chHHHHHHHHHHhccccceeeehh
Confidence            3455689999999 999999999999999999888853

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.19  E-value=0.2  Score=36.57  Aligned_cols=31  Identities=16%  Similarity=0.104  Sum_probs=27.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +|.|+|++|.+|.+.++.+...|.+|+...+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R   32 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSR   32 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEES
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence            5778877799999999999999999999986

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.17  E-value=0.54  Score=35.82  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHH-HHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIA-RHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la-~~~g~~vi~~~~~  158 (314)
                      -.|++|+|.|. |.+|..+++++ +..|++++++.+.
T Consensus        30 l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            36899999999 99999999876 4679999988864

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.10  E-value=0.56  Score=38.48  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=44.9

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      +++++.+| |...+|..|.+++..|+.+|.+.++++... .++.+++.++.+|++.+.
T Consensus       140 ~~~~g~~V-VeaSSGN~GiAlA~~aa~lGik~~Iv~P~~-~~~~K~~~ira~GAeVi~  195 (382)
T d1wkva1         140 RVEKGSLV-ADATSSNFGVALSAVARLYGYRARVYLPGA-AEEFGKLLPRLLGAQVIV  195 (382)
T ss_dssp             TSCTTCEE-EEECCHHHHHHHHHHHHHTTCEEEEEEETT-SCHHHHHHHHHTTCEEEE
T ss_pred             ccCCCCEE-EEeCCcHHHHHHHHHHHHcCCCEEEEeecc-ccccccccccccCcceee
Confidence            46777664 445569999999999999999998888654 478888899999998665

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.97  E-value=1.4  Score=35.79  Aligned_cols=31  Identities=10%  Similarity=0.276  Sum_probs=24.8

Q ss_pred             CCEEEEcCCCcHHHHHHHH-HHHHcCCcEEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQ-IARHRGIHSINI  155 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~-la~~~g~~vi~~  155 (314)
                      +-+|||+|++|-+|..++. |++..|.+|+++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~   33 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIV   33 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEE
Confidence            3479999999999987775 556678888876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.73  E-value=0.35  Score=32.62  Aligned_cols=41  Identities=17%  Similarity=0.086  Sum_probs=33.4

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +.....-..+++|+|.|+ |.+|.-++..+..+|.++..+.+
T Consensus        21 i~~~~~~~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~   61 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDI   61 (123)
T ss_dssp             HHHHHTCTTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHhhccCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEe
Confidence            344444566789999999 99999999999999999887764

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=90.70  E-value=0.087  Score=37.11  Aligned_cols=91  Identities=16%  Similarity=0.258  Sum_probs=48.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc----CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          127 SIVQNGATSIVGQCIIQIARHR----GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~----g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      +|.|.||+|-+|+-+++++...    ..+.......+  +..+   ...++..........+.+..     .  ..|++|
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~--~~gk---~~~~~~~~~~~~~~~~~~~~-----~--~~DvvF   69 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ--IGVP---APNFGKDAGMLHDAFDIESL-----K--QLDAVI   69 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSC--CSSB---CCCSSSCCCBCEETTCHHHH-----T--TCSEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccc--cccc---ccccCCcceeeecccchhhh-----c--cccEEE
Confidence            5889999999999999865432    23444444221  1100   01111111111111111111     1  499999


Q ss_pred             ecCCCccHHHHHHhcccCC---EEEEEcCC
Q 021311          203 NCVGGNSASKVLKFLSQGG---TMVTYGGM  229 (314)
Q Consensus       203 d~~g~~~~~~~~~~l~~~G---~~v~~g~~  229 (314)
                      -|++..........+...|   .+|..++.
T Consensus        70 ~alp~~~s~~~~~~l~~~g~~~~VIDlSsd   99 (147)
T d1mb4a1          70 TCQGGSYTEKVYPALRQAGWKGYWIDAAST   99 (147)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCSEEEESSST
T ss_pred             EecCchHHHHHhHHHHHcCCceEEEeCCcc
Confidence            9999988866665554444   36666643

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.68  E-value=0.36  Score=37.24  Aligned_cols=35  Identities=11%  Similarity=0.113  Sum_probs=32.0

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      -.|++|+|.|. |.+|..+++.+...|++++++.+.
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence            46899999998 999999999999999999998864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.47  E-value=0.29  Score=32.81  Aligned_cols=34  Identities=12%  Similarity=0.052  Sum_probs=30.3

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ..++++|.|+ |.+|.=+++.++.+|.++.++.+.
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEee
Confidence            3488999999 999999999999999999888854

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.44  E-value=0.12  Score=38.09  Aligned_cols=84  Identities=6%  Similarity=-0.008  Sum_probs=50.3

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCC------cEEEecChhhHHHHHHHhcCCCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGA------DEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~------~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      .+|.|+|+ |.+|.+.+..+...|-+|..+.+    +++..+.+..-+.      ...+...-..-..+.+...   ..|
T Consensus         8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r----~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~---~ad   79 (189)
T d1n1ea2           8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHM----NEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN---GAE   79 (189)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTEEEEEEECS----CHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT---TCS
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEe----cHHHHHHHhhcccccccccccccccccccchhhhhccC---CCC
Confidence            46999999 99999999888887778877774    5566655532221      1111110000011222222   389


Q ss_pred             EEEecCCCccHHHHHHhc
Q 021311          200 LGFNCVGGNSASKVLKFL  217 (314)
Q Consensus       200 ~v~d~~g~~~~~~~~~~l  217 (314)
                      +++-++........++.+
T Consensus        80 ~iiiavPs~~~~~~~~~~   97 (189)
T d1n1ea2          80 IILFVIPTQFLRGFFEKS   97 (189)
T ss_dssp             CEEECSCHHHHHHHHHHH
T ss_pred             EEEEcCcHHHHHHHHHHH
Confidence            999999887665555544

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.23  Score=33.52  Aligned_cols=32  Identities=13%  Similarity=0.101  Sum_probs=29.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++|+|+ |.+|.-+++.+..+|.++..+.+
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEF   54 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEe
Confidence            379999999 99999999999999999988874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.38  E-value=0.056  Score=40.23  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcEE-EecChhhHHHHHHHhcCCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADEV-FTESQLEVKNVKGLLANLP  196 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~~-~~~~~~~~~~i~~~~~~~g  196 (314)
                      +++| +||=+|+ | .|..+..+++ .|++++++- .   ++...+.++    ..+.+.+ +...+     +.+.... +
T Consensus        29 ~~~g-rvLDiGc-G-~G~~~~~la~-~g~~v~gvD-~---s~~~l~~a~~~~~~~~~~~~~~~~~d-----~~~~~~~-~   94 (198)
T d2i6ga1          29 VAPG-RTLDLGC-G-NGRNSLYLAA-NGYDVTAWD-K---NPASMANLERIKAAEGLDNLQTDLVD-----LNTLTFD-G   94 (198)
T ss_dssp             SCSC-EEEEETC-T-TSHHHHHHHH-TTCEEEEEE-S---CHHHHHHHHHHHHHTTCTTEEEEECC-----TTTCCCC-C
T ss_pred             CCCC-cEEEECC-C-CCHHHHHHHH-Hhhhhcccc-C---cHHHHHHHHHHhhhccccchhhhhee-----ccccccc-c
Confidence            4554 8999998 3 6777777776 488877665 2   666665543    3444321 11111     1111111 2


Q ss_pred             CCcEEEecCCCc---------cHHHHHHhcccCCEEEEEcC
Q 021311          197 EPALGFNCVGGN---------SASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       197 ~~d~v~d~~g~~---------~~~~~~~~l~~~G~~v~~g~  228 (314)
                      .||+|+......         .+..+.++|+++|.++....
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          95 EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             CEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            599998644321         22567778999999888653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=90.34  E-value=0.27  Score=39.41  Aligned_cols=99  Identities=15%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCcE--EEecChhhHHHHHHHhcCC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGADE--VFTESQLEVKNVKGLLANL  195 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~--~~~~~~~~~~~i~~~~~~~  195 (314)
                      ..+|++||=.++ |. |..++++|+ .+.+|+ .++.   ++...+.++    ..|.+.  .+..+..  +-++.+....
T Consensus       143 ~~~g~rVLDl~~-gt-G~~s~~~a~-g~~~V~-~vD~---s~~al~~a~~n~~~ngl~~~~~i~~d~~--~~~~~~~~~~  213 (318)
T d1wxxa2         143 RFRGERALDVFS-YA-GGFALHLAL-GFREVV-AVDS---SAEALRRAEENARLNGLGNVRVLEANAF--DLLRRLEKEG  213 (318)
T ss_dssp             GCCEEEEEEETC-TT-THHHHHHHH-HEEEEE-EEES---CHHHHHHHHHHHHHTTCTTEEEEESCHH--HHHHHHHHTT
T ss_pred             HhCCCeeeccCC-CC-cHHHHHHHh-cCCcEE-eecc---hHHHHHHHHHHHHHcCCCCcceeeccHH--HHhhhhHhhh
Confidence            457899987776 22 344455554 234554 4543   667666664    355432  2222222  2223333333


Q ss_pred             CCCcEEEecCC---C--c-----------cHHHHHHhcccCCEEEEEcCC
Q 021311          196 PEPALGFNCVG---G--N-----------SASKVLKFLSQGGTMVTYGGM  229 (314)
Q Consensus       196 g~~d~v~d~~g---~--~-----------~~~~~~~~l~~~G~~v~~g~~  229 (314)
                      ++||+|+-...   .  .           ....+++.|+|||.+++..+.
T Consensus       214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            35999974322   1  1           124677889999999987743

