Citrus Sinensis ID: 021342

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFSGF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mesvdsrdeeaplvadslqvltpknytrdVHILSCAFLLIFLAYGAaqnlettvntegnlgtISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANlfpswytmvpasLYLGFAASIIWVGEGTYLTAAALSHasnhklhegtvigsfngefwgmfashQFVGNLITLAVlkddkggstsgtTLLFIVFLGVITLGTILMCFLRkeedkgeketadASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEivtpalgvsgvggaMAVYGAFDAIFLVELLLRWLYFSGF
Flexible Loop (DISEMBL)
mesvdsrdeeaplvadslqvltpknYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFSGF
Low Complexity Region (SEG)
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFSGF
Disordered region (IsUnstruct)
***************DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK**********DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFS**
Disordered Region (DISOPRED)
************************NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFSGF
Disordered Region (DISEMBL)
************LVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE********ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFSGF
Disordered Region (DISPRO)
********************LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED************FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFSGF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYFSGF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q94AA1	464	UNC93-like protein 3 OS=A	no	no	0.939	0.635	0.718	1e-115
Q86WB7	457	Protein unc-93 homolog A	no	no	0.853	0.586	0.322	1e-27
Q6DDL7	460	Protein unc-93 homolog A	N/A	no	0.828	0.565	0.296	2e-25
Q710D3	458	Protein unc-93 homolog A	yes	no	0.853	0.585	0.308	2e-24
Q93380	705	Putative potassium channe	yes	no	0.831	0.370	0.301	4e-24
Q9Y115	538	UNC93-like protein OS=Dro	yes	no	0.859	0.501	0.280	2e-22
Q5SPF7	465	Protein unc-93 homolog A	yes	no	0.853	0.576	0.275	7e-22
A2VE54	457	Protein unc-93 homolog A	yes	no	0.853	0.586	0.292	9e-21
O43934	449	UNC93-like protein MFSD11	no	no	0.729	0.510	0.261	9e-14
Q8BJ51	449	UNC93-like protein MFSD11	no	no	0.729	0.510	0.261	1e-13

>sp|Q94AA1|UN933_ARATH UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/302 (71%), Positives = 245/302 (81%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES +  DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q86WB7|UN93A_HUMAN Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 143/304 (47%), Gaps = 36/304 (11%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           R+V ++S  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  L++  L
Sbjct: 6   RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERL 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  +IL   GY  F   N F SWYT++P S+ LG  A+ +W  + TYLT    +HA  
Sbjct: 66  GCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGST----------------- 189
                  ++  + G F+ +F S    GNLI+  V        T                 
Sbjct: 126 AGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGASDCLMA 185

Query: 190 --------SGTTLLFIVFLGVITLGTILM-----CFLRKEED-KGEKETADASVNFYSYL 235
                     +  L    LG+ T   +L       FL+   D + E E    SV F+S L
Sbjct: 186 TTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTL 245

Query: 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 295
           +S  K    L  D R+ L+I L  YSGLQQ F+ +E+T+  VT  LG+  VG  M  + A
Sbjct: 246 LSTFK----LYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSA 301

Query: 296 FDAI 299
            DA+
Sbjct: 302 TDAL 305

Homo sapiens (taxid: 9606)

>sp|Q6DDL7|UN93A_XENLA Protein unc-93 homolog A OS=Xenopus laevis GN=unc93a PE=2 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 54/314 (17%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           +++ I+S  FLL+F A+G  Q+L++++N++  LG  SL ++Y +    S+ V  +V++ +
Sbjct: 5   KNILIVSFGFLLLFTAFGGLQSLQSSLNSDEGLGVASLSVIYAALIVSSVFVPPIVIKKI 64

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  ++     Y  +   N + SWYT++P SL LGF  + +W  + TYLT +   +A  
Sbjct: 65  GCKWTIVASMCCYITYSLGNFYASWYTLIPTSLILGFGGAPLWAAKCTYLTESGNRYAEK 124

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL--------------------KDDKG 186
                  ++  + G F+ +F S    GNLI+  +                      D  G
Sbjct: 125 KGKLAKDIVNQYFGLFFLIFQSSGVWGNLISSLIFGQNYPAGSNDSFTDYSQCGANDCPG 184

Query: 187 -------GSTSGTTLLFIVFLGVIT----LGTILMCF------LRKEEDK-GEKETADAS 228
                  G+T  T  L    LGV T    L  IL+        LR ++ K G KE     
Sbjct: 185 TNFGNGTGTTKPTKSLIYTLLGVYTGSGVLAVILIAVFLDTINLRTDQLKPGTKEE---- 240

Query: 229 VNFYSYLVSLSKSI---TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSG 285
                   S SK I      L D R  L+IPL  YSG +Q F+  ++TK  VT +LG+  
Sbjct: 241 --------SFSKKILATVRHLKDKRQCLLIPLTMYSGFEQGFLSGDYTKSYVTCSLGIHF 292

Query: 286 VGGAMAVYGAFDAI 299
           VG  M  + A +A+
Sbjct: 293 VGYVMICFAATNAV 306

Xenopus laevis (taxid: 8355)

>sp|Q710D3|UN93A_MOUSE Protein unc-93 homolog A OS=Mus musculus GN=Unc93a PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 141/305 (46%), Gaps = 37/305 (12%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           ++V ++SC FLL+F AYG  QNL++++ +E  LG  +L  LY S    S+ +  ++++  
Sbjct: 6   KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  ++     Y +F   N   +WYT++P S+ LG  A+ +W  +GTYLT      A  
Sbjct: 66  GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL-------------------KDDKGG 187
                  V+  + G F+ +F S    GNLI+  V                    KD   G
Sbjct: 126 VGKLGKDVVNQYFGIFFLVFQSSGVWGNLISSLVFGKMSMQEAIPEEQLMSCGAKDCLMG 185

Query: 188 STS------GTTLLFIVFLGVIT----LGTILMC-FLRKEEDK--GEKETADASVNFYSY 234
             +       +  L    LG+ T    L  +L+  FL   EDK   E E        +S 
Sbjct: 186 PAATNSTHHPSQQLIYTLLGIYTGCGVLAILLVAVFLESLEDKLENEGERRPRPPPLWST 245

Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
           L+S       L  D R+ L++ L  YSG QQ F+  E+TK  VT ALG+  VG  M  + 
Sbjct: 246 LLS----TFMLFRDKRLCLLMFLPLYSGFQQEFLSGEYTKSYVTCALGIHFVGYVMICFS 301

Query: 295 AFDAI 299
           A  A+
Sbjct: 302 AMTAL 306

Mus musculus (taxid: 10090)

>sp|Q93380|UNC93_CAEEL Putative potassium channel regulatory protein unc-93 OS=Caenorhabditis elegans GN=unc-93 PE=1 SV=4

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 143/305 (46%), Gaps = 44/305 (14%)

Query: 32  ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
           ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct: 252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query: 91  ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
             ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct: 310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query: 151 EGTVIGSFNGEFWGMFASHQFVGNLI-----TLAVLKDDKGGSTS--------------- 190
           + TVI  F G F+ +    Q VGN++     TL+  +  +G   S               
Sbjct: 370 QTTVIVRFFGYFFMIVHCGQVVGNMVSSYIFTLSYSQALRGPEDSIYDSCGYQFPKNLSD 429

Query: 191 ------------GTTLLFIVFLG----VITLGTILMCFLRKEEDKGEKETADASVNFYSY 234
                          +   V L     VI  G I+  FL                N   +
Sbjct: 430 LTELAESNLARPPQKVYVAVCLAYLACVIISGMIMSMFLNALAKDARNRKMAQKFNSEIF 489

Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
            + L       L +++ +L++PL  ++GL+QAF+   +TK  V   LG+  +G  MA +G
Sbjct: 490 YLMLKH-----LINIKFMLLVPLTIFNGLEQAFLVGVYTKAFVGCGLGIWQIGFVMACFG 544

Query: 295 AFDAI 299
             DA+
Sbjct: 545 ISDAV 549

May contribute to coordination of muscle contraction as regulatory subunit of a nonessential potassium channel complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9Y115|UN93L_DROME UNC93-like protein OS=Drosophila melanogaster GN=CG4928 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 148/310 (47%), Gaps = 40/310 (12%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF--TCFSLVASLVVRV 85
           +++ I+S AF++ F A+    NL++++N +  LGT+SL  +Y +   +C  L  +L++R 
Sbjct: 44  KNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFL-PTLIIRK 102

Query: 86  LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
           L  K  L+     Y  ++A  LFP +YT+VPA + +G  A+ +W  + TYLT     +A 
Sbjct: 103 LTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKATYLTQVGQVYAK 162

Query: 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL----------------KDDKG--G 187
             +     +I  F G F+  + S +  GNLI+  VL                ++D    G
Sbjct: 163 ITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNTTVSEEDLQFCG 222

Query: 188 STSGTT-----------------LLFIVFLGVITLG-TILMCFLRKEEDKGEKETADASV 229
           +   TT                  + +++L  I     I+  FL   +  GEK     S 
Sbjct: 223 ANFCTTGSGGHGNLERPPEDEIFEISMIYLSCIVAAVCIIAFFLDPLKRYGEKRKGSNSA 282

Query: 230 NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGA 289
              S L  LS +    +    + L+IP+  + G++QAF+ A+FT+  V  ALGV+ +G  
Sbjct: 283 AELSGLQLLSATFRQ-MKKPNLQLLIPITVFIGMEQAFIGADFTQAYVACALGVNKIGFV 341

Query: 290 MAVYGAFDAI 299
           M  +G  +A+
Sbjct: 342 MICFGVVNAL 351

Drosophila melanogaster (taxid: 7227)

>sp|Q5SPF7|UN93A_DANRE Protein unc-93 homolog A OS=Danio rerio GN=unc93a PE=3 SV=1

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 37/305 (12%)

Query: 27  TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRV 85
           T++V ++S  FLL+F AYG  Q+L++++N E  +G ISL ++Y +    S+ +  ++++ 
Sbjct: 5   TKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMIKN 64

Query: 86  LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
           LG K  +++    Y  +   NL P W +++  S  LG   S +W  + TYLT +      
Sbjct: 65  LGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQGQ 124

Query: 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-------------------- 185
            H      +I  + G F+ +F S    GNL++  +   D+                    
Sbjct: 125 KHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSLIFGQDQNIVPKENLEFCGVSTCLDNF 184

Query: 186 ---GGSTSGTTLLFIVFLGV-ITLGTILMCF-------LRKEEDKGEKETADASVNFYSY 234
              G ST  +  L    LG  I +G + + F       + ++E K E  +   + +F+  
Sbjct: 185 TVIGNSTRPSKHLVDTLLGCYIGVGLLAIIFVAVFLDNIDRDEAK-EFRSTKGNKSFWDT 243

Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
            ++  K +       R+LL+IPL  YSG +Q+F+  E+TK  VT ALG+  VG  M  + 
Sbjct: 244 FLATFKLLRD----PRLLLLIPLTMYSGFEQSFLSGEYTKNYVTCALGIHNVGFVMICFA 299

Query: 295 AFDAI 299
           A +++
Sbjct: 300 ASNSL 304

Danio rerio (taxid: 7955)

>sp|A2VE54|UN93A_BOVIN Protein unc-93 homolog A OS=Bos taurus GN=UNC93A PE=2 SV=1

 Score =  101 bits (251), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 36/304 (11%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           ++V +LS  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  +++  L
Sbjct: 6   KNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGKL 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  L+L    Y  F   N + SWYT++PAS+ +G  A+ +W  +GTYLT      A  
Sbjct: 66  GCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQARK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLI---------TLAVLKDDK------------ 185
                  V+  + G F+ +F S    GNLI         T   + +++            
Sbjct: 126 TGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSLVFGQMPTQGTIPEEQLQACGASDCLMA 185

Query: 186 ----GGSTSGTTLLFIVFLGVIT----LGTILMC-FLRKEED-KGEKETADASVNFYSYL 235
                 +   +  L    LG+ T    L  +LM  FL    D + E E    +  F+S L
Sbjct: 186 TLSANSTNRPSQDLIYTLLGIYTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTL 245

Query: 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 295
           +S  K +      + +LL       SG +QAF+  ++T+   T ALG+  VG  M  +GA
Sbjct: 246 LSTFKLLRDKRLRLLILLP----MLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGA 301

Query: 296 FDAI 299
            DA+
Sbjct: 302 ADAL 305

Bos taurus (taxid: 9913)

>sp|O43934|MFS11_HUMAN UNC93-like protein MFSD11 OS=Homo sapiens GN=MFSD11 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 27/256 (10%)

Query: 29  DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
           ++ IL  AF+ +F A+    N+  TV    N       G  S+ I+Y  F+  +L+   V
Sbjct: 10  NIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSV 69

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V ++G + ++      Y +++A  + P  ++   AS+++G AA+++W  +G  LT  +  
Sbjct: 70  VAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGV 202
           H+          IG  +G FW +  S  F GNL      +     S S    +FI    +
Sbjct: 130 HS----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVI 179

Query: 203 ITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITTLLADVRM 251
             +GT+L   +RK + +   GE E++D        ++ N  +  V   K    L     M
Sbjct: 180 SLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVNESAQNNLTKAVDAFKKSFKLCVTKEM 239

Query: 252 LLIIPLFAYSGLQQAF 267
           LL+    AY+GL+  F
Sbjct: 240 LLLSITTAYTGLELTF 255

Homo sapiens (taxid: 9606)

>sp|Q8BJ51|MFS11_MOUSE UNC93-like protein MFSD11 OS=Mus musculus GN=Mfsd11 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 27/256 (10%)

Query: 29  DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
           ++ IL  AF+ +F A+    N+  TV    N       G  SL I+Y  F+  +L+   V
Sbjct: 10  NIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSV 69

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V ++G + ++ +    Y +++A  + P  ++   AS+++G AA+++W  +G  LT  +  
Sbjct: 70  VAIVGPQISMFVSGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGV 202
           H           IG  +G FW +  S  F GNL      +     S      +FI    +
Sbjct: 130 HT----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISEHDRRTVFIALTVI 179

Query: 203 ITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITTLLADVRM 251
             +GT+L   +RK + +   GE+E+ D        ++ N  +  V   K    L     M
Sbjct: 180 SLVGTVLFFLIRKPDPENVLGEEESCDDQDMEATESAQNNVTKAVDAFKKSLRLCVTREM 239

Query: 252 LLIIPLFAYSGLQQAF 267
           LL+    AY+GL+  F
Sbjct: 240 LLLSVTTAYTGLELTF 255

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
359481565	444	PREDICTED: UNC93-like protein-like [Viti	0.952	0.673	0.765	1e-128
255581050	439	conserved hypothetical protein [Ricinus	0.952	0.681	0.745	1e-122
297833712	437	hypothetical protein ARALYDRAFT_317751 [	0.936	0.672	0.73	1e-115
224087399	442	predicted protein [Populus trichocarpa]	0.952	0.676	0.732	1e-114
51971130	437	unnamed protein product [Arabidopsis tha	0.939	0.675	0.718	1e-113
30680880	437	UNC93-like protein [Arabidopsis thaliana	0.939	0.675	0.718	1e-113
30680871	464	UNC93-like protein [Arabidopsis thaliana	0.939	0.635	0.718	1e-113
449439988	430	PREDICTED: UNC93-like protein 3-like [Cu	0.939	0.686	0.716	1e-112
449530173	430	PREDICTED: UNC93-like protein 3-like [Cu	0.939	0.686	0.716	1e-112
449439994	430	PREDICTED: UNC93-like protein 3-like [Cu	0.939	0.686	0.702	1e-110

>gi|359481565|ref|XP_002273762.2| PREDICTED: UNC93-like protein-like [Vitis vinifera] gi|147782828|emb|CAN76819.1| hypothetical protein VITISV_029718 [Vitis vinifera] gi|297741472|emb|CBI32604.3| unnamed protein product [Vitis vinifera]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/299 (76%), Positives = 262/299 (87%)

Query: 1   MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
           M+SVDSRDEE+PLV    Q  T +N+TRDVHILSC+FLLIFLAYGA QNLE++VNT+ +L
Sbjct: 1   MDSVDSRDEESPLVVSDSQSKTLQNHTRDVHILSCSFLLIFLAYGATQNLESSVNTDEDL 60

Query: 61  GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
           GTI+LGILY SFT FSL+ASLVVR++GSKNALILGTTGYWLF+AANL P W TMVPAS+Y
Sbjct: 61  GTIALGILYLSFTIFSLIASLVVRMMGSKNALILGTTGYWLFMAANLKPRWSTMVPASVY 120

Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
           LGFAAS+IWVG+GTYLTA A SHA+++ LHEGTVIG+FNGEFWGMFASHQF GNLITLA+
Sbjct: 121 LGFAASVIWVGQGTYLTATARSHANDNNLHEGTVIGNFNGEFWGMFASHQFAGNLITLAL 180

Query: 181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 240
           LKD   GS  GTTLLFIVFL  +TLGTILM FLR+ ++KGE+ + + +V FYSY VSLSK
Sbjct: 181 LKDGTKGSAGGTTLLFIVFLCSMTLGTILMWFLRRRDNKGEEGSLEPAVGFYSYAVSLSK 240

Query: 241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
           S+ T L DVRMLLIIPLF YSGLQQAFVWAEFTK IVTPALGVSGVGG+MAV+GAFDAI
Sbjct: 241 SVITPLFDVRMLLIIPLFVYSGLQQAFVWAEFTKYIVTPALGVSGVGGSMAVFGAFDAI 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581050|ref|XP_002531341.1| conserved hypothetical protein [Ricinus communis] gi|223529063|gb|EEF31048.1| conserved hypothetical protein [Ricinus communis]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/299 (74%), Positives = 260/299 (86%)

Query: 1   MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
           M + D+RDEE PLV D+LQ   P+N+TRD+HILS AFLL+FLAYGAAQNL+TT+NT  +L
Sbjct: 1   MATEDARDEERPLVLDNLQNHAPQNHTRDIHILSSAFLLVFLAYGAAQNLQTTINTVHDL 60

Query: 61  GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
           GTISLGILY SFT FS++ASLVVR LGSKNA++LGTTGYWLF+AANL P+WYTMVPASLY
Sbjct: 61  GTISLGILYLSFTFFSVIASLVVRFLGSKNAVVLGTTGYWLFIAANLMPTWYTMVPASLY 120

Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
           LGFAASIIWVG+GTYLT+ A SHA+++ LHEGTVIG+FNGEFWG+FA HQ VGNLI+LA+
Sbjct: 121 LGFAASIIWVGQGTYLTSTARSHAADYDLHEGTVIGNFNGEFWGVFACHQLVGNLISLAI 180

Query: 181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 240
           L+D  GG+TSGTTLLF VFL ++TLG ILMCFL K   KGE+   D+SV+ YS L+S SK
Sbjct: 181 LRDGTGGTTSGTTLLFFVFLCIVTLGIILMCFLSKRVPKGEEGREDSSVSLYSSLISKSK 240

Query: 241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
           S+   L D+RMLLIIPL AYSGLQQAFVWAEFTK+IVTPALGVSGVGG+MAVYGAFDAI
Sbjct: 241 SVIAPLLDIRMLLIIPLIAYSGLQQAFVWAEFTKDIVTPALGVSGVGGSMAVYGAFDAI 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833712|ref|XP_002884738.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata] gi|297330578|gb|EFH60997.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/300 (73%), Positives = 246/300 (82%), Gaps = 6/300 (2%)

Query: 4   VDSR-DEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
           +DSR DEEAPLV+ S    +    K+YTRDVHILS +FLLIFLAYGAAQNLETTVN +  
Sbjct: 1   MDSRNDEEAPLVSASGEDRKFRAGKSYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58

Query: 60  LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
           LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct: 59  LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118

Query: 120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
           YLGFAASIIWVG+GTYLT+ A SHA +H LHEG+VIG FNGEFW MFA HQ  GNLITLA
Sbjct: 119 YLGFAASIIWVGQGTYLTSIARSHAKDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178

Query: 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS 239
           +LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  KE   + V     LVSL 
Sbjct: 179 LLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKEPVGSPVGLVDSLVSLP 238

Query: 240 KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
           + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA DA+
Sbjct: 239 RMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAV 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087399|ref|XP_002308151.1| predicted protein [Populus trichocarpa] gi|222854127|gb|EEE91674.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/303 (73%), Positives = 257/303 (84%), Gaps = 4/303 (1%)

Query: 1   MESVDS-RDEEAPLVADSLQV---LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNT 56
           M S+D+ RDEE P VA +  V    T +N+T+DVHILS AFLLIFLAYGAAQNLETT+NT
Sbjct: 1   MASMDNNRDEEEPFVAAAASVDNSETLRNHTKDVHILSSAFLLIFLAYGAAQNLETTLNT 60

Query: 57  EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVP 116
           + ++GTISLGILY SFT FSL+AS VVR +GSKNA++LGT+GYWLF+AANL P+WYTMVP
Sbjct: 61  KDDMGTISLGILYVSFTFFSLIASSVVRFMGSKNAVLLGTSGYWLFIAANLKPTWYTMVP 120

Query: 117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
           ASLYLGFAASIIWVG+GTYLT+ A S A ++ LHEGTVIG+FNGEFWGMFASHQFVGNLI
Sbjct: 121 ASLYLGFAASIIWVGQGTYLTSTARSQARDYHLHEGTVIGNFNGEFWGMFASHQFVGNLI 180

Query: 177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLV 236
           +LA+L++   GSTSGTTLLF VFL  +TLGTIL+CFL K  D GE+   D+SV+ YS L 
Sbjct: 181 SLAILRNGTEGSTSGTTLLFTVFLCSMTLGTILVCFLSKRVDGGEEGPKDSSVSLYSSLT 240

Query: 237 SLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAF 296
           SLSKS+ T L DVRMLLIIPL AYSGLQQAFVWAEFT++I TPALGVSGVGG+MAVYGAF
Sbjct: 241 SLSKSVITPLLDVRMLLIIPLIAYSGLQQAFVWAEFTEKIATPALGVSGVGGSMAVYGAF 300

Query: 297 DAI 299
           D I
Sbjct: 301 DTI 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971130|dbj|BAD44257.1| unnamed protein product [Arabidopsis thaliana] gi|51971419|dbj|BAD44374.1| unnamed protein product [Arabidopsis thaliana]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/302 (71%), Positives = 244/302 (80%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES    DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680880|ref|NP_850546.1| UNC93-like protein [Arabidopsis thaliana] gi|51971813|dbj|BAD44571.1| unnamed protein product [Arabidopsis thaliana] gi|222423196|dbj|BAH19575.1| AT3G09470 [Arabidopsis thaliana] gi|332641250|gb|AEE74771.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/302 (71%), Positives = 244/302 (80%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES    DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680871|ref|NP_187558.2| UNC93-like protein [Arabidopsis thaliana] gi|67462074|sp|Q94AA1.1|UN933_ARATH RecName: Full=UNC93-like protein 3 gi|15146218|gb|AAK83592.1| AT3g09470/F11F8_4 [Arabidopsis thaliana] gi|28460681|gb|AAO43565.1| At3g09470/F11F8_4 [Arabidopsis thaliana] gi|332641249|gb|AEE74770.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/302 (71%), Positives = 245/302 (81%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES +  DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439988|ref|XP_004137767.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 252/296 (85%), Gaps = 1/296 (0%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61  SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180

Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
           + GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S ++SLSKS+ 
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILSLSKSVV 239

Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA DA+
Sbjct: 240 APLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAADAV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530173|ref|XP_004172070.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 252/296 (85%), Gaps = 1/296 (0%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61  SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180

Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
           + GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S ++SLSKS+ 
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILSLSKSVV 239

Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA DA+
Sbjct: 240 APLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAADAV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439994|ref|XP_004137770.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 250/296 (84%), Gaps = 1/296 (0%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVA+LVVR LG+KNALILGTTGYWLF AANL P+W+TMVP+S+YLGF
Sbjct: 61  SLGILYLSFTFFSLVAALVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPSSVYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFW +FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWAVFASHQVIGNIISLVVLKD 180

Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
           + GGST+GTT+LFI+FL V+TLG +LM FLRK ED  E+E + +S +  S + SLSKS+ 
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRK-EDSKEEEPSLSSSSLRSSIFSLSKSVV 239

Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             LAD+RM+L IPL +YSGLQ AFVWA+FTKE+VTP+LGVSGVGGAMAVYGA DA+
Sbjct: 240 APLADIRMILTIPLISYSGLQAAFVWAKFTKEVVTPSLGVSGVGGAMAVYGAADAV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2074929	464	AT3G09470 "AT3G09470" [Arabido	0.936	0.633	0.72	4e-106
UNIPROTKB|Q86WB7	457	UNC93A "Protein unc-93 homolog	0.487	0.334	0.357	1.9e-33
UNIPROTKB|A2VE54	457	UNC93A "Protein unc-93 homolog	0.487	0.334	0.344	4.1e-30
FB|FBgn0027556	538	CG4928 [Drosophila melanogaste	0.528	0.308	0.333	6.7e-30
MGI|MGI:1933250	458	Unc93a "unc-93 homolog A (C. e	0.484	0.331	0.341	3.5e-29
WB|WBGene00006822	705	unc-93 [Caenorhabditis elegans	0.458	0.204	0.394	4.3e-29
UNIPROTKB|Q93380	705	unc-93 "Putative potassium cha	0.458	0.204	0.394	4.3e-29
ZFIN|ZDB-GENE-041014-304	467	unc93a "unc-93 homolog A (C. e	0.506	0.340	0.293	1.4e-27
UNIPROTKB|E2QT36	456	UNC93A "Uncharacterized protei	0.487	0.335	0.324	1.5e-26
DICTYBASE|DDB_G0291720	425	DDB_G0291720 [Dictyostelium di	0.875	0.647	0.302	4e-25

TAIR|locus:2074929 AT3G09470 "AT3G09470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 216/300 (72%), Positives = 245/300 (81%)

Query:     4 VDSR-DEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
             ++SR DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +  
Sbjct:     1 MESRNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58

Query:    60 LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct:    59 LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118

Query:   120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
             YLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLITLA
Sbjct:   119 YLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178

Query:   180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS 239
             +LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L SL 
Sbjct:   179 LLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLASLP 238

Query:   240 KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA DA+
Sbjct:   239 RMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAV 298

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q86WB7 UNC93A "Protein unc-93 homolog A" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 55/154 (35%), Positives = 84/154 (54%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             R+V ++S  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  L++  L
Sbjct:     6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERL 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  +IL   GY  F   N F SWYT++P S+ LG  A+ +W  + TYLT    +HA  
Sbjct:    66 GCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEK 125

Query:   147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
                    ++  + G F+ +F S    GNLI+  V
Sbjct:   126 AGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLV 159

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A2VE54 UNC93A "Protein unc-93 homolog A" [Bos taurus (taxid:9913)]

 Score = 232 (86.7 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
 Identities = 53/154 (34%), Positives = 83/154 (53%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             ++V +LS  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  +++  L
Sbjct:     6 KNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGKL 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  L+L    Y  F   N + SWYT++PAS+ +G  A+ +W  +GTYLT      A  
Sbjct:    66 GCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQARK 125

Query:   147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
                    V+  + G F+ +F S    GNLI+  V
Sbjct:   126 TGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSLV 159

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0027556 CG4928 [Drosophila melanogaster (taxid:7227)]

 Score = 244 (91.0 bits), Expect = 6.7e-30, Sum P(2) = 6.7e-30
 Identities = 57/171 (33%), Positives = 95/171 (55%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF--TCFSLVASLVVRV 85
             +++ I+S AF++ F A+    NL++++N +  LGT+SL  +Y +   +C  L  +L++R 
Sbjct:    44 KNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFL-PTLIIRK 102

Query:    86 LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
             L  K  L+     Y  ++A  LFP +YT+VPA + +G  A+ +W  + TYLT     +A 
Sbjct:   103 LTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKATYLTQVGQVYAK 162

Query:   146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTL 194
               +     +I  F G F+  + S +  GNLI+  VL      GGS+S TT+
Sbjct:   163 ITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNTTV 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

MGI|MGI:1933250 Unc93a "unc-93 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 3.5e-29, Sum P(2) = 3.5e-29
 Identities = 53/155 (34%), Positives = 86/155 (55%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             ++V ++SC FLL+F AYG  QNL++++ +E  LG  +L  LY S    S+ +  ++++  
Sbjct:     6 KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  ++     Y +F   N   +WYT++P S+ LG  A+ +W  +GTYLT      A  
Sbjct:    66 GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125

Query:   147 -HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
               KL +  V+  + G F+ +F S    GNLI+  V
Sbjct:   126 VGKLGKD-VVNQYFGIFFLVFQSSGVWGNLISSLV 159

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00006822 unc-93 [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
 Identities = 58/147 (39%), Positives = 88/147 (59%)

Query:    32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
             ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct:   252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query:    91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
               ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct:   310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query:   151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
             + TVI  F G F+ +    Q VGN+++
Sbjct:   370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055120 "striated muscle dense body" evidence=IDA

UNIPROTKB|Q93380 unc-93 "Putative potassium channel regulatory protein unc-93" [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
 Identities = 58/147 (39%), Positives = 88/147 (59%)

Query:    32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
             ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct:   252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query:    91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
               ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct:   310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query:   151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
             + TVI  F G F+ +    Q VGN+++
Sbjct:   370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396

GO:0015459 "potassium channel regulator activity" evidence=IGI

GO:0043266 "regulation of potassium ion transport" evidence=IGI

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

ZFIN|ZDB-GENE-041014-304 unc93a "unc-93 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 47/160 (29%), Positives = 85/160 (53%)

Query:    27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRV 85
             T++V ++S  FLL+F AYG  Q+L++++N E  +G ISL ++Y +    S+ +  ++++ 
Sbjct:     5 TKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMIKN 64

Query:    86 LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
             LG K  +++    Y  +   NL P W +++  S  LG   S +W  + TYLT +      
Sbjct:    65 LGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQGQ 124

Query:   146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK 185
              H      +I  + G F+ +F S    GNL++  +   D+
Sbjct:   125 KHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSLIFGQDQ 164

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2QT36 UNC93A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 50/154 (32%), Positives = 82/154 (53%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             ++V ++S  FLL+F AYG  Q+L++++  E  LG  +L  LY      S+ +  L+++  
Sbjct:     6 KNVLVVSFGFLLLFTAYGGLQSLQSSLYREEGLGVTALSTLYGGVLLSSMFLPPLLIKKF 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  +++    Y  F   N + SWYT++P S+ LG  A+ +W  + TYLT    + A N
Sbjct:    66 GCKWTIVVSMCCYVAFSLGNFYASWYTLIPTSILLGLGAAPLWSAQCTYLTIMGNTEAKN 125

Query:   147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
                    V+  + G F+ +F S    GNLI+  V
Sbjct:   126 VGKVGRDVVNQYFGIFFLIFQSSGVWGNLISSLV 159

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0291720 DDB_G0291720 [Dictyostelium discoideum (taxid:44689)]

 Score = 286 (105.7 bits), Expect = 4.0e-25, P = 4.0e-25
 Identities = 95/314 (30%), Positives = 161/314 (51%)

Query:     9 EEAPLVADSLQVLTP--KNYTR-DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL 65
             E  PL+    Q   P  +N ++ ++ +L  +F ++F A+   Q L+TT+N   NLG+ SL
Sbjct:    12 EVQPLLNSDYQYSKPSFRNRSKYNIIVLGLSFCILFSAFSPTQELQTTINK--NLGSDSL 69

Query:    66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAA 125
              +LY   +  + ++  V+  LG + +LI+GT  Y  ++AAN+  +  T+  AS+ LG   
Sbjct:    70 AVLYAFLSVTNFISPFVILKLGERLSLIVGTLTYSAYIAANIKVTIPTLYGASVLLGIGG 129

Query:   126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK 185
             +I+W  +G+++   +          E T IG+  G F+ +F  +Q +GNL T A++  DK
Sbjct:   130 AILWTAQGSFVIQCST---------EST-IGANTGLFFALFQINQIIGNLGTAALI--DK 177

Query:   186 GGSTSGTTLLFIVFLGVITLGTILMCFLRKE---EDKGE-KETADASVNFYSYLVSLSKS 241
              G  +   +LF++FLGV  L  +    L K     DKG+  E  + +++    L+S    
Sbjct:   178 AGLQN--EVLFLIFLGVSLLSILGFAILGKPVKVNDKGQIVEKENQTMSIRDRLLS---- 231

Query:   242 ITTLLADVR--MLLIIPLFAYSGLQQAFVWAEFT----KEIVTPALGVSG---VGGAMAV 292
              T +L   R   LL+ PL  YSG+ Q+F +  F     KE +   + V G     G+M +
Sbjct:   232 -TIVLFKDRPIQLLVAPLL-YSGISQSFFFGVFPQLLGKEWIGYVMAVFGFCDAAGSM-I 288

Query:   293 YGAFDAIFLVELLL 306
              G    IF  ++L+
Sbjct:   289 MGKLSDIFGRKILV 302

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
pfam05978	157	pfam05978, UNC-93, Ion channel regulatory protein	3e-15

>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 33  LSCAFLLIFLAYGAAQNLETTV----------NTEGNLGTISLGILYTSFTCFSLVASLV 82
           L   FL +F A+ +   +  +V                G  SL I+Y  FT   L A  V
Sbjct: 1   LGFGFLFLFTAFDSQGFILESVIHSLHERDPGTISAYAGYYSLAIIYFFFTVSCLFAPSV 60

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V +L  K A+++G   Y  F    LF + Y +  +S  LG  A+ +W G+G YLT     
Sbjct: 61  VDILTPKWAMVIGALCYASFQLGFLFLNSYYLYFSSALLGVGAAFLWTGQGQYLT----E 116

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
           +++         I       W +  S    G + 
Sbjct: 117 NSTRET------IERNTSIQWAIGKSSLIFGGIF 144

This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG3097	390	consensus Predicted membrane protein [Function unk	99.97
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.94
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	99.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.81
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.81
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.81
PRK03545	390	putative arabinose transporter; Provisional	99.8
KOG2533	495	consensus Permease of the major facilitator superf	99.8
PRK11663	434	regulatory protein UhpC; Provisional	99.78
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.77
PRK09705	393	cynX putative cyanate transporter; Provisional	99.77
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.77
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.76
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.76
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.76
PRK12307	426	putative sialic acid transporter; Provisional	99.76
PRK10091	382	MFS transport protein AraJ; Provisional	99.76
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.76
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.75
TIGR00893	399	2A0114 d-galactonate transporter.	99.75
PRK10133	438	L-fucose transporter; Provisional	99.74
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.74
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.74
PLN00028	476	nitrate transmembrane transporter; Provisional	99.74
TIGR00891	405	2A0112 putative sialic acid transporter.	99.74
PRK03633	381	putative MFS family transporter protein; Provision	99.73
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.73
TIGR00900	365	2A0121 H+ Antiporter protein.	99.72
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.72
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.72
PRK09874	408	drug efflux system protein MdtG; Provisional	99.72
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.72
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.71
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.71
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.71
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.71
TIGR00895	398	2A0115 benzoate transport.	99.71
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.7
PRK10642	490	proline/glycine betaine transporter; Provisional	99.69
PRK03699	394	putative transporter; Provisional	99.69
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.69
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.68
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.68
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.68
PRK11010	491	ampG muropeptide transporter; Validated	99.67
PRK11043	401	putative transporter; Provisional	99.67
TIGR00805	633	oat sodium-independent organic anion transporter.	99.66
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.66
PRK10054	395	putative transporter; Provisional	99.66
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.65
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.65
PRK12382	392	putative transporter; Provisional	99.65
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.64
PRK10489	417	enterobactin exporter EntS; Provisional	99.64
PRK10504	471	putative transporter; Provisional	99.63
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.63
PRK09952	438	shikimate transporter; Provisional	99.63
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.62
PRK03893	496	putative sialic acid transporter; Provisional	99.61
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.61
PRK05122	399	major facilitator superfamily transporter; Provisi	99.61
PRK15075	434	citrate-proton symporter; Provisional	99.61
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.6
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.58
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.58
TIGR00898	505	2A0119 cation transport protein.	99.56
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.55
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.55
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.54
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.54
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.54
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.54
KOG2532	466	consensus Permease of the major facilitator superf	99.53
TIGR00901	356	2A0125 AmpG-related permease.	99.52
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.51
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.51
KOG2615	451	consensus Permease of the major facilitator superf	99.51
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.5
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.5
PRK11902	402	ampG muropeptide transporter; Reviewed	99.45
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.39
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
PTZ00207	591	hypothetical protein; Provisional	99.35
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.35
KOG0254	513	consensus Predicted transporter (major facilitator	99.34
KOG0569	485	consensus Permease of the major facilitator superf	99.32
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.32
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.32
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.26
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.24
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.23
PRK15011	393	sugar efflux transporter B; Provisional	99.23
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.22
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.19
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.19
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.19
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.17
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.16
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.11
PRK05122	399	major facilitator superfamily transporter; Provisi	99.1
PRK15011	393	sugar efflux transporter B; Provisional	99.1
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.07
PRK10642	490	proline/glycine betaine transporter; Provisional	99.05
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.03
PRK12382	392	putative transporter; Provisional	99.02
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.01
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.0
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.99
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.99
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.97
PRK03699	394	putative transporter; Provisional	98.96
PRK09669	444	putative symporter YagG; Provisional	98.96
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.95
PRK09874	408	drug efflux system protein MdtG; Provisional	98.93
PRK10489	417	enterobactin exporter EntS; Provisional	98.92
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.9
PRK09705	393	cynX putative cyanate transporter; Provisional	98.89
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.87
PRK09528	420	lacY galactoside permease; Reviewed	98.87
PRK10429	473	melibiose:sodium symporter; Provisional	98.85
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.83
TIGR00898	505	2A0119 cation transport protein.	98.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.82
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.8
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.79
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.78
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.77
PF13347	428	MFS_2: MFS/sugar transport protein	98.77
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.76
PRK03545	390	putative arabinose transporter; Provisional	98.76
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.75
PRK03633	381	putative MFS family transporter protein; Provision	98.74
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.74
KOG2563	480	consensus Permease of the major facilitator superf	98.71
TIGR00893	399	2A0114 d-galactonate transporter.	98.7
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.69
PRK10504	471	putative transporter; Provisional	98.68
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.66
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.66
PRK09952	438	shikimate transporter; Provisional	98.64
PF13347	428	MFS_2: MFS/sugar transport protein	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.63
TIGR00895	398	2A0115 benzoate transport.	98.63
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.61
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.6
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.6
PRK03893	496	putative sialic acid transporter; Provisional	98.59
PRK11462	460	putative transporter; Provisional	98.59
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.59
TIGR00900	365	2A0121 H+ Antiporter protein.	98.57
PRK11663	434	regulatory protein UhpC; Provisional	98.54
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.54
PRK09848	448	glucuronide transporter; Provisional	98.53
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.52
PRK11010	491	ampG muropeptide transporter; Validated	98.52
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.5
KOG3626	735	consensus Organic anion transporter [Secondary met	98.49
TIGR00891	405	2A0112 putative sialic acid transporter.	98.47
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.46
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.46
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.46
PRK10054	395	putative transporter; Provisional	98.45
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.45
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.43
PRK12307	426	putative sialic acid transporter; Provisional	98.43
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.41
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.38
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.35
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.35
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.35
COG2211	467	MelB Na+/melibiose symporter and related transport	98.35
TIGR00901	356	2A0125 AmpG-related permease.	98.35
PRK09669	444	putative symporter YagG; Provisional	98.34
PRK09848	448	glucuronide transporter; Provisional	98.34
PRK15075	434	citrate-proton symporter; Provisional	98.34
COG2211	467	MelB Na+/melibiose symporter and related transport	98.33
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.33
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.3
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.29
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.26
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.24
PRK11902	402	ampG muropeptide transporter; Reviewed	98.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.21
PRK10091	382	MFS transport protein AraJ; Provisional	98.21
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.18
PRK10429	473	melibiose:sodium symporter; Provisional	98.17
PLN00028	476	nitrate transmembrane transporter; Provisional	98.17
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.16
PRK11043	401	putative transporter; Provisional	98.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.13
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.11
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.09
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.08
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.06
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.05
KOG3762	618	consensus Predicted transporter [General function	98.05
KOG0569	485	consensus Permease of the major facilitator superf	98.01
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.98
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.95
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.94
PRK11462	460	putative transporter; Provisional	97.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.91
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.89
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.88
COG0477	338	ProP Permeases of the major facilitator superfamil	97.88
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.85
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.81
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.79
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.78
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.77
PRK10133	438	L-fucose transporter; Provisional	97.74
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.73
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.71
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.65
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.6
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.58
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.52
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.52
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.51
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.43
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.35
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.35
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.22
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.02
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.02
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.01
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.97
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.95
KOG0254	513	consensus Predicted transporter (major facilitator	96.55
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.48
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.32
KOG2615	451	consensus Permease of the major facilitator superf	96.16
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.13
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.83
COG3202	509	ATP/ADP translocase [Energy production and convers	95.6
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.46
KOG2532	466	consensus Permease of the major facilitator superf	95.15
KOG0637	498	consensus Sucrose transporter and related proteins	94.76
PTZ00207	591	hypothetical protein; Provisional	94.47
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.44
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.33
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.11
PRK15462	493	dipeptide/tripeptide permease D; Provisional	93.92
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.51
PF12832	77	MFS_1_like: MFS_1 like family	93.25
KOG2533	495	consensus Permease of the major facilitator superf	92.04
KOG3098	461	consensus Uncharacterized conserved protein [Funct	90.97
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.31
PRK03612	521	spermidine synthase; Provisional	90.02
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	88.49
KOG0637	498	consensus Sucrose transporter and related proteins	88.12
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	87.93
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	87.56
KOG2563	480	consensus Permease of the major facilitator superf	87.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	85.92

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=99.97  E-value=3e-29  Score=221.52  Aligned_cols=289  Identities=37%  Similarity=0.526  Sum_probs=226.6

Q ss_pred             CCCCCCCcccCCc-cccCcc--ccccchhhhhHHHHHHHHHHHhhHhhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHH
Q 021342            6 SRDEEAPLVADSL-QVLTPK--NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLV   82 (314)
Q Consensus         6 ~~~~~~~l~~~~~-~p~n~~--~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l   82 (314)
                      -++++++...+.+ +-+|..  ...||+.++++++++.|.+|+..+++|..+|.  ++|..+++..|.....++++.|.+
T Consensus         4 ~~~~~~~~~s~~~~~~~~r~~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~~~   81 (390)
T KOG3097|consen    4 VGAYPNYNESEEEERRYRRKRLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMPLL   81 (390)
T ss_pred             cccccCCCCCCcccchhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcccchhhhhhHHHHHHHHHHHHH
Confidence            3566777776544 222322  57899999999999999999999999999985  788999999999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc-CCCCccchhhHHHH
Q 021342           83 VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH-KLHEGTVIGSFNGE  161 (314)
Q Consensus        83 ~~~~G~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~rg~~~~~  161 (314)
                      ++++|.|++|+++...|..|.+.+++|.+++++++....|+|+++.|.+.++|++++.++|+..+ +...+..+.+.+|.
T Consensus        82 Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~  161 (390)
T KOG3097|consen   82 IRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGE  161 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhH
Confidence            99999999999999999999999999999999999999999999999999999999999998877 44455667899999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHc---CC---C-------C--------CC--CCch--------hHHHHHHHHHHHHHHHHH
Q 021342          162 FWGMFASHQFVGNLITLAVLK---DD---K-------G--------GS--TSGT--------TLLFIVFLGVITLGTILM  210 (314)
Q Consensus       162 ~~~~~~~g~~~G~li~~~i~~---~~---~-------~--------~~--~~~~--------~~~~~~~~~~~~~~~~l~  210 (314)
                      |+++++.++.+|++++..+..   +.   +       +        ++  .+.+        ..+=.++..+.+++.++.
T Consensus       162 Ffii~~~~qv~gn~issli~~~~~~~~~~~sn~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~~~  241 (390)
T KOG3097|consen  162 FFIIFQCAQVWGNLISSLIMTLFLHGALSGSNLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVLIM  241 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCccceeeeecccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHHHH
Confidence            999999999999988766542   11   0       0        00  0000        001112334444444333


Q ss_pred             -HhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhHH
Q 021342          211 -CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGA  289 (314)
Q Consensus       211 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~  289 (314)
                       +++..-.+..++.      ..+.+..+.+.-++|.++|+++.++.|.+.+.|++++|..+.+++.|+.|++|++++|++
T Consensus       242 ~~~~~~l~r~~~~r------~~~~~~l~i~~l~~~~l~~~r~~llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~igf~  315 (390)
T KOG3097|consen  242 LFFLGALKRYGEKR------LASVSGLNIFQLTFKHLRDIRLRLLVPLTIFSGLEQAFLCADFTKAYVACALGVSRIGFA  315 (390)
T ss_pred             HHHHHHHhhhhhhh------hhcccccchHHHHHHHhcCcceeeeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Confidence             2222111110000      112234455666788999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHhHHHHH
Q 021342          290 MAVYGAFDAIFLV  302 (314)
Q Consensus       290 ~~~~G~~~~i~~~  302 (314)
                      |+++|+.+++++.
T Consensus       316 m~cfgv~~Av~S~  328 (390)
T KOG3097|consen  316 MACFGVGDAVASS  328 (390)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988775

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=210.85  Aligned_cols=261  Identities=28%  Similarity=0.418  Sum_probs=202.9

Q ss_pred             cccccchhhhhHHHHHHHHHHHhhHhhhhhh----c------CCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHH
Q 021342           24 KNYTRDVHILSCAFLLIFLAYGAAQNLETTV----N------TEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALI   93 (314)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i----~------~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~   93 (314)
                      ++.++++..+++++++++.+|++...+++++    |      .+++.|+.+++++|..++++|+++|++.++.|+||.|+
T Consensus         5 ~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv   84 (461)
T KOG3098|consen    5 RFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALV   84 (461)
T ss_pred             cchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHH
Confidence            4788999999999999999999988887765    2      24567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHH
Q 021342           94 LGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG  173 (314)
Q Consensus        94 ~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G  173 (314)
                      +|..+|..|.++++.+|.+-++.+.++.|+|++.+|++||.|+++++          .++++.++.+++|+..+.+.++|
T Consensus        85 ~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~s----------t~~tie~Nisi~Wai~~~~li~G  154 (461)
T KOG3098|consen   85 IGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNS----------TRETIERNISIFWAIGQSSLIIG  154 (461)
T ss_pred             HHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcC----------ChhhHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999997          45888999999999999999999


Q ss_pred             HHHHHHHHcCCC-CC--CCCchh-------------HHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchHHH
Q 021342          174 NLITLAVLKDDK-GG--STSGTT-------------LLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS  237 (314)
Q Consensus       174 ~li~~~i~~~~~-~~--~~~~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  237 (314)
                      +++...+..+.+ ++  ..+.++             .++.++..+..++++...++|.++...+++.     . +.+..+
T Consensus       155 gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~-----~-~~~~~~  228 (461)
T KOG3098|consen  155 GIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSS-----S-ETSFSE  228 (461)
T ss_pred             hHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhh-----c-cccHHH
Confidence            998877766543 11  111111             1111222222223333334443333222210     1 146788