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=90.29  E-value=0.53  Score=33.78  Aligned_cols=100  Identities=13%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCC-------cEEEe-------c------ChhhH
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGA-------DEVFT-------E------SQLEV  185 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~-------~~~~~-------~------~~~~~  185 (314)
                      +|-|.|- |-+|.++.+.+... ..+++.+-+.  .+.+...++.+...       ..-.+       .      ....+
T Consensus         3 kIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~--~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p   79 (171)
T d3cmco1           3 KVGINGF-GRIGRNVFRAALKNPDIEVVAVNDL--TDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHTTCTTEEEEEEECS--SCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCC--CCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCH
Confidence            5789998 99999998777544 4566666654  35566666643221       11111       1      11111


Q ss_pred             HHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCCC
Q 021311          186 KNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSKK  232 (314)
Q Consensus       186 ~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~  232 (314)
                      +++.+.  .. ++|+|+||+|.-.. +.+...|..+.+-|++..+..+
T Consensus        80 ~~i~W~--~~-~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d  124 (171)
T d3cmco1          80 ENLAWG--EI-GVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN  124 (171)
T ss_dssp             GGCCTG--GG-TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS
T ss_pred             HHcccc--cc-CCcEEEEecCccCCHHHHHHHHhCCCceEEEeccccc
Confidence            222111  11 49999999998554 6666778888766777755543

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.18  E-value=1.7  Score=34.29  Aligned_cols=57  Identities=30%  Similarity=0.354  Sum_probs=46.2

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      ..+.++++|+...+ |..|.+++..|+.+|.+.++++... .+..+...++.+|+..+.
T Consensus        56 g~~~~~~~vv~~Ss-GN~g~a~A~~a~~~G~~~~i~~p~~-~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          56 GTLTKGKEIVDATS-GNTGIALAYVAAARGYKITLTMPET-MSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             TSSCTTCEEEESCC-SHHHHHHHHHHHHHTCCEEEEEETT-SCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceeeeecC-CCchHHHHHHHHHhhccccccchhh-hhhhhhhhHHHhCCceEe
Confidence            45677777666655 9999999999999999988888554 478888889999998665

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.16  E-value=1.1  Score=35.38  Aligned_cols=96  Identities=16%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChh--h---------------------
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQL--E---------------------  184 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~---------------------  184 (314)
                      .++...+|..|.+++..|+.+|.+.++++... .++.+.+.++.+|++.+......  .                     
T Consensus        71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~-~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~  149 (318)
T d1v71a1          71 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLD-APEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDH  149 (318)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEETT-CCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCSSSS
T ss_pred             eeeeeccchhhHHHHHhhcccccceeeccccc-ccHHHHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecCCccc
Confidence            46666779999999999999999998888665 47888889999999866532110  0                     


Q ss_pred             ----------HHHHHHHhcCCCCCcEEEecCCCccH----HHHHHhcccCCEEEEEc
Q 021311          185 ----------VKNVKGLLANLPEPALGFNCVGGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       185 ----------~~~i~~~~~~~g~~d~v~d~~g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                                ..++.+..   +.+|.+|-++|+-..    ...++.+.+..+++.+.
T Consensus       150 ~~~~~g~~t~~~Ei~~q~---~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~  203 (318)
T d1v71a1         150 PHVLAGQGTAAKELFEEV---GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVE  203 (318)
T ss_dssp             HHHHHHHTHHHHHHHHHH---CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccchHHHHHHHhc---CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeeccc
Confidence                      01222222   248999999887533    56667788888888764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.11  E-value=0.13  Score=36.30  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .|++|||.|+ |.+|..-+..+...|++++++..
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence            6799999999 99999999999999999988863

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=90.10  E-value=1.3  Score=35.25  Aligned_cols=100  Identities=10%  Similarity=0.025  Sum_probs=54.5

Q ss_pred             hcCCCCCEEEEcCC-CcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH------hCCCc-E-EEecChhhHHHHHH
Q 021311          120 TTLNSGDSIVQNGA-TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK------GLGAD-E-VFTESQLEVKNVKG  190 (314)
Q Consensus       120 ~~~~~~~~vlI~g~-~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~------~lg~~-~-~~~~~~~~~~~i~~  190 (314)
                      ..+.+|++||=..+ +|++++   . |...|+..++.++.   ++...+.++      .++.+ + .+..+-  .+.++.
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl---~-aa~~ga~~V~~vD~---s~~a~~~a~~N~~~n~l~~~~~~~i~~d~--~~~l~~  210 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSV---A-AAMGGAMATTSVDL---AKRSRALSLAHFEANHLDMANHQLVVMDV--FDYFKY  210 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHH---H-HHHTTBSEEEEEES---CTTHHHHHHHHHHHTTCCCTTEEEEESCH--HHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHH---H-HHhCCCceEEEecC---CHHHHHHHHHHHHHhcccCcceEEEEccH--HHHHHH
Confidence            45778999986655 454443   2 23468866666664   444444443      23322 2 222222  123333


Q ss_pred             HhcCCCCCcEEEecCCC----------------ccHHHHHHhcccCCEEEEEcC
Q 021311          191 LLANLPEPALGFNCVGG----------------NSASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       191 ~~~~~g~~d~v~d~~g~----------------~~~~~~~~~l~~~G~~v~~g~  228 (314)
                      ......+||+|+---..                .....++++|+|+|.++...+
T Consensus       211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            33232359999742211                022567789999999998764

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=1.4  Score=30.96  Aligned_cols=86  Identities=13%  Similarity=-0.003  Sum_probs=52.3

Q ss_pred             EEEEcCCCcHHHHH-HHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQC-IIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~-a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|.|.|. |.+|.- .+...+.. +.+++++++.+  .+......+.++... +++    .+.+   ..   .+|+|+.|
T Consensus         3 ri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~--~~~~~~~~~~~~~~~-~~~----~~~l---~~---~~D~V~I~   68 (164)
T d1tlta1           3 RIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPT--RAKALPICESWRIPY-ADS----LSSL---AA---SCDAVFVH   68 (164)
T ss_dssp             EEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSS--CTTHHHHHHHHTCCB-CSS----HHHH---HT---TCSEEEEC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEech--hHhhhhhhhcccccc-ccc----chhh---hh---hccccccc
Confidence            5789998 888863 45555544 77888888763  233344455666542 111    1222   22   39999999


Q ss_pred             CCCccH-HHHHHhcccCCEEEEEc
Q 021311          205 VGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      +....- +.+..+|+.+ +-|++-
T Consensus        69 tp~~~h~~~~~~al~~g-k~V~~E   91 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAG-VHVCVD   91 (164)
T ss_dssp             SCTTHHHHHHHHHHHTT-CEEEEE
T ss_pred             ccchhcccccccccccc-ceeecc
Confidence            887654 5666667665 456564

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=89.94  E-value=1.6  Score=32.86  Aligned_cols=80  Identities=14%  Similarity=0.114  Sum_probs=50.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      -.|.+|+|.|- |.+|..+++++...|++++++..    +..+.+.+ ...|... ++..+.+         .. ..|+.
T Consensus        37 l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~----~~~~~~~~~~~~g~~~-~~~~~~~---------~~-~cDIl  100 (230)
T d1leha1          37 LEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDV----NKAAVSAAVAEEGADA-VAPNAIY---------GV-TCDIF  100 (230)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS----CHHHHHHHHHHHCCEE-CCGGGTT---------TC-CCSEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecc----cHHHHHHHHHhcCCcc-cCCcccc---------cc-cccEe
Confidence            36899999999 99999999999999999987653    44554444 3455432 2211111         11 36777


Q ss_pred             EecCCCccH-HHHHHhcc
Q 021311          202 FNCVGGNSA-SKVLKFLS  218 (314)
Q Consensus       202 ~d~~g~~~~-~~~~~~l~  218 (314)
                      +=|+-.... ....+.++
T Consensus       101 ~PcA~~~~I~~~~~~~l~  118 (230)
T d1leha1         101 APCALGAVLNDFTIPQLK  118 (230)
T ss_dssp             EECSCSCCBSTTHHHHCC
T ss_pred             cccccccccChHHhhccC
Confidence            777665443 34444443

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.78  E-value=0.46  Score=38.23  Aligned_cols=31  Identities=10%  Similarity=0.245  Sum_probs=25.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      .+|||+||+|-+|..++..+...|..+.+++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            6899999999999999988877787654443

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=89.73  E-value=1.6  Score=28.87  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=36.8

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV  177 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~  177 (314)
                      |++|||......+...+..++...|++++.++..   ..+..+.+++...+.+
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~---~~~al~~~~~~~~dli   50 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATN---GREAVEKYKELKPDIV   50 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESS---HHHHHHHHHHHCCSEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECC---HHHHHHHHHhccCCEE
Confidence            6889999887888888888889999998766532   4566666665544443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=89.71  E-value=0.16  Score=39.90  Aligned_cols=32  Identities=13%  Similarity=0.166  Sum_probs=28.1

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +++|+|+|+ |.-|++++..++..|.+|.++-.
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEA   32 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeC
Confidence            588999999 99999999999999998877653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.50  E-value=0.14  Score=37.52  Aligned_cols=32  Identities=13%  Similarity=0.030  Sum_probs=27.4

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCc-EEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIH-SINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~-vi~~~~  157 (314)
                      +++|+|+|| |+.|+.++..++..|.+ |.++-+
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~   36 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEK   36 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEe
Confidence            689999999 99999999999999996 555553

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=89.24  E-value=0.27  Score=35.76  Aligned_cols=36  Identities=17%  Similarity=0.076  Sum_probs=31.3