Q ss_pred             HHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccc---cchhhHHHHHHhhHhHHH
Q 021342          238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALG---VSGVGGAMAVYGAFDAIF  300 (314)
Q Consensus       238 ~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg---~~~ig~~~~~~G~~~~i~  300 (314)
                      ++|.+.+++++++|+++.|.++++|+..+|+.+++|..+.. ...+   .-..++-+...|..+++.
T Consensus       229 ~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~  295 (461)
T KOG3098|consen  229 LLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIG  295 (461)
T ss_pred             HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHH
Confidence            89999999999999999999999999999999999987642 2333   344456777777777773

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=99.91  E-value=1.5e-23  Score=171.35  Aligned_cols=142  Identities=37%  Similarity=0.711  Sum_probs=132.0

Q ss_pred             hhHHHHHHHHHHHhhHhhhhhh----c------CCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHH
Q 021342           33 LSCAFLLIFLAYGAAQNLETTV----N------TEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (314)
Q Consensus        33 l~~~~~~~~~~~~~~~~l~~~i----~------~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~  102 (314)
                      ++++|+++|++|++.+++++++    +      .++++|+.++++.|..++++++++|++.+++|+|++|++|.++|++|
T Consensus         1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y   80 (156)
T PF05978_consen    1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY   80 (156)
T ss_pred             CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5789999999999999888776    2      24678999999999999999999999999999999999999999999


Q ss_pred             HHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          103 VAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       103 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      .+++++++.+.++++.++.|+|++++|++++.|+++++          ++++|++..+++|...+.+.++|+++...+.+
T Consensus        81 ~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s----------~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen   81 IASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS----------TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC----------CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987          45899999999999999999999999988876


Q ss_pred             CC
Q 021342          183 DD  184 (314)
Q Consensus       183 ~~  184 (314)
                      +.
T Consensus       151 ~~  152 (156)
T PF05978_consen  151 GQ  152 (156)
T ss_pred             CC
Confidence            54

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.81  E-value=9.3e-18  Score=158.37  Aligned_cols=227  Identities=11%  Similarity=-0.000  Sum_probs=152.2

Q ss_pred             hhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhc
Q 021342           52 TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWV  130 (314)
Q Consensus        52 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~  130 (314)
                      ++.+.++.......++......+++++.++++||+|||++++.+.+.+.+..+.. +.++++.+++.|++.|++.+..++
T Consensus        48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  127 (394)
T PRK10213         48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWA  127 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHH
Confidence            3333333333344567788888999999999999999999999999887755543 678899999999999999999988


Q ss_pred             cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 021342          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (314)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (314)
                      ....++.++.          ++++|++++++++...++|..+||.+++.+.+..     +|++.+++ ..++.++..+..
T Consensus       128 ~~~~~i~~~~----------~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-----gw~~~f~~-~~~l~~~~~l~~  191 (394)
T PRK10213        128 MSASLTMRLV----------PPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-----GWRNVFNA-AAVMGVLCIFWI  191 (394)
T ss_pred             HHHHHHHHHc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CHHHHHHH-HHHHHHHHHHHH
Confidence            8888888876          6789999999999999999999999999887654     58765443 333333333222


Q ss_pred             -HhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhH
Q 021342          211 -CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGG  288 (314)
Q Consensus       211 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~  288 (314)
                       ..+||+++++  +      ...+       +..+.+++|+++......+.........+..++..+. ...++....|+
T Consensus       192 ~~~~p~~~~~~--~------~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~  256 (394)
T PRK10213        192 IKSLPSLPGEP--S------HQKQ-------NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTL  256 (394)
T ss_pred             HHHCCCCCccc--c------cchh-------HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence             2345432111  0      0011       1234667777766543322222111112333333332 34567788899


Q ss_pred             HHHHHhhHhHHHHHHHHHHHHh
Q 021342          289 AMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       289 ~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      .+..+|+.+.++.. ..+|+.|
T Consensus       257 ~~~~~~~~~iig~~-~~~~l~~  277 (394)
T PRK10213        257 VLLSFGIASFVGTS-LSSFILK  277 (394)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHh
Confidence            99999998888764 5565554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.81  E-value=1.3e-17  Score=158.45  Aligned_cols=234  Identities=12%  Similarity=0.046  Sum_probs=157.8

Q ss_pred             hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhh
Q 021342           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (314)
Q Consensus        50 l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~  128 (314)
                      +.++.+.+........+++++++++++++.++++||+|||+++..+.+.+.+..+.. ..++++.++++|+++|++.+..
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~  121 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFI  121 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            444555555556667889999999999999999999999999999998887766554 6789999999999999998865


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                      .+....++.|..          ++++|+++++++.....+|..+||++++.+.++.     +|++. |++..++.+++.+
T Consensus       122 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-----gw~~~-f~~~~~~~~i~~~  185 (413)
T PRK15403        122 ATVGYVTVQEAF----------GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-----HWKVL-FAIIAVMGLIAFV  185 (413)
T ss_pred             HHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHH-HHHHHHHHHHHHH
Confidence            554455555554          5688999999999999999999999998887553     58755 4444555555544


Q ss_pred             H-HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccccc-ccccchh
Q 021342          209 L-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP-ALGVSGV  286 (314)
Q Consensus       209 l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~-~lg~~~i  286 (314)
                      . .+.+||++++++++         .+.++..++..+.++||+++..............-+....|..+... .++..+.
T Consensus       186 ~~~~~lp~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~  256 (413)
T PRK15403        186 GLLLAMPETVKRGAVP---------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQF  256 (413)
T ss_pred             HHHHhCCCCccccCCC---------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHH
Confidence            3 34577754322111         01122234455678899888766554443333222333445443322 4567777


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHH
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWL  309 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~  309 (314)
                      |+.....+....+++. +.+|+.
T Consensus       257 gl~~~~~~~~~~i~~~-l~~~~~  278 (413)
T PRK15403        257 AWTQVPVFGAVIVANA-IVARFV  278 (413)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHh
Confidence            7776666666555444 344444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.81  E-value=8.7e-18  Score=159.48  Aligned_cols=272  Identities=11%  Similarity=0.050  Sum_probs=167.7

Q ss_pred             cccchhhhhHHHHHHHHHHHhhHh----hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH
Q 021342           26 YTRDVHILSCAFLLIFLAYGAAQN----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (314)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~----l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~  101 (314)
                      .++.++.+.+++++.+........    ++++.+.+........++.++++++++++.+++.||+|||+++..+.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            344445555544443333333332    2333333332333446788889999999999999999999999999999987


Q ss_pred             HHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHH
Q 021342          102 FVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (314)
Q Consensus       102 ~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i  180 (314)
                      ..+.. +.+|++.+++.|++.|++.+..+++...++++++          |+++|+++++++.....+|.++|+++++.+
T Consensus        86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWF----------PAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654 7789999999999999999999888888888886          568999999999999999999999998887


Q ss_pred             HcCCC-CCCCCchhHHHHHHHHHHH-HHHHHHHhccCCccccc---ccccc--------c--c--cccc--chHHHHHHH
Q 021342          181 LKDDK-GGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDKGE---KETAD--------A--S--VNFY--SYLVSLSKS  241 (314)
Q Consensus       181 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~---~~~~~--------~--~--~~~~--~~~~~~~~~  241 (314)
                      ..... ....+||+.++ +..+.++ +..+..+++||++++++   +++++        .  +  ..++  +......++
T Consensus       156 ~~~~~~~~~~gwr~~f~-~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (412)
T TIGR02332       156 LALDGLMALKGWQWLFL-LEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRS  234 (412)
T ss_pred             HhCCCCCCccchhHHHH-HHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Confidence            64311 11236976544 4444443 34445567787653211   00000        0  0  0000  000001122


Q ss_pred             HHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccccc--ccccchhhHHHHHHhhHhHHHHHHHHHHHH
Q 021342          242 ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAIFLVELLLRWL  309 (314)
Q Consensus       242 ~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~--~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~  309 (314)
                      ..+.++++..+.....++...........++|.++...  .....+.+...+..+++..++.+ ..+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l~  303 (412)
T TIGR02332       235 MLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMI-WWSRHS  303 (412)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHH-HHHHHh
Confidence            23334456665555544444444444556777655432  23345667777777777776554 444444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.80  E-value=1.5e-17  Score=156.41  Aligned_cols=228  Identities=13%  Similarity=0.039  Sum_probs=151.5

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      .+++|.+...-....+.....+++++++.+++.||+|||+++..+.+.+.+..+.. +.+|++.+++.|+++|++.+..+
T Consensus        36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  115 (390)
T PRK03545         36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW  115 (390)
T ss_pred             HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            34444333333344567778889999999999999999999999998887766554 77899999999999999999888


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (314)
                      +...++++++.          |+++|++++|++.....+|..+||.+++.+.+..     +||+. |++..++.++..++
T Consensus       116 ~~~~~~i~~~~----------~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-----gw~~~-f~~~~~~~~l~~~~  179 (390)
T PRK03545        116 SITASLAIRVA----------PAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-----GWRTT-FLAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHhC----------ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-----cHHHH-HHHHHHHHHHHHHH
Confidence            88778888876          6789999999999999999999999988876543     58765 44444444443333


Q ss_pred             -HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHH-HHhHHHhhhhccccccccc-cccccchh
Q 021342          210 -MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA-YSGLQQAFVWAEFTKEIVT-PALGVSGV  286 (314)
Q Consensus       210 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~-~~g~~~~f~~~~~~~~~~~-~~lg~~~i  286 (314)
                       ...+||++++  ++         .+    .++..+.+++|+++......+ ......+ ...+.+.++.. ...+....
T Consensus       180 ~~~~~~~~~~~--~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~  243 (390)
T PRK03545        180 LIKLLPLLPSE--HS---------GS----LKSLPLLFRRPALVSLYLLTVVVVTAHFT-AYSYIEPFVQQVAGLSENFA  243 (390)
T ss_pred             HHHhCCCCCCC--Cc---------ch----HHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccHH
Confidence             3345543221  10         01    122234667776654332222 1111111 12333433322 23556778


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      +..+..+++.+.+++. ..+|+.|-
T Consensus       244 ~~~~~~~~~~~~~g~~-~~g~l~dr  267 (390)
T PRK03545        244 TLLLLLFGGAGIIGSV-LFSRLGNR  267 (390)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHhhc
Confidence            8888888888888776 55666654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.5e-18  Score=166.69  Aligned_cols=272  Identities=18%  Similarity=0.114  Sum_probs=187.2

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhh--------hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNL--------ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGT   96 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l--------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~   96 (314)
                      +++.++.++.+.+..++.++.+..++        .++.+...+.-+...+++|++|+++.++++.+.||+...+.|....
T Consensus        39 ~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~  118 (495)
T KOG2533|consen   39 LRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG  118 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence            56667777777777777776655533        3333333444445578999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHH
Q 021342           97 TGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL  175 (314)
Q Consensus        97 ~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~l  175 (314)
                      +++.++.+. ...+|.+.+++.|++.|+.+|..||+...+++.++          .++|||..+|++++..++|.++|++
T Consensus       119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy----------~~~e~g~r~~~~~a~~~~g~i~ggl  188 (495)
T KOG2533|consen  119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWY----------GKSERGLRMGIWYASASLGNIFGGL  188 (495)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhc----------ChhhhhhhHHHHHHhcchhhHHHHH
Confidence            999888755 46789999999999999999999999999999998          4589999999999999999999999


Q ss_pred             HHHHHHcCCC-CCCCCchhHHHHHHHHHHHH-HHHHHHhccCCccc---ccccc-------ccccccccchHHHHHHHHH
Q 021342          176 ITLAVLKDDK-GGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDK---GEKET-------ADASVNFYSYLVSLSKSIT  243 (314)
Q Consensus       176 i~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~  243 (314)
                      +++.+.+..+ .+..+|||. |++..++++. +++.++++|+.+.+   .++++       .|.+.....+.+.+.++..
T Consensus       189 iA~g~~~~~~~~~~~gW~~~-FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~  267 (495)
T KOG2533|consen  189 IAYGVFKLNGSGGLAGWRWL-FIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFK  267 (495)
T ss_pred             HHHHhhhhcCCCCcCCceee-hhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHH
Confidence            9999766333 234679754 6666666554 55666778864321   11111       0111111000002345667


Q ss_pred             HhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccc---cchhhHHHHHHhhHhHHHHHHHHHH
Q 021342          244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALG---VSGVGGAMAVYGAFDAIFLVELLLR  307 (314)
Q Consensus       244 ~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg---~~~ig~~~~~~G~~~~i~~~~~l~~  307 (314)
                      +.++||+++......+.+.........+.|-+... ..+.   ....+....+.|+...+....+.-|
T Consensus       268 ~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr  335 (495)
T KOG2533|consen  268 EALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR  335 (495)
T ss_pred             HHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence            78999999999888877776665555555533333 1122   2233345556666666655544444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.78  E-value=2.4e-17  Score=157.43  Aligned_cols=233  Identities=10%  Similarity=0.002  Sum_probs=153.2

Q ss_pred             hhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhc
Q 021342           52 TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWV  130 (314)
Q Consensus        52 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~  130 (314)
                      ++.+.+........++..+.+++++++++++.||+|||+++.++.+...+..+.. +.++++.++..|++.|++.|..++
T Consensus        51 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~  130 (434)
T PRK11663         51 ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWP  130 (434)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccch
Confidence            3344333333334567778889999999999999999999999999887766654 678899999999999999998888


Q ss_pred             cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHH-HHHHH
Q 021342          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT-LGTIL  209 (314)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  209 (314)
                      ....++.+++          ++++|+++++++.....+|..+||++++.+....     +|++.+++. .++.+ .+++.
T Consensus       131 ~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----gw~~~f~~~-~i~~~~~~~~~  194 (434)
T PRK11663        131 VCAKLLTAWY----------SRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-----GWRYGMMIA-GIIAIVVGLFL  194 (434)
T ss_pred             HHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----cHHHHHHHH-HHHHHHHHHHH
Confidence            8777888876          5689999999999999999999999988887653     587654433 33333 33344


Q ss_pred             HHhccCCcccc---cc-----ccccccc---cccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc
Q 021342          210 MCFLRKEEDKG---EK-----ETADASV---NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT  278 (314)
Q Consensus       210 ~~~l~~~~~~~---~~-----~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~  278 (314)
                      .++++|+++.+   +.     +.++...   +++.+.++.++.  ..+++++.+.+...++...........++|.+...
T Consensus       195 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  272 (434)
T PRK11663        195 CWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTK--YVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSE  272 (434)
T ss_pred             HHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567643211   00     0000000   011122222221  25678877776554444444444444566655422


Q ss_pred             -cccccchhhHHHHHHhhHhHHHHH
Q 021342          279 -PALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       279 -~~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                       ..++..+.+..+.++++...++.+
T Consensus       273 ~~g~s~~~a~~~~~~~~~~~~~g~~  297 (434)
T PRK11663        273 TLGVDLVTANSAVSMFELGGFIGAL  297 (434)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence             356667778777877777776554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.77  E-value=1.6e-16  Score=148.03  Aligned_cols=234  Identities=13%  Similarity=0.018  Sum_probs=153.5

Q ss_pred             hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhh
Q 021342           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (314)
Q Consensus        50 l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~  128 (314)
                      ++++.+.+........++..+...+++++.+++.||+|||+++..+.+...+..+.. ..++.+.+++.|++.|++.+..
T Consensus        31 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  110 (385)
T TIGR00710        31 IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAG  110 (385)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHH
Confidence            344444444333444677788889999999999999999999999998877655553 6688889999999999999998


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH-
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-  207 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-  207 (314)
                      .+...+++.|+.          ++++|++.+++......+|..+|+.+++.+.+..     +|++.++ +..++.++.. 
T Consensus       111 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-----~~~~~~~-~~~~~~~~~~~  174 (385)
T TIGR00710       111 SVISQALVRDIY----------PGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-----SWHAIFA-FLSLAGILLSA  174 (385)
T ss_pred             HHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CHHHHHH-HHHHHHHHHHH
Confidence            888888888876          6689999999999999999999999998877653     4765433 3333333333 


Q ss_pred             HHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchh
Q 021342          208 ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGV  286 (314)
Q Consensus       208 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~i  286 (314)
                      +..+++||++++++++       +   .++..++..+.+++|+.+....................|..+. ....+..+.
T Consensus       175 ~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  244 (385)
T TIGR00710       175 LIFFILPETLPYEARI-------Q---ISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVF  244 (385)
T ss_pred             HHHHhCCCCCCCcccC-------C---HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHH
Confidence            3334456543322111       0   1112233345667777766543322211111112223343332 234667888


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      |......++...+++. ..+++.|
T Consensus       245 g~~~~~~~~~~~~~~~-~~g~l~~  267 (385)
T TIGR00710       245 GLLFALNIIAMIFGGF-LNGRFIK  267 (385)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHH
Confidence            8888888887777655 4555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.77  E-value=4.3e-17  Score=153.74  Aligned_cols=232  Identities=10%  Similarity=0.010  Sum_probs=156.5

Q ss_pred             hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhh
Q 021342           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (314)
Q Consensus        49 ~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~  127 (314)
                      .++++++.+........++.++++++++++.+++.||+|||+++..+...+++..+.. +.++++.++.+|+++|++.+.
T Consensus        34 ~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~  113 (393)
T PRK09705         34 QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGI  113 (393)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHH
Confidence            4455555554444556788889999999999999999999999999999998877764 789999999999999999999


Q ss_pred             hhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH
Q 021342          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (314)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (314)
                      .++....++.++.           +++|+++++++.+....|..+|+.++..+..+.    .+||+.+++ +.+..++..
T Consensus       114 ~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----~~w~~~~~~-~~~~~~~~~  177 (393)
T PRK09705        114 IQAVMPSVIKRRF-----------QQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----ETWYQTLAW-WALPAVVAL  177 (393)
T ss_pred             HhhhhhHHHHHHc-----------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHH-HHHHHHHHH
Confidence            8888777766653           478999999999999999999999988776543    158765333 222223333


Q ss_pred             HHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhh
Q 021342          208 ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVG  287 (314)
Q Consensus       208 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig  287 (314)
                      +..+...+.+++++++       ++.+.       .+.+++++.+.+...+............+.|.++....++..+.|
T Consensus       178 ~~~~~~~~~~~~~~~~-------~~~~~-------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag  243 (393)
T PRK09705        178 FAWWWQSAREVASSHK-------TTTTP-------VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSG  243 (393)
T ss_pred             HHHHHHhcCCCccccC-------CCcCC-------cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh
Confidence            3222222211111100       00000       123456665554444433333333444556655555566678889


Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          288 GAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       288 ~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      ..+.++++.++++++ ..+++.|-
T Consensus       244 ~~~~~~~i~~i~g~~-~~g~l~~r  266 (393)
T PRK09705        244 SLLALMTLGQAAGAL-LMPAMARH  266 (393)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHhh
Confidence            999999999888776 45555553

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.77  E-value=1.9e-16  Score=148.25  Aligned_cols=232  Identities=8%  Similarity=-0.034  Sum_probs=148.8

Q ss_pred             hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhh-chhhhHHHHHHHHhhhhhhh
Q 021342           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL-FPSWYTMVPASLYLGFAASI  127 (314)
Q Consensus        49 ~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~-~~~~~~l~~~r~l~G~g~~~  127 (314)
                      .++++++.+...-....+.+++.+++++++.|+++||+|||+++..+............ .+++..++.+|++.|+|.+.
T Consensus        16 ~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~   95 (368)
T TIGR00903        16 LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF   95 (368)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH
Confidence            34455554433323336788899999999999999999999987666554444333222 36899999999999999986


Q ss_pred             hhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-H
Q 021342          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-G  206 (314)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~  206 (314)
                      .. .....++++.          |+++|+++++++.....+|..++++++..+..+.     +||+. |++..+++++ .
T Consensus        96 ~~-~~~~~~~~~~----------~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-----gWr~~-f~~~~~l~~~~~  158 (368)
T TIGR00903        96 LL-NAFAPAASQI----------REERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-----GLQLL-IIPIAAVAAAGI  158 (368)
T ss_pred             HH-HHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHH-HHHHHHHHHHHH
Confidence            44 3344456654          6799999999999999999999999998887653     59765 4443444444 3


Q ss_pred             HHHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchh
Q 021342          207 TILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGV  286 (314)
Q Consensus       207 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~i  286 (314)
                      ++..+++||+++.+++.   .   +.+   +..++..+.+++|..+.+....+...........+.|.++....++.+ .
T Consensus       159 ~~~~~~lp~~p~~~~~~---~---~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~  228 (368)
T TIGR00903       159 ILVLAALPALPFQAAEG---F---GFK---DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-A  228 (368)
T ss_pred             HHHHHHcCCCCCCCCCC---c---chH---HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-H
Confidence            34456688754322111   0   001   112334457888888877655544443343445688877754344443 4


Q ss_pred             hHHHHHHhhHhHHHHHHHHHH
Q 021342          287 GGAMAVYGAFDAIFLVELLLR  307 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~  307 (314)
                      +....+..+...++.....-|
T Consensus       229 ~~~~~l~~~~g~~g~~~~~d~  249 (368)
T TIGR00903       229 GDAVALAILAGLIGVAVIPDR  249 (368)
T ss_pred             HHHHHHHHHHHHHHHHHhhHH
Confidence            555556556666655433333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.76  E-value=3.3e-16  Score=147.99  Aligned_cols=235  Identities=11%  Similarity=0.008  Sum_probs=150.8

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      .++.+.+........+...+.+.+++++.|+++||+|||+++.++.+.+.+..+.. ..++++.++..|++.|++.+..+
T Consensus        40 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  119 (406)
T PRK15402         40 VEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIG  119 (406)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHH
Confidence            34444444444445678888899999999999999999999999998877665553 66788889999999999999887


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (314)
                      +...+++.|..          ++++|++.+++.......|..+||.+++.+.++.     +|++.+ ++..++.++..+.
T Consensus       120 ~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-----~w~~~~-~~~~~~~~~~~~~  183 (406)
T PRK15402        120 AVGYAAIQESF----------EEADAIKITALMANVALLAPLLGPLVGAALIHVL-----PWRGMF-VLFAALAALSFFG  183 (406)
T ss_pred             HHHHHHHHHHh----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CccHHH-HHHHHHHHHHHHH
Confidence            77777777765          5678889899988888889999999988876643     587654 4444444443333


Q ss_pred             -HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhh
Q 021342          210 -MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVG  287 (314)
Q Consensus       210 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig  287 (314)
                       .+.+||++++++++         .+.++..++..+.+++|+.+...............+....|.++. ...++..+.|
T Consensus       184 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g  254 (406)
T PRK15402        184 LWRAMPETAGRVGEK---------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYG  254 (406)
T ss_pred             HHHhCCCCCcccccc---------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH
Confidence             34456543221111         011122233345678888776655444333332223333443322 2345566677


Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          288 GAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       288 ~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      +.....++...++.. ..+++.|.
T Consensus       255 ~~~~~~~~~~~~g~~-~~g~l~~r  277 (406)
T PRK15402        255 LLQVPVFGALIAGNL-TLARLTSR  277 (406)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHh
Confidence            766666655555443 55666543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.76  E-value=1.9e-16  Score=149.32  Aligned_cols=226  Identities=13%  Similarity=0.057  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      ...+...+...+++++.++++||+|||+++..+.+...+..+. .+.++++.+++.|++.|++.+..++....++.++. 
T Consensus        54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-  132 (406)
T PRK11551         54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV-  132 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc-
Confidence            3456777888889999999999999999999998877665544 36788999999999999999988888888888876 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCCcccc
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDKG  220 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~  220 (314)
                               ++++|+++++++......|..++++++..+.+..     +|++.++ +..++.++ ..+..+++||+++..
T Consensus       133 ---------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~  197 (406)
T PRK11551        133 ---------GPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA-----AWRHIFY-VGGVGPLLLVPLLMRWLPESRAFA  197 (406)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----CHHHHHH-HHHHHHHHHHHHHHHhCCCChhHH
Confidence                     5689999999999999999999999987665432     4765444 33333333 333345577764322


Q ss_pred             ccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHH
Q 021342          221 EKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIF  300 (314)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~  300 (314)
                      +++.++   +++++..   +...+..+.++...+...++...........++|.+.....++....|....++++.+.++
T Consensus       198 ~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~  271 (406)
T PRK11551        198 QAAGAG---KQRAPVL---RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALG  271 (406)
T ss_pred             hccCcc---hhhhhhH---HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHH
Confidence            111000   0111111   1111111122222222222222222223344455554445566778888888888888876


Q ss_pred             HHHHHHHHHhh
Q 021342          301 LVELLLRWLYF  311 (314)
Q Consensus       301 ~~~~l~~~~~~  311 (314)
                      ++ ..+++.|.
T Consensus       272 ~~-~~g~l~dr  281 (406)
T PRK11551        272 SL-LIGALMDR  281 (406)
T ss_pred             HH-HHHHHHHH
Confidence            65 55665543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.6e-16  Score=147.34  Aligned_cols=254  Identities=13%  Similarity=0.034  Sum_probs=179.3

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhH----hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      +.++.++.+.++.+.+-+.-....    .+.++++.+....-...+++-.+.+++.++...+.+|+.||++++..+.++.
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi   89 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI   89 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            555666677777665554433333    4444555544444445678888999999999999999999999999999998


Q ss_pred             HHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHH
Q 021342          101 LFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (314)
Q Consensus       101 ~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~  179 (314)
                      +..+. .+++|++.++++|++.|++.|..|+...++.++..          ||++|++++++......++.++|..++.+
T Consensus        90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv----------pp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV----------PPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            87765 48999999999999999999999999999999886          78999999999999999999999999999


Q ss_pred             HHcCCCCCCCCchhHHHHHHHHHHHHHHH-HHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHH-
Q 021342          180 VLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL-  257 (314)
Q Consensus       180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~-  257 (314)
                      +-+..     +||..++.+ ..++++..+ +...+|+++..+++         +.+    .++..+.+|+|+.+..... 
T Consensus       160 ig~~~-----GWR~~F~~i-a~l~ll~~~~~~~~lP~~~~~~~~---------~~~----~~~~~~~l~~p~v~~~l~~t  220 (394)
T COG2814         160 LGQLF-----GWRATFLAI-AVLALLALLLLWKLLPPSEISGSL---------PGP----LRTLLRLLRRPGVLLGLLAT  220 (394)
T ss_pred             HHHHh-----hHHHHHHHH-HHHHHHHHHHHHHhCCCccCCCCC---------Ccc----hhHHHHHhcCchHHHHHHHH
Confidence            97765     598764444 555555444 34557711111111         112    2233457888888775533 


Q ss_pred             -HHHHhHHHhhhhcccccccc-ccccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          258 -FAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       258 -~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                       ..+.|.+..|.  +...... ...+..+.+++++.+||+...+++. +-+|+.|
T Consensus       221 ~l~~~g~F~~ft--Yi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~d  272 (394)
T COG2814         221 FLFMTGHFALYT--YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNL-LGGRLAD  272 (394)
T ss_pred             HHHHcchhhhHH--hHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHH-HHhhhcc
Confidence             23334333322  2222222 1246688899999999999999887 6666655

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.76  E-value=1.6e-16  Score=150.75  Aligned_cols=243  Identities=9%  Similarity=0.023  Sum_probs=148.5

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      +++.+.++.......++..+...+++++.|+++||+|||+++.++.+...+..+.. +.++.+.++++|++.|++.+..+
T Consensus        45 ~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~  124 (426)
T PRK12307         45 KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY  124 (426)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHH
Confidence            34445444333445677888999999999999999999999999999887766654 67889999999999999999888


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (314)
                      +....++++++          ++++|+++.+++.....+|.++++.+...+.+..     +|++.+++ .....++...+
T Consensus       125 ~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-----~w~~~f~i-~~~~~~~~~~~  188 (426)
T PRK12307        125 ACASTYAVESW----------PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-----GWRAAFFV-GLLPVLLVIYI  188 (426)
T ss_pred             HHHHHHHHHhC----------CHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-----CHHHHHHH-HHHHHHHHHHH
Confidence            88888888876          6789999999999999999999998877765443     58765443 22221221111


Q ss_pred             HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHh---hhhccccccccccccccchh
Q 021342          210 MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQA---FVWAEFTKEIVTPALGVSGV  286 (314)
Q Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~---f~~~~~~~~~~~~~lg~~~i  286 (314)
                      ....||+++.++++.++..++++..+++..++..+.+++++.......++......+   ...+.+|.+......+....
T Consensus       189 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  268 (426)
T PRK12307        189 RARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVV  268 (426)
T ss_pred             HHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            122333321111100000000011111111122334556655433322211111111   12345565444444556777


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      +..+.+.++.+.+++. ..+++.|
T Consensus       269 ~~~~~~~~~~~~~g~~-~~g~l~d  291 (426)
T PRK12307        269 SNLMTAAAFGTVLGNI-VWGLCAD  291 (426)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHH
Confidence            8888888888877665 4455544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.76  E-value=2.4e-16  Score=147.92  Aligned_cols=251  Identities=10%  Similarity=-0.021  Sum_probs=159.5

Q ss_pred             cchhhhhHHHHHHHHHHHhhH----hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHH
Q 021342           28 RDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (314)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~----~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~  103 (314)
                      +++..+.++.+..........    .++++.+.+........++..+++.++++++|++.||+|||+++..+.+...+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            344444444443333332322    3344444443333445688889999999999999999999999999998887765


Q ss_pred             Hhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          104 AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       104 ~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      +.. +.++++.+++.|++.|++.+...+....++.++.          ++++|++.++++.....+|..+||.+++.+.+
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII----------KPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------ChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            554 7789999999999999999988777666677665          56789999999999999999999999888765


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHH-HHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 021342          183 DDKGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  261 (314)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~  261 (314)
                      ..     +||+.++ +..++.++.. ...+.+||+++++++           +.++.    .+.+++++.+......+..
T Consensus       153 ~~-----gwr~~f~-~~~~~~~~~~~~~~~~lp~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~~  211 (382)
T PRK10091        153 EF-----SWRYTFL-LIAVFNIAVLASIYFWVPDIRDEAKG-----------GLREQ----FHFLRSPAPWLIFAATMFG  211 (382)
T ss_pred             hc-----cHHHHHH-HHHHHHHHHHHHHHHhCCCCCccccc-----------CHHHH----HHHhcChHHHHHHHHHHHH
Confidence            43     5876544 3344333333 333456664321110           11111    2345666655544332221


Q ss_pred             hHHHhhhhcccccccc-ccccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          262 GLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       262 g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      ......+.+.++.++. ...++..+.++...+.++..++++. ..+|+.|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~  260 (382)
T PRK10091        212 NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNL-LSGRLSG  260 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhH-HHheecc
Confidence            1111112233343333 2456678888888899988888765 5555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.76  E-value=1.9e-16  Score=146.38  Aligned_cols=234  Identities=12%  Similarity=0.006  Sum_probs=145.3

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      .++++.+...-....++.++.+++++++.|+++||+|||+++.++.+.+.+..+.. +.++++.++++|++.|++.+..+
T Consensus        30 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  109 (377)
T TIGR00890        30 GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAY  109 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            33444333333344678889999999999999999999999999998887765554 77899999999999999999877


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-HHH
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTI  208 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  208 (314)
                      +....++.++.           +++|+++.+++.....+|..+++.+...+.+..     +||+. |++..+..++ .++
T Consensus       110 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~-f~~~~~~~~~~~~~  172 (377)
T TIGR00890       110 GIALNTAVKWF-----------PDKRGLASGIIIGGYGLGSFILSPLITSVINLE-----GVPAA-FIYMGIIFLLVIVL  172 (377)
T ss_pred             HhHHHHHHHHc-----------CcccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-----cHHHH-HHHHHHHHHHHHHH
Confidence            66555555543           468999999999999999877555544444332     58755 4443444443 333


Q ss_pred             HHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhH
Q 021342          209 LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGG  288 (314)
Q Consensus       209 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~  288 (314)
                      ..+++++++++++++.++     .++.+   ++..+.+++++.+.+...++...+......+.++.+.....++.++.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (377)
T TIGR00890       173 GAFLIGYPPGQLIKTNIE-----VSVKD---YTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVL  244 (377)
T ss_pred             HHHheecCchhccccCcc-----cchhh---hhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            445565544322111100     00111   1223456777776655444443333333333333222223345666778


Q ss_pred             HHHHHhhHhHHHHHHHHHHHHh
Q 021342          289 AMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       289 ~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      ...++++.+.+++. ..+++.|
T Consensus       245 ~~~~~~~~~~~~~~-~~g~l~d  265 (377)
T TIGR00890       245 AVSISSIFNGGGRP-FLGALSD  265 (377)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHH
Confidence            88888888877665 4455554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.75  E-value=3.2e-16  Score=152.24  Aligned_cols=154  Identities=16%  Similarity=0.117  Sum_probs=116.5

Q ss_pred             hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhh
Q 021342           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASI  127 (314)
Q Consensus        49 ~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~  127 (314)
                      .+.+++|.+.....+..+.+.+.++++.++.|+++||+|||++++++.+.+.+..+. .+.+|++.++++|+++|+|.+.
T Consensus        31 ~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~  110 (495)
T PRK14995         31 TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAM  110 (495)
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            334455554444445567777888899999999999999999999999998876655 4789999999999999999998


Q ss_pred             hhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH
Q 021342          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (314)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (314)
                      ..+.....+.+..         +++++|++++|++.....+|..+||.+++.+.++.     +|||.+++ ...+.++..
T Consensus       111 ~~~~~~~~l~~~~---------~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-----gwr~~f~i-~~~~~~~~~  175 (495)
T PRK14995        111 IVPATLAGIRATF---------TEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-----YWGSVFLI-NVPIVLVVM  175 (495)
T ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChHHHHHH-HHHHHHHHH
Confidence            7766555554442         25689999999999999999999999999987764     59876544 344444433


Q ss_pred             H-HHHhccCCc
Q 021342          208 I-LMCFLRKEE  217 (314)
Q Consensus       208 ~-l~~~l~~~~  217 (314)
                      + ..+++|+++
T Consensus       176 ~l~~~~l~~~~  186 (495)
T PRK14995        176 GLTARYVPRQA  186 (495)
T ss_pred             HHHHHhCCCCC
Confidence            3 335566643

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.75  E-value=8.3e-17  Score=149.24  Aligned_cols=244  Identities=12%  Similarity=0.043  Sum_probs=159.2

Q ss_pred             hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhh
Q 021342           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (314)
Q Consensus        50 l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~  128 (314)
                      ++++.+.+........++..+...+++++.+.++||+|||+++.++.+.+.+..... +.++++.++++|++.|++.+..
T Consensus        20 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   99 (399)
T TIGR00893        20 LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPF   99 (399)
T ss_pred             HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence            344444443333344677888889999999999999999999999998887665554 6678999999999999999999


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH-
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-  207 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-  207 (314)
                      +++...++.++.          |+++|++.++++.....+|..+|+.+++.+.++.     +|++. |....++.++.. 
T Consensus       100 ~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~  163 (399)
T TIGR00893       100 FPGIILIVASWF----------PASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-----SWQWA-FIIEGVLGIIWGV  163 (399)
T ss_pred             hhHHHHHHHHhC----------CHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-----CchHH-HHHHHHHHHHHHH
Confidence            988888888886          6689999999999999999999999998877654     48654 433344433333 


Q ss_pred             HHHHhccCCcccccc-ccc-cc---cc-----cccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc
Q 021342          208 ILMCFLRKEEDKGEK-ETA-DA---SV-----NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  277 (314)
Q Consensus       208 ~l~~~l~~~~~~~~~-~~~-~~---~~-----~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~  277 (314)
                      +..++++|++++++. +++ +.   +.     +++++..+..++..+.+++|+.+......+............+|.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (399)
T TIGR00893       164 LWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLV  243 (399)
T ss_pred             HhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            333445554322110 000 00   00     000000011122345677888777666555555544455555564432


Q ss_pred             c-cccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          278 T-PALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       278 ~-~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      . ...+..+.++...+.++.+.+++. ..+++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~  276 (399)
T TIGR00893       244 QERGLSILEAGFMASLPGIVGFIGMI-LGGRLSD  276 (399)
T ss_pred             HHhcccHHHhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence            2 234566778888888887777654 4444443

>PRK10133 L-fucose transporter; Provisional

Probab=99.74  E-value=9.5e-16  Score=146.74  Aligned_cols=280  Identities=11%  Similarity=0.068  Sum_probs=168.7

Q ss_pred             CCcccCCccccCccccccchhhhhHHHHHHHHHHHhhHhh----hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhh
Q 021342           11 APLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNL----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVL   86 (314)
Q Consensus        11 ~~l~~~~~~p~n~~~~~~~~~~l~~~~~~~~~~~~~~~~l----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~   86 (314)
                      +.-=.-+|||.+-+..+..+.++.+.++..-........+    +++.+.+........+.+++++.+++++.++++||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~   88 (438)
T PRK10133          9 QSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL   88 (438)
T ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333456677776666777777777666554444443333    334443333333345778889999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHhh----hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHH
Q 021342           87 GSKNALILGTTGYWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF  162 (314)
Q Consensus        87 G~k~~l~~g~~~~~~~~~~~----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~  162 (314)
                      |||+++..+.+.+.+..+..    ..+++..++++|+++|+|.+..+++...++.++.          ++++|++.++++
T Consensus        89 G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~----------~~~~~~~~~s~~  158 (438)
T PRK10133         89 SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLA  158 (438)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------ChhhHHHHHHHH
Confidence            99999999999987765442    4678999999999999999999999888888764          456666679999


Q ss_pred             HHHHhhhhHHHHHHHHHHHc-CCC------------CCC--------CCchhHHHHHHHHHHHHHHHHHHhccCCccccc
Q 021342          163 WGMFASHQFVGNLITLAVLK-DDK------------GGS--------TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGE  221 (314)
Q Consensus       163 ~~~~~~g~~~G~li~~~i~~-~~~------------~~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  221 (314)
                      ...+.+|..+|++++..+.. ...            +.-        .+|+..++.+..+..++..+ ..+.+.|+.+.+
T Consensus       159 ~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~-~~~~~~p~~~~~  237 (438)
T PRK10133        159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL-IMLTKFPALQSD  237 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcc
Confidence            99999999999999876541 100            000        12332222222222222222 222222221111


Q ss_pred             cccccccccccchHHHHHHHHHHhhcChhHHHHHH-HHHHHhHHHhhhhccccccccc--cccccchhhHHHHHHhhHhH
Q 021342          222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDA  298 (314)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p-~~~~~g~~~~f~~~~~~~~~~~--~~lg~~~ig~~~~~~G~~~~  298 (314)
                      +..   + ++..+..+   +..+.+++|++..... .+++.+.+.+ .+++.+.++..  ..++....|+.+..+++..+
T Consensus       238 ~~~---~-~~~~~~~~---~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~  309 (438)
T PRK10133        238 NHS---D-AKQGSFSA---SLSRLARIRHWRWAVLAQFCYVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF  309 (438)
T ss_pred             ccc---c-ccccchhh---hHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Confidence            110   0 01111112   2234567777655433 2333333332 23345544322  35668888999999999888


Q ss_pred             HHHHHHHHHHHh
Q 021342          299 IFLVELLLRWLY  310 (314)
Q Consensus       299 i~~~~~l~~~~~  310 (314)
                      ++.. ..+|+.+
T Consensus       310 vG~~-~~g~l~~  320 (438)
T PRK10133        310 IGRF-TGTWLIS  320 (438)
T ss_pred             HHHH-HHHHHHH
Confidence            8765 4555554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.74  E-value=1e-17  Score=155.51  Aligned_cols=200  Identities=15%  Similarity=0.137  Sum_probs=152.7

Q ss_pred             CCCCCCCCccc-CCccccCccccccchhhhhHHHHHHHHHHHhhH----hhhhhhcCCC-ChhHHHHHHHHHHHHHHHhh
Q 021342            5 DSRDEEAPLVA-DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTEG-NLGTISLGILYTSFTCFSLV   78 (314)
Q Consensus         5 ~~~~~~~~l~~-~~~~p~n~~~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~i~~~~-~~g~~~~~~~~~~~~~~~~~   78 (314)
                      +..++.+|+.. |+.+..+++..++.++++.+..++.+.-.....    .+++-.|.++ ..|.+ ..++..++.+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll-~~vf~v~~~i~sPl   87 (493)
T KOG1330|consen    9 TTTSSGNPLIELEGLDHLSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLL-QTVFIVVFMIASPL   87 (493)
T ss_pred             CCccCCCcccccccccccccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccch-hHHHHHHHHHHHHH
Confidence            44557777777 333446887888777777776666655443333    3344445443 34444 46888999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhh
Q 021342           79 ASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGS  157 (314)
Q Consensus        79 ~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~  157 (314)
                      .|.+.||+-||+++.+|..+|.+.+++. +...++++.++|.+.|+|++...+...++++|.+          ++++|++
T Consensus        88 ~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f----------~~~~Rs~  157 (493)
T KOG1330|consen   88 FGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF----------PDDKRSR  157 (493)
T ss_pred             HHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC----------cchhhhH
Confidence            9999999999999999999998877764 6788999999999999999999999999999987          6789999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc
Q 021342          158 FNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK  219 (314)
Q Consensus       158 ~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  219 (314)
                      .+++|+.+...|..+|.+.+..+.+...    +|||-+....+...+++++.+++++||++.
T Consensus       158 ~~~ify~~ipvGsglG~vvgs~va~~~~----~Wr~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  158 VLGIFYFAIPVGSGLGYVVGSVVASLTF----WWRWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             HHHHhhhhcccccceeEEeeeeeccCcc----ceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence            9999999999999999999888766542    387654444333344566677889998763

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.74  E-value=4.8e-16  Score=144.93  Aligned_cols=235  Identities=13%  Similarity=0.072  Sum_probs=155.7

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      .++.|.+........++..+...+++++.++++||+|||+++..+.++..+..... +.++.+.+++.|++.|++.+..+
T Consensus        18 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   97 (377)
T PRK11102         18 AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAAS   97 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            34444443333344577788889999999999999999999999998887766554 66788889999999999999888


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH-H
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-I  208 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  208 (314)
                      +...+++.+..          ++++|++.+++......+|..+||++++.+.+..     +|++. |++...+.++.. +
T Consensus        98 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~  161 (377)
T PRK11102         98 VVINALMRDMF----------PKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-----SWHAI-FWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ChHHH-HHHHHHHHHHHHHH
Confidence            88888888875          5689999999999999999999999988887643     47654 444444444433 3


Q ss_pred             HHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhh
Q 021342          209 LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVG  287 (314)
Q Consensus       209 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig  287 (314)
                      ..+++||+.++++++        +.+.++..++..+.+++++.+....................|..+.. ..++..+.|
T Consensus       162 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g  233 (377)
T PRK11102        162 VFFFIPETLPKERRQ--------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFG  233 (377)
T ss_pred             HHHhCCccCcccccC--------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHH
Confidence            345667654322211        11122233444456777776654433322222122222333333332 356678888


Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHh
Q 021342          288 GAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       288 ~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      +.+.+.++...+++. ..+|+.|
T Consensus       234 ~~~~~~~~~~~~~~~-~~g~l~~  255 (377)
T PRK11102        234 YYFALNIVFLFVMTI-INSRFVR  255 (377)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHH
Confidence            888888888777654 4555554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.74  E-value=8.1e-16  Score=148.71  Aligned_cols=229  Identities=14%  Similarity=0.042  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .+...+++.+++++.|+++||+|||+++..+.+.+.+..+.. +.++...++++|++.|++.+...+ ...+++++.   
T Consensus        77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~---  152 (476)
T PLN00028         77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVS-CQYWMSTMF---  152 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhc---
Confidence            456667888899999999999999999999988887666543 667888888999999999886433 334566665   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC---C-CCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD---D-KGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK  219 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  219 (314)
                             ++++||+++|+.....++|..+|+.+...+...   . .....+||+.++ +..++.++..++.++++++.++
T Consensus       153 -------~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~-i~g~l~l~~~l~~~~~~~~~p~  224 (476)
T PLN00028        153 -------NGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF-VPGLLHIIMGILVLTLGQDLPD  224 (476)
T ss_pred             -------ChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH-HHHHHHHHHHHHHHHHcCcCCC
Confidence                   668999999999888788888877665444321   1 001136876644 4444444433333444332221


Q ss_pred             cc-cccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhhHHHHHHhhHh
Q 021342          220 GE-KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFD  297 (314)
Q Consensus       220 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~~~~G~~~  297 (314)
                      .+ ++.++....++++..+   ...+.+++++.+.+...++...........+.|.++.. ..+.....+....++++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~  301 (476)
T PLN00028        225 GNYRELKKSGTMPKDSFSK---VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMN  301 (476)
T ss_pred             CchhhHHhcCccccccHHH---HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            11 0000000001112222   22345777776665544332211111223445554433 3566778888888899888


Q ss_pred             HHHHHHHHHHHH
Q 021342          298 AIFLVELLLRWL  309 (314)
Q Consensus       298 ~i~~~~~l~~~~  309 (314)
                      .++++ ..+++.
T Consensus       302 ~ig~~-~~G~ls  312 (476)
T PLN00028        302 LFARP-AGGYLS  312 (476)
T ss_pred             HHHHh-hhHHHH
Confidence            88775 444444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.74  E-value=7.4e-16  Score=144.30  Aligned_cols=177  Identities=13%  Similarity=0.034  Sum_probs=125.7

Q ss_pred             ccchhhhhHHHHHHHHHHHhhHhh----hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHH
Q 021342           27 TRDVHILSCAFLLIFLAYGAAQNL----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (314)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~l----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~  102 (314)
                      ++.+..+.++.+...........+    +++.+.+........++..+...+++++.|.++||+|||++++++.+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   90 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG   90 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344444445444444433333333    3333433333334467888899999999999999999999999999888766


Q ss_pred             HHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       103 ~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                      .+.. +.++++.++..|++.|++.+..++...+++.+..          ++++|+++++++......|.++|+.+++.+.
T Consensus        91 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW----------PKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554 6788999999999999999999888888888876          6689999999999999999999999988876


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          182 KDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                      ...+   .+|++. |++..+..++..+....+||++
T Consensus       161 ~~~~---~~w~~~-f~~~~~~~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       161 PVWG---DGWRAL-FFISILPIIFALWLRKNIPEAE  192 (405)
T ss_pred             HhcC---ccHHHH-HHHHHHHHHHHHHHHHhCCCCh
Confidence            5432   247654 3333333334444445567654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.73  E-value=5.5e-16  Score=145.37  Aligned_cols=254  Identities=16%  Similarity=0.161  Sum_probs=160.1

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhh----hhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLE----TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~----~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      +++|++..+.++.++.-.++.....+.    ++.+.+........+...+...+++++.++++||+|||+++..+.+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777666555544443333    3333332223334677778888999999999999999999999998887


Q ss_pred             HHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHH
Q 021342          101 LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (314)
Q Consensus       101 ~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~  179 (314)
                      +..+.. +.++++.++++|++.|++.+..++.....+.+..          ++++|+++++++.....+|..+||.+++.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG----------TSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            655553 6789999999999999999988776544455443          56789999999999999999999999887


Q ss_pred             HHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHH
Q 021342          180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA  259 (314)
Q Consensus       180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~  259 (314)
                      +....      ++...|... ... .+.+..++.+.++++++++       +.++.+       +.+++|..+......+
T Consensus       153 l~~~~------~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~  210 (381)
T PRK03633        153 VSTEL------MSVLPWVTG-LVL-AAILPLLFTRILNQQAENH-------DSTSIW-------PMLKLRQARLGVNGCI  210 (381)
T ss_pred             ccccc------cchHHHHHH-HHH-HHHHHHHHhcccCCCCCCC-------CCCCHH-------HHHHhcchHHHHHHHH
Confidence            65432      112222221 111 1122222222221111100       111111       2345565555444444


Q ss_pred             HHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          260 YSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       260 ~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      ..++..+..++.+|.+..........+|....++++..+++++ ..+|+.|-
T Consensus       211 ~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr  261 (381)
T PRK03633        211 ISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQW-PIGRLADR  261 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHH
Confidence            4444445555666755545556677888888888888888776 46776653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.73  E-value=2.3e-16  Score=144.86  Aligned_cols=239  Identities=14%  Similarity=0.115  Sum_probs=146.9

Q ss_pred             hhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhc
Q 021342           52 TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWV  130 (314)
Q Consensus        52 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~  130 (314)
                      ++.+.+...-....++..+...+++++.|+++||+|||++++++.++..+.... .+.++.+.++++|++.|++.+..++
T Consensus        25 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  104 (352)
T PF07690_consen   25 EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSP  104 (352)
T ss_dssp             CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccc
Confidence            333433333334456777888999999999999999999999999988776333 3446666899999999999999999


Q ss_pred             cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH-
Q 021342          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-  209 (314)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  209 (314)
                      +...++.++.          ++++|++++++.....++|.++||++++.+.+..     +|++. |++..++.++..++ 
T Consensus       105 ~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-----~~~~~-~~~~~~~~~~~~il~  168 (352)
T PF07690_consen  105 ASNALIADWF----------PPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-----GWRWA-FLISAILSLIAAILF  168 (352)
T ss_dssp             HHHHHHHHCC----------CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-----HHCCH-HHHHHHHHHHHHHHH
T ss_pred             cccccccccc----------hhhhhhhccccccchhhhhhhcccchhhhhhhcc-----ccccc-cccccchhhhhhhhH
Confidence            9998999886          5689999999999999999999999999886443     47655 44444544444443 


Q ss_pred             HHhccCCccccccccccccccccchHHHHHHH-HHHhhcChhHHHHHHHHHHHhHHHhhhhccccccc-cccccc-cchh
Q 021342          210 MCFLRKEEDKGEKETADASVNFYSYLVSLSKS-ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI-VTPALG-VSGV  286 (314)
Q Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~-~~~~lg-~~~i  286 (314)
                      .+++++++++++++.++.+.   +..++.+++ .....+++.++.+....+..++.........|.+. ....++ ..+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  245 (352)
T PF07690_consen  169 ILFLPEPPPPRERESPKESE---SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQA  245 (352)
T ss_dssp             HCCC---STTTT--SSTTTT-----HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHH
T ss_pred             hhhhhhcccccccccccccc---cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHH
Confidence            24454443332221111100   001111111 11233444444233333333333333444444331 122344 5678


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      +..+.+.++...+++. ..+++.|
T Consensus       246 ~~~~~~~~~~~~~~~~-~~~~l~~  268 (352)
T PF07690_consen  246 GLLFSIFGIVGIIGSL-LAGRLSD  268 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHH
Confidence            8888888888877643 5555554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.72  E-value=2.2e-15  Score=138.83  Aligned_cols=227  Identities=14%  Similarity=0.029  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhch-----hhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP-----SWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~-----~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      ..++..+...+++++.|+++||+|||++++.+.+...+..+. .+.+     +.+.+++.|++.|++.+..+++..+++.
T Consensus        39 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  118 (365)
T TIGR00900        39 AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLP  118 (365)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677788888999999999999999999998776554433 2334     8888999999999999999988888888


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                      |+.          ++++|++.++++.....+|.++||++++.+.+..     +|++.++ +..+..+++.++.+.+++++
T Consensus       119 ~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-----g~~~~~~-~~~~~~~~~~~~~~~~~~~~  182 (365)
T TIGR00900       119 DLV----------PEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-----GIKWAIW-VDAVGFAISALLIVSVRIPE  182 (365)
T ss_pred             hcC----------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHH-HHHHHHHHHHHHHHhccccc
Confidence            886          5689999999999999999999999998887654     4765543 33333344444444444332


Q ss_pred             cccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHH-Hhhhhccccccccc-cccccchhhHHHHHHhh
Q 021342          218 DKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQ-QAFVWAEFTKEIVT-PALGVSGVGGAMAVYGA  295 (314)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~-~~f~~~~~~~~~~~-~~lg~~~ig~~~~~~G~  295 (314)
                      ++++++++ .   +++..++..+.....+++|..+.+....+..... .+.....+|.+... ..++..+.|......++
T Consensus       183 ~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (365)
T TIGR00900       183 LAASEIQA-L---SNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGL  258 (365)
T ss_pred             CCCccccc-c---chhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHH
Confidence            22111100 0   0011111112223456777776665544433332 22222444433222 24567788888888888


Q ss_pred             HhHHHHHHHHHHHHhh
Q 021342          296 FDAIFLVELLLRWLYF  311 (314)
Q Consensus       296 ~~~i~~~~~l~~~~~~  311 (314)
                      ...+++. ..+++.|.
T Consensus       259 ~~~~~~~-~~~~l~~~  273 (365)
T TIGR00900       259 GALLGAL-LLGLLGRY  273 (365)
T ss_pred             HHHHHHH-HHHHHHHH
Confidence            8877655 45566554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.72  E-value=1.4e-15  Score=141.00  Aligned_cols=261  Identities=11%  Similarity=0.046  Sum_probs=154.1

Q ss_pred             hhhhhHHHHHHHHHHHhhHh-----hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHH
Q 021342           30 VHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA  104 (314)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~-----l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~  104 (314)
                      +....++++..+..+.....     ++++.+.+........++..+.+.++++++++++||+|||+.++++.+...+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            34455555555555443332     3444554444444456788889999999999999999999999999988877655


Q ss_pred             hh-hch-hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          105 AN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       105 ~~-~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      .. +.+ +++.+++.|++.|++.+. ++....+++++.          ++++|+++++++....++|..+|+.++..+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFF----------PKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhc----------CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            54 667 888999999999999765 444556677765          56899999999998888888888877765544


Q ss_pred             CC----C-CCCCCchhHHHHHHHHHHH-HHHHHHHhccCCccccccccccccc-cccchHHHHHHHHHHhhcChhHHHHH
Q 021342          183 DD----K-GGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDKGEKETADASV-NFYSYLVSLSKSITTLLADVRMLLII  255 (314)
Q Consensus       183 ~~----~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~lll~  255 (314)
                      ..    + ....+|++.+++...++.. +.++..++.+|.+++++++++.... .+....++..++..+.+++++.+.+.
T Consensus       152 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (366)
T TIGR00886       152 SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILA  231 (366)
T ss_pred             HHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHH
Confidence            21    0 1123687765444333333 3333344455432221111100000 00000011122344567777766654


Q ss_pred             HHHHH-HhHHHhhhhccccccccc-cccccchhhHHHHHHhhHhHHHHH
Q 021342          256 PLFAY-SGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       256 p~~~~-~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                      ..++. .+...+ ..+.+|.+... ..++..+.|....+.++.+.++..
T Consensus       232 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T TIGR00886       232 LLYSVTFGSFLG-VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARP  279 (366)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhh
Confidence            33332 222222 23444533322 234567778777777777776553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.72  E-value=3.9e-16  Score=144.42  Aligned_cols=244  Identities=11%  Similarity=-0.006  Sum_probs=153.1

Q ss_pred             hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhh
Q 021342           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (314)
Q Consensus        50 l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~  128 (314)
                      ++++.+.+........++..+...+++++.++++||+|||++++++.++..+..+.. +.++.+.+++.|++.|++.+..
T Consensus        21 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  100 (379)
T TIGR00881        21 LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMG  100 (379)
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence            334444443333344678888889999999999999999999999998887666554 6688899999999999999999


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHH-HHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-H
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN-LITLAVLKDDKGGSTSGTTLLFIVFLGVITL-G  206 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~-li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~  206 (314)
                      ++...+++.++.          ++++|++.+++......+|..+|+ +++..+....     +|++. |++..++.++ +
T Consensus       101 ~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~  164 (379)
T TIGR00881       101 WPPCGRTVTKWF----------SRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-----SWHWV-FIVPGIIAIIVS  164 (379)
T ss_pred             CCchHHHHHHhc----------CHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-----CchhH-HHHHHHHHHHHH
Confidence            998888888886          668999999999999999999999 5666554432     57665 4333333333 3


Q ss_pred             HHHHHhccCCccccc---ccc--ccc---cccccchHHHHH-HHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc
Q 021342          207 TILMCFLRKEEDKGE---KET--ADA---SVNFYSYLVSLS-KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  277 (314)
Q Consensus       207 ~~l~~~l~~~~~~~~---~~~--~~~---~~~~~~~~~~~~-~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~  277 (314)
                      ++..++++|+++.++   +++  .+.   ..+++++.++.. ....+.+++|..+.+....+...........+.|.+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (379)
T TIGR00881       165 LICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLT  244 (379)
T ss_pred             HHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445665432211   000  000   000000000011 11234567777766554444333333333444554432


Q ss_pred             c-cccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          278 T-PALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       278 ~-~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      . ..++..+.+..+.++++.+.+++. ..+++.+
T Consensus       245 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~  277 (379)
T TIGR00881       245 QEKGFSKEKASWAFTLYELGGLVGTL-LAGWLSD  277 (379)
T ss_pred             HHhCCCHHHHHHHHHHHHHHcchhHH-HHHHHHH
Confidence            2 345567788888888887777654 3444433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.72  E-value=2.8e-15  Score=141.12  Aligned_cols=181  Identities=12%  Similarity=0.088  Sum_probs=119.0

Q ss_pred             CCccccCccccccchhhhhHHHHHHHHHHHhhH----hhhhhhcCCCChh-----HHHHHHHHHHHHHHHhhHHHHHHhh
Q 021342           16 DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLG-----TISLGILYTSFTCFSLVASLVVRVL   86 (314)
Q Consensus        16 ~~~~p~n~~~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~i~~~~~~g-----~~~~~~~~~~~~~~~~~~~~l~~~~   86 (314)
                      |.|+|.||++   ++..+.++.++...++....    .+.++.+.+....     ....++.++...+++++.|+++||+
T Consensus         5 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~   81 (408)
T PRK09874          5 ENDTPINWKR---NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK   81 (408)
T ss_pred             cCCCCCcHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3467778744   44444444444444433222    2233333332211     2235677788889999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHH
Q 021342           87 GSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGM  165 (314)
Q Consensus        87 G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  165 (314)
                      |||++++.+.+.+.+..+.. ..++++.+++.|++.|++.+. .+....++.+..          ++++|+++++++...
T Consensus        82 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  150 (408)
T PRK09874         82 GRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQV----------PRNKSGWALGTLSTG  150 (408)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhc----------CHhhhhHHHHHHHHH
Confidence            99999999988876655543 567888999999999998664 344444455543          568899999999999


Q ss_pred             HhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH-HHHhccCC
Q 021342          166 FASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKE  216 (314)
Q Consensus       166 ~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~  216 (314)
                      ...|..+||.+++.+.+..     +|++. |++..++.++..+ ..++++|+
T Consensus       151 ~~~g~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        151 GVSGALLGPLAGGLLADSY-----GLRPV-FFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----CHHHH-HHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999998876543     47654 4444444444433 33456654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.72  E-value=3.1e-15  Score=142.75  Aligned_cols=223  Identities=11%  Similarity=0.042  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhh--------hHHHHHHHHhhhhhhhhhccchhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSW--------YTMVPASLYLGFAASIIWVGEGTY  135 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~--------~~l~~~r~l~G~g~~~~~~~~~~~  135 (314)
                      .+..|++..++++++|+++||+|||+++.++.+.+.+..+.. +.+++        ..+++.|+++|++.|..++...++
T Consensus        69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~  148 (432)
T PRK10406         69 FAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATY  148 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Confidence            345566666999999999999999999999999998777664 55654        368899999999999999999999


Q ss_pred             HhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       136 i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                      ++|+.          |+++||++.++.......|..+++++...+.....   ....+||..++ +..+..++...+...
T Consensus       149 i~e~~----------p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~-i~~~~~ll~~~~~~~  217 (432)
T PRK10406        149 MSEVA----------VEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFA-LGAVLAVVALWLRRQ  217 (432)
T ss_pred             HHHhC----------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHH-HHHHHHHHHHHHHhc
Confidence            99986          67899999998887778888888776554432110   01236876543 333333333332233


Q ss_pred             ccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHH-hHHHhhhhccccccccc-cccccchhhHHH
Q 021342          213 LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS-GLQQAFVWAEFTKEIVT-PALGVSGVGGAM  290 (314)
Q Consensus       213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~-g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~  290 (314)
                      +||+++.++++     .++..+    ++   +.+++++.+.+....... .........++|.++.. ..+...+.+..+
T Consensus       218 ~~e~~~~~~~~-----~~~~~~----~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~  285 (432)
T PRK10406        218 LDETSQQETRA-----LKEAGS----LK---GLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIM  285 (432)
T ss_pred             CCCCchHHHhh-----hccccc----HH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            45543211110     001111    22   244566655544332221 22122233456655432 345566777777


Q ss_pred             HHHhhHhHHHHHHHHHHHHhh
Q 021342          291 AVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       291 ~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      .+.++..++++. ..+++.|-
T Consensus       286 ~i~~~~~~i~~~-~~G~l~Dr  305 (432)
T PRK10406        286 TAALFVFMLIQP-LIGALSDK  305 (432)
T ss_pred             HHHHHHHHHHHH-HHHHHHHH
Confidence            777777666655 44666654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.71  E-value=4.1e-15  Score=139.73  Aligned_cols=233  Identities=11%  Similarity=0.023  Sum_probs=149.9

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      .++.+.+........++..+...+++++.|.++||+|||+.+..+.+.+.+..... ..++...+++.|++.|++.+..+
T Consensus        30 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  109 (392)
T PRK10473         30 AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCY  109 (392)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHH
Confidence            34444333333344567777888999999999999999999999998887655554 56788888899999999999888


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH-H
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-I  208 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  208 (314)
                      +...+++.+..          ++++|++..++.......|..+||++++.+.+..     +|++. |++..++.++.. +
T Consensus       110 ~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-----g~~~~-~~~~~~~~~i~~~~  173 (392)
T PRK10473        110 VVAFAILRDTL----------DDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-----PWQSL-FYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----ChHHH-HHHHHHHHHHHHHH
Confidence            88777888775          5689999999999999999999999988776543     47654 334444444333 3


Q ss_pred             HHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhh
Q 021342          209 LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVG  287 (314)
Q Consensus       209 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig  287 (314)
                      ..+++||++++++++        +.+..   ++..+.+++++.+....................|..+. ...++..+.|
T Consensus       174 ~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  242 (392)
T PRK10473        174 SLFILKETRPARAPA--------ASSKP---RENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYA  242 (392)
T ss_pred             HHHHcCCCCCcccCC--------ccchH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHH
Confidence            345566654322111        01111   12224566766554332222111111112223332222 2345667788


Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          288 GAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       288 ~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      ..+...++...+++. ..+++.|-
T Consensus       243 ~~~~~~~~~~i~~~~-~~~~l~~r  265 (392)
T PRK10473        243 IIMALTAGVSMTVSF-STPFALGI  265 (392)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHh
Confidence            888888988888764 55666553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.71  E-value=3.9e-16  Score=150.42  Aligned_cols=232  Identities=9%  Similarity=-0.125  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh------hchhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN------LFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~------~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ...+.++..++++++++|+++||+|||+++.++.+..++.....      ..++.+.+++.|++.|++.+..+++...++
T Consensus        68 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i  147 (467)
T PRK09556         68 MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTI  147 (467)
T ss_pred             HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            33567889999999999999999999999988887765543321      247899999999999999999999888888


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccC
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRK  215 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~  215 (314)
                      +++.          |+++||+++|++.....+|.++|+++...+.....  ..+|+.. |.+..++.++ +++..+++++
T Consensus       148 ~~~~----------~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~--~~~~~~~-f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        148 TRWT----------PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF--DGHVIGM-FIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             HHHc----------CccceeeeEEeeecccchhhhHHHHHHHHHHHhhc--cCcchhH-HHHHHHHHHHHHHHHHHhCCC
Confidence            8886          67899999999999999999999988766554321  1136543 4433333333 3333444554


Q ss_pred             Cccc-c--cccc--ccc---cc----cccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccc
Q 021342          216 EEDK-G--EKET--ADA---SV----NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALG  282 (314)
Q Consensus       216 ~~~~-~--~~~~--~~~---~~----~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg  282 (314)
                      ++++ +  +.++  ++.   +.    +++.+.++.+++  +.+++|.++.+....+...........+.|.++.. ..+.
T Consensus       215 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s  292 (467)
T PRK09556        215 SPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVE--YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFS  292 (467)
T ss_pred             ChhhcCCCChhhcccCccchhhhccccccCcHHHHHHH--HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            3221 1  0000  000   00    001111111111  26788888776654443333222234556655432 3455


Q ss_pred             cchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          283 VSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       283 ~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      ..+.+..+.+..+...+++. ..+++.+
T Consensus       293 ~~~a~~~~~~~~~~~~ig~~-~~G~lsD  319 (467)
T PRK09556        293 KEDAINTFTLFEIGALVGSL-LWGWLSD  319 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            67777777777777666554 5555544

>TIGR00897 2A0118 polyol permease family

Probab=99.71  E-value=4e-15  Score=140.64  Aligned_cols=262  Identities=10%  Similarity=0.051  Sum_probs=151.7

Q ss_pred             ccccchhhhhHHHHHHHHHHHh----hHhhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGA----AQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~----~~~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      .+++++....++.++...+...    ...+.++.+.+........+...+++.+++++++++.||+|||+++..+.+.+.
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWC   89 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            3455555555554433333221    112333444333333334567778889999999999999999999999998876


Q ss_pred             HHHHhh----h-chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhh-HHHH
Q 021342          101 LFVAAN----L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ-FVGN  174 (314)
Q Consensus       101 ~~~~~~----~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~~G~  174 (314)
                      +..+..    . .++++.++..|++.|++.+...+....++.+..          ++++|++++|++......|. .+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~~g~~~~g~  159 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT----------KQDNLSSAVGWFWAVYSIGIGVFGS  159 (402)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654322    2 357788888999999998876655555555554          56899999999999999997 6899


Q ss_pred             HHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHH
Q 021342          175 LITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL  253 (314)
Q Consensus       175 li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll  253 (314)
                      ++++.+....     +|+...|.. .....++.++. ++.++++++++++ +      +++..+..+.....+++|+.+.
T Consensus       160 ~~~~~l~~~~-----g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~  226 (402)
T TIGR00897       160 YYSSYAIPAF-----GEMNTLWSA-LAFVLTGGVIALFSNKDIFTPQHMQ-T------REKFSELGKAATILFTNPNVLL  226 (402)
T ss_pred             HHHHhccccc-----chHHHHHHH-HHHHHHHHHHHHhccCCCCCccccc-C------CcchhhHHHHHHHHHcChhHHH
Confidence            9887765443     343332222 22222333333 3344432211111 0      0011111122234678888776


Q ss_pred             HHHHHHHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          254 IIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       254 l~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      .....+.......-...+.|.+.....++..+.+...+..++.+.+++. ..+++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~d  282 (402)
T TIGR00897       227 GGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNV-IFGIVGD  282 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            5544433322222223345533333345566677777777777777665 4456554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.71  E-value=8.1e-16  Score=147.96  Aligned_cols=220  Identities=9%  Similarity=-0.091  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h--chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      .+.++.++.++++++++++||+|||+++..+.++..+..+.. +  ..+.+.+++.|++.|++.+..+++...++.++. 
T Consensus        82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~-  160 (465)
T TIGR00894        82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWA-  160 (465)
T ss_pred             HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcC-
Confidence            567778888999999999999999999999998877655442 2  245778889999999999999999888898886 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCccc-
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDK-  219 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~-  219 (314)
                               |+++|+++++++....++|.++|+++++.+....    .+|++.+++ ..+.+++..++. .+.+|+++. 
T Consensus       161 ---------~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~----~gw~~~f~i-~~~~~~~~~~~~~~~~~~~p~~~  226 (465)
T TIGR00894       161 ---------PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW----GGWPMIFYV-FGIVGCAWSLLWFVFPADDPSIH  226 (465)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCeehhh-hhHHHHHHHHHHHHHhcCCcccC
Confidence                     6689999999999999999999999988876542    148765443 344444333333 344443221 


Q ss_pred             cccccccc-------cc-cccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhhHHH
Q 021342          220 GEKETADA-------SV-NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAM  290 (314)
Q Consensus       220 ~~~~~~~~-------~~-~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~  290 (314)
                      ++.++++.       +. +++.+.+.   ...+.++++.++......+...........++|.++.. ..++..+.|+..
T Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~  303 (465)
T TIGR00894       227 PCISKFEKKYINSSLQGQKGSTRQSL---PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLS  303 (465)
T ss_pred             CCCCHHHHHHHHhhcccccCCCCCCC---CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHH
Confidence            11100000       00 00000011   12346777777776665555444444555667766533 346677788877


Q ss_pred             HHHhhHhHHHHH
Q 021342          291 AVYGAFDAIFLV  302 (314)
Q Consensus       291 ~~~G~~~~i~~~  302 (314)
                      ++..+...++..
T Consensus       304 ~~~~~~~~i~~~  315 (465)
T TIGR00894       304 SLPYLFAWLCSI  315 (465)
T ss_pred             HHHHHHHHHHHH
Confidence            777776666554

>TIGR00895 2A0115 benzoate transport

Probab=99.71  E-value=2.4e-15  Score=140.25  Aligned_cols=139  Identities=13%  Similarity=0.116  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      ..++..+...+++++.++++||+|||+++..+.++..+..+. .+.++++.+++.|++.|++.+..++...+++.+..  
T Consensus        57 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  134 (398)
T TIGR00895        57 LFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA--  134 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHc--
Confidence            345666778888999999999999999999998877665554 36688888999999999999999888888888876  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                              ++++|++.++++.....+|..+|+.+++.+.+..     +|++.+++..+...+...+...++||+.
T Consensus       135 --------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       135 --------PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-----GWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             --------CHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-----cceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence                    5689999999999999999999999988876553     4765433332233333444455677653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.71  E-value=4.2e-15  Score=143.19  Aligned_cols=151  Identities=8%  Similarity=0.021  Sum_probs=116.2

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      .++.+.+........+...++..++.++.++++||+|||++++.+.+.+.+..... ..+++..++++|++.|++.+...
T Consensus        29 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~  108 (485)
T TIGR00711        29 AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLI  108 (485)
T ss_pred             HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHH
Confidence            34444443333344677788889999999999999999999999999888766654 67899999999999999999998


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH-
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-  208 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  208 (314)
                      +...+++.++.          |+++|+++++++.....+|..+||.+++.+.++.     +|++.+++. ..+.++..+ 
T Consensus       109 ~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-----~w~~~f~~~-~~~~~~~~~~  172 (485)
T TIGR00711       109 PLSFSTLLNIY----------PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-----HWRWIFLIN-VPIGIIVVVV  172 (485)
T ss_pred             HHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-----Cceehhhhh-hHHHHHHHHH
Confidence            88888888886          6689999999999999999999999998887654     587654443 333333333 


Q ss_pred             HHHhccCCc
Q 021342          209 LMCFLRKEE  217 (314)
Q Consensus       209 l~~~l~~~~  217 (314)
                      ..+++||++
T Consensus       173 ~~~~~~~~~  181 (485)
T TIGR00711       173 AFFILPRDK  181 (485)
T ss_pred             HHHHcCCcc
Confidence            334566543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.70  E-value=9.2e-15  Score=137.46  Aligned_cols=232  Identities=12%  Similarity=-0.004  Sum_probs=140.8

Q ss_pred             hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhh
Q 021342           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (314)
Q Consensus        50 l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~  128 (314)
                      +.++.+.+........++..+.+.+++++.|+++||+|||+++.++.+...+..... ..++...+++.|++.|++.+..
T Consensus        34 i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  113 (394)
T PRK11652         34 MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG  113 (394)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHH
Confidence            334455454444455678888999999999999999999999999988877665554 6678889999999999998876


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHH-HHH
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT-LGT  207 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~  207 (314)
                      .+....+..+..          ++++++++.+.+......+..+||.+++.+.+..     +|++.+++. .+..+ ...
T Consensus       114 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-----g~~~~f~~~-~~~~~~~~~  177 (394)
T PRK11652        114 GVMARTLPRDLY----------EGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-----GWRACYLFL-LLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ChHHHHHHH-HHHHHHHHH
Confidence            555444555543          4578999999998899999999999988876543     587654433 33333 333


Q ss_pred             HHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchh
Q 021342          208 ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGV  286 (314)
Q Consensus       208 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~i  286 (314)
                      +..+++||+++.+++         +++.++.+   .+.+++|+.+......+.............+..+.. ..++..+.
T Consensus       178 ~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  245 (394)
T PRK11652        178 SMARWMPETRPADAR---------RTRVLASY---RTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTV  245 (394)
T ss_pred             HHHHhCCccCccccc---------hhHHHHHH---HHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHH
Confidence            334556664322111         11122222   235566665543322222211122222222322211 23445566


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      |+..++.+....+++. ..+|+.|
T Consensus       246 ~~~~~~~~~~~~~g~~-~~~~l~~  268 (394)
T PRK11652        246 SILFILPIPAAFFGAW-FAGRPNK  268 (394)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHH
Confidence            7766666555555443 4445443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.69  E-value=4.2e-15  Score=144.18  Aligned_cols=142  Identities=13%  Similarity=0.059  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhH--------HHHHHHHhhhhhhhhhccchhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYT--------MVPASLYLGFAASIIWVGEGTY  135 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~--------l~~~r~l~G~g~~~~~~~~~~~  135 (314)
                      .++.++++.+++++.|+++||+|||+++.++.+++++..+.. +.+++.+        +++.|+++|++.|..+++..++
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            477888999999999999999999999999999998877764 7787754        7899999999999999999999


Q ss_pred             HhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       136 i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                      +++++          |+++||+..++......+|..+|+.+...+.....   ....+||+.+++ .....+++.++...
T Consensus       143 ~~e~~----------p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i-~~~~~l~~~~~~~~  211 (490)
T PRK10642        143 VAEYS----------PDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFI-ALPLGIIGLYLRHA  211 (490)
T ss_pred             HHHhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHH-HHHHHHHHHHHHHc
Confidence            99986          67899999999888888888888876654432110   012369866444 33444444444456


Q ss_pred             ccCCc
Q 021342          213 LRKEE  217 (314)
Q Consensus       213 l~~~~  217 (314)
                      +||++
T Consensus       212 ~~esp  216 (490)
T PRK10642        212 LEETP  216 (490)
T ss_pred             CCCCh
Confidence            77754

>PRK03699 putative transporter; Provisional

Probab=99.69  E-value=1.1e-14  Score=137.15  Aligned_cols=257  Identities=13%  Similarity=-0.027  Sum_probs=154.1

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHh----hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQN----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~----l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      +++|-.+...+++++..........    +.++.+.+........+..++++.+++++++++.||+|||+++..+.+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444455544444433333333333    333344333222334567788899999999999999999999999998877


Q ss_pred             HHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHH
Q 021342          101 LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (314)
Q Consensus       101 ~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~  179 (314)
                      +..+.. +.++.+.+++.|++.|++.+..++....++++..          |+++|+++++........|..++|.+.+.
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  153 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVY----------EGKQRGSRLLFTDSFFSMAGMIFPIIAAY  153 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhc----------ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665543 6688889999999999999988877777777765          56789999998888888999999988777


Q ss_pred             HHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHH
Q 021342          180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA  259 (314)
Q Consensus       180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~  259 (314)
                      +....    .+||+.++ +..+..++..++.++.+.|+.++++++     ++++.    .    +...+++.+.+....+
T Consensus       154 l~~~~----~gw~~~f~-~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~----~----~~~~~~~~~~~~~~~~  215 (394)
T PRK03699        154 LLARS----IEWYWVYA-CIGLVYVAIFILTLFSEFPALGKHAPK-----ADKPV----A----KEKWGIGVLFLAIAAL  215 (394)
T ss_pred             HHhcc----ccHHHHHH-HHHHHHHHHHHHHHhcCCccccccCcc-----ccCcc----c----cccCChHHHHHHHHHH
Confidence            65432    25876543 333333333333333332321111110     00000    0    1112344443333332


Q ss_pred             HHhHHHhhhhccccccccc-cccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          260 YSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       260 ~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      .......-..++.|.+... ..++..+.|....++.+..+++.+ +.+++.|
T Consensus       216 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~d  266 (394)
T PRK03699        216 LYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVR  266 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence            2222222334566755533 356677888888888887777654 4555544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.69  E-value=1.1e-14  Score=137.53  Aligned_cols=222  Identities=11%  Similarity=-0.013  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      ...+...+.++++.+++|+++||+|||++++.+.+++.+..+.. +.++.   +..|+++|++.+..+++..+++.++. 
T Consensus        42 ~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~-  117 (393)
T PRK11195         42 LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELL-  117 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            33567778899999999999999999999999999887655443 33443   67899999999999999999999987 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccc
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGE  221 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  221 (314)
                               |+++|++++++.....+.|.++||.+++.+....      |+.. +.+...+.+++.+..+.+||++.+++
T Consensus       118 ---------~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~------~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~~  181 (393)
T PRK11195        118 ---------PGEKLVKANGWMEGSTIAAILLGTVLGGALADPH------AEAA-LAVCALIYLLAALFNLFIPRLGARRP  181 (393)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHhcCCCCccccc
Confidence                     6789999999999999999999999999886531      3332 22223322334444456776543221


Q ss_pred             cccccccccccchHHHHHH-HHHHhhcChhHHHHHHHH-HHHhHHHhhhhcccccccc-ccccccchhhHHHHHHhhHhH
Q 021342          222 KETADASVNFYSYLVSLSK-SITTLLADVRMLLIIPLF-AYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDA  298 (314)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~lll~p~~-~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~~~  298 (314)
                      +.+.    + .....++++ .....+++|......... +.........+ .+|.+.. ....+..+.|+.++..++...
T Consensus       182 ~~~~----~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~s~~~~G~~~~~~~~g~i  255 (393)
T PRK11195        182 GQSW----N-PIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRF-LVLAWAPVALGITLNQPAYLQAVVAIGIA  255 (393)
T ss_pred             ccCC----C-HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence            1100    0 001111111 122345666654433221 11111112211 1121110 124557788999999999888


Q ss_pred             HHHHHHHHHHHhh
Q 021342          299 IFLVELLLRWLYF  311 (314)
Q Consensus       299 i~~~~~l~~~~~~  311 (314)
                      +++. ..+|+.|.
T Consensus       256 ~g~~-~~~~l~~~  267 (393)
T PRK11195        256 VGAG-AAARLVTL  267 (393)
T ss_pred             HHHH-HHHHHhcC
Confidence            8766 55777653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.68  E-value=1.9e-15  Score=144.01  Aligned_cols=140  Identities=15%  Similarity=0.072  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc---hhhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF---PSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      ....++.+++..++++++++++||+|||++++++.+++.+..+.. +.   .+++.+++.|++.|++.+..++....+++
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~  153 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLS  153 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHH
Confidence            344678889999999999999999999999999998876654443 22   23447889999999999999888888888


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHH---HHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT---LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  214 (314)
                      ++.          ++++|+++++++.....+|..+|++++   .....     ..+||+.++ +.....++.++..+++|
T Consensus       154 ~~~----------~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~w~~~f~-~~~~~~~~~~~~~~~l~  217 (481)
T TIGR00879       154 EIA----------PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN-----TLGWRIPLG-LQLIPAGLLFLGLFFLP  217 (481)
T ss_pred             ccC----------ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-----CccHHHHHH-HHHHHHHHHHHHHhcCC
Confidence            876          678999999999999999999999988   33222     236876543 44444455555556777


Q ss_pred             CCc
Q 021342          215 KEE  217 (314)
Q Consensus       215 ~~~  217 (314)
                      |++
T Consensus       218 ~~~  220 (481)
T TIGR00879       218 ESP  220 (481)
T ss_pred             CCh
Confidence            753

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.68  E-value=8.9e-15  Score=140.44  Aligned_cols=229  Identities=10%  Similarity=-0.036  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc----hhhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF----PSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~----~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      ...+...+.+++++++.|+++||+|||++++++.+++.+..+.. +.    .+...+++.|++.|++.+..++.....+.
T Consensus        67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~  146 (452)
T PRK11273         67 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV  146 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            34677888899999999999999999999999998876655443 32    36777888999999999988776666666


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhh-HHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccC
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ-FVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRK  215 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~  215 (314)
                      +++          ++++|+++++++.....+|. ..||+++..+...     .+|++.+++ ..++.++ +++..+++||
T Consensus       147 ~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~gw~~~f~i-~~~~~~~~~~l~~~~~~~  210 (452)
T PRK11273        147 HWW----------SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF-----NDWHAALYM-PAFAAILVALFAFAMMRD  210 (452)
T ss_pred             HhC----------ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----ccHHHHHHH-HHHHHHHHHHHHHHHccC
Confidence            665          56889999999988888886 4566654433322     158765443 3343333 4445566777


Q ss_pred             Ccccc----ccc-cc---cc-cc--cccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-ccccc
Q 021342          216 EEDKG----EKE-TA---DA-SV--NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGV  283 (314)
Q Consensus       216 ~~~~~----~~~-~~---~~-~~--~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~  283 (314)
                      +++..    +++ .+   +. +.  .++.+.++.+++  ..++++..+.+....+...........++|.++.. ..++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~  288 (452)
T PRK11273        211 TPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQ--YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL  288 (452)
T ss_pred             CHhhcCCCChhhhhhccccccccccCCCccHHHHHHH--HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            54321    000 00   00 00  011112222211  35678877765544433333333345567766544 34667


Q ss_pred             chhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          284 SGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       284 ~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      ...+..+.++++...++.. +.+++.+
T Consensus       289 ~~~~~~~~~~~~~~~~g~~-~~G~l~d  314 (452)
T PRK11273        289 DKSSWAYFLYEYAGIPGTL-LCGWMSD  314 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            7788777777777766544 4555553

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.68  E-value=1.1e-14  Score=140.01  Aligned_cols=235  Identities=9%  Similarity=-0.041  Sum_probs=145.4

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHH-HHHHhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVP-ASLYLGFAASII  128 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~-~r~l~G~g~~~~  128 (314)
                      +++.+.+........++.+....++.++.|+++||+|||++++.+.+...+..+.. +.++.+.++. .|++.|++.+..
T Consensus        46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~  125 (455)
T TIGR00892        46 QQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFN  125 (455)
T ss_pred             HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhh
Confidence            34444443333344567777788889999999999999999999988776655543 6677777754 578999999977


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                      ++....++.++.           +++|+++.++......+|..+||.+++.+....     +||+.++ +..++.+++.+
T Consensus       126 ~~~~~~~~~~~~-----------~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-----gwr~~f~-~~~~~~~~~~v  188 (455)
T TIGR00892       126 FQPSLTMLGKYF-----------YRRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-----GWRGSFL-ILGGLLLHCCV  188 (455)
T ss_pred             hhHHHHHHHHHH-----------HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-----ChHHHHH-HHHHHHHHHHH
Confidence            666556666653           378999999999999999999999988876653     5876544 44444444433


Q ss_pred             HHHhc-cCCccc---ccc--ccccc--cccc--cchHHHHHHHH--HHhhcChhHHHHHHHHHHHhHHHhhhhccccccc
Q 021342          209 LMCFL-RKEEDK---GEK--ETADA--SVNF--YSYLVSLSKSI--TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI  276 (314)
Q Consensus       209 l~~~l-~~~~~~---~~~--~~~~~--~~~~--~~~~~~~~~~~--~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~  276 (314)
                      ..+++ +++..+   +++  ++.+.  ..++  ..+..++.++.  .+.+++|+++......+...+.......++|.+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  268 (455)
T TIGR00892       189 CGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYA  268 (455)
T ss_pred             HHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            33333 322110   110  00000  0000  00111112221  2567888777665544444433333334455444


Q ss_pred             cccccccchhhHHHHHHhhHhHHHHH
Q 021342          277 VTPALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       277 ~~~~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                      ....++..+.|+.+.+.|+.+.+++.
T Consensus       269 ~~~g~s~~~~g~~~~~~~~~~~~~~~  294 (455)
T TIGR00892       269 KDKGVDEYEAAFLLSIIGFVDIFARP  294 (455)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44456778888898888888887653

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.67  E-value=3e-14  Score=138.34  Aligned_cols=268  Identities=13%  Similarity=0.063  Sum_probs=158.1

Q ss_pred             cccCccccccchhhhhHHHHHHHHHHHhhHhhhhhhcC-CCChhHHHH-HHHHHHHHHHHhhHHHHHHhh-----chhhH
Q 021342           19 QVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISL-GILYTSFTCFSLVASLVVRVL-----GSKNA   91 (314)
Q Consensus        19 ~p~n~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~-~~~~g~~~~-~~~~~~~~~~~~~~~~l~~~~-----G~k~~   91 (314)
                      +|+||++++|...++.+++..-...+.....+..-..+ +.+...++. +.....+ +++++++|++||+     |||+.
T Consensus         4 ~~l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010          4 QYLRIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             hHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            48899988888777777665554444333322222211 122222322 1222223 6889999999999     99886


Q ss_pred             -HHHHHHHHHHHHHh--hh--chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHH
Q 021342           92 -LILGTTGYWLFVAA--NL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF  166 (314)
Q Consensus        92 -l~~g~~~~~~~~~~--~~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  166 (314)
                       +..+.+...+....  +.  ..+.+.+.+.+++.|++.+...+...++.+++.          +++||+++.++.....
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~----------~~~~rg~~~~i~~~g~  152 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL----------PAEERGAGAAISVLGY  152 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ChhhhHHHHHHHHHHH
Confidence             55666666544333  22  246777888999999999988878778888876          6689999999999999


Q ss_pred             hhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchHHHHHHHHHHhh
Q 021342          167 ASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLL  246 (314)
Q Consensus       167 ~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  246 (314)
                      .+|.++|+.++..+.++.    .+||..++ +..++.++..+..+++||+++.++++  +   +.+++..+.++   +.+
T Consensus       153 ~lG~llg~~l~~~l~~~~----~GWr~~f~-i~a~l~ll~~l~~~~~~e~~~~~~~~--~---~~~~~~~~~l~---~~~  219 (491)
T PRK11010        153 RLAMLVSGGLALWLADRY----LGWQGMYW-LMAALLIPCIIATLLAPEPTDTIPVP--K---TLEQAVVAPLR---DFF  219 (491)
T ss_pred             HHHHHHHHHHHHHHHhcc----cCHHHHHH-HHHHHHHHHHHHHHhcCCCccccccc--c---chhhhHHHHHH---HHH
Confidence            999999999988876532    25876544 44445555555555677764321110  0   00111122233   345


Q ss_pred             cChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          247 ADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       247 ~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      ++++.+......+...+...+...+.+.++. ...++.+++|+.....|....+......+++.+
T Consensus       220 ~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~d  284 (491)
T PRK11010        220 GRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQ  284 (491)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5565554443333333444444455554433 245667888887765664333333334444443

>PRK11043 putative transporter; Provisional

Probab=99.67  E-value=4.5e-14  Score=133.11  Aligned_cols=222  Identities=10%  Similarity=-0.006  Sum_probs=138.1

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      +++.+.+........++..+.+.++++++++++||+|||+++..+.+...+.... .+.++++.+++.|++.|++.+...
T Consensus        33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~  112 (401)
T PRK11043         33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAA  112 (401)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHH
Confidence            3444443333334467888889999999999999999999999998877665544 366888899999999999988766


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (314)
                      +...+++.+..          +++++++..+..+....++..+||++++.+....     +|++.++ +..++.++..+.
T Consensus       113 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-----g~~~~~~-~~~~~~~~~~~~  176 (401)
T PRK11043        113 VIWQALVIDRY----------PAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-----GWQAIFA-TLFAITLLLILP  176 (401)
T ss_pred             HHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHH-HHHHHHHHHHHH
Confidence            65555566554          5577888888888888999999999998887653     5865443 334444444444


Q ss_pred             HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhHH
Q 021342          210 MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGA  289 (314)
Q Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~  289 (314)
                      .++++|++++++++          +.++   +..+.+++++.+.....+.........+....|.......++..+.|+.
T Consensus       177 ~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~  243 (401)
T PRK11043        177 TLRLKPSKKARKQS----------QDAL---TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLS  243 (401)
T ss_pred             HHHcCCCCCccccc----------hHHH---HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHH
Confidence            44555433211110          0111   2234566666554332222221111112334443333334556677777


Q ss_pred             HHHHhhHhHHHH
Q 021342          290 MAVYGAFDAIFL  301 (314)
Q Consensus       290 ~~~~G~~~~i~~  301 (314)
                      ++..++...++.
T Consensus       244 ~~~~~~~~~~g~  255 (401)
T PRK11043        244 YVPQTIAFLVGG  255 (401)
T ss_pred             HHHHHHHHHHHH
Confidence            666666555544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.66  E-value=5.6e-15  Score=147.27  Aligned_cols=236  Identities=15%  Similarity=0.039  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hch----------------------------------
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP----------------------------------  109 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~----------------------------------  109 (314)
                      .+...++++++.++.+.+.||+|||+.+.+|.+++++..+.+ +.+                                  
T Consensus        74 ~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~  153 (633)
T TIGR00805        74 NGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQAL  153 (633)
T ss_pred             eehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCc
Confidence            568888999999999999999999999999998887655433 211                                  


Q ss_pred             -----------------hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHH
Q 021342          110 -----------------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV  172 (314)
Q Consensus       110 -----------------~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~  172 (314)
                                       .+..++++|+++|+|.++.++...+|++|+.          ++++|+++++++.....+|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~----------~~~~~~~~~~i~~~~~~iG~~l  223 (633)
T TIGR00805       154 RPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA----------KSKNSPLYIGILESIAVFGPAF  223 (633)
T ss_pred             cccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC----------CccccHHHHHHHHHHHHhhhHH
Confidence                             2446778999999999999999999999986          6789999999999999999999


Q ss_pred             HHHHHHHHHcCCCC-----------CCCCchh-----HHHHHHHHHHHHHHHHHHhccCCcccc----c-ccc-ccc-cc
Q 021342          173 GNLITLAVLKDDKG-----------GSTSGTT-----LLFIVFLGVITLGTILMCFLRKEEDKG----E-KET-ADA-SV  229 (314)
Q Consensus       173 G~li~~~i~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~----~-~~~-~~~-~~  229 (314)
                      |+++++.+.+...+           ...+|||     ..|++..++.++..+.++++|++.+++    + +.. ++. ..
T Consensus       224 G~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~  303 (633)
T TIGR00805       224 GYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEK  303 (633)
T ss_pred             HHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccc
Confidence            99999888753210           0112332     223333444444333445555532211    0 000 000 00


Q ss_pred             --cc-----cchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhhHHHHHHhhHhHHHH
Q 021342          230 --NF-----YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAIFL  301 (314)
Q Consensus       230 --~~-----~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~~~~G~~~~i~~  301 (314)
                        ++     ....++..+...+++++|.++......+...........++|+++.. ..+..++.|+.++..++...+..
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG  383 (633)
T TIGR00805       304 SEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLG  383 (633)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHH
Confidence              00     01122223445568899988777655444433333445567766642 45667788887777666444434


Q ss_pred             HHHHHHHHh
Q 021342          302 VELLLRWLY  310 (314)
Q Consensus       302 ~~~l~~~~~  310 (314)
                      ..+-++++|
T Consensus       384 ~~l~G~l~~  392 (633)
T TIGR00805       384 YLIGGFIMK  392 (633)
T ss_pred             Hhhhhheee
Confidence            445555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.66  E-value=4.6e-14  Score=133.48  Aligned_cols=214  Identities=12%  Similarity=0.036  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .++..+...+.++++|+++||+|||++++.+.+...+..+.. ..++++.+++.|++.|++.+..+++..+++.+..   
T Consensus        52 ~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~---  128 (400)
T PRK11646         52 LGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLI---  128 (400)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            344455556667889999999999999999999887766654 5678888899999999999988887777777765   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHH-HHHHHhccCCcccccc
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG-TILMCFLRKEEDKGEK  222 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~  222 (314)
                             ++++|++++++.....++|..+||.+++.+. +.     +|++.+++ ..+..++. ++..+++||++.+++ 
T Consensus       129 -------~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-----g~~~~f~~-~~~~~~~~~i~~~~~~~~~~~~~~-  193 (400)
T PRK11646        129 -------RPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-----DFRLVCAT-GAVLFVLAAAFNAWLLPAYKLSTV-  193 (400)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-----hHHHHHHH-HHHHHHHHHHHHHHhCCccccccc-
Confidence                   6689999999999999999999999998887 32     47655443 33333333 333344554321110 


Q ss_pred             ccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHHHH
Q 021342          223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                               +++.++.+   .+.+++|+.+.....++............+|.+......+...+|+..++.++.....+.
T Consensus       194 ---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  261 (400)
T PRK11646        194 ---------RTPVREGM---TRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLY  261 (400)
T ss_pred             ---------chhhHHHH---HHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence                     01112222   245677776554332222111111123345543333334567778777777766655443


Q ss_pred             HHHHHHH
Q 021342          303 ELLLRWL  309 (314)
Q Consensus       303 ~~l~~~~  309 (314)
                       .++|+.
T Consensus       262 -~~~~~~  267 (400)
T PRK11646        262 -PIARWS  267 (400)
T ss_pred             -HHHHHH
Confidence             334443

>PRK10054 putative transporter; Provisional

Probab=99.66  E-value=1.7e-14  Score=136.25  Aligned_cols=256  Identities=14%  Similarity=0.061  Sum_probs=153.4

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhh-----hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNL-----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~   99 (314)
                      +.+|++..+.++.++...++......     +++.+.+...-....++..+...+++++.|.++||+|||++++++.+..
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~   83 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAF   83 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Confidence            34566777767666666554443322     2333322222223345666778888899999999999999999999877


Q ss_pred             HHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHH
Q 021342          100 WLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (314)
Q Consensus       100 ~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~  178 (314)
                      .+..+.. +.++++.++..|.+.|.+.+...+...++..|..          ++++|++.+++.....++|..+||.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~lg~~igp~l~~  153 (395)
T PRK10054         84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNL----------SSTSKTKIFSLNYTMLNIGWTVGPPLGT  153 (395)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6654443 6678888888888888877766655555555553          5678999999999999999999999998


Q ss_pred             HHHcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHH
Q 021342          179 AVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL  257 (314)
Q Consensus       179 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~  257 (314)
                      .+.. .     +|+..++ ...++.++++++ .+++++++++++++       ++ +.    ++..+.+++|+.+.....
T Consensus       154 ~l~~-~-----g~~~~f~-~~~~~~~i~~i~~~~~~~~~~~~~~~~-------~~-~~----~~~~~~~~~~~~~~~~~~  214 (395)
T PRK10054        154 LLVM-Q-----SINLPFW-LAAICSAFPLVFIQIWVQRSEKAIATE-------TG-SV----WSPSVLLQDKALLWFTCS  214 (395)
T ss_pred             HHHH-h-----ccCcHHH-HHHHHHHHHHHHHHHHHhccccccccc-------hh-hh----hhhhhhccCceehHHHHH
Confidence            8764 2     4765544 444444444433 34455543221111       00 11    111345677877665544