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ....++|+|+|+ |+.|+.++..+...|.+|...-..
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEecc
Confidence            456799999999 999999999999999988877643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.21  E-value=0.3  Score=32.95  Aligned_cols=35  Identities=14%  Similarity=0.069  Sum_probs=30.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +..++++|.|+ |.+|+=+++.++.+|.+|..+.+.
T Consensus        23 ~~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~   57 (123)
T d1dxla2          23 EIPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFA   57 (123)
T ss_dssp             SCCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             ccCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEc
Confidence            34589999999 999999999999999999887753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=88.97  E-value=0.25  Score=37.90  Aligned_cols=33  Identities=27%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ..++|+|+|| |..|++++..++..|.++.++-+
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er   35 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYER   35 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeC
Confidence            4588999999 99999999999999998887764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.51  Score=36.84  Aligned_cols=76  Identities=13%  Similarity=0.211  Sum_probs=41.3

Q ss_pred             EEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCC
Q 021311          128 IVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVG  206 (314)
Q Consensus       128 vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g  206 (314)
                      |||+||+|-+|..++..+...|..++.+++.-. +..+.............+..+. .+.+.....- ...++++-+++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK-DGTKFVNLVDLNIADYMDKEDF-LIQIMAGEEF-GDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCS-SGGGGHHHHTSCCSEEEEHHHH-HHHHHTTCCC-SSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCC-CcchhhcccccchhhhccchHH-HHHHhhhhcc-cchhhhhhhcc
Confidence            899999999999999888888975444443221 2222333344443333333321 1122211111 23778877664

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.66  E-value=1.4  Score=31.18  Aligned_cols=87  Identities=9%  Similarity=0.005  Sum_probs=50.9

Q ss_pred             EEEEcCCCcHHHHH-HHHHHHHcCCcEEEEecCCCCcHHHH-HHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQC-IIQIARHRGIHSINIIRDRAGSDEAK-EKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~-a~~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|.|+|+ |.+|.- .+...+..+--.+++++.   ++++. ...+.++....++.-+       ++...  .+|+|+-|
T Consensus         3 rvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~-------~ll~~--~iD~V~I~   69 (167)
T d1xeaa1           3 KIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTR---NPKVLGTLATRYRVSATCTDYR-------DVLQY--GVDAVMIH   69 (167)
T ss_dssp             EEEEECC-CHHHHHTHHHHHTTSTTEEEEEECS---CHHHHHHHHHHTTCCCCCSSTT-------GGGGG--CCSEEEEC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEC---CHHHHHHHHHhcccccccccHH-------Hhccc--ccceeccc
Confidence            5789998 888854 455565554333345654   44444 4445677654332211       12222  49999999


Q ss_pred             CCCccH-HHHHHhcccCCEEEEEc
Q 021311          205 VGGNSA-SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       205 ~g~~~~-~~~~~~l~~~G~~v~~g  227 (314)
                      +....- +.+..++..| .-|++.
T Consensus        70 tp~~~H~~~~~~al~~g-k~V~~E   92 (167)
T d1xeaa1          70 AATDVHSTLAAFFLHLG-IPTFVD   92 (167)
T ss_dssp             SCGGGHHHHHHHHHHTT-CCEEEE
T ss_pred             ccccccccccccccccc-cccccC
Confidence            877554 6677777765 445564

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.14  Score=43.07  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=29.7

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRA  160 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~  160 (314)
                      .+|||.|+ |++|..++..+...|...+.++|.+.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            78999999 99999999988899998888887654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.28  E-value=0.58  Score=36.74  Aligned_cols=98  Identities=11%  Similarity=0.094  Sum_probs=56.5

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh----CCCc------EEEecChhhHHH
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG----LGAD------EVFTESQLEVKN  187 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~------~~~~~~~~~~~~  187 (314)
                      ...+.+++++||=.|++  .|..+..+++. |++++++- .   +++.++.+++    .+..      .+.+.+-...+ 
T Consensus        50 ~~l~~~~~~~vLD~GcG--~G~~~~~la~~-g~~v~gvD-~---S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-  121 (292)
T d1xvaa_          50 GLLRQHGCHRVLDVACG--TGVDSIMLVEE-GFSVTSVD-A---SDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD-  121 (292)
T ss_dssp             HHHHHTTCCEEEESSCT--TSHHHHHHHHT-TCEEEEEE-S---CHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH-
T ss_pred             HHhhhcCCCEEEEecCC--CcHHHHHHHHc-CCeeeecc-C---chHHHHHHHHHHHhcccccccceeeeeeccccccc-
Confidence            33445678899999983  47777778775 88877655 3   6766666542    2211      11111111111 


Q ss_pred             HHHHhcCCCCCcEEEecCCC------c---------cHHHHHHhcccCCEEEE
Q 021311          188 VKGLLANLPEPALGFNCVGG------N---------SASKVLKFLSQGGTMVT  225 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g~------~---------~~~~~~~~l~~~G~~v~  225 (314)
                       ....... ++|.|+.....      .         .+..+.+.|+|||.+++
T Consensus       122 -~~~~~~~-~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         122 -KDVPAGD-GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             -HHSCCTT-CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             -cccCCCC-CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence             1111122 49988854321      0         24778899999999886

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.34  Score=32.77  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ++++|.|+ |.+|.-+++.++.+|.++..+.+.
T Consensus        23 k~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~   54 (125)
T d3grsa2          23 GRSVIVGA-GYIAVEMAGILSALGSKTSLMIRH   54 (125)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEcC-CccHHHHHHHHhcCCcEEEEEeec
Confidence            79999999 999999999999999999888853

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.23  E-value=0.64  Score=31.15  Aligned_cols=37  Identities=19%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++++++|.|+ |.+|.-++..++..|.++..+.+.
T Consensus        26 ~~~~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~   62 (121)
T d1d7ya2          26 GLRPQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQ   62 (121)
T ss_dssp             HCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hhhcCCeEEEECc-chhHHHHHHHhhcccceEEEEeec
Confidence            3677899999999 999999999999999999888753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.20  E-value=1.3  Score=31.16  Aligned_cols=45  Identities=18%  Similarity=0.068  Sum_probs=34.4

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCc
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD  175 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~  175 (314)
                      ++|-++|. |.+|...+.-+...|.++.+.-+    +.++.+.+...+..
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~----~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLKAGYLLNVFDL----VQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECS----SHHHHHHHHHTTCE
T ss_pred             CEEEEEEE-HHHHHHHHHHHHHCCCeEEEEEC----chhhhhhhhhhhcc
Confidence            46888998 99999888777778998877653    66777777766654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.06  E-value=0.5  Score=31.39  Aligned_cols=34  Identities=15%  Similarity=0.074  Sum_probs=30.0

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ..++++|.|+ |.+|.-+++.+..+|.++..+.+.
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~   54 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGA   54 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCeEEEECC-CccceeeeeeecccccEEEEEEec
Confidence            3489999999 999999999999999999888753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.00  E-value=2  Score=28.72  Aligned_cols=92  Identities=11%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      ++++|+|. |.+|+.+++.++  +..++++. .   ++++.+.+...|... +..+....+.+++..-.  .++.++-+.
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~-~---d~~~~~~~~~~~~~~-i~Gd~~~~~~L~~a~i~--~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GSEVFVLA-E---DENVRKKVLRSGANF-VHGDPTRVSDLEKANVR--GARAVIVNL   70 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GGGEEEEE-S---CTTHHHHHHHTTCEE-EESCTTSHHHHHHTTCT--TCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CCCCEEEE-c---chHHHHHHHhcCccc-cccccCCHHHHHHhhhh--cCcEEEEec
Confidence            46899998 889988877664  33554444 3   556666777777644 43444344445553333  488998888


Q ss_pred             CCccH----HHHHHhcccCCEEEEEc
Q 021311          206 GGNSA----SKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       206 g~~~~----~~~~~~l~~~G~~v~~g  227 (314)
                      ..+..    ....+.+.|..+++...
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEE
Confidence            77543    45556777887777664

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.89  E-value=1.5  Score=34.37  Aligned_cols=49  Identities=29%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             EEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          129 VQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       129 lI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      ++...+|..|.+++..|+.+|.+.++++... .++.+.+.++.+|++.+.
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~-~~~~k~~~~~~~GA~V~~  106 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPET-MSVERRKVLKMLGAELVL  106 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETT-SCHHHHHHHHHTTCEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeecccc-ccHHHeeccccCCcEEEE
Confidence            5666669999999999999999988887654 377888899999997654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=0.091  Score=39.77  Aligned_cols=95  Identities=9%  Similarity=-0.019  Sum_probs=56.9

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC----CCcE--EEecChhhHHHHHHHhcC
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL----GADE--VFTESQLEVKNVKGLLAN  194 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~~--~~~~~~~~~~~i~~~~~~  194 (314)
                      ...++++||=+|+  +.|..+..+++..+.+++++ +.   ++...+.+++.    +...  .+..+      +.++...
T Consensus        57 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~v-D~---s~~~l~~ak~~~~~~~~~~~~f~~~d------~~~~~~~  124 (222)
T d2ex4a1          57 NKTGTSCALDCGA--GIGRITKRLLLPLFREVDMV-DI---TEDFLVQAKTYLGEEGKRVRNYFCCG------LQDFTPE  124 (222)
T ss_dssp             -CCCCSEEEEETC--TTTHHHHHTTTTTCSEEEEE-ES---CHHHHHHHHHHTGGGGGGEEEEEECC------GGGCCCC
T ss_pred             CCCCCCEEEEecc--CCCHhhHHHHHhcCCEEEEe-ec---CHHHhhcccccccccccccccccccc------ccccccc
Confidence            3567789999998  34777777766655556555 43   67777777542    2211  11111      2222222


Q ss_pred             CCCCcEEEecCCC-----c----cHHHHHHhcccCCEEEEEc
Q 021311          195 LPEPALGFNCVGG-----N----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       195 ~g~~d~v~d~~g~-----~----~~~~~~~~l~~~G~~v~~g  227 (314)
                      .+.+|+|+....-     +    .+..+.+.|+++|.++...
T Consensus       125 ~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         125 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            2359999875443     1    2366778999999998865