Q ss_pred             HHHHhHHHhhhhccccccc---cccccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          258 FAYSGLQQAFVWAEFTKEI---VTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       258 ~~~~g~~~~f~~~~~~~~~---~~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      .+...+..+...+.++.+.   .....+...+|..+.+.++.....+ ...+|+.+
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~  269 (395)
T PRK10054        215 GFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLN  269 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeeh-hHHHHHHc
Confidence            3333322222222222221   1223445566667777766555544 35566654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.65  E-value=5.4e-14  Score=132.98  Aligned_cols=151  Identities=14%  Similarity=0.095  Sum_probs=122.0

Q ss_pred             hhhhcCCCCh-hHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhh
Q 021342           51 ETTVNTEGNL-GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (314)
Q Consensus        51 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~  128 (314)
                      ..+.|.+... -....+++..+|++++++++.++||+|.|+++.++.+.+.+..+.. +..+...+.+.|++.|+++|+.
T Consensus        53 ~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~  132 (511)
T TIGR00806        53 LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAAR  132 (511)
T ss_pred             HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444333 3344788999999999999999999999999999999998877775 7778999999999999999999


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhH--HHHHHHHHHHHH
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL--LFIVFLGVITLG  206 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~  206 (314)
                      + +...++..+.          |++||+++.|++.++..+|.++|++++..+. ..     +|++.  +..+..+..+++
T Consensus       133 ~-A~~syI~~Wf----------P~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~-----gWr~y~~Ln~Isl~s~~~a  195 (511)
T TIGR00806       133 I-AYSSYIFSLV----------PPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL-----GWISYSTLNIISLVFMTFS  195 (511)
T ss_pred             H-HHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-----CchhHHHHHHHHHHHHHHH
Confidence            9 8888888887          7799999999999999999999999988844 32     47653  223344555677


Q ss_pred             HHHHHhccCCcc
Q 021342          207 TILMCFLRKEED  218 (314)
Q Consensus       207 ~~l~~~l~~~~~  218 (314)
                      .++.+++|.+++
T Consensus       196 ~~~a~~LP~~~~  207 (511)
T TIGR00806       196 VFLALFLKRPKR  207 (511)
T ss_pred             HHHHHhCCCCch
Confidence            788899997654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.65  E-value=3.6e-14  Score=136.71  Aligned_cols=144  Identities=9%  Similarity=0.045  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h------------chhhhHHHHHHHHhhhhhhhhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L------------FPSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~------------~~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      ...++..++..++++++|+++||+|||++++++.+.+.+..+.. +            ++++..++++|+++|++.|..+
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~  138 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLAS  138 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHh
Confidence            44678888999999999999999999999999998887654432 2            1235677899999999999999


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC---CCCCCchhHHHHHHHHHHHHH
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLG  206 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~  206 (314)
                      +...++++|+.          |+++||+++++......+|..+++++++.+.....   ....+||+. |++..+..++.
T Consensus       139 ~~~~~~i~e~~----------~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~-f~~~~~~~~~~  207 (479)
T PRK10077        139 MLSPMYIAEIA----------PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYM-FASEAIPALLF  207 (479)
T ss_pred             hHHHHHHHhhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHH-HHHHHHHHHHH
Confidence            99999999987          67899999999999999999999888776653211   112468765 44444555555


Q ss_pred             HHHHHhccCCc
Q 021342          207 TILMCFLRKEE  217 (314)
Q Consensus       207 ~~l~~~l~~~~  217 (314)
                      .+..+++||++
T Consensus       208 ~~~~~~l~~s~  218 (479)
T PRK10077        208 LMLLYFVPETP  218 (479)
T ss_pred             HHHHHcCCCCc
Confidence            55566788864

>PRK12382 putative transporter; Provisional

Probab=99.65  E-value=5.8e-14  Score=131.94  Aligned_cols=153  Identities=16%  Similarity=0.102  Sum_probs=111.7

Q ss_pred             CccccccchhhhhHHHHHHHHHHHhhHh-----hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHH
Q 021342           22 TPKNYTRDVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGT   96 (314)
Q Consensus        22 n~~~~~~~~~~l~~~~~~~~~~~~~~~~-----l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~   96 (314)
                      ..+++.+.+..+.++.++.+.+......     ++++++.+...-....++..+...++++++|+++||+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (392)
T PRK12382          9 TRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM   88 (392)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence            4455566666666665555554333222     23445544433334467888899999999999999999999999988


Q ss_pred             HHHHHHHHhh---------hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHh
Q 021342           97 TGYWLFVAAN---------LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (314)
Q Consensus        97 ~~~~~~~~~~---------~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  167 (314)
                      +...+..+.+         ..++++.++++|+++|++.+..+++..+++.+..          ++++|+++++++.....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~a~~~~~~~~~  158 (392)
T PRK12382         89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV----------GPKHSGKVMSWNGMAMY  158 (392)
T ss_pred             HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------CccccchhhhHHHHHHH
Confidence            7765432211         1257788899999999999988877777777664          67899999999999999


Q ss_pred             hhhHHHHHHHHHHHcCC
Q 021342          168 SHQFVGNLITLAVLKDD  184 (314)
Q Consensus       168 ~g~~~G~li~~~i~~~~  184 (314)
                      .|..+||.+++.+....
T Consensus       159 ~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382        159 GALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999988876543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.64  E-value=3.4e-14  Score=135.81  Aligned_cols=236  Identities=9%  Similarity=-0.061  Sum_probs=144.9

Q ss_pred             cCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc----hhhhHHHHHHHHhhhhhhhhh
Q 021342           55 NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF----PSWYTMVPASLYLGFAASIIW  129 (314)
Q Consensus        55 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~----~~~~~l~~~r~l~G~g~~~~~  129 (314)
                      +.+........++.+++..+++++.++++||+|||+.++++.+.+.+..... ..    ++...+++.|++.|++.+..+
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~  136 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW  136 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence            4333333344678888899999999999999999999999887776654432 22    456677889999999999888


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-HHH
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTI  208 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  208 (314)
                      +.....+.++.          |+++||++++++....++|..+++.+.+......    .+||+. |++..++.++ .++
T Consensus       137 ~~~~~~i~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~~w~~~-f~~~~~~~~i~~~~  201 (438)
T TIGR00712       137 PPCGRTMVHWW----------SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF----NDWHAA-LYFPAICAIIVALF  201 (438)
T ss_pred             HHHHHHHHHhc----------CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh----hhhHHH-HHHHHHHHHHHHHH
Confidence            87777777765          6789999999999999999999887765443321    258765 4443444443 444


Q ss_pred             HHHhccCCcccc---c--ccccc---c--cc-cccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc
Q 021342          209 LMCFLRKEEDKG---E--KETAD---A--SV-NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  277 (314)
Q Consensus       209 l~~~l~~~~~~~---~--~~~~~---~--~~-~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~  277 (314)
                      ..+++||+++..   +  +.+.+   .  +. +++.+.++.+++  +.+++++++......+...........++|.++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~  279 (438)
T TIGR00712       202 AFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQ--YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLK  279 (438)
T ss_pred             HHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHH--HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            556677653221   0  00000   0  00 001111221111  3567887777654433322222222345564443


Q ss_pred             c-cccccchhhHHHHHHhhHhHHHHHHHHHHH
Q 021342          278 T-PALGVSGVGGAMAVYGAFDAIFLVELLLRW  308 (314)
Q Consensus       278 ~-~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~  308 (314)
                      . ..+...+.+..+..+++.+++++. ..+++
T Consensus       280 ~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l  310 (438)
T TIGR00712       280 EVKHFALDKSSWAYFLYEYAGIPGTL-LCGWM  310 (438)
T ss_pred             HccCCChhhHHHHHHHHHHHHHHHHH-HHHHH
Confidence            3 345667778877778777777554 33433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.64  E-value=2.2e-14  Score=136.04  Aligned_cols=220  Identities=11%  Similarity=-0.074  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-----h-hchhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-----N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-----~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      .+...+...+++++.|+++||+|||+++..+.+..++..+.     . ..++++.+++.|++.|++.+...++..+++.+
T Consensus        58 ~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  137 (417)
T PRK10489         58 VTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPA  137 (417)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            56677788888899999999999999998887665443221     1 14567788889999999988877766666666


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                      ..          ++++|+++.++.....++|..+||.+++.+....     +|++. |....+..+++.++.+.+|++++
T Consensus       138 ~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  201 (417)
T PRK10489        138 LV----------GRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-----GVAWN-YGLAAAGTFITLLPLLRLPALPP  201 (417)
T ss_pred             cc----------CHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-----hhHHH-HHHHHHHHHHHHHHHHhCCCCCC
Confidence            64          5688999999999999999999999998876543     36554 44444444444455556666432


Q ss_pred             ccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhhHHHHHHhhHh
Q 021342          219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFD  297 (314)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~~~~G~~~  297 (314)
                      ++++++     ++.++.++.+   ...+++|.+.......+......+ ...++|.+... ..++....|+.+..+++..
T Consensus       202 ~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~  272 (417)
T PRK10489        202 PPQPRE-----HPLRSLLAGF---RFLLASPVVGGIALLGGLLTMASA-VRVLYPALADEVWQMGAAQIGLLYAAVPLGA  272 (417)
T ss_pred             CCcccc-----cchHHHHHHH---HHHHcChHHHHHHHHHHHHHHHHh-HHHhhHHHHHhccCCChhHhHHHHHHHHHHH
Confidence            211110     0111222222   234566665544332222222222 23345543332 3456778899888888888


Q ss_pred             HHHHHHHHHHHHh
Q 021342          298 AIFLVELLLRWLY  310 (314)
Q Consensus       298 ~i~~~~~l~~~~~  310 (314)
                      .+++. ..+|+.|
T Consensus       273 ~ig~~-~~~~l~~  284 (417)
T PRK10489        273 ALGAL-TSGWLAH  284 (417)
T ss_pred             HHHHH-HHHHhhh
Confidence            87665 3455443

>PRK10504 putative transporter; Provisional

Probab=99.63  E-value=8.9e-14  Score=133.88  Aligned_cols=173  Identities=9%  Similarity=0.016  Sum_probs=120.7

Q ss_pred             ccchhhhhHHHHHHHHHHHhhHh----hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHH
Q 021342           27 TRDVHILSCAFLLIFLAYGAAQN----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (314)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~----l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~  102 (314)
                      .++++.+.+++++..........    +.++.+.+........+...+..+++++++++++||+|||++++.+.+.+.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            33555666665554443333232    23334433322223356667778889999999999999999999988877665


Q ss_pred             HHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       103 ~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                      .+.. +.++...+++.|++.|++.+..++...+++.+..          ++++|++..+.+....++|..+||.+++.+.
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV----------PREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            5543 6678888999999999999998888777777765          5688999999999999999999999998887


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccC
Q 021342          182 KDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRK  215 (314)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~  215 (314)
                      ++.     +|++.+++ ......++.++. ...|+
T Consensus       159 ~~~-----gw~~~f~~-~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        159 EYA-----SWHWIFLI-NIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             hhc-----cHHHHHHH-HHHHHHHHHHHHHHhCCC
Confidence            654     58765443 334434443333 33444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.63  E-value=7.2e-14  Score=148.25  Aligned_cols=235  Identities=14%  Similarity=0.055  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh----hhchhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~----~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      ...++..+.+.++++++|+++||+|||++++++.+++.+..+.    ...++++.+++.|++.|++.+..+++..+++.+
T Consensus        51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  130 (1146)
T PRK08633         51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPE  130 (1146)
T ss_pred             HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHH
Confidence            3356777888899999999999999999999988765544332    234678899999999999999999998889998


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC----CCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK----GGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  214 (314)
                      +.          ++++|++++|++.....+|.++|+++++++.....    +...+|.+.++++.+...++++++.+.+|
T Consensus       131 ~~----------~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (1146)
T PRK08633        131 LV----------GKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLP  200 (1146)
T ss_pred             hc----------CcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCc
Confidence            86          67899999999999999999999999988865410    00012333333333333334444455566


Q ss_pred             CCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccc-hhhHHHHH
Q 021342          215 KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVS-GVGGAMAV  292 (314)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~-~ig~~~~~  292 (314)
                      +.....+...++   ......++..+.....++++.++......+.......+....+|.++.. ..+... ..|+.+++
T Consensus       201 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~  277 (1146)
T PRK08633        201 KVPAAAPEVFDK---KKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAA  277 (1146)
T ss_pred             CCCCCCcccccc---cccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHH
Confidence            643321111000   0011111112223345666766655444333333333444455544322 334455 77888888


Q ss_pred             HhhHhHHHHHHHHHHHHhh
Q 021342          293 YGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       293 ~G~~~~i~~~~~l~~~~~~  311 (314)
                      .++..++++. ..+++.+.
T Consensus       278 ~~ig~~~g~~-~~g~l~~r  295 (1146)
T PRK08633        278 SAIGIGIGSL-LAGRLSGR  295 (1146)
T ss_pred             HHHHHHHHHH-HHHHHhCC
Confidence            8888777665 56666654

>PRK09952 shikimate transporter; Provisional

Probab=99.63  E-value=1.7e-13  Score=131.19  Aligned_cols=121  Identities=16%  Similarity=0.064  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhh--------HHHHHHHHhhhhhhhhhccchhhH
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ++.+++..+++++.|++.||+|||+++.++.+.+.+..+.. +.+++.        .+++.|+++|++.|..+++...++
T Consensus        71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~  150 (438)
T PRK09952         71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA  150 (438)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence            45566778889999999999999999999999998877664 677765        488899999999999999888899


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC---CCCCCchhHHH
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLF  196 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~---~~~~~~~~~~~  196 (314)
                      .|+.          |+++||+..+.......+|..+|+.+...+.....   ....+||..++
T Consensus       151 ~e~~----------p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~  203 (438)
T PRK09952        151 VESA----------PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFL  203 (438)
T ss_pred             HHhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHH
Confidence            9886          67889999998888888888888776655543211   01246876543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.62  E-value=2e-13  Score=130.45  Aligned_cols=151  Identities=15%  Similarity=0.080  Sum_probs=111.9

Q ss_pred             CCccccCccc-----cccchhhhhHHHHHHHHHHHhhHhhhhhhcC-CCCh----hHHHHHHHHHHHHHHHhhHHHHHHh
Q 021342           16 DSLQVLTPKN-----YTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNL----GTISLGILYTSFTCFSLVASLVVRV   85 (314)
Q Consensus        16 ~~~~p~n~~~-----~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~-~~~~----g~~~~~~~~~~~~~~~~~~~~l~~~   85 (314)
                      |-|||.-|.+     .+++++...++++..|........+...+.+ +.++    -....++..+.++++.++.|++.||
T Consensus        17 ~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr   96 (462)
T PRK15034         17 KPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI   96 (462)
T ss_pred             CCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666652     2467888788888888887766655444322 2222    2233567888999999999999999


Q ss_pred             hchhhHHHHHHHHHHHHHHhh-hc-----hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHH
Q 021342           86 LGSKNALILGTTGYWLFVAAN-LF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN  159 (314)
Q Consensus        86 ~G~k~~l~~g~~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~  159 (314)
                      +|+|+++.++.+...+..+.. +.     ++++.+++.|++.|++ +..+++....++.++          |+++||+++
T Consensus        97 ~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf----------p~~~rG~A~  165 (462)
T PRK15034         97 FGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF----------PKAKQGSAL  165 (462)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC----------CHhHhHHHH
Confidence            999999999998887655543 33     7899999999999998 667777777788776          668999999


Q ss_pred             HHHHHHHhhhhHHHHHHH
Q 021342          160 GEFWGMFASHQFVGNLIT  177 (314)
Q Consensus       160 ~~~~~~~~~g~~~G~li~  177 (314)
                      |++....++|..+++++.
T Consensus       166 Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        166 GINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHHHHHhhHHHHHHHHH
Confidence            999767777776655544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.61  E-value=1.5e-13  Score=132.97  Aligned_cols=156  Identities=13%  Similarity=0.087  Sum_probs=115.3

Q ss_pred             cccchhhhhHHHHHHHHHHHhhHhh----hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH
Q 021342           26 YTRDVHILSCAFLLIFLAYGAAQNL----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (314)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~l----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~  101 (314)
                      +++.+..+.++.++....+.....+    .++.+.+........+...+...+++++.++++||+|||++++++.+...+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   97 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV   97 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3345555555555444433333322    333443333333446677788889999999999999999999999888766


Q ss_pred             HHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHH
Q 021342          102 FVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (314)
Q Consensus       102 ~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i  180 (314)
                      ..+.. +.++.+.+++.|++.|++.+..++....++.+..          ++++|++.++++.....+|..+||.+.+.+
T Consensus        98 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893         98 GTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW----------PKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55543 6788899999999999999988888888888876          668999999999999999999999998887


Q ss_pred             HcCCCCCCCCchhHHH
Q 021342          181 LKDDKGGSTSGTTLLF  196 (314)
Q Consensus       181 ~~~~~~~~~~~~~~~~  196 (314)
                      .+..     +|++.++
T Consensus       168 ~~~~-----~w~~~f~  178 (496)
T PRK03893        168 VPVW-----GWRALFF  178 (496)
T ss_pred             hccC-----CHHHHHH
Confidence            6543     5876543

>TIGR00896 CynX cyanate transporter

Probab=99.61  E-value=8.9e-14  Score=128.96  Aligned_cols=231  Identities=8%  Similarity=0.047  Sum_probs=145.0

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhc
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWV  130 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~  130 (314)
                      +++.+.+........++..+.+.+++++.++++||+|||+++.++.+...+..+....++.+.++..|++.|++.+...+
T Consensus        27 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~~~~~  106 (355)
T TIGR00896        27 RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINV  106 (355)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhc
Confidence            33444333333344678889999999999999999999999999987776544444567888888999999999998776


Q ss_pred             cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 021342          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (314)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (314)
                      ....++.+..           +++|+++++++.....+|..+|+.+++.+.+..+   .+|++. |....+..++..  .
T Consensus       107 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~---~~w~~~-f~~~~~~~~~~~--~  169 (355)
T TIGR00896       107 LLPSLIKRDF-----------PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG---GHWQQA-LAWWALPALLAL--L  169 (355)
T ss_pred             cchHHHHHhC-----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHH-HHHHHHHHHHHH--H
Confidence            6666665543           4689999999999999999999999877765431   136543 333333222222  2


Q ss_pred             HhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhHHH
Q 021342          211 CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAM  290 (314)
Q Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~  290 (314)
                      ..+++.+++++++.    ..++.+       ..+.+|+|+.+.+...+............++|.++....++..+.|..+
T Consensus       170 ~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~  238 (355)
T TIGR00896       170 AWIPQVRRRVAANQ----TTTRLT-------PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLL  238 (355)
T ss_pred             HHhhhhccccCCCC----CCCCCC-------CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            23444322111110    000011       1134566666554433332222222234456655544556678889999


Q ss_pred             HHHhhHhHHHHHHHHHHHHh
Q 021342          291 AVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       291 ~~~G~~~~i~~~~~l~~~~~  310 (314)
                      .++++..++++. ..+|+.|
T Consensus       239 ~~~~~~~i~~~~-~~g~l~d  257 (355)
T TIGR00896       239 ALMQLAQAASAL-LIPALAR  257 (355)
T ss_pred             HHHHHHHHHHHH-hHHHHHh
Confidence            999998888765 4555543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.61  E-value=1.8e-13  Score=128.79  Aligned_cols=150  Identities=15%  Similarity=0.104  Sum_probs=108.8

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHh-----hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~-----l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~   99 (314)
                      +.++++..+.++.+..+.+......     ++++.+.+...-....++.++.+.+++++.|.++||+|||++++.+.+.+
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            5566777666665555554332222     22333333322334467888899999999999999999999999999877


Q ss_pred             HHHHHhh----hc-----hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhh
Q 021342          100 WLFVAAN----LF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (314)
Q Consensus       100 ~~~~~~~----~~-----~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~  170 (314)
                      .+..+..    +.     .++..+++.|++.|++.+...++...++.+..          ++++|+++++++......|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~  161 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV----------GALHTGRVISWNGIATYGAL  161 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc----------ChhhhccchhhhhhhhhHHH
Confidence            5533221    11     24667889999999999998887777777665          66899999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 021342          171 FVGNLITLAVLKDD  184 (314)
Q Consensus       171 ~~G~li~~~i~~~~  184 (314)
                      ++|+.+++.+.+..
T Consensus       162 ~~g~~l~~~l~~~~  175 (399)
T PRK05122        162 AIGAPLGVLLYHWG  175 (399)
T ss_pred             HHHHHHHHHHHHcc
Confidence            99999998887654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.61  E-value=3.1e-13  Score=129.02  Aligned_cols=117  Identities=13%  Similarity=0.040  Sum_probs=92.4

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhh--------HHHHHHHHhhhhhhhhhccchhhHhHhh
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAA  140 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~i~~~~  140 (314)
                      +...+++++.|+++||+|||++++.+.+.+.+..+.. +.++..        .+++.|+++|++.+..+++...+++|+.
T Consensus        67 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  146 (434)
T PRK15075         67 LMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA  146 (434)
T ss_pred             HHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence            3345788999999999999999999999888766654 666655        4678999999999999888888888886


Q ss_pred             hhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC---CCCCCchhHHH
Q 021342          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLF  196 (314)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~---~~~~~~~~~~~  196 (314)
                                |+++|+++++++....+.|..+|+.+++.+.....   ....+||+.++
T Consensus       147 ----------p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~  195 (434)
T PRK15075        147 ----------TPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFL  195 (434)
T ss_pred             ----------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHH
Confidence                      77999999999999888998888888777643211   01236876544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.60  E-value=2e-13  Score=145.03  Aligned_cols=226  Identities=14%  Similarity=0.059  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHH---HHHHHHHHHH-hhhchhhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALIL---GTTGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~---g~~~~~~~~~-~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      ....++..+.+.++++++|.++||+|||+++..   +.+......+ ++..++++.++++|+++|++.+..+++..+++.
T Consensus        55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~  134 (1140)
T PRK06814         55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILP  134 (1140)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhH
Confidence            344566778889999999999999999998643   2222222222 234478999999999999999999999998999


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                      ++.          ++++|++++|+..+..++|.++||++++++....     +|++. |+..+++.+++.++.++++++.
T Consensus       135 ~~~----------~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        135 DHL----------NKDELLGANALVEAGTFIAILLGTIIGGLATISG-----NFVIL-VALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             hhc----------CccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHH-HHHHHHHHHHHHHHHhhCCCCC
Confidence            887          6789999999999999999999999999987654     47543 4444444444555556666653


Q ss_pred             cccccccccccccccchHHHHH-HHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhhHHHHHHhh
Q 021342          218 DKGEKETADASVNFYSYLVSLS-KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGA  295 (314)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~~~~~G~  295 (314)
                      ...+..  +.    ..+..++. .......+++.++.+...++...+..+...+++|.+... ...+....|+.++.+++
T Consensus       199 ~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~  272 (1140)
T PRK06814        199 NAAPDL--KI----DRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSV  272 (1140)
T ss_pred             CCCCCC--ee----ccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHH
Confidence            321110  00    01111112 223345577777777766665555555556677755432 34567788999999999


Q ss_pred             HhHHHHHHHHHHHHh
Q 021342          296 FDAIFLVELLLRWLY  310 (314)
Q Consensus       296 ~~~i~~~~~l~~~~~  310 (314)
                      ..+++++ +.+++.+
T Consensus       273 g~~ig~~-~~g~l~~  286 (1140)
T PRK06814        273 GVAVGSF-LASKLSE  286 (1140)
T ss_pred             HHHHHHH-HHHHHhC
Confidence            8888666 6667654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.58  E-value=1.2e-13  Score=128.31  Aligned_cols=222  Identities=15%  Similarity=0.028  Sum_probs=134.8

Q ss_pred             HHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhh--------HHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        68 ~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      .++...+++++.|+++||+|||+++.++.+.+.+..+.. +.+++.        .+++.|+++|++.+..+++...++++
T Consensus        44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  123 (394)
T TIGR00883        44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE  123 (394)
T ss_pred             HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence            334445788999999999999999999998887655543 555543        47789999999999998888888888


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---GSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                      ..          ++++|++..++......+|..+|++++..+....+.   ...+||+. |++..++.+++..+...++|
T Consensus       124 ~~----------~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~  192 (394)
T TIGR00883       124 YA----------PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIP-FLVSAVLVLIGLYLRRNLEE  192 (394)
T ss_pred             cC----------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHH-HHHHHHHHHHHHHHHHhcCC
Confidence            76          678999999999999999999999887665431110   12357654 44434444444444444565


Q ss_pred             CccccccccccccccccchHHHHHHHHHHhhcChh--HHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhHHHHH
Q 021342          216 EEDKGEKETADASVNFYSYLVSLSKSITTLLADVR--MLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAV  292 (314)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~  292 (314)
                      +++.++++++  +++.+++.++       .+++++  .+......+.............|.++. ...++..+.+..+..
T Consensus       193 ~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  263 (394)
T TIGR00883       193 TPVFEKAQEK--HKKKRGPIRE-------TLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLML  263 (394)
T ss_pred             ChhHHHHHhc--cccccCCHHH-------HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence            4332111100  0011112222       233333  333333333333333333344554432 234556777888888


Q ss_pred             HhhHhHHHHHHHHHHHHh
Q 021342          293 YGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       293 ~G~~~~i~~~~~l~~~~~  310 (314)
                      .++.+.+++. ..+++.|
T Consensus       264 ~~~~~~~~~~-~~g~l~d  280 (394)
T TIGR00883       264 SLILFFITIP-LSGALSD  280 (394)
T ss_pred             HHHHHHHHHH-HHHHHHH
Confidence            8887777654 4455544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.58  E-value=4.9e-13  Score=125.56  Aligned_cols=254  Identities=10%  Similarity=-0.011  Sum_probs=153.8

Q ss_pred             cchhhhhHHHHHHHHHHHhhHhhhhhhcCCCCh----hHHHHHHHHHHHHHHHhhHHHHHHhhchhh----HHHHHHHHH
Q 021342           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL----GTISLGILYTSFTCFSLVASLVVRVLGSKN----ALILGTTGY   99 (314)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~----g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~----~l~~g~~~~   99 (314)
                      +....+.+.++..+.++.......+...++.+.    -....++..+...+++++.++++||+||+.    .+.++...+
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902         4 QPFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIF   83 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            344556777777776655444433333222222    223356677788888899999999999743    333333222


Q ss_pred             HHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHH
Q 021342          100 WLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (314)
Q Consensus       100 ~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~  179 (314)
                      .+. .....++++.+++.|++.|.+.+...+...++..+.            +++|+++.|......++|.++||++++.
T Consensus        84 ~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~------------~~~~~~~~g~~~~~~slG~~~g~~l~g~  150 (382)
T TIGR00902        84 AAA-FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW------------QKQFGLDYGKVRLIGSAAFIIGSALFGG  150 (382)
T ss_pred             HHH-HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH------------HHHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence            221 112457788888999999999887766655444332            3678888999999999999999999988


Q ss_pred             HHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC-ccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHH
Q 021342          180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE-EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF  258 (314)
Q Consensus       180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~  258 (314)
                      +.+..     +|+..+++. .....+.. +.+.++|+ +++++++  +   ++.+    ..++..+.+|+|+.+.+....
T Consensus       151 l~~~~-----g~~~~f~~~-~~~~~~~~-~~~~~~~~~~~~~~~~--~---~~~~----~~~~~~~~l~~~~~~~~l~~~  214 (382)
T TIGR00902       151 LIGMF-----DEQNILAIL-TAGLAFML-IGFLIKPTIPPKDAIP--E---DESQ----GDSAFIALLKNPMNLRFLAAV  214 (382)
T ss_pred             HHHHc-----ChhHHHHHH-HHHHHHHH-HHHHcCCCCCCCcccc--c---cccc----cchhHHHHHcChHHHHHHHHH
Confidence            88764     487654433 22222222 22333332 2211110  0   0001    112234578899887776655


Q ss_pred             HHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          259 AYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       259 ~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      +......+..++.+|.+.....++..++|+++++..+.+++ .....+|+.|-
T Consensus       215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~-~~~~~~~l~~r  266 (382)
T TIGR00902       215 CLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEII-IFAFSNKLFQN  266 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHH-HHHHhHHHHhh
Confidence            55455555566677755555566788899988876666665 45577777654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00898 2A0119 cation transport protein

Probab=99.56  E-value=2.5e-13  Score=131.86  Aligned_cols=137  Identities=15%  Similarity=0.091  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhh
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~  140 (314)
                      ....++.+++..+++++.|+++||+|||++++++.+...+..+. .+.++++.+++.|++.|++.+..++....++.++.
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~  209 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL  209 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheec
Confidence            34568888999999999999999999999999999888776655 47889999999999999999998888888888876


Q ss_pred             hhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                                ++++|++..+++......|.++++++++.+.        +||+. |++..+..++..+..+++||++
T Consensus       210 ----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------~wr~~-~~~~~i~~~~~~~~~~~~~esp  267 (505)
T TIGR00898       210 ----------PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------DWRWL-QLAVSLPTFLFFLLSWFVPESP  267 (505)
T ss_pred             ----------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHH-HHHHHHHHHHHHHHHHhcCCCh
Confidence                      6789999999999999999999999886652        28665 4444444555555557788864

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.55  E-value=2.8e-12  Score=121.76  Aligned_cols=122  Identities=9%  Similarity=0.100  Sum_probs=98.5

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh----hchhhhHHHHHHHHhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----LFPSWYTMVPASLYLGFAAS  126 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~----~~~~~~~l~~~r~l~G~g~~  126 (314)
                      +++.+.+........+..+..+.+++++.+++.||+|||++++++.+.+++..+..    ..++++.+++.|++.|+|.|
T Consensus        30 ~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g  109 (410)
T TIGR00885        30 QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLG  109 (410)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHH
Confidence            44444333333334678888999999999999999999999999998876654432    23578888999999999999


Q ss_pred             hhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          127 IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      ..+++...++.+..          ++++|++.+++.....++|..+||+++..+..
T Consensus       110 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885       110 FLETAANPYILVMG----------PESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHhhhhHHHHHHC----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998888888875          56789999999999999999999999887754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.55  E-value=1.1e-12  Score=119.88  Aligned_cols=138  Identities=17%  Similarity=0.201  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           60 LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        60 ~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      ......++..+...+++++.|+++||+|||+.+.++.+...+..... ..++.+.+++.|++.|++.+..++....++.+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  114 (352)
T cd06174          35 QAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE  114 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHH
Confidence            33444677778888999999999999999999999998887766554 56788999999999999999999988888888


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL  213 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  213 (314)
                      +.          ++++|++.+++......+|..+||.+++.+.+..     +|++. |.+.....++..+..+++
T Consensus       115 ~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174         115 WF----------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-----GWRWL-FLILAILGLLLALLLLFL  173 (352)
T ss_pred             hC----------CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHH-HHHHHHHHHHHHHHHHHH
Confidence            86          5689999999999999999999999998887654     36554 444444444444444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.54  E-value=4.1e-13  Score=123.96  Aligned_cols=269  Identities=9%  Similarity=0.037  Sum_probs=172.6

Q ss_pred             Cccccccchhh-hhHHHHHHHHHHHhhHhhhhhhcCCC-----ChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHH
Q 021342           22 TPKNYTRDVHI-LSCAFLLIFLAYGAAQNLETTVNTEG-----NLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILG   95 (314)
Q Consensus        22 n~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~i~~~~-----~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g   95 (314)
                      .|++++.++++ +-++...++.........++.+.++.     ++|.+ .+.+++.|+++.++.|.++||.++|..+.+|
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i-~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g  100 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGIL-GSAFSITYGVSKFVMGVLSDRSNPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence            44444444443 22333333433333333334443332     33444 5799999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHH
Q 021342           96 TTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (314)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~  174 (314)
                      ++.-++..+.+ +.++...+.+.-++.|+..|.-|++....++.++          +++|||+..+++..+.++|..+-|
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf----------sr~eRG~~~siWn~shNiGGal~~  170 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF----------SRKERGTWWSIWNTSHNIGGALAP  170 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc----------CccccCceEEEehhhhhcccchHH
Confidence            99888777765 7789988888999999999999999999999997          679999999999999999998888


Q ss_pred             HHH--HHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccc--------ccccccc--cc--cccchHHHHHH
Q 021342          175 LIT--LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG--------EKETADA--SV--NFYSYLVSLSK  240 (314)
Q Consensus       175 li~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~--~~--~~~~~~~~~~~  240 (314)
                      ++.  +.+..+.     +||..+|.-.++..++++++.+.+++++++.        ++|+.+.  +.  .+..+.+|.+.
T Consensus       171 ~~~~la~~~~~~-----~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~  245 (448)
T COG2271         171 LVALLAFFAFHG-----GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFV  245 (448)
T ss_pred             HHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHH
Confidence            777  6665543     5876655443444445666666777754321        1111111  11  11134455554


Q ss_pred             HHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhHHHHHHhhHhHHHHHHHHHHHH
Q 021342          241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAIFLVELLLRWL  309 (314)
Q Consensus       241 ~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~  309 (314)
                      +  ..++||..+++....+..=+..--..-+-|.+.. ...++....+.+...|=.....+++ +.|+++
T Consensus       246 ~--YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~L-l~GwlS  312 (448)
T COG2271         246 K--YVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTL-LAGWLS  312 (448)
T ss_pred             H--HHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence            4  3788988888776544433333333334443332 2345566666666666665555554 444444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=3.3e-14  Score=129.96  Aligned_cols=186  Identities=18%  Similarity=0.168  Sum_probs=137.4

Q ss_pred             CChhHHHHHHHHHHHHHHHh----hHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccc
Q 021342           58 GNLGTISLGILYTSFTCFSL----VASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGE  132 (314)
Q Consensus        58 ~~~g~~~~~~~~~~~~~~~~----~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~  132 (314)
                      .+..+...+++..+.++.++    +.|++.||+|+|.-|++|.......++.+ +..++..++++|.++|+|.+..|++.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            33445667788888887776    56889999999999999998877766665 77888899999999999999999999


Q ss_pred             hhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                      .++++|.+         ++++||++++|+.-.+..+|..+||.+|+.+.+..+      ...-|++..++.++-..+-++
T Consensus       181 lamlAd~f---------~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G------k~aPFlVL~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  181 LAMLADVF---------PEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG------KSAPFLVLAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHc---------ccchhhhHHHHHHHHHHhccceecCCcccchHhhcC------CcCcHHHHHHHHHHHHHHHHh
Confidence            99999886         367899999999999999999999999999877643      233477877777776666666


Q ss_pred             ccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhc
Q 021342          213 LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWA  270 (314)
Q Consensus       213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~  270 (314)
                      +-||.+..++..     .+..       .++++++||.++...-....++...+|.-.
T Consensus       246 vi~p~~~~~~~~-----~~~~-------~~~~Ll~dP~I~~~agai~~~n~~lafLeP  291 (464)
T KOG3764|consen  246 VIEPTEMDPDST-----EQGT-------PMWSLLMDPYILLIAGAITFSNSSLAFLEP  291 (464)
T ss_pred             eeCccccCcccc-----ccCc-------cHHHHHhCchHhhhhcchhhccchHHHhCc
Confidence            655544322110     0111       133456667666665555555555555543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.54  E-value=1.6e-12  Score=126.59  Aligned_cols=144  Identities=15%  Similarity=0.024  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchh------hhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ..+...++..++++++++++||+|||+++.++.+++.+..+.. +.++      +..+++.|++.|++.|..++....++
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  140 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIIT  140 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3567778888999999999999999999999988887655542 4343      67888999999999999999999999


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCC------------------CCCCchhHHHHH
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG------------------GSTSGTTLLFIV  198 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~------------------~~~~~~~~~~~~  198 (314)
                      ++++          |+++||+..++......+|..+|+.++..+.....+                  .+.+||.. +.+
T Consensus       141 ~e~~----------p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~-~~~  209 (502)
T TIGR00887       141 SEFA----------TKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL-IGF  209 (502)
T ss_pred             HHhc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHH-HHH
Confidence            9987          779999999999999999999999988765431110                  01258654 344


Q ss_pred             HHHHHHHHHHHHHhccCCcc
Q 021342          199 FLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       199 ~~~~~~~~~~l~~~l~~~~~  218 (314)
                      ..+.+++..++.+++||+++
T Consensus       210 ~~ip~~i~~~~~~~lpESpr  229 (502)
T TIGR00887       210 GAVPALLALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHHHHHHHhCCCCHH
Confidence            44444555555677899753

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.54  E-value=2.1e-12  Score=121.59  Aligned_cols=225  Identities=14%  Similarity=0.064  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh----hc-----hhhhHHHHHHHHhhhhhhhhhccch
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----LF-----PSWYTMVPASLYLGFAASIIWVGEG  133 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~----~~-----~~~~~l~~~r~l~G~g~~~~~~~~~  133 (314)
                      ...++..+...+++++.|+++||+|||+.++.+...+.+.....    ..     ..+..+++.|++.|++.+...+...
T Consensus        42 ~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  121 (396)
T TIGR00882        42 IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIE  121 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHH
Confidence            44678888889999999999999999999988776654322221    11     1233345567777777766555544


Q ss_pred             hhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh-
Q 021342          134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF-  212 (314)
Q Consensus       134 ~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  212 (314)
                      .+..+..            +++++.+|......++|..+||++++.+...      +|+.. |++...+.++..++.++ 
T Consensus       122 ~~~~~~~------------~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~------~~~~~-f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       122 AYIEKVS------------RNSNFEYGKARMFGCVGWALCASIAGILFSI------DPQIV-FWLGSGFALILMLLLMFA  182 (396)
T ss_pred             HHHHHhh------------hhcccccchhhhhcccHHHHHHHHHhhhhcc------CchHH-HHHHHHHHHHHHHHHHHh
Confidence            4433321            2334556666677789999999998876432      47654 44444444444433444 


Q ss_pred             ccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccc----cccccccchhhH
Q 021342          213 LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI----VTPALGVSGVGG  288 (314)
Q Consensus       213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~----~~~~lg~~~ig~  288 (314)
                      .+|+++++++.+.+...++++    +.++..+.+|||+.+.+.+..+............++.++    .....+...+|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~  258 (396)
T TIGR00882       183 KPKAPSSATVANALGANASAF----SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGY  258 (396)
T ss_pred             CCCCchhhhhhcccccccCCC----CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence            333322111110000001111    123345677888876655443322222222222233222    122345667788


Q ss_pred             HHHHHhhHhHHHHHHHHHHHHhh
Q 021342          289 AMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       289 ~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      ...+.++.+++.+. ..+++.|-
T Consensus       259 ~~~~~~i~~~~~~~-~~g~l~~r  280 (396)
T TIGR00882       259 VTTMGELLNALIMF-CAPLIINR  280 (396)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHH
Confidence            88887777777554 55666654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.53  E-value=4.5e-13  Score=128.49  Aligned_cols=217  Identities=8%  Similarity=0.040  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h--chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      .+..+.++.+++++++.+.||+|.|+++..+.++.++.++.. +  ..+++.+++.|+++|++.|..+++.+.+.+.++ 
T Consensus        79 ~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~-  157 (466)
T KOG2532|consen   79 FSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWA-  157 (466)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeEC-
Confidence            677888888999999999999999999999998887766553 2  234557789999999999999999999999997 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccC-Cccc
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRK-EEDK  219 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~-~~~~  219 (314)
                               |++||++..++..+..++|.+++..+++.+-+..    .+|+..+|+. .+++++ .++.+++..| |.++
T Consensus       158 ---------P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~----~GW~sifY~~-g~~g~i~~~~w~~~~~d~P~~h  223 (466)
T KOG2532|consen  158 ---------PPNERSTFIAILTAGSQLGTIITMPVSGLLCESS----LGWPSIFYVF-GIVGLIWFILWFLFYSDSPSKH  223 (466)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC----CCCchHHHHH-HHHHHHHHHHHHHHhcCCcccC
Confidence                     8899999999999999999999999988887652    3698776654 454444 4444444444 3332


Q ss_pred             ccccccc--------ccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhHHH
Q 021342          220 GEKETAD--------ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAM  290 (314)
Q Consensus       220 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~  290 (314)
                      +.-.++|        .+...++..+-   ...+.++++.++......+.-.+...+.....|.++. ...+.+++.|+..
T Consensus       224 ~~is~~El~~I~~~k~~~~~~~~~~v---P~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~s  300 (466)
T KOG2532|consen  224 PNISEKELKYIEKGKSEAHVKKKPPV---PYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLS  300 (466)
T ss_pred             CCCCHHHHHHHHhcccccccCCCCCC---CHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHH
Confidence            2111000        00000000000   1234678888888887777777777777888887765 3567788888766


Q ss_pred             HHHhhHhHH
Q 021342          291 AVYGAFDAI  299 (314)
Q Consensus       291 ~~~G~~~~i  299 (314)
                      ++=-+...+
T Consensus       301 alP~l~~~~  309 (466)
T KOG2532|consen  301 ALPFLAMAI  309 (466)
T ss_pred             HHHHHHHHH
Confidence            554444444

>TIGR00901 2A0125 AmpG-related permease

Probab=99.52  E-value=3e-12  Score=118.63  Aligned_cols=221  Identities=9%  Similarity=0.074  Sum_probs=131.9

Q ss_pred             HHHHHHHhhHHHHHHhh-----chhhHH-HHHHHHHHHHHHh-hhc---hhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           70 TSFTCFSLVASLVVRVL-----GSKNAL-ILGTTGYWLFVAA-NLF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~-----G~k~~l-~~g~~~~~~~~~~-~~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ..+++ .+++++++||+     |||+.+ +.+.+..++..+. .+.   .+.+.+....++.|++.+...++..+++.++
T Consensus        33 ~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~  111 (356)
T TIGR00901        33 LPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEI  111 (356)
T ss_pred             HHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444 88999999998     898875 5566666554333 233   3455566667778888887777777788887


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHh-ccC
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---GSTSGTTLLFIVFLGVITLGTILMCF-LRK  215 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~  215 (314)
                      .          ++++|+++.++......+|.++|+.+++.+....+.   .+.+||.. |++..++.+++.+..++ .||
T Consensus       112 ~----------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~-f~i~ai~~l~~~~~~~~~~~e  180 (356)
T TIGR00901       112 L----------SDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI-FFWTALLILPGLLVTLFLAKE  180 (356)
T ss_pred             C----------CHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH-HHHHHHHHHHHHHHHHHhccC
Confidence            6          678999999999999999999999998877654320   11238654 44444444444444443 566


Q ss_pred             CccccccccccccccccchHHHHHHHHHHhhcChh---HHHHHHHHHHHhHHHhhhhccccccccccccccchhhHHHHH
Q 021342          216 EEDKGEKETADASVNFYSYLVSLSKSITTLLADVR---MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAV  292 (314)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~  292 (314)
                      +.++++++     .+++++.++.+++   .++++.   .+.+....+..........+.+|.+.....++..+.|.+..+
T Consensus       181 ~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~  252 (356)
T TIGR00901       181 PQEDASVP-----KPLTQAVLKPIRE---FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKI  252 (356)
T ss_pred             CCcccccc-----hhHHHHHHHHHHH---HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence            43321110     0011122233333   344443   444443333334444445556665544445668888888888


Q ss_pred             HhhHhHHHHHHHHHHHHh
Q 021342          293 YGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       293 ~G~~~~i~~~~~l~~~~~  310 (314)
                      .|....+......+++.|
T Consensus       253 ~~~~~~~~g~~~~g~l~~  270 (356)
T TIGR00901       253 NGLLGAILGGLIGGIIMQ  270 (356)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            886555444445555553

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.51  E-value=2.7e-12  Score=120.49  Aligned_cols=219  Identities=12%  Similarity=-0.050  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchh----hHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSK----NALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k----~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ..++..+...++++++++++||+|||    +.+.++.....+ ......++.+.+++.|++.|++.+..++...++..++
T Consensus        44 ~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~  122 (382)
T PRK11128         44 LLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW  122 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            35667777888899999999999983    333333322221 1122347788888899999999988888766555554


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK  219 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  219 (314)
                      .            ++|++..+.......+|..+||++++.+.++.     +|+..+ ++..+..++..+..++.||++++
T Consensus       123 ~------------~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-----g~~~~f-~~~~~~~~~~~~~~~~~~~~~~~  184 (382)
T PRK11128        123 Q------------KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-----GEQAIL-WILTAGVASMLLGQLLRPTIMPQ  184 (382)
T ss_pred             H------------hhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-----ChhHHH-HHHHHHHHHHHHHHHccCCCCCc
Confidence            2            45666677777777899999999999987764     487554 33333333333333344443222


Q ss_pred             cccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHH
Q 021342          220 GEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI  299 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i  299 (314)
                      .+++   .  +. ++..   ++..+.+|+|+++.+....+..+...+.....+|.+.....++...+|..+++.++.+++
T Consensus       185 ~~~~---~--~~-~~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~  255 (382)
T PRK11128        185 GESR---Q--QE-SAGW---PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVL  255 (382)
T ss_pred             cccc---c--cc-cccc---chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHH
Confidence            1111   0  00 0001   122356788888776655444444444444455544333345566788888877666655


Q ss_pred             HHHHHHHHHHhh
Q 021342          300 FLVELLLRWLYF  311 (314)
Q Consensus       300 ~~~~~l~~~~~~  311 (314)
                      .+ ...+|+.|-
T Consensus       256 ~~-~~~g~l~~r  266 (382)
T PRK11128        256 IF-AFSNRLFRR  266 (382)
T ss_pred             HH-HHHHHHHHH
Confidence            43 466666653

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.51  E-value=7.4e-12  Score=116.29  Aligned_cols=216  Identities=13%  Similarity=-0.008  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHH-HHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALIL-GTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~-g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .++..+...+.+++.+.++||+|||+.++. +.+...+..+. .+.++++.+++.|++.|.+.+...+....+..+..  
T Consensus        39 ~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~--  116 (375)
T TIGR00899        39 YTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHA--  116 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh--
Confidence            445555666777889999999999887665 44444443333 36678888888899998887766655555555543  


Q ss_pred             hhhhcCCCCccchhhH--HHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccc
Q 021342          143 HASNHKLHEGTVIGSF--NGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDK  219 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~--~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~  219 (314)
                              ++++|++.  .+......++|..+||.+++.+.+..     +|++. |++...+.++..++ .+++||+++.
T Consensus       117 --------~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-----~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~  182 (375)
T TIGR00899       117 --------DRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-----GFTVM-FLTAALAFVLCGVLVWLFLPSYPRG  182 (375)
T ss_pred             --------hhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-----ccHHH-HHHHHHHHHHHHHHHHHhCCCcccC
Confidence                    33444433  57777778899999999988886543     58655 44444444444333 3457764332


Q ss_pred             cccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhHHHHHHhhHhH
Q 021342          220 GEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDA  298 (314)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~~~  298 (314)
                      ++++.      ++.+    .+   +.+++++.+.+....+............+|.++. ....+..+.|..+....+...
T Consensus       183 ~~~~~------~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~  249 (375)
T TIGR00899       183 APGAL------TRLE----VR---GLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEI  249 (375)
T ss_pred             ccccc------Ccch----hh---hhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            21110      0111    11   1345555544332222211112222333443332 234556677776666555554


Q ss_pred             HHHHHHHHHHHh
Q 021342          299 IFLVELLLRWLY  310 (314)
Q Consensus       299 i~~~~~l~~~~~  310 (314)
                      +++. ..+++.|
T Consensus       250 ~~~~-~~g~l~~  260 (375)
T TIGR00899       250 PFML-LAGYLIK  260 (375)
T ss_pred             HHHH-hHHHHHH
Confidence            4332 3445444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.51  E-value=1.1e-13  Score=125.80  Aligned_cols=106  Identities=13%  Similarity=-0.028  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      +.+.+.-.+++..+|.++|++|||+++.+|.++-+++... ....|+..++.+|++.|+..+...++ -++++|+.    
T Consensus        75 SsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~----  149 (451)
T KOG2615|consen   75 SSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVI-RAIISDVV----  149 (451)
T ss_pred             hHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH-HHHHHhhc----
Confidence            4555666677778899999999999999999887775554 36788877777899999999977544 45777776    


Q ss_pred             hhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                            +|++|++.++....++++|.++||.+|+++.+
T Consensus       150 ------sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  150 ------SEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ------ChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence                  67999999999999999999999999999877

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.50  E-value=3.5e-13  Score=135.75  Aligned_cols=144  Identities=12%  Similarity=0.035  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      ...++.+++..++++++|+++||+|||++++++.+++.+..+.. +.++++.++++|++.|++.+...+...+++++++ 
T Consensus       206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~-  284 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL-  284 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            34678889999999999999999999999999998887766553 6788999999999999999999888899999986 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC--------CCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--------GGSTSGTTLLFIVFLGVITLGTILMCFL  213 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l  213 (314)
                               |+++||+.++++.+...+|.+++++++..+....+        ....+||+. +++.++..++.+++.+++
T Consensus       285 ---------p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l-~~i~~lp~ll~ll~~~~l  354 (742)
T TIGR01299       285 ---------AQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVF-VIVCAFPCVFAIGALTFM  354 (742)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHH-HHHHHHHHHHHHHHHHHc
Confidence                     67899999999999999999999998877654321        011357654 444445555566666789


Q ss_pred             cCCc
Q 021342          214 RKEE  217 (314)
Q Consensus       214 ~~~~  217 (314)
                      ||++
T Consensus       355 PESP  358 (742)
T TIGR01299       355 PESP  358 (742)
T ss_pred             CCCH
Confidence            9874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.50  E-value=1.1e-13  Score=135.33  Aligned_cols=144  Identities=13%  Similarity=0.076  Sum_probs=117.5

Q ss_pred             cCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccch
Q 021342           55 NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEG  133 (314)
Q Consensus        55 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~  133 (314)
                      +.+........++++++..+|+++.|+++|++|||++++.+.+.+.++.... +++|+..+++.|++.|++.+...+...
T Consensus       114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~  193 (521)
T KOG0255|consen  114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGF  193 (521)
T ss_pred             eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence            3345556677899999999999999999999999999999999999888775 899999999999999999999999999


Q ss_pred             hhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 021342          134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL  213 (314)
Q Consensus       134 ~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  213 (314)
                      .+++|+.          .+++|+....+ ......+..+++..++++.+       +||+..++. ...+.+.+++.++.
T Consensus       194 ~~~~E~~----------~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------~Wr~~~~~~-~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  194 GLVAEIV----------SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------DWRWLFWII-SIPSGLFLLLWFLP  254 (521)
T ss_pred             hhheeec----------CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------hHHHHHHHH-HHHHHHHHHHHHcc
Confidence            9999886          67999999999 77778888888888777765       398765544 44444444444555


Q ss_pred             cCCc
Q 021342          214 RKEE  217 (314)
Q Consensus       214 ~~~~  217 (314)
                      +|++
T Consensus       255 ~Es~  258 (521)
T KOG0255|consen  255 PESP  258 (521)
T ss_pred             CcCh
Confidence            5765

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.50  E-value=4.2e-12  Score=120.63  Aligned_cols=266  Identities=13%  Similarity=0.076  Sum_probs=136.2

Q ss_pred             ccchhhhhHHHHHHHHHHHhhHhh-----hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH
Q 021342           27 TRDVHILSCAFLLIFLAYGAAQNL-----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (314)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~l-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~  101 (314)
                      ++++..+.+.+++.+.++.....+     +++.+.+...-....++..+...++++++|.++||+|||++++++..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            345556556666665554332222     222332322223346788889999999999999999999999887665543


Q ss_pred             HHHhhhc----hhhh-HHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHH
Q 021342          102 FVAANLF----PSWY-TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (314)
Q Consensus       102 ~~~~~~~----~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li  176 (314)
                      .....+.    +... .......+.|+..+..+.+....+.++.++        ..++++..+|......++|..+||.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~g~~~~~~~~g~~i~~~~  160 (420)
T PRK09528         89 LFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER--------VSRRSGFEYGRARMWGSLGWALCAFI  160 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH--------HHhhccccchhhHHhhhHHHHHHHHH
Confidence            3221111    1110 111122333333333333322223333321        12456777777777889999999999


Q ss_pred             HHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHH
Q 021342          177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP  256 (314)
Q Consensus       177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p  256 (314)
                      ++.+...      +|+.. |++..+..++..++.+++++++++++++.++...+++   +...++..+.+|+|+++.+..
T Consensus       161 ~g~l~~~------~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~l  230 (420)
T PRK09528        161 AGILFNI------NPQIN-FWLGSGSALILLVLLFFAKPDAPSTAKVANALGANAS---AVSLKDALALLKLPKFWFLVL  230 (420)
T ss_pred             HHHHHhc------CchHh-HHHHHHHHHHHHHHHhcccccccchhhhccchhcccc---cccHHHHHHHccCCCeEeehH
Confidence            8877542      36543 4444444444444444444332221111000000011   112344445778887655443


Q ss_pred             HHHHHhHHHhhhhccccccc----cccccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          257 LFAYSGLQQAFVWAEFTKEI----VTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       257 ~~~~~g~~~~f~~~~~~~~~----~~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      ..+............+|.+.    .....+..+.|++..+.++.+++++. ..+++.|-
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr  288 (420)
T PRK09528        231 YVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMF-FAPFIINR  288 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            33222222222222333322    12234556788888888888877554 55666554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.45  E-value=5.1e-11  Score=112.55  Aligned_cols=215  Identities=12%  Similarity=0.098  Sum_probs=129.1

Q ss_pred             HHHHhhHHHHHHhh-----chhh-HHHHHHHHHHHHHHh-hhc---hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           73 TCFSLVASLVVRVL-----GSKN-ALILGTTGYWLFVAA-NLF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        73 ~~~~~~~~~l~~~~-----G~k~-~l~~g~~~~~~~~~~-~~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .+..+++++++||+     |||+ .+.++.++.++.... .+.   .+.+.+++..++.|++.+...++..+++.++.  
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~--  123 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVL--  123 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            47778999999999     8765 677777666543333 233   34666777777788888877777777888875  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK  222 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  222 (314)
                              +++||+++.++.......|.++|+.++..+.+..    .+||.. |++..++.++..+..+++|||+..+++
T Consensus       124 --------~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~----~gw~~~-f~i~a~~~l~~~l~~~~~~e~~~~~~~  190 (402)
T PRK11902        124 --------HPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV----LGWGNT-YLLMAGLMLAGALTTLWAPEPEVPARP  190 (402)
T ss_pred             --------ChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc----cCHHHH-HHHHHHHHHHHHHHHHhcCCCcccccc
Confidence                    6688999999999999999999999888776532    158765 444444444444444567776432211


Q ss_pred             ccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhHHHHHHhhHhHHHH
Q 021342          223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAIFL  301 (314)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~~~i~~  301 (314)
                      ++     +.+++.++   ...+.+++|..+.+....+.......+..+..+..+. ...++.+++|+.+.+.|....+..
T Consensus       191 ~~-----~~~~~~~~---~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g  262 (402)
T PRK11902        191 PR-----SLGEAVVG---PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVG  262 (402)
T ss_pred             cc-----hhHHHHHH---HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHH
Confidence            10     00111222   3335677887665554333332222222233332222 235667788888777666533333


Q ss_pred             HHHHHHHHh
Q 021342          302 VELLLRWLY  310 (314)
Q Consensus       302 ~~~l~~~~~  310 (314)
                      ....+++.|
T Consensus       263 ~~~~g~l~~  271 (402)
T PRK11902        263 ALAGGTLMV  271 (402)
T ss_pred             HHHHHHHHH
Confidence            334555543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.39  E-value=2.2e-11  Score=118.22  Aligned_cols=182  Identities=9%  Similarity=0.014  Sum_probs=121.7

Q ss_pred             cccCccccccchhhhhHHHHHHHHHHHhhH-----hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHh-hchhhHH
Q 021342           19 QVLTPKNYTRDVHILSCAFLLIFLAYGAAQ-----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRV-LGSKNAL   92 (314)
Q Consensus        19 ~p~n~~~~~~~~~~l~~~~~~~~~~~~~~~-----~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~G~k~~l   92 (314)
                      .|-|.+++.|.+..+.+..+.--.+|....     -++++++.+........+.+.....+..+++|.++|| +|||+++
T Consensus         5 ~~~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~   84 (489)
T PRK10207          5 APMGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI   84 (489)
T ss_pred             CCcchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence            455666667777776655544434443332     2234444443333344455555666677789999999 9999999


Q ss_pred             HHHHHHHHHHHHhh-hchh-hhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhh
Q 021342           93 ILGTTGYWLFVAAN-LFPS-WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (314)
Q Consensus        93 ~~g~~~~~~~~~~~-~~~~-~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~  170 (314)
                      ++|.+.+.+..+.. +.++ ...++++|+++|+|.|...+...+++++..++        ++++|+++++++....++|.
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~--------~~~~~~~~~~~~~~~~nig~  156 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPP--------KDPRLDGAFTLFYMSINIGS  156 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCC--------CchhhhcchhHHHHHHHHHH
Confidence            99999998765543 4444 33455799999999999998888888887621        12256888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342          171 FVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (314)
Q Consensus       171 ~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  214 (314)
                      .+||.+++++.++.     +|++.++ +..+...++++...+.+
T Consensus       157 ~~g~~l~g~l~~~~-----gw~~~F~-i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        157 LISLSLAPVIADKF-----GYSVTYN-LCGAGLIIALLVYFACR  194 (489)
T ss_pred             HHHHHHHHHHHHhh-----ChHHHHH-HHHHHHHHHHHHHHHcc
Confidence            99999999997764     5865543 33332333343333444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=1.6e-10  Score=110.06  Aligned_cols=223  Identities=9%  Similarity=-0.069  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhch-hhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~-k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .++..+...+++++++.++||+|+ |+++.++.++..+.... .+.++++.+++.|++.|++.++..+...+...+...+
T Consensus        44 ~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  123 (418)
T TIGR00889        44 YSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQ  123 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhh
Confidence            578888888999999999999965 88888877776554433 3567788888899999998776655443333222211


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK  222 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  222 (314)
                      +.+  |......|.+..|      .+|.++||++++.+....     .|. + +.+..++.++..++.+++||+++.+ +
T Consensus       124 ~g~--~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-----~~~-~-f~~~~~~~~~~~~~~~~~~e~~~~~-~  187 (418)
T TIGR00889       124 AGL--DVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-----SNI-Q-LYITAGSSALLGVFALTLPDIPVAK-S  187 (418)
T ss_pred             cCC--CchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-----hhH-H-HHHHHHHHHHHHHHHhcCCCCCCCc-c
Confidence            110  1112234555555      368888898887762211     132 2 3344444444444556677753221 1


Q ss_pred             ccccccccccchHHHHH-HHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccccc--------ccccchhhHHHHHH
Q 021342          223 ETADASVNFYSYLVSLS-KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--------ALGVSGVGGAMAVY  293 (314)
Q Consensus       223 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~--------~lg~~~ig~~~~~~  293 (314)
                      +++       .+.++.. .+..+.+|+|+++.+....+..+....+.+..++.+....        .++.+.+|+.+.+.
T Consensus       188 ~~~-------~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~  260 (418)
T TIGR00889       188 TAK-------MSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLS  260 (418)
T ss_pred             ccc-------cCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHH
Confidence            100       0111111 1123467888877666655555544445555555433222        13457789999999


Q ss_pred             hhHhHHHHHHHHHHHHhh
Q 021342          294 GAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       294 G~~~~i~~~~~l~~~~~~  311 (314)
                      ++.+++.+. ..+|+.|-
T Consensus       261 ~i~~i~~~~-~~g~l~dr  277 (418)
T TIGR00889       261 QFSEIFFIL-TIPFFLKR  277 (418)
T ss_pred             HHHHHHHHH-HHHHHHHH
Confidence            988888764 66676653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PTZ00207 hypothetical protein; Provisional

Probab=99.35  E-value=9.4e-11  Score=115.16  Aligned_cols=131  Identities=14%  Similarity=0.132  Sum_probs=95.2

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc------hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~------~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      ..++.+++++|++.||+|||+++.++.+.+.+..+.. +.      ++.+.+++.|++.|+|.+..+++....+.++   
T Consensus        72 ~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~---  148 (591)
T PTZ00207         72 IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSV---  148 (591)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            4556777889999999999999999998887655442 33      5788999999999999998887776666665   


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHH-HHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFV-GNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~-G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                              ++++||++.|+......+|.++ +++...++. +      +|++.+++......+++++...++++++.
T Consensus       149 --------Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~------~~~~~fl~l~vl~~vv~ll~~~~vr~p~~  210 (591)
T PTZ00207        149 --------FPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D------NTSAYFFFLMSFALVVGILAIVFMRLPPF  210 (591)
T ss_pred             --------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------hHHHHHHHHHHHHHHHHHHHHhheeCCcc
Confidence                    3589999999999999999975 555555443 2      25554444433333445555566776643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.35  E-value=3.6e-10  Score=109.36  Aligned_cols=140  Identities=9%  Similarity=-0.029  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHh-hchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~-~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~  140 (314)
                      ...+.......++++++|+++|| +|||+++.++.+++++..+.. +.++.+.++.+|++.|+|.|...+...+++++..
T Consensus        52 ~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~  131 (475)
T TIGR00924        52 IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLY  131 (475)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhc
Confidence            34567777888889999999999 899999999999887655543 5567777888999999999999888888888876


Q ss_pred             hhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                      ++       .++++|++++++++...++|..+||++++.+.++.     +|++.+ .+..+..+++.+.+++.++
T Consensus       132 ~~-------~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-----g~~~~f-~~~~~~~~~~~l~~~~~~~  193 (475)
T TIGR00924       132 ER-------GDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-----GYHVGF-NLAAVGMVIGLLTFFAGRH  193 (475)
T ss_pred             CC-------CCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-----ChHHHH-HHHHHHHHHHHHHHHHccc
Confidence            21       01135888999999999999999999999887653     476543 3334444445544444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.34  E-value=3.2e-11  Score=117.82  Aligned_cols=141  Identities=19%  Similarity=0.210  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      .-.+..+++-+++++++++++|++|||++++++.+.|.+..+. .+++|...++++|++.|+|.|........|++|++ 
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia-  171 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA-  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC-
Confidence            3367888888999999999999999999999999999886666 47889999999999999999999888999999987 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                               |++.||...+.+......|..+|.+++....+. .   .+||..+++. .+.+++..+..+++||+++
T Consensus       172 ---------p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~---~~Wr~~~~~~-~i~~~~~~~~~~~~pesp~  234 (513)
T KOG0254|consen  172 ---------PAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y---AGWRIPLGLA-LIPAVILALGMLFLPESPR  234 (513)
T ss_pred             ---------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C---ccHHHHHHHH-HHHHHHHHHHHHhCCCChH
Confidence                     778999999999998888888886666554322 0   2587544433 3333433334778888653

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.1e-10  Score=109.75  Aligned_cols=140  Identities=20%  Similarity=0.182  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh----hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~----~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ..+++.++..+|++++++++|++|||.++.++.+...+....    ...++...++.+|++.|+..+.....+.-|++|+
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~  144 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEI  144 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Confidence            367888888899999999999999999999888765443322    3457889999999999999999999999999998


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHH-HHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA-VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                      +          |.+.||........+..+|..+|..++.- +..+    ...|+ .++....+.+++..++..++||+++
T Consensus       145 s----------P~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt----~~~W~-~l~~~~~i~~~~~l~~l~~~PESPk  209 (485)
T KOG0569|consen  145 S----------PKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT----EDLWP-YLLAFPLIPALLQLALLPFLPESPK  209 (485)
T ss_pred             C----------hhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC----CcchH-HHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            7          78999998777777777777777665432 2111    12363 3344445555667777788999653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.32  E-value=4.4e-10  Score=110.08  Aligned_cols=149  Identities=10%  Similarity=0.047  Sum_probs=97.5

Q ss_pred             hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhh
Q 021342           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASII  128 (314)
Q Consensus        50 l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~  128 (314)
                      +-.+++.+++...++ ....+..++++.+.|.++|.+|||+.++.+.+.+.+-.+. .-++|..+++++.++.|+|+|..
T Consensus        70 I~~diG~~~~~~w~~-~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~  148 (599)
T PF06609_consen   70 INADIGGSDNWSWFS-TAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQ  148 (599)
T ss_pred             HHHhcCCCccchHHH-HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHH
Confidence            334444444444443 3455678888899999999999999999999988775554 57899999999999999998876


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                      .... ..++|..          |.+.|+...++...........|+.++..+..+     .+|||.+|+. ++...++++
T Consensus       149 ~~~~-~~isEl~----------p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-----~~WRw~~~~~-~i~~~i~~v  211 (599)
T PF06609_consen  149 ELAA-LAISELV----------PNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-----SGWRWIFYIF-IIWSGIALV  211 (599)
T ss_pred             HHHH-HHHHHhc----------ccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-----CCcchHHHHH-HHHHHHHHH
Confidence            4332 2355554          567777666555444444444567776555433     2698875554 444444443


Q ss_pred             H-HHhccCC
Q 021342          209 L-MCFLRKE  216 (314)
Q Consensus       209 l-~~~l~~~  216 (314)
                      + ++|..+|
T Consensus       212 l~~~fY~PP  220 (599)
T PF06609_consen  212 LIFFFYFPP  220 (599)
T ss_pred             HHHHHhCCC
Confidence            3 3444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.32  E-value=4.2e-10  Score=109.74  Aligned_cols=221  Identities=13%  Similarity=0.032  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh--h----hchhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~--~----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      .....+-..+.++++|.++||+.||++|+.+-+...+..+.  .    -..+.+.+++..++.|++.+...++..+++.+
T Consensus        51 ~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~  130 (524)
T PF05977_consen   51 QAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPE  130 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777788889999999999999999988765432221  1    12467788889999999999999998888888


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                      ..          |+++..+++++.....+++.++||.+++.+....+     - ...|.+-.+.-++.++.....+++..
T Consensus       131 lV----------~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-----~-~~~f~inalsfl~~i~~l~~~~~~~~  194 (524)
T PF05977_consen  131 LV----------PKEDLPAANALNSISFNIARIIGPALGGILVAFFG-----A-AAAFLINALSFLISILALLRWKPPPP  194 (524)
T ss_pred             hc----------cHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHcccccc
Confidence            76          56889999999999999999999999998876432     1 22244333332333333333433222


Q ss_pred             ccccccccccccccchHHHHHHHHHHhhc-ChhHHHHHHHHHHHhHHHhhhhcccccccc-ccccccchhhHHHHHHhhH
Q 021342          219 KGEKETADASVNFYSYLVSLSKSITTLLA-DVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAF  296 (314)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~lll~p~~~~~g~~~~f~~~~~~~~~~-~~~lg~~~ig~~~~~~G~~  296 (314)
                      +++.        +++++.+.+++=++..+ +|.+.......+..++..+.....+|-... ....|....|++++++|+.
T Consensus       195 ~~~~--------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvG  266 (524)
T PF05977_consen  195 PSSL--------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVG  266 (524)
T ss_pred             cccc--------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            1111        12234444555444444 555554444444455555555666663322 2346688889999999999


Q ss_pred             hHHHHHHHHHHHHh
Q 021342          297 DAIFLVELLLRWLY  310 (314)
Q Consensus       297 ~~i~~~~~l~~~~~  310 (314)
                      .+++++ ++.|+-+
T Consensus       267 ai~Gal-~~~~l~~  279 (524)
T PF05977_consen  267 AILGAL-LLPRLRR  279 (524)
T ss_pred             HHHHHH-HHHHhhc
Confidence            999887 4555543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.26  E-value=1.6e-10  Score=116.68  Aligned_cols=136  Identities=11%  Similarity=-0.002  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      .+..++..++++++++++||+|||++++++.++.++..+.. +.++...+++.+++.|++.+..|++...+++++.    
T Consensus       602 ~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~----  677 (742)
T TIGR01299       602 FLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY----  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence            34445667788899999999999999999988877665543 5566677777888999999889988888889886    


Q ss_pred             hhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                            |.++|++++|+..+...+|.++||++++.+....       ....++++.++.+++.++.+++||+..
T Consensus       678 ------Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-------~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       678 ------PSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-------KAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence                  6789999999999999999999999988765432       233455555666666677777887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.24  E-value=2.9e-10  Score=89.74  Aligned_cols=131  Identities=17%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             HHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc
Q 021342           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (314)
Q Consensus        69 ~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~  147 (314)
                      .....+++++.+++.||+|||+.+..+.....+..... ..++.+.++..+++.|++.+..++....++.+..       
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------   80 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY-------   80 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC-------
Confidence            34556677888999999999999998887776554443 5577788888999999999988888777788775       


Q ss_pred             CCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH-hccC
Q 021342          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC-FLRK  215 (314)
Q Consensus       148 ~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~  215 (314)
                         ++++|++..++.......|..+||.+.+.+.+..     +|++. |.+...+.+++.+... +.||
T Consensus        81 ---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        81 ---PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-----GWRAP-FLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             ---ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-----chHHH-HHHHHHHHHHHHHHHhhcCCC
Confidence               5689999999999999999999999998886543     46544 4444444444444443 3443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.6e-09  Score=99.90  Aligned_cols=207  Identities=14%  Similarity=0.168  Sum_probs=136.6

Q ss_pred             hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh----hchhhhHHHHHHHHhhhh
Q 021342           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----LFPSWYTMVPASLYLGFA  124 (314)
Q Consensus        49 ~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~----~~~~~~~l~~~r~l~G~g  124 (314)
                      .+++..+.+......-...+|.+|.+.+++++.+.+|+|+|..+++|+.+|++....+    ...++...+.+-++.|.|
T Consensus        38 ~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~G  117 (422)
T COG0738          38 HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASG  117 (422)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            3344444444444444678899999999999999999999999999999998755544    235788888888999999


Q ss_pred             hhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC-----C-C--------CCCC
Q 021342          125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-----K-G--------GSTS  190 (314)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~-----~-~--------~~~~  190 (314)
                      .+.+-++...|++...          ++++..+++++-..++.+|.++||+++..+..+.     + .        .-.+
T Consensus       118 i~~LetaaNp~v~~lg----------~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~  187 (422)
T COG0738         118 IGLLETAANPYVTLLG----------KPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASS  187 (422)
T ss_pred             hHHHHhccchHHHHhC----------CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence            9999999999999987          4567788899999999999999999977665421     0 0        0011


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHH-HHHHHHhHHHhhhh
Q 021342          191 GTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII-PLFAYSGLQQAFVW  269 (314)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~-p~~~~~g~~~~f~~  269 (314)
                      + +..|..+....++..+.....|.|+.+...+ ++   .++++.     ...+.+++|+..+-. -.++|.|.+.+.. 
T Consensus       188 v-~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~-~~---~~~~~~-----~~~~l~~~~~~~~gvl~~FlYVG~Eva~g-  256 (422)
T COG0738         188 V-QFPYLILAGLLVLLAVLILLSKLPDLQVAAP-SL---GASGSA-----GLSSLFQNKHLRLGVLAIFLYVGAEVAIG-  256 (422)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHhccCCcCCcccc-cc---cccccc-----hHHHHHhChHHHHHHHHHHHHHhHHHHHH-
Confidence            3 2345554444333333333334333222111 00   011110     123466777776644 6788999988774 


Q ss_pred             ccccccc
Q 021342          270 AEFTKEI  276 (314)
Q Consensus       270 ~~~~~~~  276 (314)
                      ++++++.
T Consensus       257 sfl~~y~  263 (422)
T COG0738         257 SFLVSYL  263 (422)
T ss_pred             HHHHHHH
Confidence            4555444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.23  E-value=6.1e-09  Score=98.16  Aligned_cols=132  Identities=12%  Similarity=0.048  Sum_probs=78.8

Q ss_pred             HHHHHHHHhhHHHHHHhhchhhHHH-HHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhh
Q 021342           69 YTSFTCFSLVASLVVRVLGSKNALI-LGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (314)
Q Consensus        69 ~~~~~~~~~~~~~l~~~~G~k~~l~-~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~  146 (314)
                      ...+.++++++++ +||+|||+.++ .+.+...+.... .+.++++.++..+.+.|...+..++....+..+..      
T Consensus        62 ~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------  134 (393)
T PRK15011         62 VIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHA------  134 (393)
T ss_pred             HHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh------
Confidence            3455566666666 99999998754 444443333332 25567776655555555444555555544454443      


Q ss_pred             cCCCCccch--hhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHH-HHHHHhccCCc
Q 021342          147 HKLHEGTVI--GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG-TILMCFLRKEE  217 (314)
Q Consensus       147 ~~~~~~~~r--g~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~  217 (314)
                          ++++|  +...++..+..++|.++||.+++.+.++.     +||.. |++..+..++. ++..+++||++
T Consensus       135 ----~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-----gw~~~-f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        135 ----DKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-----SFTVM-YLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             ----hhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-----ChHHH-HHHHHHHHHHHHHHHHhhcCccC
Confidence                22223  44557777888999999999999887654     58754 44444444433 33345577653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.22  E-value=1.8e-09  Score=102.66  Aligned_cols=229  Identities=11%  Similarity=0.009  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHh----hch-hhHHHHHHHHHHHHHHhh-hchh------hhHHHHHHHHhhhhhhhhhc
Q 021342           63 ISLGILYTSFTCFSLVASLVVRV----LGS-KNALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWV  130 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~----~G~-k~~l~~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~~~~~~  130 (314)
                      ...++..+..++.+++.|.++||    +|| |+.++++...+++..+.. ..++      ...++..+++.|++.+...+
T Consensus        39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (437)
T TIGR00792        39 TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNI  118 (437)
T ss_pred             HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcc
Confidence            33566667888999999999997    677 456777777666544432 3332      34555677888888877655


Q ss_pred             cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC--CCCCCchhHHHHHHHHHHHHHHH
Q 021342          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                      +..++..+..         ++++||++..++-.....+|..+++.+.+.+....+  ....+|++. +++..+++++..+
T Consensus       119 ~~~al~~~~~---------~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~-~~i~~~l~~~~~~  188 (437)
T TIGR00792       119 PYWSLVPAIT---------LDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMF-ALVLALIGVVSLI  188 (437)
T ss_pred             cHhhCccccc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHH-HHHHHHHHHHHHH
Confidence            5555555554         246899999888777777777776665544443211  112356543 3333444333333


Q ss_pred             H-HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccc-cchh
Q 021342          209 L-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VSGV  286 (314)
Q Consensus       209 l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg-~~~i  286 (314)
                      + .++++|++++++++     .+++.+.++.+|   +.+++|.++.+....+...+........ ..++....++ ....
T Consensus       189 ~~~~~~~e~~~~~~~~-----~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  259 (437)
T TIGR00792       189 ICFFGTKERYSEIPKN-----IEKKLSLKQIFK---ALFKNDQLLILCLAYLFYNLAFNIKNGV-QVYYFTYVLGDPELF  259 (437)
T ss_pred             HHHcCCEecCCCCCcc-----cccCCCHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHHcch-hheeEeeecCChHHH
Confidence            3 34566643221111     011223444444   3567777766554443333322222222 2233332333 3445


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      +....+.++..++++. ..+++.|-
T Consensus       260 ~~~~~~~~i~~ii~~~-~~~~l~~r  283 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVL-LFPRLVKK  283 (437)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            5555555555555443 44555543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.19  E-value=9e-09  Score=100.30  Aligned_cols=123  Identities=8%  Similarity=-0.003  Sum_probs=88.3

Q ss_pred             HHHHHHhhHHHHHHh-hchhhHHHHHHHHHHHHHHhh-hc-hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc
Q 021342           71 SFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~-~G~k~~l~~g~~~~~~~~~~~-~~-~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~  147 (314)
                      .....++++|+++|| +|||++++++.+++.+..... +. ++...++++|++.|+|.|...+...+++++..++     
T Consensus        69 ~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~-----  143 (500)
T PRK09584         69 LVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK-----  143 (500)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC-----
Confidence            334445679999999 599999999998887644433 43 3455667789999999998888777788887621     


Q ss_pred             CCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH
Q 021342          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (314)
Q Consensus       148 ~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (314)
                         ++++|+.++++++...++|..+||++++.+.++.     +|++.++ +..+...+++
T Consensus       144 ---~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-----g~~~~F~-i~~i~~~i~~  194 (500)
T PRK09584        144 ---DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-----GWSVAFA-LSVVGMLITV  194 (500)
T ss_pred             ---CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-----CHHHHHH-HHHHHHHHHH
Confidence               2234566789999999999999999999987654     4865543 3333333333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.19  E-value=2.9e-09  Score=103.48  Aligned_cols=233  Identities=15%  Similarity=0.055  Sum_probs=148.2

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHH-hhhchhh-hHHHHHHHHhhhhhhhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANLFPSW-YTMVPASLYLGFAASII  128 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~-~~~~~~~-~~l~~~r~l~G~g~~~~  128 (314)
                      +++.+.+.....+..++...+..+++++.+.+.||+|.|.+.++|.+...+..+ +.+.++. ..++...++.|+|.|..
T Consensus        73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~  152 (509)
T KOG2504|consen   73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLI  152 (509)
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhh
Confidence            344444444344556788888888899999999999999999999998876444 4566665 46667889999999999


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                      +...-.++..+           ++++|+.+.|+-.+...+|.++=|.+.-.+....     +||+...+. ..+.+-.++
T Consensus       153 ~~paiviv~~Y-----------F~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-----G~r~~~l~~-~~~~l~~~~  215 (509)
T KOG2504|consen  153 YLPAVVILGTY-----------FEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-----GWRGALLIF-GGISLNVLV  215 (509)
T ss_pred             hcchhhhhhhH-----------hHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-----CcHHHHHHH-HHHHHHHHH
Confidence            99988888876           4689999999998888888877777766666654     587765443 333333334


Q ss_pred             HHHhccCCc-cc--c--------------------ccccccc---c----------ccccchH---HHHHHHH---HHhh
Q 021342          209 LMCFLRKEE-DK--G--------------------EKETADA---S----------VNFYSYL---VSLSKSI---TTLL  246 (314)
Q Consensus       209 l~~~l~~~~-~~--~--------------------~~~~~~~---~----------~~~~~~~---~~~~~~~---~~~l  246 (314)
                      ..+.+++.. +.  +                    ++..++.   .          ...++..   .++-...   .+++
T Consensus       216 ~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll  295 (509)
T KOG2504|consen  216 AGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL  295 (509)
T ss_pred             HHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH
Confidence            444444411 10  0                    0000000   0          0000000   1111111   4678


Q ss_pred             cChhHHHHHHH--HHHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHHHH
Q 021342          247 ADVRMLLIIPL--FAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       247 ~~~~~lll~p~--~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                      +|+.++.+...  +.+.|+..-+.  .+|.+..+..+..++..+.+.+.|+++.++-+
T Consensus       296 ~~~~fl~~~~~~~~~~~g~~~p~~--~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi  351 (509)
T KOG2504|consen  296 KDPKFLLLALSNLFAYLGFNVPFV--YLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRI  351 (509)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCChhhhHHHHHHHHHhhhhhhh
Confidence            88877776533  33344333222  34434345567788889999999999998665

>TIGR00788 fbt folate/biopterin transporter

Probab=99.19  E-value=7.3e-09  Score=100.14  Aligned_cols=229  Identities=11%  Similarity=0.031  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhc-----hhhHHHHHHHHHH-HHHHhh-hchhhhHHH-HHHHHhhhhhhhhhccchhhH
Q 021342           65 LGILYTSFTCFSLVASLVVRVLG-----SKNALILGTTGYW-LFVAAN-LFPSWYTMV-PASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G-----~k~~l~~g~~~~~-~~~~~~-~~~~~~~l~-~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      .++.++.+.+-.+ +++++|+++     ||+.++++.+... +..... ..++..... ...++.+++.+..-++.-++.
T Consensus        67 ~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~  145 (468)
T TIGR00788        67 VGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLY  145 (468)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            5777888888666 999999998     8888888876652 221111 224433333 377889999988877777777


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                      .|..++        +++.++...+..|.....|.++|+.+++.+.+..     +|+.. |.+..++.++..+..++++|+
T Consensus       146 ~e~~~~--------~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~-----~~~~~-f~~~a~l~ll~~~~~~~~~E~  211 (468)
T TIGR00788       146 SERIRE--------SPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT-----LTRIL-FLITAALLLLQLFVSNLSKER  211 (468)
T ss_pred             hhhhhc--------CCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-----CcchH-HHHHHHHHHHHHHHHHhcccc
Confidence            776521        2344455666777778899999999999887654     47654 434444444444445677886


Q ss_pred             cc-cccccccc-------ccccccchHHHHHHHHHHhhcChhHHHHHH-HHH-HHhHHHhhhhccccccccccccccchh
Q 021342          217 ED-KGEKETAD-------ASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFA-YSGLQQAFVWAEFTKEIVTPALGVSGV  286 (314)
Q Consensus       217 ~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~lll~p-~~~-~~g~~~~f~~~~~~~~~~~~~lg~~~i  286 (314)
                      +. .+++..++       .......+.++.+++..+.+++|.+..... .++ +. ...+.....|-.......++++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~~~~~~~~f~~~~~~lG~s~~~~  290 (468)
T TIGR00788       212 RAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-NLPGASGSVFCATTQCLPGGPSFS  290 (468)
T ss_pred             cccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hcCCCCceeEEEEcccCCCCcchh
Confidence            41 11110000       000001123455666777788877765332 222 22 111111111111112345779999


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      |.+..+.|+.+++++. +.+|+.|
T Consensus       291 G~~~~~~~v~~i~g~~-~~~~~~~  313 (468)
T TIGR00788       291 GMSKVVGNLGSLCGVG-GYDRFLK  313 (468)
T ss_pred             hhHHHHHHHHHHHHHH-HHHHHHh
Confidence            9999999988888665 5666554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.19  E-value=1.3e-09  Score=103.83  Aligned_cols=144  Identities=15%  Similarity=0.247  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h-ch---hhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-FP---SWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~-~~---~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .++..+...++.++.+.++||+|+|+++.++.+++.+..... . .+   +...+++.+++.|++.+...+....++++.
T Consensus       257 ~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~  336 (418)
T TIGR00889       257 MSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKE  336 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666777889999999999999999998876643332 2 22   235667789999999998877777777877


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHH-HHHhhhhHHHHHHHHHHHcCCCC-CCCCchhHHHHHHHHHHHH-HHHHHHhccCC
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKG-GSTSGTTLLFIVFLGVITL-GTILMCFLRKE  216 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~-~~~~~g~~~G~li~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~  216 (314)
                      .          |+++|++.+|++. ....+|.++||++++.+.+..+. ...+|+.. |.+.+++.++ +++..++++|+
T Consensus       337 ~----------p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~-f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       337 V----------PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTM-WLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             C----------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHH-HHHHHHHHHHHHHHHHHHhCCc
Confidence            5          6789999999996 66889999999999988765421 11257544 4444444444 44555678877


Q ss_pred             ccc
Q 021342          217 EDK  219 (314)
Q Consensus       217 ~~~  219 (314)
                      .+.
T Consensus       406 ~~~  408 (418)
T TIGR00889       406 HNA  408 (418)
T ss_pred             ccC
Confidence            543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.17  E-value=1.6e-08  Score=95.09  Aligned_cols=143  Identities=11%  Similarity=0.016  Sum_probs=85.3

Q ss_pred             ccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccc
Q 021342          152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNF  231 (314)
Q Consensus       152 ~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  231 (314)
                      +++++...+.......+|.++|+...+.+.++.     +|+.. |++..++.++..+..++++|+++++++.       +
T Consensus       128 ~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-----gw~~~-f~~~a~l~~~~~~~~~~~~~~~~~~~~~-------~  194 (390)
T TIGR02718       128 GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-----GQRPA-FLLVACVPLASLVCVLWLKDRAVASPEA-------P  194 (390)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CHHHH-HHHHHHHHHHHHHHHHHcCCCCcCcccc-------c
Confidence            345566666666666777777777666666554     48654 5555555555444445555433221110       0


Q ss_pred             cchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          232 YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       232 ~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      +    +..++..+.+|+|+.+......+......+..++..+.+..+..++.+++|..+.+.|....+.+....+|+.|-
T Consensus       195 ~----~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r  270 (390)
T TIGR02718       195 L----ARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR  270 (390)
T ss_pred             h----hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            0    011234456788877666655555545445555666655555568899999999998887777666667777653

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.16  E-value=3.2e-09  Score=98.40  Aligned_cols=227  Identities=14%  Similarity=0.077  Sum_probs=138.6

Q ss_pred             CccccccchhhhhHHHHHHHHHHHhhHhhhhhhcCCCChhHHH----HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHH
Q 021342           22 TPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTT   97 (314)
Q Consensus        22 n~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~----~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~   97 (314)
                      +.+...+|..+-.+++...|..+.....+...++++.++....    .++-.+.-++..++-+.+.||+|.|++..++.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            5557888888888888888988888777777776655554433    334445556666788999999999999999987


Q ss_pred             HHHH--HHHhh--hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHH
Q 021342           98 GYWL--FVAAN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG  173 (314)
Q Consensus        98 ~~~~--~~~~~--~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G  173 (314)
                      ...+  +....  -+++.+.+++.++++|++.+..-++. .+++.++          |++++|.++|++. ..++|..+-
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m-~~~s~~f----------P~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM-PNASFFF----------PKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehccc-ccccccC----------ChhhhhHHHHHhc-cccccHHHH
Confidence            7543  22222  34566799999999999999775544 3566665          7899999999998 888887665


Q ss_pred             HHHHHHHHcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCCccccccccccccccccchHH-HHHHHHHHhhcChhH
Q 021342          174 NLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDKGEKETADASVNFYSYLV-SLSKSITTLLADVRM  251 (314)
Q Consensus       174 ~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  251 (314)
                      .+++-.+....+.  ..|+.... +.....++ ++...+++.+.+..|.+.         ++.+ .++|   ...++++.
T Consensus       156 q~~~P~v~~~~g~--~~w~~~~~-i~~~~l~v~~v~~~~~~~d~p~~r~~~---------~~~~~~~~~---~v~~~~~~  220 (417)
T COG2223         156 QLVAPLVAVAFGF--LAWRNVAG-IYVVALAIAAVLAWLGMNDVPEHRASV---------KPQLPAQLK---AVFSNKDT  220 (417)
T ss_pred             HHHHHHHHHHHhh--HHHHHHHH-HHHHHHHHHHHHHHHHhCCChhhhccc---------cccchhHHH---HHhcCcch
Confidence            5554444332210  01543322 22233333 444445565543322111         0111 2233   35567777


Q ss_pred             HHHHHHHHHH-hHHHhhhhccccccc
Q 021342          252 LLIIPLFAYS-GLQQAFVWAEFTKEI  276 (314)
Q Consensus       252 lll~p~~~~~-g~~~~f~~~~~~~~~  276 (314)
                      +.+...++.+ |-+.+| ...+|.++
T Consensus       221 W~lsllY~~tFG~Fvgf-s~~l~~~~  245 (417)
T COG2223         221 WLLSLLYFATFGGFVGF-SAYLPMYL  245 (417)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            7776554433 333333 34444443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.11  E-value=1.2e-08  Score=92.97  Aligned_cols=228  Identities=10%  Similarity=0.066  Sum_probs=155.7

Q ss_pred             hhHhhhhhhcCCCChhHHH----HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHh
Q 021342           46 AAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYL  121 (314)
Q Consensus        46 ~~~~l~~~i~~~~~~g~~~----~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~  121 (314)
                      +...+.+++..|.++.+..    .++=.+++++.+++++++.+|+|.++.+..+++..++-.+.-...+.+.++.+-.+.
T Consensus        30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~  109 (395)
T COG2807          30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLA  109 (395)
T ss_pred             hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            3334455555455554433    345558999999999999999999999999998877666654344677788888999


Q ss_pred             hhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHH
Q 021342          122 GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLG  201 (314)
Q Consensus       122 G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~  201 (314)
                      |.|.+...+--...+-+.           ++++-+..+|+|....+.|..+++.+.--+.++.    .+|+..+. ....
T Consensus       110 G~gIav~nVLLPslIK~~-----------Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~----~gW~~aL~-~WAl  173 (395)
T COG2807         110 GAGIAVINVLLPSLIKRD-----------FPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS----GGWRGALG-FWAL  173 (395)
T ss_pred             HhhHHHHHHhhhHHHHhh-----------cccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----ccHHHHHH-HHHH
Confidence            999998655544444432           5789999999999999999999999888887765    25876432 2233


Q ss_pred             HHHHHHHHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccccccccc
Q 021342          202 VITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPAL  281 (314)
Q Consensus       202 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~l  281 (314)
                      .++++.+..  +|...+.+...    ...+       .++..+.+|+|.-+.+...+-..++..-...+++|+.+.+..+
T Consensus       174 ~allAl~~W--lPq~~r~~~~~----~~~~-------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~  240 (395)
T COG2807         174 LALLALLIW--LPQALREQAAS----IATK-------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL  240 (395)
T ss_pred             HHHHHHHHH--hhhcccccccc----cccc-------cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC
Confidence            334444333  44432211000    0000       0112246788877777665555556666677889999999999


Q ss_pred             ccchhhHHHHHHhhHhHHHHH
Q 021342          282 GVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       282 g~~~ig~~~~~~G~~~~i~~~  302 (314)
                      +..+.|.......+.++..++
T Consensus       241 sa~~aG~llsl~~l~~~~~~l  261 (395)
T COG2807         241 SAAEAGSLLSLMQLAQLPTAL  261 (395)
T ss_pred             CHHHhhhHHHHHHHHHHHHHH
Confidence            999999988888888877664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.10  E-value=3.8e-09  Score=99.39  Aligned_cols=136  Identities=16%  Similarity=0.108  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .+...+...++.++.+.+.||+|+|+.+..+..+..+.... ...++.+.+++..++.|++.+..++.......+..   
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~---  331 (399)
T PRK05122        255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV---  331 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---
Confidence            44556667778888999999999999998887766554433 24566667778889999999887766554444443   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                             ++++||+..+++.....+|..+|+.+.+.+.+..     +|+.. |+...++.+++.+...+++++
T Consensus       332 -------~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        332 -------PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-----GYPSI-FLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CHHHH-HHHHHHHHHHHHHHHHHhccc
Confidence                   6789999999999999999999998888776643     35443 444555555666555555553

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.10  E-value=1.1e-08  Score=96.49  Aligned_cols=134  Identities=13%  Similarity=-0.009  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      ++..+...+++++.+.++||+|||+.+..+.....+..... ..++...++..+++.+++.+...+....+..+..    
T Consensus       259 ~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~----  334 (393)
T PRK15011        259 GTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLM----  334 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            44455566778899999999999998887765544333222 3456666667888888877766554445555543    


Q ss_pred             hhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                             +++||++.+++....++|..+||++++.+.+..     +|+.. +.+..++.+++.+..+++||+
T Consensus       335 -------p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~  393 (393)
T PRK15011        335 -------PGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-----NYHAV-FWFALVMIIATLFCLLRIKDV  393 (393)
T ss_pred             -------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHH-HHHHHHHHHHHHHHHHhhcCC
Confidence                   357999999999999999999999999887653     36443 444455556666666666653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.07  E-value=5.6e-09  Score=98.41  Aligned_cols=135  Identities=16%  Similarity=0.029  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      ..+...+...++.++.+++.||+|||+.+..+.+...+.... ...++...++...++.|++.+...+...++..+..  
T Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  337 (406)
T PRK11551        260 VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFY--  337 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc--
Confidence            345566677788889999999999999988766554443333 24455556666777788877665555555555554  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL  213 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  213 (314)
                              |+++|++..|+......+|..+||.+.+.+.++..    ++ ...+.+...+.+++.++.+.+
T Consensus       338 --------p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        338 --------PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR----ST-VGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             --------chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC----ch-HHHHHHHHHHHHHHHHHHHHH
Confidence                    67899999999999999999999999988876432    23 333444444555555554444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.05  E-value=1.4e-08  Score=98.63  Aligned_cols=139  Identities=10%  Similarity=0.052  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh---h-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA---N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~---~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~  140 (314)
                      .....++..++++++++++||+|||++++++.+...+....   . ..++...+++++++.|++.+..+.....++.+.+
T Consensus       292 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~  371 (490)
T PRK10642        292 IIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMF  371 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            44555666777888999999999999998887654322221   1 1234566777888888877666555556666654


Q ss_pred             hhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                                |++.||+.+|..+.....+..++|.+.+.+....+    +|+...++ ..+.++++.+..+++||+++
T Consensus       372 ----------p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~----~~~~~~~~-~~~~~~i~~~~~~~~pes~~  434 (490)
T PRK10642        372 ----------PTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ----NLMMPAYY-LMVVAVIGLITGVTMKETAN  434 (490)
T ss_pred             ----------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CchHHHHH-HHHHHHHHHHHHHHhccccC
Confidence                      77899999997555555666778887776654321    35444333 34445555556667788654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.03  E-value=2.9e-08  Score=92.13  Aligned_cols=130  Identities=9%  Similarity=0.051  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc
Q 021342           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (314)
Q Consensus        69 ~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~  147 (314)
                      ......+.++.+++.||+|||+++.++.+...+..... ..++.+.++..+++.|++.+..++....+..+..       
T Consensus       245 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-------  317 (375)
T TIGR00899       245 AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLM-------  317 (375)
T ss_pred             HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence            33445566788999999999999888776554433332 4456677777888899988877665555555542       


Q ss_pred             CCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       148 ~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                          ++++++.++++....++|..+||.+++.+.+..     +|+. .|....++.+++.++..+++|
T Consensus       318 ----~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       318 ----PGRAGAATTLYTNTGRVGWIIAGSVGGILAERW-----SYHA-VYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             ----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchh-HHHHHHHHHHHHHHHHheecC
Confidence                356789999999999999999999998887654     3543 355555555666666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.02  E-value=1.5e-08  Score=95.22  Aligned_cols=132  Identities=14%  Similarity=0.105  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .+.......+++++.+.+.||+|+|+.+..+.....+..... ..++...+++..++.|++.+...+.....+.+..   
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---  331 (392)
T PRK12382        255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV---  331 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---
Confidence            344445566788889999999999999988887665544333 4566777777889999998877666555555543   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                             ++++||+..|++.....+|..+||.+.+.+.++.     +|+. .|....++.+++.++..+
T Consensus       332 -------~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-----g~~~-~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        332 -------PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-----GYPS-VFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchH-HHHHHHHHHHHHHHHHHh
Confidence                   6789999999999999999999999999887654     3654 355555555555555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.01  E-value=1.8e-08  Score=91.87  Aligned_cols=131  Identities=21%  Similarity=0.210  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhh-HHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKN-ALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~-~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .+.......++.++.+++.||+|||+ .+..+.....+..... ..++...+++..++.|++.+..++....++.+..  
T Consensus       217 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  294 (352)
T cd06174         217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA--  294 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhc--
Confidence            45555667778888899999999999 9988888776655543 5566777888999999999999888888888775  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                              |+++|++.++++......|..+|+.+.+.+.+..     +|+.. +++..++.+++.++.+
T Consensus       295 --------~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-----~~~~~-~~~~~~~~~i~~i~~~  349 (352)
T cd06174         295 --------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-----GYGGV-FLILAALALLAALLLL  349 (352)
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcchH-HHHHHHHHHHHHHHhe
Confidence                    6689999999999999999999999998887543     35433 4455555555555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.00  E-value=4.1e-08  Score=92.18  Aligned_cols=128  Identities=8%  Similarity=0.004  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      ++..+...++.++++.+.||+|+|+.+.++.+...+..... +.++.+.+++..++.|++.+..+++...++.+.     
T Consensus       247 ~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-----  321 (382)
T TIGR00902       247 GIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-----  321 (382)
T ss_pred             HHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            34444555556678899999999999999998887655544 678888888899999999999988866666543     