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.43  E-value=1.3  Score=27.77  Aligned_cols=69  Identities=16%  Similarity=0.064  Sum_probs=45.3

Q ss_pred             CEEEEcCCCcHHHHHH-HHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          126 DSIVQNGATSIVGQCI-IQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a-~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      -+|-++|- |+.|..+ +++++..|+.|...-..   .....+.++++|.......+...   +      . ++|+|+-+
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~---~~~~t~~L~~~Gi~i~~gh~~~~---i------~-~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIE---ETERTAYLRKLGIPIFVPHSADN---W------Y-DPDLVIKT   67 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSS---CCHHHHHHHHTTCCEESSCCTTS---C------C-CCSEEEEC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCC---CChhHHHHHHCCCeEEeeecccc---c------C-CCCEEEEe
Confidence            35777788 7788755 68889999998877543   44556678889986544333222   1      1 38888766


Q ss_pred             CCCc
Q 021311          205 VGGN  208 (314)
Q Consensus       205 ~g~~  208 (314)
                      .+-+
T Consensus        68 sAI~   71 (89)
T d1j6ua1          68 PAVR   71 (89)
T ss_dssp             TTCC
T ss_pred             cCcC
Confidence            6543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=87.22  E-value=1  Score=34.44  Aligned_cols=99  Identities=10%  Similarity=-0.084  Sum_probs=59.7

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHh-CCCcEEEecChhhHHHHHHHhcCCCCC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEVFTESQLEVKNVKGLLANLPEP  198 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~~~~i~~~~~~~g~~  198 (314)
                      ....++.+||=+|+  +.|..+..++.....++.++ +.   ++...+.+++ +.....++....+   +.++....+.+
T Consensus        89 l~~~~~~~vLD~Gc--G~G~~t~~ll~~~~~~v~~v-D~---s~~~l~~a~~~~~~~~~~~~~~~d---~~~~~~~~~~f  159 (254)
T d1xtpa_          89 LPGHGTSRALDCGA--GIGRITKNLLTKLYATTDLL-EP---VKHMLEEAKRELAGMPVGKFILAS---METATLPPNTY  159 (254)
T ss_dssp             STTCCCSEEEEETC--TTTHHHHHTHHHHCSEEEEE-ES---CHHHHHHHHHHTTTSSEEEEEESC---GGGCCCCSSCE
T ss_pred             CCCCCCCeEEEecc--cCChhhHHHHhhcCceEEEE-cC---CHHHHHhhhccccccccceeEEcc---ccccccCCCcc
Confidence            44567789999998  44788888887655555555 43   7777777764 3222222221111   22222222359


Q ss_pred             cEEEecCCCc---------cHHHHHHhcccCCEEEEEc
Q 021311          199 ALGFNCVGGN---------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       199 d~v~d~~g~~---------~~~~~~~~l~~~G~~v~~g  227 (314)
                      |+|+..-.-.         .+..+.+.|+++|.+++.-
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            9998765432         1367778899999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.14  E-value=0.39  Score=36.33  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ...+++|+|+|+ |+.|+.++..++..|.++.++...
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeec
Confidence            356799999999 999999999999999988877643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.96  E-value=0.49  Score=31.83  Aligned_cols=32  Identities=19%  Similarity=0.155  Sum_probs=28.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++++|.|+ |.+|.-+++.++.+|.+|..+.+
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~   51 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVR   51 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEe
Confidence            368999999 99999999999999999988874

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.94  E-value=1.1  Score=35.15  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=55.4

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC---------Cc-EEEecChhhHHHHHHHh
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG---------AD-EVFTESQLEVKNVKGLL  192 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg---------~~-~~~~~~~~~~~~i~~~~  192 (314)
                      ..-++|||.|+++  |..+-.+++..+...+.+++-   +++-.+.+++.-         .. .++..+.  .+-+++..
T Consensus        79 ~~pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEi---D~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da--~~~l~~~~  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGD--GGVLREVARHASIEQIDMCEI---DKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG--VAFLKNAA  151 (290)
T ss_dssp             SCCCEEEEETCSS--SHHHHHHTTCTTCCEEEEEES---CHHHHHHHHHHCHHHHGGGGSTTEEEEESCH--HHHHHTSC
T ss_pred             CCCcceEEecCCc--hHHHHHHHhcccceeeEEecC---CHHHHHHHHHhchhhhccccCCCcEEEEccH--HHHHhhcc
Confidence            3447999999833  555556777777777777764   566666665421         11 1221111  12233322


Q ss_pred             cCCCCCcEEEecCCCc-----------cHHHHHHhcccCCEEEEEc
Q 021311          193 ANLPEPALGFNCVGGN-----------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       193 ~~~g~~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~g  227 (314)
                      .+  ++|+|+--...+           -++.+.++|+++|.++.-.
T Consensus       152 ~~--~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         152 EG--SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TT--CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cc--CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            22  599886433221           1367888999999999765

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.85  E-value=2.4  Score=30.31  Aligned_cols=94  Identities=12%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHH-HhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKL-KGLGADEVFTESQLEVKNVKGLLANLPEPALGFNC  204 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~  204 (314)
                      +|.|.||+|-+|+-+++++..+- .++..+...+ ...++.... ..+-....+...  +.+.+.+      ..|++|-|
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~-~aG~~i~~~~p~~~~~~~~~~~--~~~~~~~------~~dvvf~a   73 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRT-YAGKKLEEIFPSTLENSILSEF--DPEKVSK------NCDVLFTA   73 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECST-TTTSBHHHHCGGGCCCCBCBCC--CHHHHHH------HCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccc-cCCCcccccCchhhcccccccc--CHhHhcc------ccceEEEc
Confidence            58899999999999998887653 4554444221 122222222 122111111111  1122211      39999999


Q ss_pred             CCCccHHHHHHhcccCCEEEEEcCCC
Q 021311          205 VGGNSASKVLKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       205 ~g~~~~~~~~~~l~~~G~~v~~g~~~  230 (314)
                      .+........... .+-++|..++..
T Consensus        74 ~p~~~s~~~~~~~-~~~~VIDlSadf   98 (176)
T d1vkna1          74 LPAGASYDLVREL-KGVKIIDLGADF   98 (176)
T ss_dssp             CSTTHHHHHHTTC-CSCEEEESSSTT
T ss_pred             cccHHHHHHHHhh-ccceEEecCccc
Confidence            9988775555543 567887776433

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.52  E-value=0.22  Score=35.27  Aligned_cols=95  Identities=15%  Similarity=0.236  Sum_probs=53.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCC--cEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGI--HSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      |-+|.|.||+|-+|.-+++++..+..  ..+....    +.+      ..|................+...  ...|++|
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~----s~~------s~G~~~~~~~~~~~~~~~~~~~~--~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA----SAR------SAGKSLKFKDQDITIEETTETAF--EGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE----CGG------GTTCEEEETTEEEEEEECCTTTT--TTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec----ccc------cccccccccCCcccccccchhhh--hhhhhhh
Confidence            44799999999999999999987753  2222221    111      12211111000000000000001  1489999


Q ss_pred             ecCCCccH-HHHHHhcccCCEEEEEcCCCC
Q 021311          203 NCVGGNSA-SKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       203 d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      -+.+.... ....+....+.+++..+....
T Consensus        69 ~~~~~~~s~~~~~~~~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          69 FSAGSSTSAKYAPYAVKAGVVVVDNTSYFR   98 (154)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSSTTT
T ss_pred             hccCccchhhHHhhhccccceehhcChhhh
Confidence            99988766 455567788889999886543

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.48  E-value=2.4  Score=31.31  Aligned_cols=113  Identities=11%  Similarity=0.040  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEcCCCc---HHHHHHHHHHHHcCCcEEEEecCCCCcHHH---HHHHHhCCCcEEEecCh
Q 021311          109 PLTALRMLEDFTTLNSGDSIVQNGATS---IVGQCIIQIARHRGIHSINIIRDRAGSDEA---KEKLKGLGADEVFTESQ  182 (314)
Q Consensus       109 ~~ta~~~l~~~~~~~~~~~vlI~g~~g---~~G~~a~~la~~~g~~vi~~~~~~~~~~~~---~~~~~~lg~~~~~~~~~  182 (314)
                      ...+++.+.+...-...++|+|.-+.|   +=|+++++.++..|.+|.++...+..+++.   .+...+++...+-....
T Consensus        24 g~~~a~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (211)
T d2ax3a2          24 GISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQFEP  103 (211)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEESCCCG
T ss_pred             HHHHHHHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHcCCcccccccc
Confidence            344555554444333456676664434   445777777778899887766444333332   23334565543322221


Q ss_pred             hhHHHHHHHhcCCCCCcEEEecCCC--------ccHHHHHHhcccCC-EEEEEcCCCC
Q 021311          183 LEVKNVKGLLANLPEPALGFNCVGG--------NSASKVLKFLSQGG-TMVTYGGMSK  231 (314)
Q Consensus       183 ~~~~~i~~~~~~~g~~d~v~d~~g~--------~~~~~~~~~l~~~G-~~v~~g~~~~  231 (314)
                      ..       ..   .+|+++|+.=+        ..+...++.+.... .++.+-.+++
T Consensus       104 ~~-------~~---~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSG  151 (211)
T d2ax3a2         104 SI-------LN---EFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSG  151 (211)
T ss_dssp             GG-------GG---GCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTT
T ss_pred             cc-------cc---CceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCcc
Confidence            11       11   38999998832        12356666665554 4555544443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.43  E-value=3.4  Score=28.45  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=27.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGI-HSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~~  158 (314)
                      ..+.+|.|+|+ |.+|..++..+...+. ..++..+.
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di   39 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDA   39 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEee
Confidence            35678999998 9999998887777664 67778864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=86.41  E-value=0.46  Score=36.07  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ...++|+|+|+ |..|++++..+...|.+|.++.+
T Consensus         4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier   37 (268)
T d1c0pa1           4 HSQKRVVVLGS-GVIGLSSALILARKGYSVHILAR   37 (268)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeC
Confidence            45578999999 99999999999999998877764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=86.14  E-value=0.4  Score=38.03  Aligned_cols=34  Identities=15%  Similarity=0.165  Sum_probs=29.0

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      ....++|+|+|+ |..|+.++..++..|.+|.++-
T Consensus        27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE   60 (370)
T d2iida1          27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLE   60 (370)
T ss_dssp             CSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEe
Confidence            455679999999 9999999988888898877665

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=0.81  Score=33.46  Aligned_cols=31  Identities=19%  Similarity=0.316  Sum_probs=27.6

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ++|.|+|+ |.+|...++++...|.+|+.+..
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~   35 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQ   35 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEEC
Confidence            68999999 99999999999999999887764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.86  E-value=1  Score=30.61  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=32.4

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      ..++++++++|.|+ |.+|.-++..++..|.++..+.+.
T Consensus        30 ~~~~~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~   67 (133)
T d1q1ra2          30 RQLIADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTA   67 (133)
T ss_dssp             HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             HhhccCCEEEEECC-chHHHHHHHHHHhhCcceeeeeec
Confidence            34567899999999 999999999999999998877753

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=85.66  E-value=0.66  Score=36.80  Aligned_cols=26  Identities=8%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcE
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHS  152 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~v  152 (314)
                      +|||+|++|-+|..++..+...|..+
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v   27 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPD   27 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCc
Confidence            69999999999999998887776543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.51  E-value=0.58  Score=31.05  Aligned_cols=33  Identities=12%  Similarity=0.057  Sum_probs=28.7

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++++|.|+ |.+|.-+++.++.+|.++..+.+.
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~   53 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMF   53 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeec
Confidence            378999999 999999999999999988777643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.50  E-value=0.41  Score=35.87  Aligned_cols=99  Identities=12%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHc--CCcEEEEecCCCCcHHHHHHH----HhCCCcE---EEecChh-hHHHHH
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHR--GIHSINIIRDRAGSDEAKEKL----KGLGADE---VFTESQL-EVKNVK  189 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~--g~~vi~~~~~~~~~~~~~~~~----~~lg~~~---~~~~~~~-~~~~i~  189 (314)
                      .+....++||-+|.  ..|..++.+|+.+  +.+++++-.    .++..+.+    +..|...   ++..+.. ..+++.
T Consensus        52 v~~~kpk~ILEiGt--~~G~Sti~la~al~~~g~v~sid~----~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~  125 (214)
T d2cl5a1          52 IREYSPSLVLELGA--YCGYSAVRMARLLQPGARLLTMEM----NPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLK  125 (214)
T ss_dssp             HHHHCCSEEEEECC--TTSHHHHHHHTTCCTTCEEEEEES----CHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHH
T ss_pred             HHhhCCCEEEEEcc--CchhHHHHHHHhCCCccEEEEEec----cHHHHHHHHHHHHHcCCCccceeeeccccccccchh
Confidence            33445579999986  4577788888875  456665552    44444444    3444321   2222221 112333


Q ss_pred             HHhcCCCCCcEEEecCCCccH------HHHHHhcccCCEEEE
Q 021311          190 GLLANLPEPALGFNCVGGNSA------SKVLKFLSQGGTMVT  225 (314)
Q Consensus       190 ~~~~~~g~~d~v~d~~g~~~~------~~~~~~l~~~G~~v~  225 (314)
                      +.... +.+|++|--...+..      ...++.|+|||.+|.
T Consensus       126 ~~~~~-~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         126 KKYDV-DTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHSCC-CCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hcccc-cccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            22222 249988765443322      344567899997664

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=85.41  E-value=0.35  Score=37.17  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=53.6

Q ss_pred             cCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc-EE-EecChhhHHHHHHH-hc
Q 021311          121 TLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD-EV-FTESQLEVKNVKGL-LA  193 (314)
Q Consensus       121 ~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~-~~-~~~~~~~~~~i~~~-~~  193 (314)
                      -++++++||=.|++.  |..+..+++.-..+++++- .   +++..+.++    ..+.. .+ +-..+     +... ..
T Consensus        21 ~~~~~~~VLDlGCG~--G~~~~~~~~~~~~~v~GiD-~---S~~~l~~A~~r~~~~~~~~~v~f~~~D-----~~~~~~~   89 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGK--GGDLLKYERAGIGEYYGVD-I---AEVSINDARVRARNMKRRFKVFFRAQD-----SYGRHMD   89 (252)
T ss_dssp             HCCTTCEEEEETCTT--TTTHHHHHHHTCSEEEEEE-S---CHHHHHHHHHHHHTSCCSSEEEEEESC-----TTTSCCC
T ss_pred             hCCCcCEEEEecccC--cHHHHHHHHcCCCeEEEec-C---CHHHHHHHHHHHHhcCCCcceEEEEcc-----hhhhccc
Confidence            368999999999833  5556667665334565555 3   677666664    33332 11 11111     1000 11


Q ss_pred             CCCCCcEEEecCCCcc-----------HHHHHHhcccCCEEEEE
Q 021311          194 NLPEPALGFNCVGGNS-----------ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       194 ~~g~~d~v~d~~g~~~-----------~~~~~~~l~~~G~~v~~  226 (314)
                      ..+.+|+|+-......           +..+.+.|+|||.++..
T Consensus        90 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          90 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            1124999986554321           24566889999998864

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=85.16  E-value=0.29  Score=34.36  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=44.8

Q ss_pred             EcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecCCCcc
Q 021311          130 QNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS  209 (314)
Q Consensus       130 I~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~g~~~  209 (314)
                      ++|+ |.+|.+.+..++. +..+..+..   ++.++.+.+.+.+.....+..+.        ..   ..|+||-|+..+.
T Consensus         4 fIG~-G~mg~~l~~~L~~-~~~~~~v~~---R~~~~~~~l~~~~~~~~~~~~~~--------~~---~~DiVil~v~d~~   67 (153)
T d2i76a2           4 FVGT-GTLTRFFLECLKD-RYEIGYILS---RSIDRARNLAEVYGGKAATLEKH--------PE---LNGVVFVIVPDRY   67 (153)
T ss_dssp             EESC-CHHHHHHHHTTC-----CCCEEC---SSHHHHHHHHHHTCCCCCSSCCC--------CC------CEEECSCTTT
T ss_pred             EEeC-cHHHHHHHHHHHh-CCCEEEEEe---CChhhhcchhhcccccccchhhh--------hc---cCcEEEEeccchh
Confidence            5688 9999988776544 444432332   25666655554443322222211        11   3899999999888


Q ss_pred             HHHHHHhcccCCEE-EEEc
Q 021311          210 ASKVLKFLSQGGTM-VTYG  227 (314)
Q Consensus       210 ~~~~~~~l~~~G~~-v~~g  227 (314)
                      ....++.++..+++ +.+.
T Consensus        68 i~~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          68 IKTVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             HHHHHTTTCCSSCCEEECC
T ss_pred             hhHHHhhhcccceeeeecc
Confidence            88888888654544 4443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.58  Score=36.92  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      ++|||+|++|-+|..++..+...|..++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~   33 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLR   33 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEec
Confidence            5899999999999999998888888877554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.85  E-value=0.32  Score=33.94  Aligned_cols=92  Identities=20%  Similarity=0.228  Sum_probs=51.1

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHc---CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEE
Q 021311          126 DSIVQNGATSIVGQCIIQIARHR---GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGF  202 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~---g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~  202 (314)
                      -+|.|.||+|-+|+-.++++..+   ..+...+...+  +         .|...-....+.....+......  +.|++|
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~--~---------~Gk~i~~~~~~~~~~~~~~~~~~--~~d~vf   69 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE--S---------AGQRMGFAESSLRVGDVDSFDFS--SVGLAF   69 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT--T---------TTCEEEETTEEEECEEGGGCCGG--GCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc--c---------CCcceeeccccchhccchhhhhc--cceEEE
Confidence            46899999999999999999644   34554444221  1         12111110000000001110111  499999


Q ss_pred             ecCCCccHHHH-HHhcccCCEEEEEcCCC
Q 021311          203 NCVGGNSASKV-LKFLSQGGTMVTYGGMS  230 (314)
Q Consensus       203 d~~g~~~~~~~-~~~l~~~G~~v~~g~~~  230 (314)
                      -|.+....... -.....+.+++..++..
T Consensus        70 ~a~p~~~s~~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEETTCTT
T ss_pred             ecCCcchhhhhccccccCCceEEeechhh
Confidence            99988776444 45566677777776443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=84.79  E-value=1.8  Score=29.77  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=25.8

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCC-cEEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGI-HSINIIR  157 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~-~vi~~~~  157 (314)
                      .+|.|+|++|.+|..++..+...+. ..+...+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            4688999779999999888887765 6677775

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.74  E-value=5.4  Score=30.87  Aligned_cols=57  Identities=26%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      ..++++.+|+... +|..|.+++..|+.+|.+.++++... .++.+...++.+|++.+.
T Consensus        56 g~~~~~~~vv~as-sGn~g~a~A~~a~~~g~~~~i~~p~~-~~~~k~~~~~~~ga~v~~  112 (302)
T d1fcja_          56 GVLKPGVELVEPT-NGNTGIALAYVAAARGYKLTLTMPET-MSIERRKLLKALGANLVL  112 (302)
T ss_dssp             TCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETT-SCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceEEEec-cccchhHHHHHHHHhccCCceEEeec-CcHHHHHHHHHhccceEE
Confidence            5667777665555 49999999999999999998888554 477888888889887553