Q ss_pred             hhcCCCCccchhhHHHHHH-HHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          145 SNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~-~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                            |+++|++..+++. ....+|..+||++++.+.++.+     .  ..|....++++++.++..
T Consensus       322 ------~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-----~--~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       322 ------PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-----A--GTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             ------CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----H--HHHHHHHHHHHHHHHHHH
Confidence                  5678899999986 4678999999999999987642     2  335555666666655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.99  E-value=2.7e-08  Score=96.11  Aligned_cols=179  Identities=13%  Similarity=0.121  Sum_probs=128.9

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhhhhcC-CCChhHH----HHHHHHHHHHHHHhhHHHHHHhhchh--hHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSK--NALILGTT   97 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~-~~~~g~~----~~~~~~~~~~~~~~~~~~l~~~~G~k--~~l~~g~~   97 (314)
                      ++.|++...-++.+++..+.++...+...... +-+.+..    ..-+..++-.+|+++.+.+.||+|.|  ++++++.+
T Consensus       278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            67788888888888888887776644432221 1122221    12344566678888999999999999  88888888


Q ss_pred             HHHHHHH-hhh--------chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhh
Q 021342           98 GYWLFVA-ANL--------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS  168 (314)
Q Consensus        98 ~~~~~~~-~~~--------~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~  168 (314)
                      .+.+..+ +.+        .++.+.+++..++.|++.|..++..-++.++..          |+++.+.++|+|......
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li----------P~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI----------PPGREAEFFGLYAITGKA  427 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHH
Confidence            7744333 234        456677888899999999999999988999886          778889999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       169 g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                      +..+||++-+.+.+..+    +.|. -+....++.+++.++.++++.++.
T Consensus       428 ss~lGPll~g~i~~~tg----~~r~-g~~~l~~lf~~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  428 SSWLGPLLFGLITDATG----SQRY-GFLFLLVLFLIGLILLFFVDVEKG  472 (477)
T ss_pred             HHHHHHHHHHHHHHHhC----Cchh-HHHHHHHHHHHHHHHHhhccchhh
Confidence            99999999888877653    2232 244444555566666666665543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.99  E-value=4.3e-12  Score=121.37  Aligned_cols=142  Identities=17%  Similarity=0.163  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hch---hhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP---SWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~---~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      ...+..+++..+|++++|.++||+|||+++.++.+.+.+..+.. +.+   +++.++++|++.|++.|...+....|+.|
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E  129 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISE  129 (451)
T ss_pred             HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34678888889999999999999999999999999887766654 677   89999999999999999999999999999


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                      ..          |+++||+..+++.....+|..++.+++..+....  ....||.. ++...+.+++..+..+++||++
T Consensus       130 ~~----------~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~Wr~~-~~~~~~~~l~~~~~~~~~pESP  195 (451)
T PF00083_consen  130 IA----------PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS--DNWGWRIL-LIFGAIPSLLVLLLRFFLPESP  195 (451)
T ss_pred             cc----------cccccccccccccccccccccccccccccccccc--cccccccc-cccccccccccccccccccccc
Confidence            86          7789999999988888888888887765552221  12347653 2233333334444557789864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.97  E-value=2.3e-08  Score=92.26  Aligned_cols=110  Identities=11%  Similarity=-0.053  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchh--hhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS--WYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~--~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      .++..+...+++++.+++.||+|||+.+.++.+...+..+.. ..++  ...++...++.|++.+..++....++.+.. 
T Consensus       246 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-  324 (377)
T TIGR00890       246 VSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF-  324 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHh-
Confidence            455666777888899999999999999988887665544432 3332  223445667888888877666666677765 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                               ++++|++..|++.....+|..+||.+.+.+.++.
T Consensus       325 ---------~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~  358 (377)
T TIGR00890       325 ---------GPANSAANYGFLYTAKAVAGIFGGLIASHALTEI  358 (377)
T ss_pred             ---------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                     6689999999999999999999999998887654

>PRK03699 putative transporter; Provisional

Probab=98.96  E-value=4.1e-08  Score=92.49  Aligned_cols=140  Identities=11%  Similarity=0.024  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      ..++..+...++.++.+.++||+|+|+.+..+.....+..... ..++...+.+..++.|++.+..++....+..+..  
T Consensus       246 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--  323 (394)
T PRK03699        246 LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT--  323 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence            3466667888999999999999999998887665544322222 3455555556677888887766665444444332  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG  220 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  220 (314)
                               ++++++..+....+..+|..+||.+.+.+.+..     +++..++. ..++.+++..+..++++..+++
T Consensus       324 ---------~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-----g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  386 (394)
T PRK03699        324 ---------KVASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-----GLQAALLT-ANGLYAVVFVMCILLGFVSKHR  386 (394)
T ss_pred             ---------cCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-----Cchhhhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence                     244567788888888999999999998887654     35444333 3344444444444455544443

>PRK09669 putative symporter YagG; Provisional

Probab=98.96  E-value=9e-08  Score=91.72  Aligned_cols=109  Identities=10%  Similarity=0.004  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHh----hch-hhHHHHHHHHHHHHHHh-hhchh------hhHHHHHHHHhhhhhhhhhcc
Q 021342           64 SLGILYTSFTCFSLVASLVVRV----LGS-KNALILGTTGYWLFVAA-NLFPS------WYTMVPASLYLGFAASIIWVG  131 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~----~G~-k~~l~~g~~~~~~~~~~-~~~~~------~~~l~~~r~l~G~g~~~~~~~  131 (314)
                      ...+.-+..++..++.|.++||    +|| |+.++.+.+.+++.... +..|+      ....++..++.+.+.+...+.
T Consensus        50 i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip  129 (444)
T PRK09669         50 MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVP  129 (444)
T ss_pred             HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcch
Confidence            3556667788888999999998    776 56666776666554433 33332      233444555666666665555


Q ss_pred             chhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          132 EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                      ..+..+++++         +++||++..+.......+|..+++.+...+.
T Consensus       130 ~~al~~~~t~---------~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~  170 (444)
T PRK09669        130 YCAMPGAITN---------DPRERHSLQSWRFALSFIGGLIVSVIALPLV  170 (444)
T ss_pred             HHHhHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777652         4588999888888888888888877654443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.95  E-value=1.2e-07  Score=91.51  Aligned_cols=106  Identities=10%  Similarity=-0.020  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHH----hhchhhHHHHHHHHH-HHHHHhh-hchhhhHHH------------HHHHHh-----
Q 021342           65 LGILYTSFTCFSLVASLVVR----VLGSKNALILGTTGY-WLFVAAN-LFPSWYTMV------------PASLYL-----  121 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~----~~G~k~~l~~g~~~~-~~~~~~~-~~~~~~~l~------------~~r~l~-----  121 (314)
                      ..+.-+...+.+++.|.++|    |+|||+.++++.... .+..... +.++...++            +...+.     
T Consensus        45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll  124 (477)
T TIGR01301        45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL  124 (477)
T ss_pred             HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence            44555667777888899999    599999988754333 2222221 323321110            012222     


Q ss_pred             hhhhhhhhccchhhHhHhhhhhhhhcCCCCccch--hhHHHHHHHHHhhhhHHHHHHHHHH
Q 021342          122 GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI--GSFNGEFWGMFASHQFVGNLITLAV  180 (314)
Q Consensus       122 G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r--g~~~~~~~~~~~~g~~~G~li~~~i  180 (314)
                      .++.....+...++++|..          |+++|  +.+.+++....++|.++|+.+++..
T Consensus       125 d~~~n~~~~p~rALiaDl~----------p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLT----------GGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHhccccc----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445445556666665          44433  6789999999999999999998865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.93  E-value=2.8e-08  Score=93.46  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=93.0

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcC
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~  148 (314)
                      +...++.++.+.+.||+|||+.+..+.....+..+.. ..++.+.+++.+++.|++.+...+...+++.+..        
T Consensus       269 l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------  340 (408)
T PRK09874        269 VAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS--------  340 (408)
T ss_pred             HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC--------
Confidence            4444566677899999999999998887665544433 4466677778899999999987766655555443        


Q ss_pred             CCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       149 ~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                        ++++||+.++++.....+|..+||++++.+.+..     +|++ .|++..++.+++.++.++
T Consensus       341 --~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-----g~~~-~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        341 --SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-----GFRA-VFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             --CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-----chhH-HHHHHHHHHHHHHHHHHH
Confidence              5688999999999999999999999999887654     3544 455556666665555543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.92  E-value=6.5e-08  Score=91.76  Aligned_cols=138  Identities=16%  Similarity=0.187  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      +...++..++.++.+++.||.++++.+..+.++..+..+.. ..++...+++..++.|++.+...+...+++.+..    
T Consensus       266 ~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----  341 (417)
T PRK10489        266 AAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQT----  341 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----
Confidence            44445566677788889998888888877776655444333 5567766677788889888776555555555553    


Q ss_pred             hhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                            |++.||+.+|++....++|..+||.+.+.+.+..+     .+..+++...+..+++++....+++.++
T Consensus       342 ------p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        342 ------PDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-----PVASASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             ------CHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-----hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence                  66889999999999999999999999998876542     3232222323333344555555666543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.90  E-value=3.2e-07  Score=86.41  Aligned_cols=266  Identities=12%  Similarity=0.076  Sum_probs=132.0

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhhh-hcCCCChhHHHHHHHHHHHHH----HHhhHHHHHHhhchhhHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTISLGILYTSFTC----FSLVASLVVRVLGSKNALILGTTGY   99 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~-i~~~~~~g~~~~~~~~~~~~~----~~~~~~~l~~~~G~k~~l~~g~~~~   99 (314)
                      ++.++...++..++++|.++.......+. +++..++.....++.+.+.++    .+++.|.++||+|.|+-++......
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l   83 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL   83 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence            55678888888888888876655533322 111234444445666655544    4455678899999777655443222


Q ss_pred             ----HHHHHhhhchhh-hHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHH
Q 021342          100 ----WLFVAANLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (314)
Q Consensus       100 ----~~~~~~~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~  174 (314)
                          +.+....+.|-. ...+.+.++.|+..+..+.+.......+.+|.++..+.  |--|.|.-      .++|.+++.
T Consensus        84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~f--eYG~~R~w------GSig~ai~s  155 (412)
T PF01306_consen   84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGF--EYGRARMW------GSIGFAIAS  155 (412)
T ss_dssp             HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS---HHHHHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcC--CcchHHHH------hhHHHHHHH
Confidence                222221122211 12233445566666666666656666666665555442  22333333      367778888


Q ss_pred             HHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccc-ccccccccccccchHHHHHHHHHHhhcChhHHH
Q 021342          175 LITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG-EKETADASVNFYSYLVSLSKSITTLLADVRMLL  253 (314)
Q Consensus       175 li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll  253 (314)
                      .++|.+....      . ...+++..+.+++..++.++.+++..++ +.++.+.  .+++  +..+|+..+++|+|+++.
T Consensus       156 ~~~G~L~~i~------p-~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~l~k~~~fw~  224 (412)
T PF01306_consen  156 LLAGILFNIN------P-NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG--AKKD--KVSLKDVLSLFKMRNFWF  224 (412)
T ss_dssp             HHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS--S--------HHHHHHHTTSHHHHH
T ss_pred             HHhheeeeeC------c-cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc--cCCC--CCcHHHHHHHhcchhHHH
Confidence            8877766421      1 2234444444443333334443222111 1110000  1111  123566778999999988


Q ss_pred             HHHHHHHH-hHHHhhh---hccccccccccccccchhhHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          254 IIPLFAYS-GLQQAFV---WAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       254 l~p~~~~~-g~~~~f~---~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      +...+..+ +.+..|-   ...+...+.+...|.+..|+...+.=+.+++ -..+..++++
T Consensus       225 ~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~-~m~~~p~li~  284 (412)
T PF01306_consen  225 FVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEAL-MMFFSPWLIN  284 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHH-HHHHHHHHHH
Confidence            77544333 3444432   2223333345556677777776665555555 3334444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.89  E-value=2e-07  Score=87.92  Aligned_cols=138  Identities=8%  Similarity=-0.029  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hch-hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .++..+...+++++.+.+.||+|||+.+..+..+..+..... ..+ +...+.  -.+.|++.+...+.......+..  
T Consensus       246 ~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~--  321 (393)
T PRK09705        246 LALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHS--  321 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhc--
Confidence            456666777888899999999999999888876554433332 222 222222  24567777765554333333322  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCcc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEED  218 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~  218 (314)
                             ++++++|+.+|.......++..+||.+.+.+.+..+    ++ ...|.+..++.+++.+. ..+.||++.
T Consensus       322 -------~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        322 -------VQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG----NY-LMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Cc-hHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                   245789999999999999999999999998877643    23 33344444444444333 344555544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.87  E-value=1.2e-07  Score=91.78  Aligned_cols=136  Identities=6%  Similarity=-0.080  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhh-chhhHHHHHHHHHHHHHHhh-hch-hhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~-G~k~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ...+.......++++++|+++||+ |||+++++|.+...+..... ..+ +...++.+-.+.++|.|...+...+++++.
T Consensus        49 ~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~el  128 (493)
T PRK15462         49 ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGEL  128 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHH
Confidence            335566667778889999999999 99999999998776543322 211 112233333445566666656666778877


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                      .++        ++++|+.++++++...++|..+||++.+.+.++.     +|++. |.+..+..+++++.+++
T Consensus       129 fp~--------~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-----Gw~~~-F~iaaigm~l~li~~~~  187 (493)
T PRK15462        129 YEP--------TDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-----SWAMG-FGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             CCC--------CCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-----ChHHH-HHHHHHHHHHHHHHHHH
Confidence            521        2247899999999999999999999999987654     47654 44433333444444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.87  E-value=9.2e-08  Score=90.85  Aligned_cols=135  Identities=14%  Similarity=0.097  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .++..+...++.++++++.||+|+|+.+..+.+++.+..... +.++.+.++..+++.|++.+...+....++.+..   
T Consensus       268 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---  344 (420)
T PRK09528        268 NSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF---  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            345556677888999999999999999998888777654443 5677888888899999988776655555555543   


Q ss_pred             hhhcCCCCccchhhHHHH-HHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccC
Q 021342          144 ASNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRK  215 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~-~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~  215 (314)
                             +++.++...+. +.....+|.++||.+.+.+.+..     +|+.. |....++.+++.++. +.+++
T Consensus       345 -------~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-----G~~~~-f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        345 -------DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-----GFQGT-YLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             -------CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-----CchHH-HHHHHHHHHHHHHHHHHHhcC
Confidence                   45677766544 66678899999999999987654     36544 444444444444333 34444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.85  E-value=7.6e-07  Score=86.16  Aligned_cols=228  Identities=11%  Similarity=0.051  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHH----hhch-hhHHHHHHHHHHHHHHhhhc-hh------hhHHHHHHHHhhhhhhhhhccc
Q 021342           65 LGILYTSFTCFSLVASLVVR----VLGS-KNALILGTTGYWLFVAANLF-PS------WYTMVPASLYLGFAASIIWVGE  132 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~----~~G~-k~~l~~g~~~~~~~~~~~~~-~~------~~~l~~~r~l~G~g~~~~~~~~  132 (314)
                      +.+.-+.-++..++.|.++|    |+|| |+.++.|.+..++.....+. |+      +..+++.-++.+++.+...+..
T Consensus        48 ~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~  127 (473)
T PRK10429         48 FLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPF  127 (473)
T ss_pred             HHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchH
Confidence            45556677888888999999    6698 77777787777655433322 21      2233445566677777777777


Q ss_pred             hhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCC--CCCchhHHHHHHHHHHHHHHHHH
Q 021342          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG--STSGTTLLFIVFLGVITLGTILM  210 (314)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~  210 (314)
                      .+..+++++         +++||.+..++-....++|..+++.+...+....+..  ..+|+. ..++..++.++..+..
T Consensus       128 ~al~~~lt~---------~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~i~~~~~~~~~~~~  197 (473)
T PRK10429        128 WSLVPTLTL---------DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQM-FTLVLIAFFIVSTIIT  197 (473)
T ss_pred             HhhhHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH-HHHHHHHHHHHHHHHH
Confidence            777777762         5689999888755556666555554433332211100  012322 1222223222222222


Q ss_pred             H-hccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccc-cchhhH
Q 021342          211 C-FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VSGVGG  288 (314)
Q Consensus       211 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg-~~~ig~  288 (314)
                      + ..+|.....+.+   .+.+++.+.++.++.   .+++|.++.+....+..........+..+ +|....++ ....+.
T Consensus       198 ~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~---~~~n~~~~~ll~~~~~~~~~~~~~~~~~~-y~~~y~~~~~~~~~~  270 (473)
T PRK10429        198 LRNVHEVYSSDNQV---SAEGSHLTLKDIVAL---IYKNDQLSCLLGMALAYNIASNIINGFAI-YYFTYVIGDADLFPY  270 (473)
T ss_pred             HcCceecCCccccc---cccccCCCHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHhhhee-eEEEEECCCHHHHHH
Confidence            2 345532111100   001122344544443   45777776665544444343343333333 33332233 344556


Q ss_pred             HHHHHhhHhHHHHHHHHHHHHh
Q 021342          289 AMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       289 ~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      .+.+.++..++++. +.+++.|
T Consensus       271 ~~~~~~i~~ii~~~-~~~~l~~  291 (473)
T PRK10429        271 YLSYAGAANLVTLI-LFPRLVK  291 (473)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHH
Confidence            66666666666543 5566654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.83  E-value=9e-09  Score=96.27  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=107.5

Q ss_pred             ccccchhhhhHHHH-HHHHHHHhhH-hhhhhh------cCC-------CChhHHHHHHHHHHHHHHHhhHHHHHHhhchh
Q 021342           25 NYTRDVHILSCAFL-LIFLAYGAAQ-NLETTV------NTE-------GNLGTISLGILYTSFTCFSLVASLVVRVLGSK   89 (314)
Q Consensus        25 ~~~~~~~~l~~~~~-~~~~~~~~~~-~l~~~i------~~~-------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k   89 (314)
                      ..||++..+.++-+ ++..+|+... ++..++      +.+       .+.-....++.+++..+||++.|++.|++|||
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            46666666665544 3345665432 444333      111       11223345777888899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhh-hc-----h--hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHH
Q 021342           90 NALILGTTGYWLFVAAN-LF-----P--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGE  161 (314)
Q Consensus        90 ~~l~~g~~~~~~~~~~~-~~-----~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~  161 (314)
                      +++...++...+.++.. +.     +  -..++...|++.|+|.|.-+|..+++.++.+          .++.||...+.
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~a----------n~~~RGa~iaa  184 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESA----------NKKTRGAFIAA  184 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhh----------hhccccceeEE
Confidence            99999998887776532 32     1  2467889999999999999999998888887          45899999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHH
Q 021342          162 FWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       162 ~~~~~~~g~~~G~li~~~i~  181 (314)
                      ..+.+..|...|.+++..+.
T Consensus       185 vFa~Qg~GilaG~ivt~Iv~  204 (538)
T KOG0252|consen  185 VFAMQGFGILAGGIVALIVS  204 (538)
T ss_pred             EEEecchhHhhccHHHHHHH
Confidence            99999999888888776654

>TIGR00898 2A0119 cation transport protein

Probab=98.82  E-value=1.3e-07  Score=91.96  Aligned_cols=133  Identities=14%  Similarity=0.049  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhh--hHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhh
Q 021342           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSW--YTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (314)
Q Consensus        69 ~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~--~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~  145 (314)
                      .+....+.++.+.+.||+|||+.+.++.+..++..+.. +.++.  ...+...++.+++.+..++....+..|..     
T Consensus       365 ~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----  439 (505)
T TIGR00898       365 GLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY-----  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence            34455677788999999999999999887765544432 33322  33444556667777766666666666664     


Q ss_pred             hcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc
Q 021342          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK  219 (314)
Q Consensus       146 ~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  219 (314)
                           |++.|+.++|+......+|.++||.+.+ +...      ++ ...++++.++.+++.++.+++||++.+
T Consensus       440 -----p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~------~~-~~~~~~~~~~~~~~~~~~~~lpet~~~  500 (505)
T TIGR00898       440 -----PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK------WL-FLPLVLFGGLALLAGILTLFLPETKGV  500 (505)
T ss_pred             -----cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH------HH-hhHHHHHHHHHHHHHHHHHcCcCCCCC
Confidence                 6788999999999999999999999887 4321      12 223455556666666667788887543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.82  E-value=1.2e-06  Score=83.08  Aligned_cols=225  Identities=18%  Similarity=0.055  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhc-hhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLG-SKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G-~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .++..+.-.+++++++.++||.+ +|+.+.+..+.-++.... ...++++.+++.-++..+...+.    ......++-+
T Consensus        43 ~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~----~pl~dsi~~~  118 (400)
T PF03825_consen   43 LAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPT----MPLSDSIALS  118 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccH----HHHHHHHHHH
Confidence            45555666677788899999987 577776655544332222 24456666665555555554433    2223333322


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHH-HHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI-TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGE  221 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  221 (314)
                      +.++++..-.+.|-        -.++|.+++.+. +..+....+   .+.....+.+..+.+++.....+.+|+++++++
T Consensus       119 ~~~~~~~~YG~iRl--------wGSiGf~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~  187 (400)
T PF03825_consen  119 YLGDRGKDYGRIRL--------WGSIGFIVAALAFGGLLGGYLG---ISGTSLIFYIAAILSLLLAGFALFLPKTPPKRS  187 (400)
T ss_pred             HcccccCCCCcchh--------hhhHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            22222222223332        234555555433 222222211   011112233333333333344456776543222


Q ss_pred             cccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccc-cccchhhHHHHHHhhHhHHH
Q 021342          222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPA-LGVSGVGGAMAVYGAFDAIF  300 (314)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~-lg~~~ig~~~~~~G~~~~i~  300 (314)
                      .+++    .++    +..++..+++|+|+++......+..+...+.+++.++.+..+.. ...+.+|..+++.-++++. 
T Consensus       188 ~~~~----~~~----~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~-  258 (400)
T PF03825_consen  188 AKES----VKK----LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIP-  258 (400)
T ss_pred             cCCC----ccc----ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHH-
Confidence            1110    011    11233457899999988888888888888888888876654433 3356667777665556655 


Q ss_pred             HHHHHHHHHhhcC
Q 021342          301 LVELLLRWLYFSG  313 (314)
Q Consensus       301 ~~~~l~~~~~~~~  313 (314)
                      -....+|++|--|
T Consensus       259 ~f~~~~~~~~r~g  271 (400)
T PF03825_consen  259 FFFFSGRFLKRFG  271 (400)
T ss_pred             HHHHHHHHHHhcC
Confidence            5557777776544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.80  E-value=3.4e-07  Score=87.43  Aligned_cols=106  Identities=21%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhch-hhHHHHHHHHH----HHH-HHhhhch-hhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGS-KNALILGTTGY----WLF-VAANLFP-SWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~-k~~l~~g~~~~----~~~-~~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      .+..-++-+++++..+.-.+|.|. |+-++.|.+..    .+| .+.+..+ +.+.++.+|++.|+|.|... ..-+|++
T Consensus        77 iaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a  155 (488)
T KOG2325|consen   77 IAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIA  155 (488)
T ss_pred             HHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHH
Confidence            455666777777777777888884 55455555443    334 2223334 67888899999999987642 2445666


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                      +.+          ..++|.++++.....+.+|.++||.+.....
T Consensus       156 ~~s----------~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  156 DAS----------TVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             hcc----------CccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            654          4578999999888888899999998876554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1.1e-07  Score=84.12  Aligned_cols=175  Identities=14%  Similarity=0.118  Sum_probs=108.8

Q ss_pred             chhhhhHHHHHHHHHHHhhHhhh-----hhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHH
Q 021342           29 DVHILSCAFLLIFLAYGAAQNLE-----TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (314)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~l~-----~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~  103 (314)
                      .++++.+.+++++.+......+.     +..+-+........+..|...++.+.+.+.++||+|++...+.+.....+..
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~  344 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG  344 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence            34455555666666655544333     3333333333334788999999999999999999999998888776544322


Q ss_pred             HhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          104 AANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       104 ~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                      =+.+.-+...=+.+..+.|+..+.+-.+--..++...          ||++.|++.|......++|..+-|++.+.+..+
T Consensus       345 H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~v----------pE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  345 HSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLV----------PEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             hhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhC----------CHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            2222222222234556778777653222222233332          678999999999999999999999999998766


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                      .  ++..|-..+|++...+++..+.+.+.+.+
T Consensus       415 ~--g~y~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  415 D--GSYDNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             C--CchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence            4  33456555555544455555544454443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.78  E-value=6.4e-07  Score=84.03  Aligned_cols=108  Identities=6%  Similarity=-0.011  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      ++......+..++.+.+.||+|+|+.+..+.+...+..+. ...++.+.+++..++.|++.+..++....++.+.     
T Consensus       247 ~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-----  321 (382)
T PRK11128        247 SLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-----  321 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence            3444555666678899999999999999988877664443 3567778888899999999988766655554443     


Q ss_pred             hhcCCCCccchhhHHHHHH-HHHhhhhHHHHHHHHHHHcCC
Q 021342          145 SNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~-~~~~~g~~~G~li~~~i~~~~  184 (314)
                            +++++++..+.+. .....|..+||++++.+.+..
T Consensus       322 ------~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        322 ------PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             ------CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  3456788888876 445678899999999987654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.77  E-value=2.7e-07  Score=89.07  Aligned_cols=140  Identities=14%  Similarity=-0.017  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHH--Hhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV--AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~--~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ...++..++..++++++|+++||+|||+.++.+........  ... ..++...+++.+++.|++........+....+.
T Consensus       298 ~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  377 (467)
T PRK09556        298 NTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGF  377 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence            34556667788999999999999999988766543332211  111 223455565677777765432222222333444


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhh-hhHHHHHHHHHHHcCCC-------CCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAVLKDDK-------GGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~G~li~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      .          |+++||.+.|+.....++ |..++|.+.+.+.+...       ....+|+.. |.+..++.+++.+..+
T Consensus       378 ~----------p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~-f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        378 V----------PKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGT-FAALDIAAIGCICLMA  446 (467)
T ss_pred             c----------chhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHH-HHHHHHHHHHHHHHHH
Confidence            3          678999999999888886 77899998888876100       002357544 4445555666655555


Q ss_pred             hc
Q 021342          212 FL  213 (314)
Q Consensus       212 ~l  213 (314)
                      ++
T Consensus       447 ~~  448 (467)
T PRK09556        447 IV  448 (467)
T ss_pred             HH
Confidence            44

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.77  E-value=9.4e-08  Score=91.14  Aligned_cols=228  Identities=11%  Similarity=-0.001  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHH----hhch-hhHHHHHHHHHHHHHHhhh-c-h-------hhhHHHHHHHHhhhhhhhhhc
Q 021342           65 LGILYTSFTCFSLVASLVVR----VLGS-KNALILGTTGYWLFVAANL-F-P-------SWYTMVPASLYLGFAASIIWV  130 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~----~~G~-k~~l~~g~~~~~~~~~~~~-~-~-------~~~~l~~~r~l~G~g~~~~~~  130 (314)
                      ..+.-+..++..++.|.++|    |+|| |+.+++|.+..++.....+ . |       ....+++.-++..++......
T Consensus        43 ~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i  122 (428)
T PF13347_consen   43 LLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQI  122 (428)
T ss_pred             HHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccC
Confidence            33444566777778888999    8996 4555567777666444433 2 3       112235566667888887777


Q ss_pred             cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCC--CchhHHHHHHHHHHHHHHH
Q 021342          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGST--SGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  208 (314)
                      ...+...+..+         +++||.+..+.-......|..+.+.+...+....++.+.  +|++..+ +.+++.++..+
T Consensus       123 ~~~al~~~lt~---------~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~-v~~iv~~v~~~  192 (428)
T PF13347_consen  123 PYNALIPELTP---------DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL-VLAIVGLVFFL  192 (428)
T ss_pred             chhhcCccccc---------cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH-HHHHHHHHHhh
Confidence            76777777752         457899888877666777776555555554443322211  4554333 33333333333


Q ss_pred             H-HHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccccc-hh
Q 021342          209 L-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS-GV  286 (314)
Q Consensus       209 l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~-~i  286 (314)
                      + .+..+|++++.++      ..++.+.++.+++   .+++|.++.+.-..+...+......+.++ +|....+|.. ..
T Consensus       193 i~~~~~ke~~~~~~~------~~~~~~~~~~~~~---~~~nr~~~~l~~~~~~~~~~~~~~~~~~~-y~~~~vl~~~~~~  262 (428)
T PF13347_consen  193 ITFFFVKERSVEVTE------QEKKISLRDSLRS---LFRNRPFRILLLAFFLQWLAFALMNTFLP-YYFTYVLGNEGLI  262 (428)
T ss_pred             hhhheeeeccccccc------cccccccccchhh---hcccchHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHhcCchhh
Confidence            3 3446662111111      1123344444443   56777777666555555444444443333 3333334433 44


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHhhcC
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLYFSG  313 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~~~~  313 (314)
                      +..+.+..+...++. .+..++.|--|
T Consensus       263 ~~~~~~~~~~~~v~~-~~~~~l~~r~g  288 (428)
T PF13347_consen  263 SIFMLIFFVASIVGS-PLWGRLSKRFG  288 (428)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHcc
Confidence            455555555555533 35566666443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.76  E-value=1.5e-06  Score=83.58  Aligned_cols=218  Identities=17%  Similarity=0.139  Sum_probs=135.7

Q ss_pred             HHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhh--hhhccchhhHhHhhhhhhhhcCCC
Q 021342           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAAS--IIWVGEGTYLTAAALSHASNHKLH  150 (314)
Q Consensus        73 ~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~--~~~~~~~~~i~~~~~~~~~~~~~~  150 (314)
                      .+...+.|.++|++|||..+....++..+-........++.++    +.|+..+  ..+....+|++|++          
T Consensus        76 ~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a~vadis----------  141 (463)
T KOG2816|consen   76 LISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFAYVADIS----------  141 (463)
T ss_pred             HHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhhheeecc----------
Confidence            3445567889999999999999988766555554444444433    4444443  34455667777775          


Q ss_pred             CccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCccccccc-ccc--
Q 021342          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKE-TAD--  226 (314)
Q Consensus       151 ~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~-~~~--  226 (314)
                      .+++|....|+....+..+..+||.+++.+.+..+      ....+.+..+..+++.+.. +++||+..+++++ .+.  
T Consensus       142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~------~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~  215 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG------IALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE  215 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC------chHHHHHHHHHHHHHHHHHhhccccccCccccccccccc
Confidence            56799999999999999999999999998877643      1333555556656655544 6788876654433 111  


Q ss_pred             cccc--ccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhc-ccccccc--ccccccchhhHHHHHHhhHhHHHH
Q 021342          227 ASVN--FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWA-EFTKEIV--TPALGVSGVGGAMAVYGAFDAIFL  301 (314)
Q Consensus       227 ~~~~--~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~-~~~~~~~--~~~lg~~~ig~~~~~~G~~~~i~~  301 (314)
                      ....  ......+..+...+.-.++..+.+.+..++.-.....-.. ..+ .|.  ...++.++.+...+..+....+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~-~yl~~~f~w~~~~~s~~~~~~~~~~~i~~  294 (463)
T KOG2816|consen  216 LTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLL-LYLKAKFGWNKKEFSDLLSLVSILGIISQ  294 (463)
T ss_pred             cCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEE-EEEeeecCcCHHHHHHHHHHHHHHHHHHH
Confidence            0000  0111122233333333455666666655555444333223 221 221  246889999999999999999989


Q ss_pred             HHHHHHHHhh
Q 021342          302 VELLLRWLYF  311 (314)
Q Consensus       302 ~~~l~~~~~~  311 (314)
                      ++++..+.+-
T Consensus       295 l~~~~~l~~~  304 (463)
T KOG2816|consen  295 LLLLPLLSSI  304 (463)
T ss_pred             HHHHHHHHHH
Confidence            8877666553

>PRK03545 putative arabinose transporter; Provisional

Probab=98.76  E-value=1e-06  Score=82.73  Aligned_cols=131  Identities=14%  Similarity=-0.046  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHH-hhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~-~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .++......+++++.+.+.||+|+|.......+.-..... ....++...+++..++.|++.+..-+.....+.+.    
T Consensus       247 ~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~----  322 (390)
T PRK03545        247 LLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKL----  322 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHh----
Confidence            4455566677888899999999988754433322222212 22345666777788888888765433333333332    


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                             .+++|++++|++....++|..+||++++.+.++.     +++.. |.+...+.+++.+....
T Consensus       323 -------~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-----g~~~~-~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        323 -------APDATDVAMALFSGIFNIGIGAGALLGNQVSLHL-----GLSSI-GYVGAALALAALVWSIL  378 (390)
T ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ChhHH-HHHHHHHHHHHHHHHHH
Confidence                   2468899999999999999999999999988765     35433 44555555565555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.75  E-value=2.5e-07  Score=88.05  Aligned_cols=139  Identities=16%  Similarity=0.090  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhh------ch------hhhHHHHHHHHhhhhhhh-h
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL------FP------SWYTMVPASLYLGFAASI-I  128 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~------~~------~~~~l~~~r~l~G~g~~~-~  128 (314)
                      .....+..+...++.+++++++||+|||+.+.++.+...+......      .+      +...+....+ .+.+.+. .
T Consensus       322 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  400 (481)
T TIGR00879       322 FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL-FIAFFAMGW  400 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH-HHHHHHccc
Confidence            3344566677778889999999999999999888765544322211      11      2222322323 2333332 2


Q ss_pred             hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021342          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                      .+....++.+..          |+++|++.+++.....++|.+++|.+.+.+..+.     +|++. |++..++++++.+
T Consensus       401 ~~~~~~~~~~~~----------p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-----~~~~~-f~~~~~~~~~~~i  464 (481)
T TIGR00879       401 GPVPWVIVSEIF----------PLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-----GVGGV-FIFFGGLNVLGLI  464 (481)
T ss_pred             cCeehhhhhccC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----Cccce-ehhHHHHHHHHHH
Confidence            233444556654          6789999999999999999999999988776653     35433 4445555555554


Q ss_pred             HH-HhccCCc
Q 021342          209 LM-CFLRKEE  217 (314)
Q Consensus       209 l~-~~l~~~~  217 (314)
                      +. ++.||++
T Consensus       465 ~~~~~~~~~~  474 (481)
T TIGR00879       465 FVYFFLPETK  474 (481)
T ss_pred             HHheecccCC
Confidence            44 4456554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.74  E-value=6.5e-07  Score=83.92  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      .++......+++++.+.+.||+|+|+++..+.....+..+... +. ...+.+.++.|++.....+.....+.+..    
T Consensus       241 ~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~----  314 (381)
T PRK03633        241 MALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAMAPALFILGAAGFTLYPVAMAWACEKV----  314 (381)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccC----
Confidence            4556667778888999999999999999888777665433322 22 23334667788876665555444444432    


Q ss_pred             hhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                            ++++++...+.+...+++|..+||.+++.+.++.
T Consensus       315 ------~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~  348 (381)
T PRK03633        315 ------EHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY  348 (381)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  4567777788888889999999999999887754

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.74  E-value=2.1e-07  Score=86.63  Aligned_cols=177  Identities=12%  Similarity=0.124  Sum_probs=126.4

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhhhhcC-CCChhHHHH----HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~-~~~~g~~~~----~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~   99 (314)
                      ++++|+.+.-++-+++-...++...+...... +.+++...+    -....+-.+++++.|.+.||+|.|+++..+.+.+
T Consensus       249 ~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~  328 (438)
T COG2270         249 RGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVIL  328 (438)
T ss_pred             hcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHH
Confidence            56678888888888887777776655544433 334444332    2344566788899999999999999999999888


Q ss_pred             HHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHH
Q 021342          100 WLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (314)
Q Consensus       100 ~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~  178 (314)
                      .+..+. .+......+.+...+.|...|+.+...-.|.++..          |+++-++++|+|......++..||.+-+
T Consensus       329 ~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv----------p~~k~~~fFglyaltgra~S~~gp~lv~  398 (438)
T COG2270         329 SIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLV----------PKGKEGRFFGLYALTGRAASFLGPFLVA  398 (438)
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC----------CCccccceeehhhhhhhHHHHHHHHHHH
Confidence            654443 34444555556779999999999988888888886          6678899999999999999999999987


Q ss_pred             HHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          179 AVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       179 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                      .+.+-.+    +-|.- +...+.+-.++.++...+|++
T Consensus       399 v~t~iTg----~~r~g-~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         399 VITQITG----SSRAG-VLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHhc----chhhH-HHHHHHHHHhhHhhEEeecCC
Confidence            7776543    22322 333334444555655666665

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.71  E-value=5.9e-06  Score=77.55  Aligned_cols=229  Identities=15%  Similarity=0.041  Sum_probs=119.8

Q ss_pred             HHHHH-HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-h--hch----hhh--HHHHHHHHhhhhhhhhhccchh
Q 021342           65 LGILY-TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N--LFP----SWY--TMVPASLYLGFAASIIWVGEGT  134 (314)
Q Consensus        65 ~~~~~-~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~--~~~----~~~--~l~~~r~l~G~g~~~~~~~~~~  134 (314)
                      ++++| .++....+.+-++.||+|-|.+..++...-.+-... .  ..+    .+.  ....+..+.+.+.-.....-.-
T Consensus        84 lsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPsk  163 (480)
T KOG2563|consen   84 LSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSK  163 (480)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccH
Confidence            34444 566667777889999999999999999876553332 1  122    233  4445555555555443322222


Q ss_pred             hHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC-CCCCCchh-HHHHHHHHHHHHHHHHHHh
Q 021342          135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTT-LLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       135 ~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~  212 (314)
                      ..+.++          +++||..+..+=.....+|.++|.++.-.+..+.. ..+.+|.. .++....+.+.+.+.+..+
T Consensus       164 iA~~WF----------~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~  233 (480)
T KOG2563|consen  164 IAAVWF----------PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLF  233 (480)
T ss_pred             HHHhhC----------CcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333          67999999988888888999999998877776552 11222321 1122222222222222222


Q ss_pred             c-cCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHH-HHHhHHHhhhhccc----cccccccccccchh
Q 021342          213 L-RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF-AYSGLQQAFVWAEF----TKEIVTPALGVSGV  286 (314)
Q Consensus       213 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~-~~~g~~~~f~~~~~----~~~~~~~~lg~~~i  286 (314)
                      . +++++.+........  .+.++.   +++.++++++.+.+++..+ +-.|...+.+...-    ++.|..  .-..++
T Consensus       234 ~~~~~P~tPps~s~~~~--~~~~f~---~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~--~~aG~i  306 (480)
T KOG2563|consen  234 VFTKKPPTPPSASQAAL--QDASFP---KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEG--VFAGYI  306 (480)
T ss_pred             hcCCCCCCCCchhHhhh--hcCcHH---HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCc--cccchh
Confidence            2 221111100000000  012233   4556789999887766433 22333333222111    222211  234566


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      |..+++.|...++.+...+=|+-|
T Consensus       307 g~l~iv~Gmlga~~~gii~Dktk~  330 (480)
T KOG2563|consen  307 GALMIVAGMLGALASGIIADKTKK  330 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhh
Confidence            778888888777766555544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.70  E-value=1.1e-06  Score=81.13  Aligned_cols=129  Identities=13%  Similarity=0.053  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhH--H------HHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNA--L------ILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTY  135 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~--l------~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~  135 (314)
                      .++..+...++.++.++++||+|||+.  .      ..+.+...+.... ...++....+....+.+++.+ ..+...++
T Consensus       257 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  335 (399)
T TIGR00893       257 ASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWAL  335 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHH
Confidence            455566677888899999999999961  1      1111111111111 112233344333334444443 55666666


Q ss_pred             HhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342          136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (314)
Q Consensus       136 i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (314)
                      +.+..          |+++|++.+|++.....+|..+||.+.+.+.+..+    +|+. .|++..++.+++.+.
T Consensus       336 ~~~~~----------~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g----~~~~-~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       336 ISDNA----------PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG----SFAG-ALMVVAALALIGALS  394 (399)
T ss_pred             HHhhc----------ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC----chhH-HHHHHHHHHHHHHHH
Confidence            66664          67899999999999999999999999988866532    1433 344444444444443

>TIGR00897 2A0118 polyol permease family

Probab=98.69  E-value=1.7e-06  Score=81.78  Aligned_cols=132  Identities=15%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHH-HHHHHHHHHHHh-h-----hchhhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALI-LGTTGYWLFVAA-N-----LFPSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~-~g~~~~~~~~~~-~-----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      .++..++..+++++.+.++||+|||+.+. .+.+...+.... .     ..++.+.++++.++.|++.+...+. ...+.
T Consensus       263 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~  341 (402)
T TIGR00897       263 WGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFP  341 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            34556777888899999999999988764 333322221111 1     1234556667788888887764332 22333


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  214 (314)
                      +.           ++++||+.+|++.....+|..+||.+++.+.+..     ++.. .+++..++.+++.++.+|++
T Consensus       342 ~~-----------~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-----g~~~-~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       342 TL-----------APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-----GAIG-VVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             hh-----------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----chHH-HHHHHHHHHHHHHHHHHHhc
Confidence            32           3468999999999999999999999998887654     3433 34455566666666666654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=98.68  E-value=9.4e-07  Score=85.10  Aligned_cols=103  Identities=17%  Similarity=0.091  Sum_probs=74.3

Q ss_pred             HHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc---hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhh
Q 021342           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~  146 (314)
                      ...++.++++++.||+|+|+++..+.++..+..... +.   ++...+...-++.|++.+...+....++.+..      
T Consensus       309 ~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------  382 (471)
T PRK10504        309 GSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL------  382 (471)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence            334455678999999999999998887665543332 21   22333344567778888877766666665543      


Q ss_pred             cCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       147 ~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                          +++++|..++++....++|..+|+.+++.+...
T Consensus       383 ----~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        383 ----PDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             ----CHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                568999999999999999999999998877653

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.66  E-value=7.4e-06  Score=75.18  Aligned_cols=211  Identities=12%  Similarity=0.019  Sum_probs=113.4

Q ss_pred             HHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhcc-chhhHhHhhhhhhhhcCC
Q 021342           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVG-EGTYLTAAALSHASNHKL  149 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~-~~~~i~~~~~~~~~~~~~  149 (314)
                      ..++...+.|.++||+|||+.-++-.+.|.+..+.-..+++..++++|++.|++.+.++.+ +.=++.++-+     ++.
T Consensus        81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~-----~g~  155 (354)
T PF05631_consen   81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNK-----RGF  155 (354)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCC
Confidence            3344455678899999999999888888876555556689999999999999999998877 5556666521     232


Q ss_pred             CCccchhhHHHHHH-HHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh-ccCCccccccccccc
Q 021342          150 HEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF-LRKEEDKGEKETADA  227 (314)
Q Consensus       150 ~~~~~rg~~~~~~~-~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~  227 (314)
                       |++..+.-++.-. ....+-.+..++++-.+.+..+.   + +...|...+.+.+++.++... =+|.+.+.++     
T Consensus       156 -~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~---g-~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~-----  225 (354)
T PF05631_consen  156 -PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF---G-PVAPFDAAIVLLAVAAVLILKTWPENYGDTSS-----  225 (354)
T ss_pred             -ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC---C-CcchHHHHHHHHHHHHHHHHhcccccCCCccc-----
Confidence             2223333222211 11122234444554444433221   1 222355555555554444332 2343322111     


Q ss_pred             cccccchHHHHHHHHHH-hhcChhHHHHHHH-HHHHhHHHhhhhccccccccccccccchhhHHHHHHhhHhHHHHH
Q 021342          228 SVNFYSYLVSLSKSITT-LLADVRMLLIIPL-FAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       228 ~~~~~~~~~~~~~~~~~-~l~~~~~lll~p~-~~~~g~~~~f~~~~~~~~~~~~~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                          +.+..+.+++..+ ..+||+++++-.+ .++=+-.+.|+.=|-|.-- ... ..--.|+++..+=++.++++.
T Consensus       226 ----~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~-~~~-~~~P~GlIFssFM~a~MlGS~  296 (354)
T PF05631_consen  226 ----SSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD-PDD-EELPLGLIFSSFMVAMMLGSS  296 (354)
T ss_pred             ----ccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec-CCC-CCCCchHHHHHHHHHHHHHHH
Confidence                1122233333333 4568888876643 3344444555555545222 100 011245666666666666664

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.66  E-value=2.9e-07  Score=85.37  Aligned_cols=110  Identities=15%  Similarity=-0.030  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHH--Hhh-h--chhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV--AAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~--~~~-~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .++..+...++.++.++++||+|||+.+..+..+..+..  ... .  .++.+.++...++.|++.+..++....++.+.
T Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  340 (394)
T TIGR00883       261 LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPEL  340 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            455566777888889999999999998775544332211  111 1  23555666677888888888877777777776


Q ss_pred             hhhhhhhcCCCCccchhhHHHHH-HHHHhhhhHHHHHHHHHHHcCC
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEF-WGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~-~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      .          |+++|+++.++. ......|..+||.+++.+.++.
T Consensus       341 ~----------p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~  376 (394)
T TIGR00883       341 F----------PTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT  376 (394)
T ss_pred             C----------CccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence            5          668899998874 4556688889999999887764

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=98.64  E-value=2.8e-06  Score=81.36  Aligned_cols=133  Identities=10%  Similarity=-0.008  Sum_probs=84.0

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h---c-hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---F-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~---~-~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      ....++.++.++++||+|||+++..+.+.-.+..... .   . ++...++...++.|++.+..++...++++|..    
T Consensus       297 ~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~----  372 (438)
T PRK09952        297 GLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF----  372 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence            4445667788999999999999887765433322211 1   1 22334344556667887777777777888875    


Q ss_pred             hhcCCCCccchhhHHHHHHHH-HhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          145 SNHKLHEGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~-~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                            |.+.|+...++-+.. ..+|..++|.+.+.+.+..+   .+|... +....++.+++.+..+.++|+
T Consensus       373 ------p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---~~~~~~-~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        373 ------GASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---GSWHSV-AIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             ------CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---CCchHH-HHHHHHHHHHHHHHHHHcccc
Confidence                  567888888875444 45788899999888765331   135433 333445555665555666653