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=84.48  E-value=0.96  Score=34.55  Aligned_cols=100  Identities=15%  Similarity=0.106  Sum_probs=55.6

Q ss_pred             HhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCc--EEEecChhhHHHHHHHhcC
Q 021311          118 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGAD--EVFTESQLEVKNVKGLLAN  194 (314)
Q Consensus       118 ~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~--~~~~~~~~~~~~i~~~~~~  194 (314)
                      ....+.+.++||=+|+  +.|..+..+++... .++++ .+.+..-+...+.+...+..  ..+...+.     .+....
T Consensus        74 ~~~d~~~~~~VLDvGc--G~G~~~~~la~~~p~~~~~~-~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~-----~~~~~~  145 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGG--GKGGFAAAIARRAPHVSATV-LEMAGTVDTARSYLKDEGLSDRVDVVEGDF-----FEPLPR  145 (253)
T ss_dssp             HHSCCTTCSEEEEETC--TTSHHHHHHHHHCTTCEEEE-EECTTHHHHHHHHHHHTTCTTTEEEEECCT-----TSCCSS
T ss_pred             hhcCCccCCEEEEeCC--CCCHHHHHHHHhcceeEEEE-ccCHHHHHHHHHHHHHhhcccchhhccccc-----hhhccc
Confidence            3355678899999987  45788888888774 45544 43221122223333333322  11111111     011111


Q ss_pred             CCCCcEEEecCCC-----c----cHHHHHHhcccCCEEEEEc
Q 021311          195 LPEPALGFNCVGG-----N----SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       195 ~g~~d~v~d~~g~-----~----~~~~~~~~l~~~G~~v~~g  227 (314)
                        ++|+|+-..--     +    .+.++.+.|+|+|++++.-
T Consensus       146 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         146 --KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             --CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --chhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence              49999855432     1    1367788999999999865

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.37  E-value=1.6  Score=31.65  Aligned_cols=97  Identities=12%  Similarity=-0.008  Sum_probs=55.4

Q ss_pred             HHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCC--Cc--EEEecChhhHHH
Q 021311          116 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLG--AD--EVFTESQLEVKN  187 (314)
Q Consensus       116 l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg--~~--~~~~~~~~~~~~  187 (314)
                      +.+.....++++||=.|+  +.|..++.+++ .+.+++++- .   ++...+.++    ..+  ..  .++..+..    
T Consensus        44 Li~~l~~~~~~~VLDiGc--G~G~~~~~la~-~~~~v~~iD-~---s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~----  112 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGC--GYGVIGIALAD-EVKSTTMAD-I---NRRAIKLAKENIKLNNLDNYDIRVVHSDLY----  112 (194)
T ss_dssp             HHHHCCCCTTCEEEEETC--TTSHHHHHHGG-GSSEEEEEE-S---CHHHHHHHHHHHHHTTCTTSCEEEEECSTT----
T ss_pred             HHHhCCcCCCCeEEEEee--cCChhHHHHHh-hccccceee-e---ccccchhHHHHHHHhCCccceEEEEEcchh----
Confidence            444567889999999988  33566666665 455665544 3   566666554    222  21  22222211    


Q ss_pred             HHHHhcCCCCCcEEEecCC----Cc----cHHHHHHhcccCCEEEEE
Q 021311          188 VKGLLANLPEPALGFNCVG----GN----SASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       188 i~~~~~~~g~~d~v~d~~g----~~----~~~~~~~~l~~~G~~v~~  226 (314)
                        +...+. .+|+|+-...    .+    .+..+.+.|+++|+++..
T Consensus       113 --~~~~~~-~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         113 --ENVKDR-KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             --TTCTTS-CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --hhhccC-CceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence              111122 4999986432    11    136677889999998654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.24  E-value=0.75  Score=30.99  Aligned_cols=35  Identities=11%  Similarity=0.042  Sum_probs=30.6

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      +..++++|.|+ |.+|.=+++.++.+|.++.++.+.
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~   58 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMM   58 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEee
Confidence            44589999999 999999999999999999888753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.05  E-value=2.7  Score=28.97  Aligned_cols=30  Identities=20%  Similarity=0.271  Sum_probs=24.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      +|-|+|. |.+|.+.+.-++..|.+++...+
T Consensus         2 kIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~   31 (152)
T d1i36a2           2 RVGFIGF-GEVAQTLASRLRSRGVEVVTSLE   31 (152)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCEEEECCT
T ss_pred             EEEEEcH-HHHHHHHHHHHHHCCCeEEEEcC
Confidence            5778898 99999999888888988766554

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=83.92  E-value=2.4  Score=33.83  Aligned_cols=66  Identities=12%  Similarity=0.016  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          111 TALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       111 ta~~~l~~~~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      .|++.+.+ +.-+..+.++. ..+|.-|.+++.+|+..|.+.++++.....+.++...++.+|++.+.
T Consensus        64 ~a~~~i~~-a~~~g~~~iv~-~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~  129 (351)
T d1v7ca_          64 GMTLAVSK-AVEGGAQAVAC-ASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQ  129 (351)
T ss_dssp             HHHHHHHH-HHHTTCSEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHH-HHhcCCCeeee-eccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEe
Confidence            34444433 33334455555 44599999999999999998877776554456676778889997654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=83.59  E-value=3.5  Score=29.08  Aligned_cols=82  Identities=15%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecCCCCcHHHHHHHHhCCCcEEEecChhhHHHHHHHhcCCCCCcEEEecC
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCV  205 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~~d~v~d~~  205 (314)
                      +|.|+|. |.+|...+..++.. +++.+++++.+...         ........+.+.     .....   .+|+|+.|+
T Consensus         5 rvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~~~~~-----~~~~~---~~D~Vvi~t   66 (170)
T d1f06a1           5 RVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFDVADV-----DKHAD---DVDVLFLCM   66 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEEGGGG-----GGTTT---TCSEEEECS
T ss_pred             eEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------ccccccccchhh-----hhhcc---ccceEEEeC
Confidence            5889998 99998888777654 66788777653211         111122222221     11111   499999999


Q ss_pred             CCcc-HHHHHHhcccCCEEEEE
Q 021311          206 GGNS-ASKVLKFLSQGGTMVTY  226 (314)
Q Consensus       206 g~~~-~~~~~~~l~~~G~~v~~  226 (314)
                      +... .+.+.++|..|-.+|..
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDT   88 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECC
T ss_pred             CCcccHHHHHHHHHCCCcEEEe
Confidence            8865 58888999998887753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.46  E-value=0.55  Score=33.69  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=26.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      -|+|+|+ |+.|+.++..|.+.|.++.++.+
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCCeEEEEEE
Confidence            3789999 99999999999999999887763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.31  E-value=0.64  Score=36.98  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .++|+|+|| |..|+.++..+...|.+|.++-.
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk   33 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQ   33 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEEC
Confidence            578999999 99999999998888988876664

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.22  E-value=0.62  Score=35.99  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=55.7

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHH----hCCCc---EEEecChhhHHHHHHHh
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK----GLGAD---EVFTESQLEVKNVKGLL  192 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~---~~~~~~~~~~~~i~~~~  192 (314)
                      ..+++|++||-.++  ++|..++.+|+.-+++++++- .   ++...+.++    ..+..   .++..+..      +..
T Consensus       103 ~~~~~g~~VlD~~a--G~G~~~l~~a~~~~~~V~avd-~---n~~a~~~~~~N~~~n~l~~~v~~~~~D~~------~~~  170 (260)
T d2frna1         103 KVAKPDELVVDMFA--GIGHLSLPIAVYGKAKVIAIE-K---DPYTFKFLVENIHLNKVEDRMSAYNMDNR------DFP  170 (260)
T ss_dssp             HHCCTTCEEEETTC--TTTTTHHHHHHHTCCEEEEEC-C---CHHHHHHHHHHHHHTTCTTTEEEECSCTT------TCC
T ss_pred             hhcCCccEEEECcc--eEcHHHHHHHHhCCcEEEEec-C---CHHHHHHHHHHHHHhCCCceEEEEEcchH------Hhc
Confidence            34789999999987  446667777776445655554 3   666666653    23332   23333321      112


Q ss_pred             cCCCCCcEEEec-CCC--ccHHHHHHhcccCCEEEEEc
Q 021311          193 ANLPEPALGFNC-VGG--NSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       193 ~~~g~~d~v~d~-~g~--~~~~~~~~~l~~~G~~v~~g  227 (314)
                      .. +.+|.|+-. ...  ..+..+++.+++||.+....
T Consensus       171 ~~-~~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         171 GE-NIADRILMGYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             CC-SCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cC-CCCCEEEECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            22 248866532 222  33478999999999875543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=83.17  E-value=1.2  Score=34.67  Aligned_cols=96  Identities=15%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhC-----CC----c-EEEecChhhHHHHHHH
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL-----GA----D-EVFTESQLEVKNVKGL  191 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-----g~----~-~~~~~~~~~~~~i~~~  191 (314)
                      ....++|||+|+++  |..+..+++..+...+.+++-   +++-.+.++..     ++    . .++..+.  .+-+++ 
T Consensus        73 ~~~p~~vLiiGgG~--G~~~~~~l~~~~~~~i~~VEI---D~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~--~~~l~~-  144 (274)
T d1iy9a_          73 HPNPEHVLVVGGGD--GGVIREILKHPSVKKATLVDI---DGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG--FMHIAK-  144 (274)
T ss_dssp             SSSCCEEEEESCTT--CHHHHHHTTCTTCSEEEEEES---CHHHHHHHHHHCHHHHTTTTSTTEEEEESCS--HHHHHT-
T ss_pred             cCCcceEEecCCCC--cHHHHHHHhcCCcceEEEecC---CHHHHHHHHHhChhhcccccCCCeEEEechH--HHHHhh-
Confidence            34558999999733  555666777777777777764   55555555432     11    1 1221111  112322 


Q ss_pred             hcCCCCCcEEEecCCCc-----------cHHHHHHhcccCCEEEEEc
Q 021311          192 LANLPEPALGFNCVGGN-----------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~g  227 (314)
                      +..  ++|+|+--...+           -++.+.++|+++|.++.-.
T Consensus       145 ~~~--~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         145 SEN--QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             CCS--CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCC--CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            222  599996433221           1377888999999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.95  E-value=0.74  Score=36.48  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=28.4

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      ++..+|+|+|+ |.-|+.++..++..|.+|.++-
T Consensus         3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlE   35 (449)
T d2dw4a2           3 KKTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLE   35 (449)
T ss_dssp             SCCCEEEEECC-BHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEe
Confidence            45577999999 9999999999999999877665

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=2.4  Score=33.38  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCCCcEEE
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVF  178 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~~~  178 (314)
                      |..-+|...+|..|.+++..|+.+|.+.+++.... .++.+.+.++.+|+..+.
T Consensus        53 g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~-~~~~k~~~~~~~Ga~v~~  105 (319)
T d1p5ja_          53 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGT-TPALTIERLKNEGATCKV  105 (319)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTT-CCHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHhhhccccceeccccc-cccccccccccceecccc
Confidence            33445667679999999999999999998888554 477888888889987654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.79  E-value=0.53  Score=36.69  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      .|+|.|| |+.|++++..++..|.++.++-+
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~   33 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILER   33 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEeC
Confidence            5899999 99999999999999998887764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.69  E-value=0.93  Score=29.86  Aligned_cols=31  Identities=16%  Similarity=0.146  Sum_probs=28.0

Q ss_pred             CEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          126 DSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       126 ~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ++++|.|+ |.+|.-+++.++.+|.++..+.+
T Consensus        22 ~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGG-GYIGLELGIAYRKLGAQVSVVEA   52 (115)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHTCEEEEECS
T ss_pred             CeEEEECC-CHHHHHHHHHHhhcccceEEEee
Confidence            89999999 99999999999999999877764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=82.20  E-value=0.63  Score=34.87  Aligned_cols=95  Identities=12%  Similarity=0.140  Sum_probs=55.4

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHH---cCCcEEEEecCCCCcHHHHHHHHh----CCCcEEEecChhhHHHHHHHhcC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARH---RGIHSINIIRDRAGSDEAKEKLKG----LGADEVFTESQLEVKNVKGLLAN  194 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~---~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~i~~~~~~  194 (314)
                      ++++.+||=.|++  .|..+..+++.   -+++++++- .   ++...+.+++    .+....+.....+   ...... 
T Consensus        37 ~~~~~~vLDlGCG--tG~~~~~l~~~~~~~~~~v~giD-~---S~~ml~~A~~~~~~~~~~~~~~~~~~d---~~~~~~-  106 (225)
T d1im8a_          37 VTADSNVYDLGCS--RGAATLSARRNINQPNVKIIGID-N---SQPMVERCRQHIAAYHSEIPVEILCND---IRHVEI-  106 (225)
T ss_dssp             CCTTCEEEEESCT--TCHHHHHHHHTCCCSSCEEEEEC-S---CHHHHHHHHHHHHTSCCSSCEEEECSC---TTTCCC-
T ss_pred             cCCCCEEEEeccc--hhhHHHHHHHhhcCCCCceEEeC-C---CHHHHHHHHHHhHhhcccchhhhccch---hhcccc-
Confidence            7899999999983  36667777775   366777655 3   6777666643    3322111111100   111111 


Q ss_pred             CCCCcEEEecCCC---------ccHHHHHHhcccCCEEEEEc
Q 021311          195 LPEPALGFNCVGG---------NSASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       195 ~g~~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g  227 (314)
                       ..+|+++-+...         ..+.++.+.|+|+|.++...
T Consensus       107 -~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         107 -KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             -CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence             136776654432         12378889999999999753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.06  E-value=0.77  Score=35.19  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=24.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEe
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINII  156 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~  156 (314)
                      .|+|+|| |..|++++.+++..|.+.+.+.
T Consensus         3 ~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~   31 (288)
T d3c96a1           3 DILIAGA-GIGGLSCALALHQAGIGKVTLL   31 (288)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCeEEEE
Confidence            6899999 9999999999999997444443

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.87  E-value=1.9  Score=30.86  Aligned_cols=95  Identities=12%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHc-CCcEEEEecC-CCC-cHHHHHHH-HhC---CCcEEEecChhhHHHHHHHhcCCCCCc
Q 021311          127 SIVQNGATSIVGQCIIQIARHR-GIHSINIIRD-RAG-SDEAKEKL-KGL---GADEVFTESQLEVKNVKGLLANLPEPA  199 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~-g~~vi~~~~~-~~~-~~~~~~~~-~~l---g~~~~~~~~~~~~~~i~~~~~~~g~~d  199 (314)
                      +|.|.||+|-+|+-+++++..+ ..++..+... ..+ ..++.... ..+   .........+..     .  ... .+|
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~-~~d   74 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVR-----D--FSA-DVD   74 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGG-----G--TCT-TCC
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhh-----h--hhc-ccc
Confidence            6889999999999999999887 5565544321 110 11111111 111   111111111110     0  011 499


Q ss_pred             EEEecCCCccHHHHH-HhcccCCEEEEEcCC
Q 021311          200 LGFNCVGGNSASKVL-KFLSQGGTMVTYGGM  229 (314)
Q Consensus       200 ~v~d~~g~~~~~~~~-~~l~~~G~~v~~g~~  229 (314)
                      ++|-|.+........ ..+..+-+++..+..
T Consensus        75 vvf~alp~~~s~~~~~~~~~~~~~vIDlSad  105 (179)
T d2g17a1          75 VVFLATAHEVSHDLAPQFLQAGCVVFDLSGA  105 (179)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             eeeccccchhHHHHhhhhhhcCceeeccccc
Confidence            999999987775444 455666677777643

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.85  E-value=5.8  Score=28.58  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=58.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcC-----CcEEEEecCCCCcHHHHHHHHhCC-------CcE---------------EEe
Q 021311          127 SIVQNGATSIVGQCIIQIARHRG-----IHSINIIRDRAGSDEAKEKLKGLG-------ADE---------------VFT  179 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g-----~~vi~~~~~~~~~~~~~~~~~~lg-------~~~---------------~~~  179 (314)
                      +|.|.|- |-+|.++.+.+...+     .+++.+.+.. .+.+...++.+..       .+.               +++
T Consensus         4 kigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~-~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~   81 (190)
T d1k3ta1           4 KVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMN-TDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVN   81 (190)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESC-CCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEET
T ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCC-CCHHHHHHHhhccccccCCCceEEEccCccccccccceEEc
Confidence            5789998 999999987665432     3455555543 2566666664322       111               111


Q ss_pred             cC-------hhhHHHHHHHhcCCCCCcEEEecCCCccH-HHHHHhcccCCEEEEEcCCCC
Q 021311          180 ES-------QLEVKNVKGLLANLPEPALGFNCVGGNSA-SKVLKFLSQGGTMVTYGGMSK  231 (314)
Q Consensus       180 ~~-------~~~~~~i~~~~~~~g~~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~  231 (314)
                      ..       +.++.++.+...   ++|+|+||+|--.. +.+...+..|.+-|++..+..
T Consensus        82 g~~i~~~~~~~~p~~i~W~~~---gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  138 (190)
T d1k3ta1          82 GHRILCVKAQRNPADLPWGKL---GVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS  138 (190)
T ss_dssp             TEEEEEEECCSCGGGSCHHHH---TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CceEEecccCCChhHCCHhhc---CCcEEEEecccccccccchhhcccCcceeeeccCCc
Confidence            10       011112211111   49999999997544 666677888877777776544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=2.5  Score=32.82  Aligned_cols=96  Identities=9%  Similarity=0.099  Sum_probs=54.5

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC---------Cc-EEEecChhhHHHHHHH
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG---------AD-EVFTESQLEVKNVKGL  191 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg---------~~-~~~~~~~~~~~~i~~~  191 (314)
                      ....++|||+|+++  |..+-.+++..+...+.+++-   +++-.+.+++.-         .. .++..+.  .+-+++ 
T Consensus        76 ~~~pk~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEi---D~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da--~~~l~~-  147 (285)
T d2o07a1          76 HPNPRKVLIIGGGD--GGVLREVVKHPSVESVVQCEI---DEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG--FEFMKQ-  147 (285)
T ss_dssp             SSSCCEEEEEECTT--SHHHHHHTTCTTCCEEEEEES---CHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--HHHHHT-
T ss_pred             CcCcCeEEEeCCCc--hHHHHHHHHcCCcceeeeccC---CHHHHHHHHhhchhhccccCCCCceEEEccH--HHHHhc-
Confidence            34558999999733  555666777767777777764   555555554321         11 1221111  111222 


Q ss_pred             hcCCCCCcEEEecCCCc-----------cHHHHHHhcccCCEEEEEc
Q 021311          192 LANLPEPALGFNCVGGN-----------SASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       192 ~~~~g~~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~g  227 (314)
                      +.+  ++|+|+--...+           -+..+.+.|+++|.++.-.
T Consensus       148 ~~~--~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         148 NQD--AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             CSS--CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC--CCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            222  599997433221           1367788999999998754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=81.65  E-value=5.2  Score=27.65  Aligned_cols=36  Identities=8%  Similarity=0.218  Sum_probs=28.7