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.63  E-value=1.6e-06  Score=82.65  Aligned_cols=154  Identities=17%  Similarity=0.076  Sum_probs=107.7

Q ss_pred             ccchhhhhHHHHHHHHHHHhhHhh-----hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH
Q 021342           27 TRDVHILSCAFLLIFLAYGAAQNL-----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (314)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~l-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~  101 (314)
                      .|++..+.+..++...+.......     +..++.+ +.......+..+...++.+++++++||+|+|+++..+.+.+.+
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAAL  302 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHH
Confidence            345555555555444443332211     1222222 3333334566677777888899999999999999999998877


Q ss_pred             HHHhh-hc--hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHH
Q 021342          102 FVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (314)
Q Consensus       102 ~~~~~-~~--~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~  178 (314)
                      ..+.. +.  ++.+.+++.-++.|++.+..++...++++|..|....   ++.+++.|..+|.+.....++..+++.+.+
T Consensus       303 ~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~---~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  303 GFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEW---KTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHH---hcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            66553 44  4888888899999999999999999999998763211   122355688999999999999999999888


Q ss_pred             HHHcCC
Q 021342          179 AVLKDD  184 (314)
Q Consensus       179 ~i~~~~  184 (314)
                      .+....
T Consensus       380 ~~l~~~  385 (428)
T PF13347_consen  380 LLLALV  385 (428)
T ss_pred             HHHHHh
Confidence            776543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.63  E-value=2.7e-06  Score=80.63  Aligned_cols=129  Identities=16%  Similarity=0.255  Sum_probs=90.2

Q ss_pred             hhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhc-hhhhHH----HHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCC
Q 021342           77 LVASLVVRVLGSKNALILGTTGYWLFVAA-NLF-PSWYTM----VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH  150 (314)
Q Consensus        77 ~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~-~~~~~l----~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~  150 (314)
                      ++.+.+.+|+|.|+++.++.+.+++=... ... ++.+..    +..-.++|+..+..+.+.-.|+.+..          
T Consensus       261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~----------  330 (400)
T PF03825_consen  261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA----------  330 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC----------
Confidence            45799999999999999999999874333 232 443333    23345699999999999888888876          


Q ss_pred             CccchhhHHHHHHHH-HhhhhHHHHHHHHHHHcCCCC-CCCCchhHHHHHHHHHHHHHHHHH-HhccCC
Q 021342          151 EGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDDKG-GSTSGTTLLFIVFLGVITLGTILM-CFLRKE  216 (314)
Q Consensus       151 ~~~~rg~~~~~~~~~-~~~g~~~G~li~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~  216 (314)
                      |++.|+++.+++.+. ..+|..+|++++|.+.+..+. +...| ..+|.+..++.++..+++ ++.||+
T Consensus       331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~-~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW-SAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHHHHHHHHHHHhhccCC
Confidence            789999999999876 579999999999999886541 11112 233444444444444333 344554

>TIGR00895 2A0115 benzoate transport

Probab=98.63  E-value=4.9e-07  Score=84.10  Aligned_cols=108  Identities=12%  Similarity=-0.009  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      ...++..++..++.++++.++||+|+|+.+....+.-....... ..++....++..++.|++.+...+...+++.+.. 
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-  367 (398)
T TIGR00895       289 TGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY-  367 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence            33556667778888999999999999955444333222222222 2445556667788999999988777777777765 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHH
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i  180 (314)
                               |+++|++.+|++.....+|..+||.+++.+
T Consensus       368 ---------~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       368 ---------PTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                     678999999999999999999999998764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.61  E-value=4e-07  Score=87.71  Aligned_cols=110  Identities=10%  Similarity=-0.010  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHh--hchhhHHHHHH--HHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRV--LGSKNALILGT--TGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~--~G~k~~l~~g~--~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .++..++..+++++++.+.||  +++|+...++.  +...+..+. ...++.+.+++.+++.|++.+..++...+++.+.
T Consensus       282 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~  361 (455)
T TIGR00892       282 LSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDL  361 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            445555556666778889987  44444443332  222222222 2456777788889999999988887777777776


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      .          +++++++.+|++....++|.++||.+++.+....
T Consensus       362 ~----------~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  396 (455)
T TIGR00892       362 V----------GAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT  396 (455)
T ss_pred             h----------hHHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence            5          5689999999999999999999999998876543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.60  E-value=1.8e-06  Score=78.99  Aligned_cols=174  Identities=13%  Similarity=0.065  Sum_probs=105.1

Q ss_pred             hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCC-
Q 021342          109 PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG-  187 (314)
Q Consensus       109 ~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~-  187 (314)
                      .++..++++-++.|.|.+..-++...|++++.          +++++++++++..+++.+|..+||++++.+....... 
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~----------~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~   77 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILG----------PIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL   77 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHC----------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence            56778888999999999999999999999986          5678999999999999999999999988776432100 


Q ss_pred             ----------CCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHH-HH
Q 021342          188 ----------STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI-IP  256 (314)
Q Consensus       188 ----------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll-~p  256 (314)
                                ..+|++.++++.....++.+ ++.+.+.|+.+++++ ++...++..    +.+   +.+++|..++. .-
T Consensus        78 ~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i-~~~~~~~p~~~~~~~-~~~~~~~~~----~~~---~~~~~~~~~l~~~~  148 (310)
T TIGR01272        78 SMQVATANAEAAKVHTPYLLLAGALAVLAI-IFAFLPLPELQEADV-ARVSSGDTT----QKT---SAFQFTHLVLGALG  148 (310)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHccCCCCCcccc-ccccccccc----chh---hHHhhHHHHHHHHH
Confidence                      02455543333333333333 333443332211111 110000000    011   23445555543 45


Q ss_pred             HHHHHhHHHhhhhcccccccccc---ccccchhhHHHHHHhhHhHHHHH
Q 021342          257 LFAYSGLQQAFVWAEFTKEIVTP---ALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       257 ~~~~~g~~~~f~~~~~~~~~~~~---~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                      .++|.|.+.+. .++++.+....   .++.++.++....+-...+++..
T Consensus       149 ~f~yvg~e~~~-~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~  196 (310)
T TIGR01272       149 IFVYVGAEVSA-GSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRF  196 (310)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            66777777766 55666655432   45566777766666666665443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.60  E-value=2.5e-06  Score=82.17  Aligned_cols=147  Identities=12%  Similarity=0.075  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh--h-chhh--hHHHHHHHHhhhhhhhhh-ccchh
Q 021342           61 GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--L-FPSW--YTMVPASLYLGFAASIIW-VGEGT  134 (314)
Q Consensus        61 g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~--~-~~~~--~~l~~~r~l~G~g~~~~~-~~~~~  134 (314)
                      .........+...++++++++++||+|||+.++.+.++.++..+..  . .++.  ...+.+-++.+++.+..+ +....
T Consensus       308 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (479)
T PRK10077        308 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV  387 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHH
Confidence            3333445556677888899999999999999999888765543332  1 1111  112223334444444333 33445


Q ss_pred             hHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC-CCCCCchhHHHHHHHHHHHHHHHHH-Hh
Q 021342          135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTILM-CF  212 (314)
Q Consensus       135 ~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~  212 (314)
                      ++++..          |+++|++++|+......+|.++|+.+...+....- ....+|+.. |..+.+..+++.++. ++
T Consensus       388 ~~~e~~----------p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        388 LLSEIF----------PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFS-YWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             HhHhhC----------ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccH-HHHHHHHHHHHHHHHHhc
Confidence            566654          66899999999999999999998766544331000 001234332 444444444444443 45


Q ss_pred             ccCCcc
Q 021342          213 LRKEED  218 (314)
Q Consensus       213 l~~~~~  218 (314)
                      .||++.
T Consensus       457 ~~e~~~  462 (479)
T PRK10077        457 VPETKG  462 (479)
T ss_pred             cccCCC
Confidence            666543

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.59  E-value=1.4e-06  Score=84.41  Aligned_cols=110  Identities=8%  Similarity=-0.077  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhc--hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~--~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      .+...++..++++++++++||+|||+++..+.+...+..+. ...  .+...+....++.|+......+....++.+.. 
T Consensus       317 ~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  395 (496)
T PRK03893        317 LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF-  395 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC-
Confidence            45566677788889999999999999988877654443322 111  23333333444444333333344445555554 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                               |+++||+.+|++.....+|..+||++++.+.+..
T Consensus       396 ---------~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~  429 (496)
T PRK03893        396 ---------DTEQRAAGLGFTYNVGALGGALAPILGALIAQRL  429 (496)
T ss_pred             ---------CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC
Confidence                     6689999999999999999999999999887654

>PRK11462 putative transporter; Provisional

Probab=98.59  E-value=2.2e-05  Score=75.85  Aligned_cols=109  Identities=6%  Similarity=0.000  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHh----hchh-hHHHHHHHHHHHHHHhh-hchh------hhHHHHHHHHhhhhhhhhhccc
Q 021342           65 LGILYTSFTCFSLVASLVVRV----LGSK-NALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGE  132 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~----~G~k-~~l~~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~~~~~~~~  132 (314)
                      ..+.-+..++..++.|.++||    +||| +-+++|.+.+++..... ..|.      ...+++.-++..++....-+.-
T Consensus        51 ~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy  130 (460)
T PRK11462         51 FLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPY  130 (460)
T ss_pred             HHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccH
Confidence            345556778888999999995    7875 55566766666544443 2332      2233345556677777766666


Q ss_pred             hhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      .+..+++++         +++||.+..++......+|..+++++...+..
T Consensus       131 ~al~~~lt~---------d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~  171 (460)
T PRK11462        131 CALGGVITN---------DPTQRISLQSWRFVLATAGGMLSTVLMMPLVN  171 (460)
T ss_pred             HHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777763         57999999999888888888888777554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.59  E-value=1.8e-06  Score=82.08  Aligned_cols=116  Identities=10%  Similarity=-0.113  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc-hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~-~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .+..+...++.+++++++||+|+|+++.++.++..+..+.. +. .+...+++..++.|++.+...+...++++|..+..
T Consensus       264 ~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  343 (437)
T TIGR00792       264 SIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYG  343 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            34455666777889999999999999999887665543332 22 34555666778889998887777777777765321


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                         +..++++.+|..+|++..+..+|..+|+.+.+.+.+..
T Consensus       344 ---~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       344 ---EWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             ---hhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               11123456799999999999999999999988887543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.57  E-value=1.8e-06  Score=79.32  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hch-hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .+...+...++.++.+.+.||+|||+.+..+.....+..... +.+ +.+.+++..++.|++.+...+...+++.+..  
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  330 (365)
T TIGR00900       253 LAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRV--  330 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence            445556666777888999999999999988766554433332 334 3667777889999999988777777777765  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                              |+++|++..|++.....++..+||.+++.+.+.
T Consensus       331 --------~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       331 --------PAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    678999999999999999999999998887653

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.54  E-value=4e-06  Score=80.15  Aligned_cols=133  Identities=16%  Similarity=0.049  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhh--c-hhhHHHHHHHHHHHHHHh---hhchhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVL--G-SKNALILGTTGYWLFVAA---NLFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~--G-~k~~l~~g~~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ...++..++..++.++.+.++||+  + ||+......++..+....   ....+...+.+..+..|++..........+.
T Consensus       283 ~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  362 (434)
T PRK11663        283 SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAA  362 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            345666777888999999999999  3 333322211111111111   1112233333333334443221111122233


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      .+.          .++++||+.+|+.....++|.++||.+.+.+.+..     +|+.. |....++.+++.+...
T Consensus       363 ~~~----------~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~-----g~~~~-f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        363 AEC----------SHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW-----HWTGF-FVVISIAAGISALLLL  421 (434)
T ss_pred             Hhc----------ccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-----ccHHH-HHHHHHHHHHHHHHHH
Confidence            333          25689999999999999999999999988887654     36443 4444555554444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.54  E-value=5e-06  Score=78.28  Aligned_cols=128  Identities=14%  Similarity=0.102  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .++..+...++.++.+.+.||+|+|+.+.++.+++.+.... ...++.+.+++.+++.|++..........+..+.    
T Consensus       260 ~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~----  335 (396)
T TIGR00882       260 TTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ----  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            34445566677788899999999999999988877664444 3567788788889999988654322222222221    


Q ss_pred             hhhcCCCCccchhhHHHH-HHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021342          144 ASNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~-~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                            .+++.++...+. +.....+|.++|+++++.+.+..     +++.. |.+..++..+..+
T Consensus       336 ------~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-----G~~~~-f~~~~~~~~i~~~  389 (396)
T TIGR00882       336 ------FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-----GFQGA-YLVLGCIVLLFTL  389 (396)
T ss_pred             ------CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-----ccHHH-HHHHHHHHHHHHH
Confidence                  133455554544 56788999999999999987754     35433 4444444444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.53  E-value=3.4e-06  Score=80.88  Aligned_cols=110  Identities=13%  Similarity=-0.067  Sum_probs=79.8

Q ss_pred             HHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc--hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc
Q 021342           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~--~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~  147 (314)
                      ...++.++.+.+.||+|+|+++.+|.++..+..+.. +.  .+.+.+++..++.|+|.+...+...+..+|..+...   
T Consensus       276 ~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~---  352 (448)
T PRK09848        276 GTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE---  352 (448)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---
Confidence            345567788899999999999999987665433332 32  245566667788999999888877777777764211   


Q ss_pred             CCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       148 ~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                      .++..+++|...|.+.....+|..+|+.+.+.+...
T Consensus       353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011234569999999999999999999998877643

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.52  E-value=3e-06  Score=77.76  Aligned_cols=137  Identities=11%  Similarity=0.074  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      +-....+..+-+++..++.+.|++|||+...+..+.-.++... ...||+..+++.|.+.|+|.|+ .+...+.-.+.- 
T Consensus       117 llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~l-  194 (528)
T KOG0253|consen  117 LLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFL-  194 (528)
T ss_pred             HHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhc-
Confidence            3345677888899999999999999999998888766554444 4789999999999999999988 333333333332 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                               |..+|+..+-++ +.+..|.++...++..+..+.     +|||.++.+..-.. +...+.+.++|+.
T Consensus       195 ---------p~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-----gwr~~l~~~~~pl~-~~a~f~~w~~ESp  254 (528)
T KOG0253|consen  195 ---------PSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-----GWRYLLFTSSTPLM-FAARFLVWVYESP  254 (528)
T ss_pred             ---------cCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHhHHH-HHHHHHhhcccCc
Confidence                     556777766666 778999999999988877665     59876555543332 2333345577754

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.52  E-value=6.7e-06  Score=80.03  Aligned_cols=132  Identities=10%  Similarity=0.037  Sum_probs=85.4

Q ss_pred             HHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh----hh-chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NL-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        69 ~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~----~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      ..+..++.++++.++||+|+|+.+.++.++..+..+.    .. .++...+...-++..++.+...++..++..+..   
T Consensus       269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~---  345 (491)
T PRK11010        269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLC---  345 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            3566788899999999999988877666543332221    11 234444443444544444433333445555554   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                             +++.+++..+++.....+|..+++.+++.+.+..     +|+ ..|.+..++++.++++...++++
T Consensus       346 -------~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-----G~~-~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        346 -------NKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-----GWP-TFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             -------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence                   4567788899999999999888888888877654     364 45666677777777777666654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.50  E-value=1.7e-06  Score=84.28  Aligned_cols=136  Identities=11%  Similarity=-0.001  Sum_probs=78.4

Q ss_pred             HHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh--hhc---hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhh
Q 021342           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--NLF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (314)
Q Consensus        72 ~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~--~~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~  146 (314)
                      ..++.++++.++||+|||+.++++..+..+....  ...   ++...+...-+...++....++....+.+|..      
T Consensus       348 ~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~------  421 (502)
T TIGR00887       348 TVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF------  421 (502)
T ss_pred             HHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC------
Confidence            3346677899999999999998877655432221  111   11111111111111111112222334445554      


Q ss_pred             cCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC-C-C---CCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-G-G---STSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       147 ~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                          |.+.|++..|+......+|.+++|.+.+.+.+..+ + +   ..+. ...|+++.++.+++.+..+++||++.
T Consensus       422 ----p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       422 ----PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM-GHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             ----chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccc-hHHHHHHHHHHHHHHHHheEeccCCC
Confidence                77899999999999999999999998777655321 0 0   0111 22355566666666555667888754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.49  E-value=1.8e-06  Score=85.88  Aligned_cols=154  Identities=16%  Similarity=0.168  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCC-----
Q 021342          113 TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG-----  187 (314)
Q Consensus       113 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~-----  187 (314)
                      .++.+-++.|+|+.+.++-.-+|+.|..          .+++-..++|+.+.+..+|+++|-+++++.++-..+.     
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnv----------k~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~  308 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNV----------KKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI  308 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCccccccc----------cccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence            6668999999999999999999999987          3468889999999999999999999999988643211     


Q ss_pred             ---CCCchh--HHH---HHHHHHHHHHHHHHHhccCCcccc-------cccc--cccc-cccc----chHHHHHHHHHHh
Q 021342          188 ---STSGTT--LLF---IVFLGVITLGTILMCFLRKEEDKG-------EKET--ADAS-VNFY----SYLVSLSKSITTL  245 (314)
Q Consensus       188 ---~~~~~~--~~~---~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~--~~~~-~~~~----~~~~~~~~~~~~~  245 (314)
                         ..+.||  .+|   ++...+.++..+.++++|+..++.       +.+.  ++.. .+++    +..++-.+.+.++
T Consensus       309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~l  388 (735)
T KOG3626|consen  309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRL  388 (735)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHH
Confidence               112222  123   344444445555567777643321       1110  1110 1111    2334445666788


Q ss_pred             hcChhHHHHHHHHHHHhHHHhhhhccccccc
Q 021342          246 LADVRMLLIIPLFAYSGLQQAFVWAEFTKEI  276 (314)
Q Consensus       246 l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~  276 (314)
                      +++|.+++....-..-.....-+.+..||+.
T Consensus       389 l~N~if~~~~l~~~~~~~~~~G~~tFlPKyL  419 (735)
T KOG3626|consen  389 LSNPIFMLVVLASVIESLAITGYITFLPKYL  419 (735)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhHHHhhHHHH
Confidence            8998777766544333333344456677765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.47  E-value=3.4e-06  Score=78.84  Aligned_cols=110  Identities=9%  Similarity=-0.065  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-h-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .++..++..+++++.+++.||+|||+.+.++.+...+.... . ..++...+.+..++.|++.+..++....++.+..  
T Consensus       280 ~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  357 (405)
T TIGR00891       280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYF--  357 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhC--
Confidence            44555667788889999999999999998887654332222 2 2344555555657777777666666666666654  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                              |+++||+.+|+.+....+|..+||++.+.+.+..
T Consensus       358 --------~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~  391 (405)
T TIGR00891       358 --------PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL  391 (405)
T ss_pred             --------CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    6789999999999999999999999999887754

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.46  E-value=8.6e-06  Score=79.72  Aligned_cols=116  Identities=19%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             ChhHHHHHHHHHHHHHHHhhH----HHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccch
Q 021342           59 NLGTISLGILYTSFTCFSLVA----SLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEG  133 (314)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~~~~----~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~  133 (314)
                      +.+....+++..++++|.+.+    +.+.+++++++.+..+.+.+++..+.. +.++.+..+++-++.|++.....+...
T Consensus       250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~  329 (524)
T PF05977_consen  250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN  329 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666777776666654    556677777788888888887665554 677888777788888888776655544


Q ss_pred             hhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       134 ~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      +.+-..          .|++.|||.++++......++.+|.++.|.+.+..
T Consensus       330 t~~Q~~----------~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  330 TLVQLS----------VPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF  370 (524)
T ss_pred             HHHHHh----------CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            433333          37899999999999999999999999999987764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.46  E-value=1.6e-05  Score=74.94  Aligned_cols=105  Identities=8%  Similarity=-0.017  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h-----chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        68 ~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~-----~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      ......++.++.+.+.||+|+|+.+.++.+...+..... .     .+++..+++.-++.|+|.+...+.........  
T Consensus       260 ~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~--  337 (406)
T PRK15402        260 VFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS--  337 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh--
Confidence            344566778889999999999999888876554322221 1     12445566677889999887665443332221  


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                               ++++||+..+.+......|..+|+.+++.+...
T Consensus       338 ---------~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        338 ---------SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             ---------ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence                     348999999999999999999999998887544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.46  E-value=8.3e-06  Score=78.37  Aligned_cols=132  Identities=14%  Similarity=-0.042  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhh--chhhHH-HHHHHHHHHHHHhh-h--chhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           66 GILYTSFTCFSLVASLVVRVL--GSKNAL-ILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~--G~k~~l-~~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ++..++..++.++++.++||+  |||... +.......+..+.. .  ..+....+.+.++.|.+..........+..+.
T Consensus       296 ~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  375 (452)
T PRK11273        296 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALEL  375 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344455567788899999999  555432 22222222222211 1  12333333344444443222211222233343


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhH-HHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQF-VGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL  213 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  213 (314)
                      .          |+++||+++|++.....+|.. +||.+.+.+.++.     +|+. .|.+..++++++++....+
T Consensus       376 ~----------p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-----g~~~-~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        376 A----------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----GWDG-GFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             c----------ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-----cchH-HHHHHHHHHHHHHHHHHHH
Confidence            3          678999999999888888765 4798888887654     3543 3545555556665555433

>PRK10054 putative transporter; Provisional

Probab=98.45  E-value=9.1e-06  Score=76.76  Aligned_cols=120  Identities=13%  Similarity=0.043  Sum_probs=83.6

Q ss_pred             HHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc-hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCC
Q 021342           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE  151 (314)
Q Consensus        74 ~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~-~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  151 (314)
                      ..+++.+.+.||.++|+.+..+...+.+..... +. ++.+.++++.++.|+|.+...+....++.+..          |
T Consensus       259 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~----------p  328 (395)
T PRK10054        259 SLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA----------P  328 (395)
T ss_pred             eehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------C
Confidence            344567889999999999988887666544443 22 45666667889999999887777666666654          6


Q ss_pred             ccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 021342          152 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (314)
Q Consensus       152 ~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (314)
                      ++.|+++++... ...+|..+||.+++.+.++.+      ....|.+...+..++.++.
T Consensus       329 ~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g------~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        329 PGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP------PWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             cccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC------hhhHHHHHHHHHHHHHHHH
Confidence            678899888654 455899999999999987653      2344555444444444433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.45  E-value=1.4e-05  Score=73.03  Aligned_cols=114  Identities=13%  Similarity=0.034  Sum_probs=77.6

Q ss_pred             CChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           58 GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        58 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ........+.....+.++.++.+++.||+|+|+.+.++..+-.+..+.. ..++...++ +-++.|++.+..++..-+..
T Consensus       177 ~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a  255 (310)
T TIGR01272       177 EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLA  255 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            3334455778888999999999999999999998887776555443332 223333332 44578999999888765444


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      .+..           +++.+++.++. ....+|..++|.+.+.+.+..
T Consensus       256 ~~~~-----------~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~  291 (310)
T TIGR01272       256 LNAL-----------GRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCL  291 (310)
T ss_pred             Hhhh-----------hhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence            4432           24456666765 566789999999888876643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.43  E-value=5.2e-06  Score=79.95  Aligned_cols=109  Identities=9%  Similarity=-0.014  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhh---c--hhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL---F--PSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~---~--~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .....++..++.++++.+.||+|||+.+.++..+..+......   .  .+...++..-++.|+|.+..++.......+.
T Consensus       297 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~  376 (485)
T TIGR00711       297 ILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSG  376 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455567778888899999999999999888876654333221   1  2344555667889999887765443333332


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                      .          |+++||++.+++.....+|..+|+.+.+.+.++
T Consensus       377 ~----------~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       377 L----------PPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             C----------CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2          668999999999999999999999998887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.43  E-value=9.5e-06  Score=76.90  Aligned_cols=109  Identities=15%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hch-hhhHHHHHHHHhhhhhh--hhhccchhhHhHhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAAS--IIWVGEGTYLTAAA  140 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~~--~~~~~~~~~i~~~~  140 (314)
                      .++..++..+++++.+.+.||+|||+.+..+.+...+..... ..+ +....+ .-++.|++..  ........++.+..
T Consensus       272 ~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (426)
T PRK12307        272 MTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLL-GACLFGLMATNVGVGGLVPKFLYDYF  350 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHH-HHHHHHHHHhcccHhHHHHHHHHHhC
Confidence            445556677788889999999999999888876554433322 112 211222 2233343321  11222333444443


Q ss_pred             hhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                                |+++||+++|+......+|..+||++.+.+....
T Consensus       351 ----------p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~  384 (426)
T PRK12307        351 ----------PLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM  384 (426)
T ss_pred             ----------cHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence                      6789999999999999999999999998887553

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.41  E-value=7.4e-06  Score=77.51  Aligned_cols=94  Identities=12%  Similarity=-0.015  Sum_probs=68.5

Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHH
Q 021342           81 LVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN  159 (314)
Q Consensus        81 ~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~  159 (314)
                      ...||++.|+.+..+.+.+.+..... ..++.+.++...++.|++.+...+...+++.+..          |+++||+.+
T Consensus       266 ~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~----------p~~~~g~~~  335 (400)
T PRK11646        266 WSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLA----------DARARGSYM  335 (400)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcC----------Ccccchhhh
Confidence            34456776766777766655443332 4566666666777888888776666666666654          679999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          160 GEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       160 ~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      |++.....+|..+||.+++.+.++.
T Consensus       336 g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        336 GFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHHH
Confidence            9999999999999999999987653

>TIGR00896 CynX cyanate transporter

Probab=98.38  E-value=1.4e-05  Score=73.96  Aligned_cols=112  Identities=9%  Similarity=0.003  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhh-chhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~-G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~  140 (314)
                      ...++..++..+++++.+++.||+ +||+.+.++.+...+..... +.++..... ..++.|++.+...+.....+.+..
T Consensus       236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~  314 (355)
T TIGR00896       236 SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRS  314 (355)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhc
Confidence            345677778888999999999999 56767777766655444332 333222222 346789998877665444443322


Q ss_pred             hhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                               +++++++...++......++..+||.+.+.+.++.
T Consensus       315 ---------~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       315 ---------RQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             ---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     13467788889888888899999999998887654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.36  E-value=8.1e-06  Score=79.45  Aligned_cols=107  Identities=15%  Similarity=-0.010  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh--hh--chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--NL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~--~~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      ....+...++++++|.+.||+|+|+.+..+.+...+....  ..  .++.+..+..-++.|+|.+...+.....+.+.. 
T Consensus       302 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~-  380 (495)
T PRK14995        302 LPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAA-  380 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-
Confidence            3444566777888999999999999988887766543322  11  234445556778899999877665444444432 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                               |+++++...+++....++|..+|+.+.+.+.+
T Consensus       381 ---------~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        381 ---------PPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             ---------CHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     67899999999999999999999999888764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.35  E-value=3.3e-05  Score=72.58  Aligned_cols=123  Identities=14%  Similarity=-0.032  Sum_probs=76.3

Q ss_pred             HHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hh------chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~------~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      ...++.++.+++.||+|+|+.+..+.......... ..      .++...++..-.+.+++.+...++..+...+..   
T Consensus       256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---  332 (390)
T TIGR02718       256 TVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFA---  332 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            34456778999999999999998776544221111 11      123333334444555555655444444444432   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (314)
                            ++++++|+.++......++|..+||.+++.+.+..     +++ ..|....++.+++.+
T Consensus       333 ------~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-----G~~-~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       333 ------GDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-----GYA-GGFLSGTVLAVLAIL  385 (390)
T ss_pred             ------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----ccH-HHHHHHHHHHHHHHH
Confidence                  13478899999999999999999999999887653     243 335544444444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.35  E-value=3.4e-05  Score=72.82  Aligned_cols=136  Identities=10%  Similarity=0.066  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      ++....-++.=.++|.+.+|+|+|+.++++..+.++=... .+.++.+.+.+.+.+.|+-.+....+.--|+++..    
T Consensus       266 s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f----  341 (412)
T PF01306_consen  266 SVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHF----  341 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            3333444444457899999999999999999988875544 58899999999999999999999999999999886    


Q ss_pred             hhcCCCCccchhhHHHH-HHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCc
Q 021342          145 SNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEE  217 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~-~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~  217 (314)
                            |++..++...+ +..+.+.|.++.+.++|.+.++.+     .+ ..|+++..+.+...++. +.+++++
T Consensus       342 ------d~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-----~~-~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  342 ------DKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-----FQ-HTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             -------GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             ------CHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-----cH-HHHHHHHHHHHHHHHHheeeecCCC
Confidence                  33444444444 345567777777788887766542     22 23555566655555554 4455543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.35  E-value=1.2e-05  Score=85.78  Aligned_cols=108  Identities=16%  Similarity=0.032  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .++..++..+++++++.+.||+++|+.+.++.++.++..+.. +.++...+++..++.|++.+...+...+++.+..   
T Consensus       275 ~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  351 (1146)
T PRK08633        275 LAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA---  351 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC---
Confidence            344555666778888999999999998888877766544443 4456777777889999999988777666666654   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                             ++++||+.+|+...+.++|.++++++++.+..
T Consensus       352 -------p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        352 -------PEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             -------CccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   67899999999999999999888888776643

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.35  E-value=0.00014  Score=69.66  Aligned_cols=228  Identities=11%  Similarity=0.025  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHhhHHHHHH----hhch-hhHHHHHHHHHHHHHHhh-hchh------hhHHHHHHHHhhhhhhhhhccch
Q 021342           66 GILYTSFTCFSLVASLVVR----VLGS-KNALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEG  133 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~----~~G~-k~~l~~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~~~~~~~~~  133 (314)
                      .+.=+.-++..++.|.++|    |+|| ||-++.+.+.+++..... ..|+      ..-.++.-.+.|++.+..-..-.
T Consensus        55 lv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~  134 (467)
T COG2211          55 LVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYG  134 (467)
T ss_pred             HHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchh
Confidence            3444667788888888888    5776 677788888887766654 4442      23334566788888888777777


Q ss_pred             hhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCC--CCCchhHHHHHHHHHHHHHHHHHH
Q 021342          134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG--STSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       134 ~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      +..+++.+         +++||.+..+.-......|..+-..+...+.+..+.+  ..+|+ ..-+++.+++++..++.+
T Consensus       135 al~~~iT~---------d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~-~~~~~~~vi~~i~~l~~~  204 (467)
T COG2211         135 ALGPEITQ---------DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQ-GTALVLGVIGVILLLFCF  204 (467)
T ss_pred             hcchhhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHH-HHHHHHHHHHHHHHHHHH
Confidence            77777763         5689999888766666666444333322222222111  12232 112233333333333333


Q ss_pred             h-ccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccccccc-cchhh-H
Q 021342          212 F-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VSGVG-G  288 (314)
Q Consensus       212 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg-~~~ig-~  288 (314)
                      + .+|+..+++..+    ...+.++++.+.   ..++++..+++....+.......+..+.+. +|..-.+| .+... +
T Consensus       205 ~~v~ER~~~~~~~~----~~~~~~~~~~~~---~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~-yy~~y~lg~~~l~~~~  276 (467)
T COG2211         205 FNVKERVVETQPTK----TGVKLKLKDSFL---LIFKNRPLLLLLLMNLLLFIAFNIRGSIMV-YYVTYVLGDPELFAYL  276 (467)
T ss_pred             HHhhcccCccccCc----ccccccHHHHHH---HHHccchHHHHHHHHHHHHHHHHHHhhhhh-eeEEEEcCChHHHHHH
Confidence            3 455433211110    001222332222   356777666665555444444444444433 44444444 22223 3


Q ss_pred             HHHHHhhHhHHHHHHHHHHHHhhc
Q 021342          289 AMAVYGAFDAIFLVELLLRWLYFS  312 (314)
Q Consensus       289 ~~~~~G~~~~i~~~~~l~~~~~~~  312 (314)
                      .+...+ +..+....+..|+.|.-
T Consensus       277 ~~~~~~-~~~l~~~~~~p~L~~~~  299 (467)
T COG2211         277 LLLASG-AGLLIGLILWPRLVKKF  299 (467)
T ss_pred             HHHHHH-HHHHHHHHhHHHHHHHh
Confidence            333333 33333444666665543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.35  E-value=2.3e-06  Score=79.22  Aligned_cols=87  Identities=13%  Similarity=-0.010  Sum_probs=67.3

Q ss_pred             HHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h-c----------hhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-F----------PSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~-~----------~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      ...++.++++.+.||+|+|+.++.+.++..+..... + .          ++.+.++.+.++.|++.+..++...+++++
T Consensus       257 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  336 (356)
T TIGR00901       257 GAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSK  336 (356)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            345777889999999999999888887765543332 2 1          344567777888999999999998888888


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHh
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  167 (314)
                      .+          |+|+||+.+|++....+
T Consensus       337 ~~----------p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       337 LS----------NPKFGATQMALLSSLSA  355 (356)
T ss_pred             hc----------CCCccHHHHHHHHHHHh
Confidence            76          78999999998876553

>PRK09669 putative symporter YagG; Provisional

Probab=98.34  E-value=3.3e-05  Score=74.01  Aligned_cols=112  Identities=7%  Similarity=-0.029  Sum_probs=80.9

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHH-hhh--chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhh
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~-~~~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~  146 (314)
                      +...++.+++++++||+|+|+.+..+.++..+... ..+  .++...+++..++.|++.+...+...++++|..|..   
T Consensus       275 i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~---  351 (444)
T PRK09669        275 IAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYE---  351 (444)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---
Confidence            33445667789999999999999988876653222 222  235666677788999999999888888888887521   


Q ss_pred             cCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       147 ~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      +.++.++..|..++.+..+..+|..+|+.+++.+.+..
T Consensus       352 e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        352 EKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            01112344567788888889999999999998877644

>PRK09848 glucuronide transporter; Provisional

Probab=98.34  E-value=0.00017  Score=69.13  Aligned_cols=105  Identities=18%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhh----chhh-HHHHHHHHHHHHHHh-hhch-----h--hhHHHHHHHHhhhhhhhhhcc
Q 021342           65 LGILYTSFTCFSLVASLVVRVL----GSKN-ALILGTTGYWLFVAA-NLFP-----S--WYTMVPASLYLGFAASIIWVG  131 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~----G~k~-~l~~g~~~~~~~~~~-~~~~-----~--~~~l~~~r~l~G~g~~~~~~~  131 (314)
                      .++.-+..++.+++.|.++||.    |||+ .+..+.+...+.... +..+     +  ....+..-.+.+++.+...++
T Consensus        50 ~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (448)
T PRK09848         50 LLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIP  129 (448)
T ss_pred             HHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            4566678888899999999997    6555 445555433322222 2111     1  122334456678888877766


Q ss_pred             chhhHhHhhhhhhhhcCCCCccchhhHHHHHHHH-----HhhhhHHHHHHHH
Q 021342          132 EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGM-----FASHQFVGNLITL  178 (314)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~-----~~~g~~~G~li~~  178 (314)
                      ..+...+...         +++||.+..+.-...     ...+..++|+++.
T Consensus       130 ~~al~~~~~~---------~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        130 YGSLATAMTQ---------QPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HhhhhhhhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555542         456787765543322     2345556666654

>PRK15075 citrate-proton symporter; Provisional

Probab=98.34  E-value=3e-05  Score=74.11  Aligned_cols=108  Identities=15%  Similarity=0.010  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHH---hh--hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA---AN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        67 ~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~---~~--~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      +..+...+++++++.++||+|||+.++.+.+...+...   ..  ..++...+....++.|++.+...+....++.+.. 
T Consensus       282 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~-  360 (434)
T PRK15075        282 CVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVM-  360 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHC-
Confidence            34455567778899999999999998876543322111   11  1123333333345556666655554555666664 


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHh-hhhHHHHHHHHHHHcCC
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFA-SHQFVGNLITLAVLKDD  184 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~-~g~~~G~li~~~i~~~~  184 (314)
                               |+++|+..+++...... ++..++|.+.+.+.+..
T Consensus       361 ---------p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        361 ---------PAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             ---------CCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence                     67899999998655444 45677898888877654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.33  E-value=4.9e-05  Score=72.65  Aligned_cols=157  Identities=13%  Similarity=0.006  Sum_probs=106.7

Q ss_pred             cccchhhhhHHHHHHHHHHHhhHhhhhhh---cC-CCChhHHHHHHHHH-HHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           26 YTRDVHILSCAFLLIFLAYGAAQNLETTV---NT-EGNLGTISLGILYT-SFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~i---~~-~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      +.|+...+.+..++.+.+++-...+..-.   +. +.++-.......+. ...++.+++|++.+|+|+|+++.++.+.++
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            56667777777777777777655433211   11 11222212223333 333446789999999999999999999888


Q ss_pred             HHHHhh-hch--hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHH
Q 021342          101 LFVAAN-LFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (314)
Q Consensus       101 ~~~~~~-~~~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~  177 (314)
                      +..+.. +.+  +...++++.++.++|.+..++..-++++|..|. -  +-++-.+.-|...+....+.-+|..+|..+.
T Consensus       314 i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDy-g--e~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDY-G--EWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhH-H--HHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            766654 443  677888888999999999999999999988752 1  1112234457777888888889999999888


Q ss_pred             HHHHcCCC
Q 021342          178 LAVLKDDK  185 (314)
Q Consensus       178 ~~i~~~~~  185 (314)
                      ++++...+
T Consensus       391 g~~L~~~G  398 (467)
T COG2211         391 GWILGAIG  398 (467)
T ss_pred             HHHHHHcC
Confidence            88776544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.33  E-value=4.1e-05  Score=71.13  Aligned_cols=102  Identities=16%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h----c-hhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----F-PSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~----~-~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      .+...+...++.++.+++.||+|+|+.+..+.....+..... .    . ++...++...++.|++.+...+....+..+
T Consensus       248 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  327 (385)
T TIGR00710       248 FALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALE  327 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445556677788889999999999999888766554433221 1    1 234445555677888887765554443333


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHh-hhhHHHHHHH
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFA-SHQFVGNLIT  177 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~-~g~~~G~li~  177 (314)
                      .           .++++++..+++..... .|.+.|++++
T Consensus       328 ~-----------~~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       328 D-----------FPHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             c-----------CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2           24689999998877665 4566666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.30  E-value=2e-05  Score=75.43  Aligned_cols=136  Identities=13%  Similarity=-0.068  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH---HHHHhh-h--chhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW---LFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~---~~~~~~-~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      ..+..+...++++++++++||+|+|+....+.....   +..... .  ..+.......-++.|++.............+
T Consensus       293 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  372 (438)
T TIGR00712       293 YFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALE  372 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            445556677888899999999975432222322111   111111 1  1233333333344444321111111122333


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhh-hHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCC
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASH-QFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKE  216 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g-~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~  216 (314)
                      ..          ++++||++.|++....++| ..+||.+.+.+.++.     ++... |.+..++.+++.+.. ++++|+
T Consensus       373 ~~----------~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       373 LA----------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----GWDGG-FMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             hc----------ChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-----cchHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence            32          6689999999998887776 578999988887654     25443 444444455555444 445553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.30  E-value=1.4e-05  Score=77.46  Aligned_cols=136  Identities=11%  Similarity=-0.010  Sum_probs=95.0

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh--h---------chhhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--L---------FPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~--~---------~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      ++..++....+.+.+|++.|+++.++.+.+++.....  .         .++...++...++.+++.+..+.+...++++
T Consensus       299 v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~  378 (468)
T TIGR00788       299 LGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLAR  378 (468)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHH
Confidence            4445555567778889999999999998887644321  1         1333445566788899999888888888888


Q ss_pred             hhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCC--CCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--GSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                      ..          |++++|...+++.+..++|..+|+.+++.+.+..+.  .+.+..+...++..+..++.+.+.+++|+
T Consensus       379 ~~----------p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       379 LC----------PSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             hC----------CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            76          778999999999999999999999999988876541  11223333233333334445555567786

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.29  E-value=3e-05  Score=72.07  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-----hchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .++..+...++.++.+++.||+|+|+.+.++.....+..+..     ...+.+...++-.+.+.+.+........++.+ 
T Consensus       236 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  314 (377)
T PRK11102        236 FALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILD-  314 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhc-
Confidence            445556667788889999999999999988876533221111     11223333333333333333322221111211 


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHH-HhhhhHHHHHHHH
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGM-FASHQFVGNLITL  178 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~-~~~g~~~G~li~~  178 (314)
                               . .++++|+..++.... +..|..+|++++.
T Consensus       315 ---------~-~~~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        315 ---------E-FPHMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             ---------c-ccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     1 347889988887654 3466666666643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.29  E-value=5.4e-05  Score=72.26  Aligned_cols=136  Identities=11%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh---h--chhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~---~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .++......+++.+.+.++||+|||+.+.++.+...+.....   .  ..+....+..-.+.+++.+........+++|.
T Consensus       285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  364 (432)
T PRK10406        285 MTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEM  364 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566777888999999999998877655432222111   1  11222222111222222222222344556666


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhh-hhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                      .          |++.|+.+.|+.+..... .....|.+.+.+. ..+    +| ...++...+..+++.+..++++++
T Consensus       365 f----------p~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g----~~-~~~~~~~~~~~~i~~~~~~~l~~~  426 (432)
T PRK10406        365 F----------PAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIG----ME-TAFFWYVTLMAVVAFLVSLMLHRK  426 (432)
T ss_pred             C----------CCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhC----CC-cHHHHHHHHHHHHHHHHHHHhhhc
Confidence            5          778999999998765443 2334667666543 221    23 333443444445555544555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.26  E-value=6.7e-05  Score=71.90  Aligned_cols=175  Identities=15%  Similarity=0.140  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhhHHHHHHhh-----chhhHHHHHHHHHHHHHHhh-hc----hhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           67 ILYTSFTCFSLVASLVVRVL-----GSKNALILGTTGYWLFVAAN-LF----PSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        67 ~~~~~~~~~~~~~~~l~~~~-----G~k~~l~~g~~~~~~~~~~~-~~----~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      +..+-+.+- ++.|.++|-+     .||+-++++.+.-.+..... ..    .+.....+.-++.-+|.+..-+..-+.+
T Consensus        33 ~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~v  111 (433)
T PF03092_consen   33 LASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALV  111 (433)
T ss_pred             HHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            333334333 3568888866     46777777776553322221 21    2344444455666777776666666666


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                      .|..++        ++++||...+..|.....|.++|..+++.+.+..+     .++. |.+...+..+..+..+++.|.
T Consensus       112 vE~~~~--------~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-----~~~~-f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  112 VELARR--------EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-----PQGV-FLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHhhc--------CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-----CeEE-ehHHHHHHHHHHHHHHHhhhh
Confidence            666543        34559999999999999999999999888776542     3333 444444444444444444443


Q ss_pred             ccccccccc----ccccc-ccchHHHHHHHHHHhhcChhHHHHHH
Q 021342          217 EDKGEKETA----DASVN-FYSYLVSLSKSITTLLADVRMLLIIP  256 (314)
Q Consensus       217 ~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~l~~~~~lll~p  256 (314)
                      +.+++.++.    +.+.+ .....++..++.++.++.+.++....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  222 (433)
T PF03092_consen  178 RKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPIL  222 (433)
T ss_pred             ccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            322222110    00011 11225677788888888776665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.24  E-value=1.5e-05  Score=72.89  Aligned_cols=100  Identities=17%  Similarity=0.113  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc---hhhhHHHHHHHHhhhhhhhhhccchhhHhHhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~---~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~  140 (314)
                      .++..+...++.++.+.++||+|+|+.+........+..... ..   ++....+..-++.|++.+..++....++.+..
T Consensus       249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  328 (352)
T PF07690_consen  249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELV  328 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            455666666778889999999999888877777665544443 22   23455555778899988888777766666654


Q ss_pred             hhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHH
Q 021342          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (314)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~  174 (314)
                                |+++||+..|++....++|..+||
T Consensus       329 ----------~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 ----------PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             ----------HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHHCC
Confidence                      679999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.23  E-value=5.2e-05  Score=71.59  Aligned_cols=131  Identities=10%  Similarity=-0.020  Sum_probs=73.5

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh----hhc-hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~----~~~-~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      ....++.++++.+.||+|+|+.+.++.++..+..+.    ... ++.+.++.+-++.++..+....+..+....+.+   
T Consensus       257 ~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---  333 (402)
T PRK11902        257 AATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCN---  333 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            346678888999999999999887776654432221    122 344544444434333433333333333333321   


Q ss_pred             hhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                             ++..++..+++.+...+|..+++.+++.+.+..     +|+ ..|....+++++++++....+.+
T Consensus       334 -------~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~-----G~~-~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        334 -------RSFSATQYALLSALASVGRVYVGPTSGYLVEAY-----GWP-GFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence                   122233445666666777776677788877654     464 44666666666666555444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.21  E-value=4.6e-05  Score=70.23  Aligned_cols=112  Identities=12%  Similarity=-0.075  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhch-hh-HHHHHHHH-HHHHHHhh-h--chhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGS-KN-ALILGTTG-YWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~-k~-~l~~g~~~-~~~~~~~~-~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ...++..+...++.++.+++.||.++ |+ .+...... ..+..... .  ..+....+...++.|+......+....+.
T Consensus       256 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  335 (379)
T TIGR00881       256 WAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIA  335 (379)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            33455666677888889999998643 32 22221111 11111111 1  23444444556666765544433334445


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      .+..          |+++||+..|++.....+|..+||.+.+.+.++.
T Consensus       336 ~~~~----------~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       336 SELA----------PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             HHhc----------CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence            5543          6789999999999999999999999998887654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.21  E-value=5e-05  Score=71.17  Aligned_cols=108  Identities=7%  Similarity=-0.115  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh--hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~--~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .++..+...+++++.+++.||+|+|+.+..+..+..+..+..  ..++....++..++.|++.....+.......+.   
T Consensus       241 ~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---  317 (382)
T PRK10091        241 MMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQN---  317 (382)
T ss_pred             HHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHh---
Confidence            456666778888899999999999999988876655433222  233434444455555665443322211111111   


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                            .++++.++..  ......++|..+||.+++.+.+.
T Consensus       318 ------~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        318 ------AKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             ------CCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc
Confidence                  1233445544  34567889999999999988764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.18  E-value=3.3e-05  Score=82.57  Aligned_cols=109  Identities=15%  Similarity=-0.013  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhc--------------------hhhhHHHHHHHHhh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLF--------------------PSWYTMVPASLYLG  122 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~--------------------~~~~~l~~~r~l~G  122 (314)
                      ..+...++..+++++.+.++++.++++.+..+.++..+..+. .+.                    ++.+.++++.++.|
T Consensus       266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA  345 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence            355666777888888899998888777666555544332221 111                    45566677888899


Q ss_pred             hhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          123 FAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       123 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      ++.+...+...+++.+..          ++++||+.+|.+....++|..+|+++.+.+..
T Consensus       346 ~~~~~~~~~~~~~~~~~~----------p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        346 AAGGLYIVPLFAALQAWA----------NPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHhHHHHHHHHHhhC----------CcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888777666666654          78999999999999999999999999887753

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.17  E-value=5.8e-05  Score=73.04  Aligned_cols=111  Identities=10%  Similarity=-0.067  Sum_probs=79.2

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h-----chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~-----~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      +...++.++++++.||+|+|+++.++..+..+..+.. .     ..+...+++.-++.|++.+..++...++++|..|..
T Consensus       277 i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~  356 (473)
T PRK10429        277 AANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYG  356 (473)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4555667778999999999999988776544322221 1     234555666778899999999888888899887531