Q ss_pred             CCCCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          122 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       122 ~~~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      .++..+|.|+|+ |.+|..++.++...+...+.+.+.
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~   39 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDV   39 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEe
Confidence            456789999998 999998888887777656777764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.33  E-value=0.36  Score=35.14  Aligned_cols=33  Identities=12%  Similarity=0.147  Sum_probs=28.6

Q ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          124 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       124 ~~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      ++..|+|+|+ |+.|+.++..+.+.|.+++++-+
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~   36 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITG   36 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEe
Confidence            4567999999 99999999999999999887753

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.32  E-value=4.1  Score=32.16  Aligned_cols=100  Identities=7%  Similarity=0.051  Sum_probs=59.2

Q ss_pred             CCCCEEEEcCCCcHHHHHHHHHHH-HcCCcEEEEecCCCCcHHHHH----HHHhCCCcEEEecChhhHHHHHHHhcCCCC
Q 021311          123 NSGDSIVQNGATSIVGQCIIQIAR-HRGIHSINIIRDRAGSDEAKE----KLKGLGADEVFTESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       123 ~~~~~vlI~g~~g~~G~~a~~la~-~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~~~~~~~~~~~~i~~~~~~~g~  197 (314)
                      +..+++.|+|+ |..+.+.++.+. .+..+.+.+.+.   ++++.+    .++..+.....+. .   +.+    .   +
T Consensus       123 ~~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r---~~e~~~~~~~~~~~~~~~~~~~~-~---~a~----~---~  187 (320)
T d1omoa_         123 KNSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDV---REKAAKKFVSYCEDRGISASVQP-A---EEA----S---R  187 (320)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECS---SHHHHHHHHHHHHHTTCCEEECC-H---HHH----T---S
T ss_pred             CCccEEEEecC-cccHHHHHHHHHHHhhhhhcccccC---CHHHHHHHHHHHHhcCCccccch-h---hhh----c---c
Confidence            44578899998 888887776555 456666655543   444432    3344554433322 1   112    1   3


Q ss_pred             CcEEEecCCCccHHHHHHhcccCCEEEEEcCCCCCCcccc
Q 021311          198 PALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVS  237 (314)
Q Consensus       198 ~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  237 (314)
                      .|+|+-|+.+..----.+.++++-++..+|...-....++
T Consensus       188 aDiV~taT~s~~P~~~~~~l~~G~hv~~iGs~~p~~~Eld  227 (320)
T d1omoa_         188 CDVLVTTTPSRKPVVKAEWVEEGTHINAIGADGPGKQELD  227 (320)
T ss_dssp             SSEEEECCCCSSCCBCGGGCCTTCEEEECSCCSTTCCCBC
T ss_pred             ccEEEEeccCcccccchhhcCCCCeEeecCCccccccccC
Confidence            9999988876332111257999999999996543333343

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=80.94  E-value=2.5  Score=31.36  Aligned_cols=90  Identities=11%  Similarity=0.077  Sum_probs=54.5

Q ss_pred             EEEEcCCCcHHHH-HHHHHHHH-cCCcEEEEecCCCCcHHH-HHHHHhCCCc--EEEecChhhHHHHHHHhcCCCCCcEE
Q 021311          127 SIVQNGATSIVGQ-CIIQIARH-RGIHSINIIRDRAGSDEA-KEKLKGLGAD--EVFTESQLEVKNVKGLLANLPEPALG  201 (314)
Q Consensus       127 ~vlI~g~~g~~G~-~a~~la~~-~g~~vi~~~~~~~~~~~~-~~~~~~lg~~--~~~~~~~~~~~~i~~~~~~~g~~d~v  201 (314)
                      +|-|+|+ |.+|. ..+...+. -+.+++++++.   ++++ ....+.++..  .+..+.+     +.++.... .+|+|
T Consensus        35 riaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~---~~~~a~~~~~~~~i~~~~~~~~~d-----~~ell~~~-~iD~V  104 (221)
T d1h6da1          35 GYAIVGL-GKYALNQILPGFAGCQHSRIEALVSG---NAEKAKIVAAEYGVDPRKIYDYSN-----FDKIAKDP-KIDAV  104 (221)
T ss_dssp             EEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECS---CHHHHHHHHHHTTCCGGGEECSSS-----GGGGGGCT-TCCEE
T ss_pred             EEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecC---CHHHHHHHHHhhccccccccccCc-----hhhhcccc-cceee
Confidence            6789998 88885 33343333 37788888875   4444 3444556543  2222222     33334443 49999


Q ss_pred             EecCCCcc-HHHHHHhcccCCEEEEEc
Q 021311          202 FNCVGGNS-ASKVLKFLSQGGTMVTYG  227 (314)
Q Consensus       202 ~d~~g~~~-~~~~~~~l~~~G~~v~~g  227 (314)
                      +.|+.... ...+..+|..+ +-|++.
T Consensus       105 ~I~tp~~~H~~~~~~al~~g-k~v~~E  130 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKAG-KHVMCE  130 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHTT-CEEEEC
T ss_pred             eeccchhhhhhHHHHhhhcc-hhhhcC
Confidence            99888765 46777777665 555554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.71  E-value=3.9  Score=28.16  Aligned_cols=45  Identities=11%  Similarity=0.102  Sum_probs=36.1

Q ss_pred             HHHHHHHHhhcCCCCCEEEEc--CCCcHHHHHHHHHHHHcCCcEEEEecC
Q 021311          111 TALRMLEDFTTLNSGDSIVQN--GATSIVGQCIIQIARHRGIHSINIIRD  158 (314)
Q Consensus       111 ta~~~l~~~~~~~~~~~vlI~--g~~g~~G~~a~~la~~~g~~vi~~~~~  158 (314)
                      |....+ . .+..+++.++|.  |+ |-+|+-+++.+..+|.+|..+...
T Consensus        27 t~~d~l-~-~~~~~~~~vvi~d~gg-g~ig~e~A~~la~~G~~Vtlv~~~   73 (156)
T d1djqa2          27 TPEQVM-D-GKKKIGKRVVILNADT-YFMAPSLAEKLATAGHEVTIVSGV   73 (156)
T ss_dssp             CHHHHH-H-TCSCCCSEEEEEECCC-SSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CHHHHh-c-CccccCCceEEEecCC-ChHHHHHHHHHHHcCCeEEEEecC
Confidence            445554 2 567888998887  66 999999999999999999888853

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.38  E-value=7.3  Score=30.00  Aligned_cols=103  Identities=16%  Similarity=0.139  Sum_probs=53.8

Q ss_pred             hcCCCCCEEEEcCCCcHHHHHHHHHHHHcC-CcEEEEecCCCCcHHHHHHHHhCCCcEEE-ecChhhHHHHHHHhcCCCC
Q 021311          120 TTLNSGDSIVQNGATSIVGQCIIQIARHRG-IHSINIIRDRAGSDEAKEKLKGLGADEVF-TESQLEVKNVKGLLANLPE  197 (314)
Q Consensus       120 ~~~~~~~~vlI~g~~g~~G~~a~~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~i~~~~~~~g~  197 (314)
                      ...++|++||=..| ++=|- +.+++.... ..+++.-....+...-.+.++++|...+. ...+.....   ..... .
T Consensus        98 L~~~~g~~vLD~CA-aPGgK-t~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~---~~~~~-~  171 (284)
T d1sqga2          98 LAPQNGEHILDLCA-APGGK-TTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ---WCGEQ-Q  171 (284)
T ss_dssp             HCCCTTCEEEEESC-TTCHH-HHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH---HHTTC-C
T ss_pred             cCccccceeEeccC-ccccc-hhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch---hcccc-c
Confidence            56899999986654 33233 334454433 34444443222222223455778876433 233222111   11122 4


Q ss_pred             CcEEEe---cCCCc--------------------------cHHHHHHhcccCCEEEEEcC
Q 021311          198 PALGFN---CVGGN--------------------------SASKVLKFLSQGGTMVTYGG  228 (314)
Q Consensus       198 ~d~v~d---~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~  228 (314)
                      ||.|+-   |+|.-                          .+.++++.+++||++|+..+
T Consensus       172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            888854   55531                          12456678899999997754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=80.25  E-value=1.4  Score=31.85  Aligned_cols=32  Identities=19%  Similarity=0.094  Sum_probs=27.5

Q ss_pred             CCEEEEcCCCcHHHHHHHHHHHHcCCcEEEEec
Q 021311          125 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIR  157 (314)
Q Consensus       125 ~~~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~  157 (314)
                      =++|.|+|+ |.+|...+.++...|.+|+..-.
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~   35 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDI   35 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEEC
Confidence            367999999 99999998888889999887664

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.01  E-value=2.1  Score=30.41  Aligned_cols=42  Identities=12%  Similarity=0.162  Sum_probs=31.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHHcCCcEEEEecCCCCcHHHHHHHHhCC
Q 021311          127 SIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLG  173 (314)
Q Consensus       127 ~vlI~g~~g~~G~~a~~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg  173 (314)
                      +|-|+|. |.+|...+.-+...|.++++.-+    ++++.+.+.+.+
T Consensus         3 kIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr----~~~~~~~l~~~~   44 (178)
T d1pgja2           3 DVGVVGL-GVMGANLALNIAEKGFKVAVFNR----TYSKSEEFMKAN   44 (178)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECS----SHHHHHHHHHHT
T ss_pred             EEEEEee-hHHHHHHHHHHHHCCCeEEEEEC----CHHHHHHHHHcC
Confidence            4678898 99999998888888999987764    566666554433