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                      .   .++-.+..|..++....+..+|..+|+.+.+.+...
T Consensus       357 e---~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        357 E---YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             h---HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0   011224456688999888999999999998887653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.17  E-value=5e-05  Score=73.59  Aligned_cols=136  Identities=11%  Similarity=-0.050  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhh-------HHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKN-------ALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTY  135 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~-------~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~  135 (314)
                      ..++..++..++.+++|+++||+|||.       .+.+..+.-.+.... ...++....++.-++.|++.+.......++
T Consensus       293 ~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  372 (476)
T PLN00028        293 IAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGI  372 (476)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            345666778888999999999999762       222222211111111 122333333333444455433322222222


Q ss_pred             HhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       136 i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                      +.+.           .++++|...|+......+|.+++|.+    ....+  ..+|+.. |....++.+++.++.++++.
T Consensus       373 ~~~~-----------~~~~~g~~~g~~~~~g~lg~~i~~~l----~~~~~--~~~y~~~-f~~~~~~~~i~~~~~~~~~~  434 (476)
T PLN00028        373 VPFV-----------SRRSLGVISGLTGAGGNVGAVLTQLL----FFTGS--SYSTETG-ISLMGVMIIACTLPVAFIHF  434 (476)
T ss_pred             Cccc-----------ChhhchhhhhhhhccccHHHHHHHHH----HHhcC--CccHhhH-HHHHHHHHHHHHHHHHheec
Confidence            2222           24688998888755555555555543    22111  1135433 55556666667776777665


Q ss_pred             Cc
Q 021342          216 EE  217 (314)
Q Consensus       216 ~~  217 (314)
                      +.
T Consensus       435 ~~  436 (476)
T PLN00028        435 PQ  436 (476)
T ss_pred             cc
Confidence            43

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.16  E-value=0.0012  Score=63.69  Aligned_cols=285  Identities=12%  Similarity=0.067  Sum_probs=139.8

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhhhhcCCC---ChhHHH---HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEG---NLGTIS---LGILYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~---~~g~~~---~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~   98 (314)
                      .+.|.++.+.+.++++..+|.-.-.+-+++..+.   +...+.   .....-+..+..++-+.+++|++|++.+-.-...
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~   83 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP   83 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence            4567888889999999999987777766654321   112222   1111112222245567899999999988776666


Q ss_pred             HHHHHHhh---hchhhhHH------------HHHHHHhhhhhhhhhccchhh-HhHhhhh-------hhhhcCCCCccch
Q 021342           99 YWLFVAAN---LFPSWYTM------------VPASLYLGFAASIIWVGEGTY-LTAAALS-------HASNHKLHEGTVI  155 (314)
Q Consensus        99 ~~~~~~~~---~~~~~~~l------------~~~r~l~G~g~~~~~~~~~~~-i~~~~~~-------~~~~~~~~~~~~r  155 (314)
                      +..+.+.+   ++|+...+            .+.++..-+..-..|+...-| .++.+..       -+-..|....+|-
T Consensus        84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qa  163 (472)
T TIGR00769        84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEA  163 (472)
T ss_pred             HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            65444332   22221110            000000000000111111100 0111100       0011223356788


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHcCCC---CCCCCchhHH---HHHHHHHHHHHHHHHHhccCCcccccc--c--cc
Q 021342          156 GSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLL---FIVFLGVITLGTILMCFLRKEEDKGEK--E--TA  225 (314)
Q Consensus       156 g~~~~~~~~~~~~g~~~G~li~~~i~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~--~--~~  225 (314)
                      .|..+++....++|.++|+.+..++.+..+   .....|...+   ..+.+++..+.+.+...+.+....+++  +  ++
T Consensus       164 kRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  243 (472)
T TIGR00769       164 KRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALK  243 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhc
Confidence            899999999999999999988776653211   1111231111   122222222233333333221111000  0  00


Q ss_pred             cccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccc----cccccccchhhHHHHHHhhHhHHHH
Q 021342          226 DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI----VTPALGVSGVGGAMAVYGAFDAIFL  301 (314)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~----~~~~lg~~~ig~~~~~~G~~~~i~~  301 (314)
                      +...+++.+.++.+|.   .+++|.++.+...++..++...+.....-...    .++.=-....|-.-...|+...+.+
T Consensus       244 ~~k~k~k~~~~es~k~---i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~  320 (472)
T TIGR00769       244 EKKVKPKMSTMESLKF---LVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMM  320 (472)
T ss_pred             cccCCCCCCHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0111123344454443   57888888888777777777776665433211    1111113333445556677776777


Q ss_pred             HHHHHHHHhhcC
Q 021342          302 VELLLRWLYFSG  313 (314)
Q Consensus       302 ~~~l~~~~~~~~  313 (314)
                      +.. +|++|.-|
T Consensus       321 l~~-~~l~~~~G  331 (472)
T TIGR00769       321 LLS-GNVIRKYG  331 (472)
T ss_pred             HHH-HHHHHHhh
Confidence            766 88887665

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK11043 putative transporter; Provisional

Probab=98.15  E-value=0.00011  Score=69.27  Aligned_cols=103  Identities=13%  Similarity=0.005  Sum_probs=66.4

Q ss_pred             HHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-----h-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-----N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        69 ~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-----~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      ..+..++.++.+.+.||+|+|+.+..+.+...+..+.     . ..++...++..-.+.|++.+...+....+..+.   
T Consensus       248 ~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  324 (401)
T PRK11043        248 TIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRP---  324 (401)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence            3456667777889999999998765554443332221     1 123444455555677887777655543333322   


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                              .++++|++.|++......+...|+.+.+.+..
T Consensus       325 --------~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        325 --------FPQATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             --------CcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                    34689999999998877777788877776643

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.13  E-value=0.0011  Score=64.44  Aligned_cols=155  Identities=15%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHH-HHHHHHHhh-h-chh-hhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTT-GYWLFVAAN-L-FPS-WYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~-~~~~~~~~~-~-~~~-~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ..++..+.-++-.++.|.++|+-|+|+-++.... ...+..+.. + .++ ++...+.-++.-++.+...+.-.+++-+.
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~l  154 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDL  154 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            3566667777777788999999998777765443 333334433 2 233 22222222222233333333345666666


Q ss_pred             hhhhhhhcC---------CC-------CccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCC---CCCchhHHHHHHH
Q 021342          140 ALSHASNHK---------LH-------EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG---STSGTTLLFIVFL  200 (314)
Q Consensus       140 ~~~~~~~~~---------~~-------~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~---~~~~~~~~~~~~~  200 (314)
                      ++++.+.++         .+       .+.+|++..+.=++...+|.++--+++..+....+..   ..+-|...-+...
T Consensus       155 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~  234 (477)
T PF11700_consen  155 ARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVAL  234 (477)
T ss_pred             cCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHH
Confidence            643222100         00       0112388888888888888888777766665443311   1111222222222


Q ss_pred             HHHHHHHHHHHhccCCcc
Q 021342          201 GVITLGTILMCFLRKEED  218 (314)
Q Consensus       201 ~~~~~~~~l~~~l~~~~~  218 (314)
                      ...+.++..++.+||+++
T Consensus       235 ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  235 WWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHhCCCCCC
Confidence            223445566667777644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.11  E-value=0.00021  Score=67.38  Aligned_cols=106  Identities=13%  Similarity=-0.048  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .+...++..+++++.+.+.|+.++|+++..+... .+.... ...++.+......++.|++.+...+...+.+.+.    
T Consensus       247 ~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~----  321 (393)
T PRK11195        247 QAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHR----  321 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh----
Confidence            4455556677777888888999998888777533 222222 2345566566677788998887665544444432    


Q ss_pred             hhhcCCCCccc-hhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          144 ASNHKLHEGTV-IGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       144 ~~~~~~~~~~~-rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                            ++++. +|+..++.....+++..+|..+.+.+.
T Consensus       322 ------~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        322 ------GHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             ------CcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                  24443 799999999999999999999887664

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.09  E-value=5e-05  Score=72.40  Aligned_cols=128  Identities=9%  Similarity=0.012  Sum_probs=96.7

Q ss_pred             HHHhhHHHHHHh-hchhhHHHHHHHHHHHHHHhhhch---hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCC
Q 021342           74 CFSLVASLVVRV-LGSKNALILGTTGYWLFVAANLFP---SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (314)
Q Consensus        74 ~~~~~~~~l~~~-~G~k~~l~~g~~~~~~~~~~~~~~---~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~  149 (314)
                      +.++++|+++|| +|+|+++++|.+.+++-.+....+   ....++++-++.++|.|..=+.....+.+...+       
T Consensus        76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~-------  148 (498)
T COG3104          76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK-------  148 (498)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCC-------
Confidence            466789999997 599999999999998755553223   466788888999999999988888888887642       


Q ss_pred             CCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       150 ~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                       .+.+|-..+++|+..-++|..++|++.+.+..+.     +| ..-|....+-..++++.+.+.++
T Consensus       149 -~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-----g~-~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         149 -DDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-----GW-HVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             -CCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-----CH-HHHHHHHHHHHHHHHHHHHHccc
Confidence             2334788899999999999999999999887765     35 34455555555566666655553

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.08  E-value=0.00016  Score=67.72  Aligned_cols=171  Identities=9%  Similarity=0.019  Sum_probs=87.5

Q ss_pred             ccchhhhhHHHHHHHHHHHhhHhhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchh---hHHHH-HHHHHHHH
Q 021342           27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSK---NALIL-GTTGYWLF  102 (314)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k---~~l~~-g~~~~~~~  102 (314)
                      .++++.+.+..++....+.......++.-++.+..........+.+..+.+-.+.++||..||   +.... ..+.-++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~  270 (368)
T TIGR00903       191 RKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAF  270 (368)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            345555555565555555554433333322222221111122222233333356777776543   33232 22211211


Q ss_pred             HHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          103 VAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       103 ~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                      ... ....+....+..-.+.|++....++...++.+|..          |++.||+..|+......+|.+++|.+.+.+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       271 FLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFC----------DKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhc----------chhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            111 12222333333334556655555555556677765          7789999999999999999999998877665


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 021342          182 KDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (314)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  215 (314)
                      .+        ....|..+.+..+++.+...++++
T Consensus       341 ~~--------~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       341 SS--------AEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             cC--------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            32        123355555555554444444444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.06  E-value=8.1e-07  Score=87.15  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=3.0

Q ss_pred             hhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          111 WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       111 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      ++.++.+.++.|+|+++.|+..-+|+.|..          ++++-+.++|++++...+|+++|-++++..++
T Consensus       141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv----------~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~  202 (539)
T PF03137_consen  141 FYVFILGQLLIGIGATPLYTLGITYIDDNV----------SKKNSPLYIGILYAMSILGPALGFLLGSFCLR  202 (539)
T ss_dssp             -----------SSS----------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccccCCccceeeeecccc----------ccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence            356778999999999999999999999987          45778899999999999999999999887665

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.05  E-value=0.0002  Score=67.12  Aligned_cols=105  Identities=9%  Similarity=-0.012  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .+.......++.++.+++.||+|+|+.+.++.....+..... +.++....+..-.+.+.|.+..++..  ...+..   
T Consensus       245 ~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~---  319 (392)
T PRK10473        245 MALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALG---  319 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhc---
Confidence            344555666778889999999999999998887665544432 33333333333344444444333221  111111   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                             |.++|+   +...+...+++.+|+.+++.+....
T Consensus       320 -------~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        320 -------PFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             -------cCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   222332   3333444566666777666665543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.05  E-value=3.5e-05  Score=73.89  Aligned_cols=130  Identities=17%  Similarity=0.225  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      .+.+++--+.=+++..+.+|+|+-.++.+++.+++.=.+. ....|+|+.++.-+++|+.-+..|.+...|++...    
T Consensus       413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va----  488 (618)
T KOG3762|consen  413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA----  488 (618)
T ss_pred             hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC----
Confidence            4555555555667889999999999999999988763333 35678888889999999999999999999999987    


Q ss_pred             hhcCCCCccchhhHHHHHHHHH-hhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMF-ASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~-~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                            ||+.|..+.+++...+ .+|-.+|.+||+.+....      |.+..|..+.+.+++.++++.
T Consensus       489 ------Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f------g~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  489 ------PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF------GARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             ------CCcchHHHHHHHHHHhcccCcchhhhhhhhhheee------hhHHHHHHHHHHHHHHHHHHH
Confidence                  7888888888877664 588889999998887654      234445544444444444333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.0003  Score=67.78  Aligned_cols=171  Identities=12%  Similarity=0.028  Sum_probs=88.5

Q ss_pred             hhhHHHHHHHHHHHhhHhhhhhhcC----CCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-
Q 021342           32 ILSCAFLLIFLAYGAAQNLETTVNT----EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-  106 (314)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~l~~~i~~----~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-  106 (314)
                      .+.+.+...+.+.+....-..++..    +.+.........-....++.+.++.++||+|||+.++.+..+..+..... 
T Consensus       274 ~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~  353 (485)
T KOG0569|consen  274 GIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS  353 (485)
T ss_pred             HHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            3334444445544433333333332    22233344455556667778889999999999999999887654433221 


Q ss_pred             ----hch---hhhH--HHHHHHHhhhhhhhh-hccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHH
Q 021342          107 ----LFP---SWYT--MVPASLYLGFAASII-WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (314)
Q Consensus       107 ----~~~---~~~~--l~~~r~l~G~g~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li  176 (314)
                          +..   ++..  .+++-++..++.+.. -+...-+.+|..          |+..|..+++.-.+..-++..+=+..
T Consensus       354 ~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf----------~~~~R~aa~s~~~~~~w~~~fiv~~~  423 (485)
T KOG0569|consen  354 IALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELF----------PQSARSAAQSVATAVNWLSNFIVGFA  423 (485)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhC----------CccchHHHHHHHHHHHHHHHHHHHHH
Confidence                111   1111  122222222222211 122445566665          67889888877655554444332222


Q ss_pred             HHHHHcCCCCCCCCchhHHHHHHHHHHHHHH-HHHHhccCCccc
Q 021342          177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEEDK  219 (314)
Q Consensus       177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~  219 (314)
                      -..+.+..       ....|+.+.+.+++.. .+...+|||+.+
T Consensus       424 fp~l~~~~-------g~~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  424 FPPLQNVI-------GPYVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHh-------cchhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            22222222       1244666766666544 445679998754

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.98  E-value=8.6e-05  Score=68.40  Aligned_cols=123  Identities=18%  Similarity=0.153  Sum_probs=82.3

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hc--hhhh--HHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF--PSWY--TMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~--~~~~--~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      +.-.-|.++.+.++||+|||++|..+.+.+.+|.... ..  +|.+  .++.+|++.-.+.    .+...|--+++    
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f----qvaYvYtPEVy----  463 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF----QVAYVYTPEVY----  463 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh----eEEEEecCccc----
Confidence            3444566789999999999999999999998887763 32  3443  4446666644333    33455555554    


Q ss_pred             hhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  214 (314)
                            |...|+...|.-..+.-+|.++.|+++ ......    .+  .. -.+..++.+++.+..+++|
T Consensus       464 ------PTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s----~s--l~-i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  464 ------PTAVRATGVGTCSSMARIGGIFSPVIA-MRAELS----TS--LP-IFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             ------chhhhhcchhhhhhHHhhhhhhhhHHH-HHhccc----ee--eh-HHHHHHHHHHHHHHheeee
Confidence                  678999999999999999999999998 222211    11  12 2344555566666666666

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.95  E-value=0.0012  Score=62.40  Aligned_cols=102  Identities=12%  Similarity=-0.009  Sum_probs=65.4

Q ss_pred             HHHHHHhhHHHHHHhhchhhHHHHHHHHHHHH-HHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcC
Q 021342           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLF-VAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~-~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~  148 (314)
                      +..+++++.+.+.||.+ |+.++.+....... .+. ...++.+.+.+..++.|++.+...+...+++.+..        
T Consensus       264 ~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~--------  334 (394)
T PRK10213        264 ASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL--------  334 (394)
T ss_pred             HHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC--------
Confidence            44455566777788854 44444444333222 222 23345666667788899888776555444444432        


Q ss_pred             CCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       149 ~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                         ++++++..+++....++|..+|+.+++.+.+..
T Consensus       335 ---~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~  367 (394)
T PRK10213        335 ---ADQAEKAGSIQVAVIQLANTCGAAIGGYALDNI  367 (394)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               255677778888888999999999999997654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.95  E-value=0.00039  Score=66.91  Aligned_cols=138  Identities=15%  Similarity=0.086  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhchhhHH--------HHHH--HHHHHHH--HhhhchhhhHHHHHHHHhhhhhhhhhcc
Q 021342           64 SLGILYTSFTCFSLVASLVVRVLGSKNAL--------ILGT--TGYWLFV--AANLFPSWYTMVPASLYLGFAASIIWVG  131 (314)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~l~~~~G~k~~l--------~~g~--~~~~~~~--~~~~~~~~~~l~~~r~l~G~g~~~~~~~  131 (314)
                      ..++.+++..++.++.++++||+++|+..        ..+.  ++..+..  ......+....+..-.+.|.+.+...+.
T Consensus       302 ~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  381 (465)
T TIGR00894       302 LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAG  381 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhh
Confidence            34567788888899999999998765321        1111  1111111  1111222333332333334333332222


Q ss_pred             chhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          132 EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      ......+.           .++.+|...++......+|..++|.+.+.+.+..+  ..+|. ..+.+..+..+++.++..
T Consensus       382 ~~~~~~~~-----------~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~--~~~~~-~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       382 VLINSLDL-----------APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS--KNVWL-IVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             hhhchhhc-----------ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC--chHHH-HHHHHHHHHHHHHHHHee
Confidence            21112222           23578999999988888888888888776654321  01243 334444555555555554


Q ss_pred             hccC
Q 021342          212 FLRK  215 (314)
Q Consensus       212 ~l~~  215 (314)
                      ++++
T Consensus       448 ~~~~  451 (465)
T TIGR00894       448 IFGS  451 (465)
T ss_pred             eeec
Confidence            4443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.94  E-value=0.00049  Score=60.85  Aligned_cols=125  Identities=16%  Similarity=0.170  Sum_probs=71.4

Q ss_pred             HhhHHHHHHhhchhhHHHHHHHHHHH-HHHhh------hc-hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc
Q 021342           76 SLVASLVVRVLGSKNALILGTTGYWL-FVAAN------LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (314)
Q Consensus        76 ~~~~~~l~~~~G~k~~l~~g~~~~~~-~~~~~------~~-~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~  147 (314)
                      .+++|.+.|++|++.++.+|.+...+ |....      .. ++.+.+.....+.|.+.+..-+  +.+++..-       
T Consensus        53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~t--a~lvt~~~-------  123 (250)
T PF06813_consen   53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNT--ASLVTCVR-------  123 (250)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhh--HHHHHHHH-------
Confidence            47899999999999999888864322 22211      11 3556666666666666544322  33333321       


Q ss_pred             CCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       148 ~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                      |  .|++||...|+--....++..+=..+...+..+.      -...++.......+++++..+++++.+
T Consensus       124 N--FP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~------~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  124 N--FPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD------PSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             h--CccccCceehhhhHHHHhHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            2  5679999999988888877655444443443331      123222222233344555556666543

>PRK11462 putative transporter; Provisional

Probab=97.92  E-value=0.00028  Score=68.14  Aligned_cols=114  Identities=9%  Similarity=-0.094  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH-HHHhhhch--hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAANLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        67 ~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~-~~~~~~~~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      +..+...++.++++++.||+|+|+++..+.....+ .....+.+  +...+++.-++.|++.+...+.+.++++|..|.+
T Consensus       271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~  350 (460)
T PRK11462        271 TYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYG  350 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            33344556677899999999999987755443322 11222222  2223344456678887776666667778776521


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                       +.  ++-++.-|..++.+..+..+|..+|+.+++.+...
T Consensus       351 -e~--~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~  387 (460)
T PRK11462        351 -EW--CNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY  387 (460)
T ss_pred             -HH--hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11  11223345556777778889999999998887753

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.91  E-value=0.00028  Score=68.49  Aligned_cols=64  Identities=17%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          109 PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       109 ~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      .|.+.+++..++.|+|+....+...+++++.+          |++.||+++|++.....+|..+|+.+......
T Consensus       379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a----------P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIA----------PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47888889999999999999888888888876          77999999999999999999998888765543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.89  E-value=3.7e-06  Score=74.64  Aligned_cols=131  Identities=15%  Similarity=0.284  Sum_probs=96.2

Q ss_pred             HHHHhhHhhhhhhcCCCChhHHHHHHHHHHHH----HHHhhHHHHHH-hhchhhHH----HHHHHHHHHHHHhhhchhhh
Q 021342           42 LAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVR-VLGSKNAL----ILGTTGYWLFVAANLFPSWY  112 (314)
Q Consensus        42 ~~~~~~~~l~~~i~~~~~~g~~~~~~~~~~~~----~~~~~~~~l~~-~~G~k~~l----~~g~~~~~~~~~~~~~~~~~  112 (314)
                      .+|+.-..+|.+++.|.++.+....++|..|.    +-|++.|.+.| ++|.|+--    ++-.++-.+|.++...+.++
T Consensus        58 fcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw  137 (459)
T KOG4686|consen   58 FCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFW  137 (459)
T ss_pred             eecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            35666677888887777776666667776665    55677888877 45555432    22233345566666778999


Q ss_pred             HHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          113 TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       113 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      +++.+|++.|+|+-.+-++|..|...++          ..+|.+..+|++....-+|+.+.-.+..++..
T Consensus       138 ~M~~GRF~FGIGgESlAVaQN~yav~wF----------KGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  138 TMLAGRFLFGIGGESLAVAQNKYAVYWF----------KGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHhhheeeccCchhhhhhhcceeEEEe----------cCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            9999999999999988889999988886          46899999999998888888776555555543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.00061  Score=63.92  Aligned_cols=125  Identities=17%  Similarity=-0.040  Sum_probs=82.0

Q ss_pred             HHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh--hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc
Q 021342           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (314)
Q Consensus        70 ~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~--~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~  147 (314)
                      +...++++++|.+.|| +.|+++........+..+..  ...+....++.-++.|++.++.   ...+..+..+      
T Consensus       258 v~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~---~~~~~~~~a~------  327 (394)
T COG2814         258 IAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPA---LQGLQTRLAR------  327 (394)
T ss_pred             HHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhh---hhHHHHHhcc------
Confidence            3445677788999999 99999988876665444332  3344555555556666666554   3344555442      


Q ss_pred             CCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 021342          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       148 ~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (314)
                        ..|+.++...+++.+++|+|..+|..+++.+.++.+     +... .++.....+++..+.+.
T Consensus       328 --~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-----~~~~-~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         328 --LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-----YAAT-GWVGAALLLLALLLALL  384 (394)
T ss_pred             --cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----hHHH-HHHHHHHHHHHHHHHHH
Confidence              135789999999999999999999999999987642     3322 33334444445544433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.88  E-value=0.00025  Score=62.06  Aligned_cols=119  Identities=18%  Similarity=0.082  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhch--hhhHHHHHHHHhhhhhhhhhccchhhHhH
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~  138 (314)
                      ....+.......+++++.|.+.|++|||+.+..+...+....+. .+.+  +...++..|++.|++.+..++....++.+
T Consensus        42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  121 (338)
T COG0477          42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSE  121 (338)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34466777777888889999999999998888888654333222 2333  47888889999999999888888888888


Q ss_pred             hhhhhhhhcCCCCc-cchhhHHHHHHH-HHhhhhHHHHHHHHHHHcCCCCCCCCchh
Q 021342          139 AALSHASNHKLHEG-TVIGSFNGEFWG-MFASHQFVGNLITLAVLKDDKGGSTSGTT  193 (314)
Q Consensus       139 ~~~~~~~~~~~~~~-~~rg~~~~~~~~-~~~~g~~~G~li~~~i~~~~~~~~~~~~~  193 (314)
                      ..          ++ ++|+...+.... ....|..+|+++++.+...   ...+|+.
T Consensus       122 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  165 (338)
T COG0477         122 WF----------PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---LLWGWRA  165 (338)
T ss_pred             hc----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHH
Confidence            75          33 478888888888 5788889999887766654   1235765

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.85  E-value=0.005  Score=58.14  Aligned_cols=129  Identities=17%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             HHHhhHHHHHHhhchhhHHHHHHHHHHHHHH-hhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCc
Q 021342           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG  152 (314)
Q Consensus        74 ~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~-~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~  152 (314)
                      ..-++...+.|.+|.|++++++.+++.+.-. ..+.++...+-+.-++-|++.+.    .-+|-+.+..   .    -++
T Consensus        56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~----evay~sYiys---~----v~~  124 (412)
T PF01770_consen   56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA----EVAYYSYIYS---V----VDK  124 (412)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH----HHHHHHHhee---e----cCH
Confidence            3445677899999999999999998765443 34668888888888999988775    3344444431   1    134


Q ss_pred             cchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          153 TVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       153 ~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                      ++--+..+.--++...|-.+|.++|-.+....+   .+.....| +......++.++.+++|.++
T Consensus       125 ~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~---~sy~~L~~-isl~~~~~a~~~~~fLP~~~  185 (412)
T PF01770_consen  125 EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG---VSYFQLNY-ISLASVSLALLIALFLPMPK  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHH-HHHHHHHHHHHHHHHcCCCC
Confidence            555566777777777787888877766554321   12333333 33455566777788898765

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.81  E-value=3.6e-05  Score=72.55  Aligned_cols=180  Identities=11%  Similarity=0.080  Sum_probs=105.6

Q ss_pred             cchhhhhHHHHHHHHHHHhhHhhhhhhcC----C--CChh--HHHHHHHHHHHHH-----HHhhHHHHHHhhchhhHHHH
Q 021342           28 RDVHILSCAFLLIFLAYGAAQNLETTVNT----E--GNLG--TISLGILYTSFTC-----FSLVASLVVRVLGSKNALIL   94 (314)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~l~~~i~~----~--~~~g--~~~~~~~~~~~~~-----~~~~~~~l~~~~G~k~~l~~   94 (314)
                      |+.+..+...+++=.++.+..-.++++-.    .  .+.-  ....+......+.     +-++...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            44555555666665566655544444421    1  1111  1112333333333     33455679999999999999


Q ss_pred             HHHHHHHHHHh-h-hch---hhhHHHHHHHHhhhhhhh-hhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhh
Q 021342           95 GTTGYWLFVAA-N-LFP---SWYTMVPASLYLGFAASI-IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS  168 (314)
Q Consensus        95 g~~~~~~~~~~-~-~~~---~~~~l~~~r~l~G~g~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~  168 (314)
                      |.++++++.+. . -|+   +-...++.-.+..+.+-. .-+....+.++++          |..-||..-|+-.+...+
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~F----------ParvR~t~hGIsAA~GK~  453 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIF----------PARVRSTCHGISAASGKA  453 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhc----------hHHHhhhhhhHHHHhccc
Confidence            99998775554 2 333   222222222333333321 1122455566665          778999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       169 g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                      |.++|...-..+.++.-. ...+-...++++.++..++++..+++||+..
T Consensus       454 GAivg~~~F~~~t~~~yp-~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  454 GAIVGAFGFLYLTDHNYP-PNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             hHHHHHHHhhHhhhccCC-ccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            999988776666552210 0112233467778888889998899998754

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.79  E-value=0.0043  Score=58.17  Aligned_cols=102  Identities=15%  Similarity=0.022  Sum_probs=69.2

Q ss_pred             HHHHhhHHHHHHhhc-----hhhHHHHHHH-HHHH--HHHhh----hch--------hhh---HHHHHHHHhhhhhhhhh
Q 021342           73 TCFSLVASLVVRVLG-----SKNALILGTT-GYWL--FVAAN----LFP--------SWY---TMVPASLYLGFAASIIW  129 (314)
Q Consensus        73 ~~~~~~~~~l~~~~G-----~k~~l~~g~~-~~~~--~~~~~----~~~--------~~~---~l~~~r~l~G~g~~~~~  129 (314)
                      +......|..+|+.+     ||.-++++.. ....  ..+.+    +..        .+.   ....+-.+.|+|.+..-
T Consensus        28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            344567888999999     8877766443 2221  11111    111        221   22234456777777766


Q ss_pred             ccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       130 ~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      ++-.+.++|.+          +|++|++..++.|.....|.+++.++.+.+.++.
T Consensus       108 T~~lALl~D~~----------~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen  108 TSFLALLADLA----------PEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             HHHHHHHHhcC----------CHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            66666666665          7899999999999999999999999988887765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.78  E-value=0.0013  Score=62.62  Aligned_cols=106  Identities=5%  Similarity=-0.173  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      .+.....+.++.++++++.||+++|+++.+..++-.+..+.. ..++...+ .+-++.|++.++.|+.......+..   
T Consensus       275 ~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~-~~l~~~glf~s~~fp~i~sl~~~~~---  350 (410)
T TIGR00885       275 NIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGL-YCLTLCSAFMSLMFPTIYGIALKGL---  350 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence            455567889999999999999999998877776655444433 44443343 4557889999999987665555443   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                             + ++.... +........|..++|.+.+.+.++
T Consensus       351 -------g-~~~~~~-s~~l~~~~~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       351 -------G-QDTKYG-AAGLVMAIIGGGIVPPLQGFIIDM  381 (410)
T ss_pred             -------h-hhhhhh-HHHHHHHHhccchHHHHHHHHHHH
Confidence                   1 222222 222333449999999998888774

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.77  E-value=0.00041  Score=65.88  Aligned_cols=110  Identities=5%  Similarity=-0.218  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhH-HHHHHHHHHHHHH-hhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNA-LILGTTGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~-l~~g~~~~~~~~~-~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      .+...++..++.++.+.++||+|+|+. +....+...+... ....++....+.+-.+.++|....   ...+..     
T Consensus       285 ~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~-----  356 (412)
T TIGR02332       285 AAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSA---MAIFWT-----  356 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh---hhHHHh-----
Confidence            455566777788899999999997764 3333322222111 111222221111112222222111   111111     


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                        ...+..++++|++++|+.....++|.++||.+.+.+....
T Consensus       357 --~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~  396 (412)
T TIGR02332       357 --TPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT  396 (412)
T ss_pred             --hcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC
Confidence              1112236789999999999999999999999887776543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10133 L-fucose transporter; Provisional

Probab=97.74  E-value=0.0015  Score=62.75  Aligned_cols=110  Identities=7%  Similarity=-0.181  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           61 GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        61 g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .........++..+++++.+++.||+|+|+++..+.++-....... +.++... +..-.+.|++.+..++.......+.
T Consensus       297 ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~glg~~~i~P~~~s~a~~~  375 (438)
T PRK10133        297 AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKN  375 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3344567777888999999999999999999888776544333222 3344322 3345678999999887765544443


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                                 .+++.+.+.++... ...|..++|.+.+.+.+.
T Consensus       376 -----------~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        376 -----------LGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             -----------cchhhccchhHHhH-HhccchHHHHHHHHHHHh
Confidence                       23445666776654 445677777776776554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00026  Score=69.13  Aligned_cols=171  Identities=14%  Similarity=0.082  Sum_probs=114.0

Q ss_pred             chhhhhHHHHHHHHHHHhhHhhhh----hhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhc--hhhHHHHHHHHHHHH
Q 021342           29 DVHILSCAFLLIFLAYGAAQNLET----TVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLG--SKNALILGTTGYWLF  102 (314)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~l~~----~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G--~k~~l~~g~~~~~~~  102 (314)
                      -++.+.++..+...++.......+    +...+.......+++.-....++.++.|.+.|+..  +++...++.+.-.+.
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            445555666666666554432222    22233444555577888888899999999999999  444455555555554


Q ss_pred             HHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       103 ~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                      .... +.+++..++...++.|+..|....-...++.++.          ..++...+.|+...+..++..+||.+++.+.
T Consensus       379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~----------g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~  448 (509)
T KOG2504|consen  379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV----------GLEKLSNAYGLLLLFQGIGALVGPPIAGLLY  448 (509)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence            4332 6678889999999999999988777766777765          4578889999999999999999999988665


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342          182 KDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (314)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  214 (314)
                      ...+    ++... |....++.+++..+.++++
T Consensus       449 d~tg----~Y~~~-f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  449 DITG----NYDHA-FYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eccC----Ceeee-hhhcChHHHHHHHHHHHhH
Confidence            4332    24333 3333444444554455454

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.71  E-value=0.0027  Score=59.57  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       110 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                      +.+.++...++.|++.+...+....+..+..           ++++|...+++.....+|..+|+.+++.+.
T Consensus       298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPF-----------PYLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4455666778889998887766665555542           367899999999999999999999887764

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.65  E-value=0.0028  Score=61.41  Aligned_cols=145  Identities=16%  Similarity=0.037  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhch-hhHHHHHHHHHHHHHHhh-hchh---------------------hhHHHHH
Q 021342           61 GTISLGILYTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFVAAN-LFPS---------------------WYTMVPA  117 (314)
Q Consensus        61 g~~~~~~~~~~~~~~~~~~~~l~~~~G~-k~~l~~g~~~~~~~~~~~-~~~~---------------------~~~l~~~  117 (314)
                      |.....+......+.+++-+++.+++|+ |.+..++.+..++..++. +.++                     .+..++.
T Consensus       307 G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  386 (477)
T TIGR01301       307 GAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV  386 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence            4555555555556778888999999995 777788866655544442 2221                     2444455


Q ss_pred             HHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHH
Q 021342          118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFI  197 (314)
Q Consensus       118 r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~  197 (314)
                      -.+.|+.-+.....-.+++++..++        ..++.|..+|+++.+..+.+++..+..+.+..-.++    .....+.
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~--------~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~----~~~~~~~  454 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSN--------LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG----GNLPAFV  454 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccc--------cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC----CCeeHHH
Confidence            6778888887766666666665310        135669999999999999999988876665443321    1233344


Q ss_pred             HHHHHHHHHHHHH-HhccCCc
Q 021342          198 VFLGVITLGTILM-CFLRKEE  217 (314)
Q Consensus       198 ~~~~~~~~~~~l~-~~l~~~~  217 (314)
                      +..+..+++.++. +.+|+++
T Consensus       455 ~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       455 VGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC
Confidence            5555555555554 4567654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.60  E-value=0.00091  Score=62.73  Aligned_cols=170  Identities=12%  Similarity=0.004  Sum_probs=103.7

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhh-----hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhh--chhhHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNL-----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVL--GSKNALILGTT   97 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l-----~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--G~k~~l~~g~~   97 (314)
                      .+-|.++.++++.++++........-     .+.-|-+....+...+++-..--.+.+++|+++||+  |||..+.+...
T Consensus       249 L~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            46677888888888888876655422     222233334455667788888889999999999986  67766654443


Q ss_pred             -HHHHHHHhh-hch--hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhh-hhHH
Q 021342           98 -GYWLFVAAN-LFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFV  172 (314)
Q Consensus        98 -~~~~~~~~~-~~~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~  172 (314)
                       +..+..+.+ ..|  |+....++-++.|+..-..--..+....|+.          |++--|.+.|.-..+..+ |.+.
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~----------pK~AaGtA~Gf~Glf~Yl~Ga~~  398 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFV----------PKKAAGTATGFVGLFAYLIGAAL  398 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccc----------cHhhccchhchhhhHHHHhhHHh
Confidence             333333333 334  3466666777777776433222333334443          556778888877766666 6666


Q ss_pred             HHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 021342          173 GNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (314)
Q Consensus       173 G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (314)
                      ++...+.+.+.     .+|.. .|+++.+.+++++++.
T Consensus       399 a~~~~g~i~d~-----~gW~g-~Fi~~~~~a~l~~lll  430 (448)
T COG2271         399 AGLPLGYIADT-----WGWDG-GFIVLSIAALLAILLL  430 (448)
T ss_pred             cCCcceeeEec-----CCCcc-hHHHHHHHHHHHHHHH
Confidence            66655555443     25754 3566666666655544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.0045  Score=57.11  Aligned_cols=139  Identities=13%  Similarity=0.075  Sum_probs=87.7

Q ss_pred             HHHHHhhHhhhhhhcCCCChhHHH----HHHHHHHHHHHHhhHHHHHHhhc-hhhHHHHHHHHHHHHHHhh-hchhhhHH
Q 021342           41 FLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLG-SKNALILGTTGYWLFVAAN-LFPSWYTM  114 (314)
Q Consensus        41 ~~~~~~~~~l~~~i~~~~~~g~~~----~~~~~~~~~~~~~~~~~l~~~~G-~k~~l~~g~~~~~~~~~~~-~~~~~~~l  114 (314)
                      ...|.....-.+++..|.+.....    .++..+.-...++..|.+.+|.. +|+..+....++.+-..+. +.|....+
T Consensus       221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~  300 (395)
T COG2807         221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPI  300 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            333444444445554454443332    45667777788888899988654 5666666666665544444 56655555


Q ss_pred             HHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchh
Q 021342          115 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT  193 (314)
Q Consensus       115 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~  193 (314)
                      +. .++.|+|.|...+..-..+.+-++         ++++-++-.|+-.....+=..+||.+.+.+-+..+    +|+.
T Consensus       301 lw-~~llG~G~G~~F~laL~li~~rs~---------~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g----sw~~  365 (395)
T COG2807         301 LW-ALLLGLGQGGAFPLALTLILLRSS---------DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG----SWSA  365 (395)
T ss_pred             HH-HHHHhCccchHHHHHHHHHHhhcC---------ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC----ChHH
Confidence            43 489999999887777666666542         45666666666555555556779999888865543    5754

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.52  E-value=0.0087  Score=57.75  Aligned_cols=175  Identities=13%  Similarity=-0.007  Sum_probs=89.2

Q ss_pred             cccchhhhhHHHHHHHHHHHhhHhhhhhhcCC--CChhHHH-HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHH
Q 021342           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTE--GNLGTIS-LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (314)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~--~~~g~~~-~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~  102 (314)
                      +.++.+++++..++.|..|.......+....+  ++..... ..+..+...+..+++|+++||+|+|+++.++.+...+.
T Consensus       250 k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~  329 (462)
T PRK15034        250 QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIF  329 (462)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHH
Confidence            44556667776666666666544221111111  1222111 22233556677788999999999999999888765544


Q ss_pred             HHh-h-hch-----hhhHHHH----HHHHhhhhhhhhhccchhhHhHhhhh-hhhhcC----------CCCccchhhHHH
Q 021342          103 VAA-N-LFP-----SWYTMVP----ASLYLGFAASIIWVGEGTYLTAAALS-HASNHK----------LHEGTVIGSFNG  160 (314)
Q Consensus       103 ~~~-~-~~~-----~~~~l~~----~r~l~G~g~~~~~~~~~~~i~~~~~~-~~~~~~----------~~~~~~rg~~~~  160 (314)
                      ... . ..|     +.....+    .-+..|+|.|..    ...+.+++.+ ..+..+          ...+++-|...|
T Consensus       330 ~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsv----fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G  405 (462)
T PRK15034        330 SALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGST----FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALG  405 (462)
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHH----HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHH
Confidence            322 1 222     2332222    223345555443    2233333321 000000          001135677888


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342          161 EFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (314)
Q Consensus       161 ~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (314)
                      +-.+...+|..+-|.+-+...+..+    ++ ..-++.+.+..++.+.+
T Consensus       406 ~v~a~G~~Ggf~~p~~~g~~~~~~g----~~-~~~~~~~~~~~~~~~~~  449 (462)
T PRK15034        406 FISAIGAVGGFFIPQAFGMSLNMTG----SP-VGAMKVFLIFYIVCVLL  449 (462)
T ss_pred             HHHHHHHcccchhhHHHHHHHHHcC----Cc-HHHHHHHHHHHHHHHHH
Confidence            8888888888887865444444332    23 33355555555444443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.52  E-value=0.0018  Score=63.33  Aligned_cols=89  Identities=9%  Similarity=-0.018  Sum_probs=62.0

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHh-hhch---------hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCC
Q 021342           80 SLVVRVLGSKNALILGTTGYWLFVAA-NLFP---------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (314)
Q Consensus        80 ~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~---------~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~  149 (314)
                      +++.+|++++..+.+|.++.++..+. ....         |.+.+++..++.|+|+....+....++++.+         
T Consensus       341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a---------  411 (500)
T PRK09584        341 NKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLV---------  411 (500)
T ss_pred             HHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC---------
Confidence            34444555556677777666543322 1221         2446778999999999999999888888876         


Q ss_pred             CCccchhhHHHHHHHHHhhhhHHHHHHHH
Q 021342          150 HEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (314)
Q Consensus       150 ~~~~~rg~~~~~~~~~~~~g~~~G~li~~  178 (314)
                       |++.||+.+|.+......|..+++.+..
T Consensus       412 -P~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        412 -PQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             7899999999887776666666665554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.51  E-value=0.0034  Score=58.83  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=102.4

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhhhh-----cCCCC-hhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTV-----NTEGN-LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i-----~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~   98 (314)
                      .+.+|.+.+++..+..|.+|.......+..     ..+.. .|.. .+..-+.-++....+|+++||+|.++++......
T Consensus       215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~-a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~  293 (417)
T COG2223         215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLI-AFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG  293 (417)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH-HHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence            446778888888777777776655333222     22221 1222 3344455556667799999999999999888776


Q ss_pred             HHHHHHhh-hc-------hh----hhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHH
Q 021342           99 YWLFVAAN-LF-------PS----WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF  166 (314)
Q Consensus        99 ~~~~~~~~-~~-------~~----~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  166 (314)
                      .++..... +.       ++    ....+...++.|+|.|..    ...+..+.           +++.|...|+..+..
T Consensus       294 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~if-----------~~~~G~v~G~vga~G  358 (417)
T COG2223         294 MALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVIF-----------PKETGAVTGIVGAIG  358 (417)
T ss_pred             HHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHHH-----------HhhhhHHHHHHHHhc
Confidence            65544432 21       11    233455667777777653    33444443           468899999998888


Q ss_pred             hhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          167 ASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       167 ~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      .+|..+=|..-+...+..+    ++ ...++.+..+.+++.++..
T Consensus       359 ~lGGf~lp~~~g~~~~~tg----~~-~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         359 GLGGFFLPLAFGVSLDLTG----SY-TGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             cccccchhHHHHHHHHhcc----cH-HHHHHHHHHHHHHHHHHHH
Confidence            8888777766665555442    23 3445566666666655543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.43  E-value=0.11  Score=50.70  Aligned_cols=284  Identities=16%  Similarity=0.099  Sum_probs=135.4

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhhhhcCCCC-hhHHHHHHHHHHH---HHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN-LGTISLGILYTSF---TCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~-~g~~~~~~~~~~~---~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      .+++.++.+++.++++...|.-.-.+-+++-.+.. ...+..-=.+...   .+.-+.-..+++++++++++-+....|.
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~  100 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFL  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            67888999999999888888876656554432222 1112111111121   1122235678999999998876666654


Q ss_pred             HHHHh--h-hchhhh--------HHHHH---HHHhhhh-hhhhhccchhh-HhHhhhh------hh-hhcCCCCccchhh
Q 021342          101 LFVAA--N-LFPSWY--------TMVPA---SLYLGFA-ASIIWVGEGTY-LTAAALS------HA-SNHKLHEGTVIGS  157 (314)
Q Consensus       101 ~~~~~--~-~~~~~~--------~l~~~---r~l~G~g-~~~~~~~~~~~-i~~~~~~------~~-~~~~~~~~~~rg~  157 (314)
                      .+.+.  . ++|+-.        .-...   +.+.|+- .--.|+...-| .+|.+..      +. -..+....+|-.|
T Consensus       101 ~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKR  180 (491)
T PF03219_consen  101 GFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKR  180 (491)
T ss_pred             HHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            44333  2 343210        00001   1112211 01122221111 1121110      01 1223345678889


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHc-CCC---CCCCCchhHHHHHHHHHHHHHHHHH---HhccC-----Cccccccccc
Q 021342          158 FNGEFWGMFASHQFVGNLITLAVLK-DDK---GGSTSGTTLLFIVFLGVITLGTILM---CFLRK-----EEDKGEKETA  225 (314)
Q Consensus       158 ~~~~~~~~~~~g~~~G~li~~~i~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~-----~~~~~~~~~~  225 (314)
                      ..+++....++|.++|+.+...+.+ ..+   .+.+.|...+-..+.++.+.+.+..   ..+.+     +... +++..
T Consensus       181 fYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~~~~~  259 (491)
T PF03219_consen  181 FYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-PSAKK  259 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-hhhhc
Confidence            9999999999999998887766665 111   1223354333223222322222222   22221     1110 11111


Q ss_pred             cccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccc----ccccccccccchhhHHHHHHhhHhHHHH
Q 021342          226 DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT----KEIVTPALGVSGVGGAMAVYGAFDAIFL  301 (314)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~----~~~~~~~lg~~~ig~~~~~~G~~~~i~~  301 (314)
                      +..++++.+.++.+|.   ++++|.+..+...++..|+.....-..+-    ..|.++.=.....|-.....|++..+.+
T Consensus       260 ~kk~k~k~s~~es~k~---l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~  336 (491)
T PF03219_consen  260 KKKKKPKMSLKESFKL---LLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM  336 (491)
T ss_pred             ccccCCCccHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            1112233444444443   46778777777777666665554433321    1122221113334445555677666655


Q ss_pred             HHHHHHHHhhcC
Q 021342          302 VELLLRWLYFSG  313 (314)
Q Consensus       302 ~~~l~~~~~~~~  313 (314)
                       ++-++.+|.-|
T Consensus       337 -~l~~~iir~~G  347 (491)
T PF03219_consen  337 -FLSSNIIRRFG  347 (491)
T ss_pred             -HHHHHHHHHhh
Confidence             45566666544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.35  E-value=0.0075  Score=58.78  Aligned_cols=100  Identities=17%  Similarity=0.094  Sum_probs=72.1

Q ss_pred             HHHHHHhhHHHHHHhhchhhH-------HHHHHHHHHHHHH-------hhh----chhhhHHHHHHHHhhhhhhhhhccc
Q 021342           71 SFTCFSLVASLVVRVLGSKNA-------LILGTTGYWLFVA-------ANL----FPSWYTMVPASLYLGFAASIIWVGE  132 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~-------l~~g~~~~~~~~~-------~~~----~~~~~~l~~~r~l~G~g~~~~~~~~  132 (314)
                      ...+.+++.+.+.+|+|+|+.       +.+|.++.++..+       ...    ..+.+.+++.-++.|+|++...+..
T Consensus       321 ~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g  400 (489)
T PRK10207        321 WVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALG  400 (489)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHH
Confidence            343555567789999999873       5555544322111       111    1345667788899999999998887


Q ss_pred             hhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHH
Q 021342          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (314)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i  180 (314)
                      ..++.+.+          |++.+|..+|++....++|..+|..++...
T Consensus       401 ~~~~~~~a----------P~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        401 LAMIAALV----------PQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHhC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777665          778999999999999999999998887655

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.35  E-value=0.014  Score=58.81  Aligned_cols=132  Identities=13%  Similarity=0.045  Sum_probs=82.3

Q ss_pred             HHHHHhhHHHHHH-hhchhhHHHHHHHHHHHHHHhh-hc--h------hhhHHHHHHHHhhhhhhhhhccchhhHhHhhh
Q 021342           72 FTCFSLVASLVVR-VLGSKNALILGTTGYWLFVAAN-LF--P------SWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (314)
Q Consensus        72 ~~~~~~~~~~l~~-~~G~k~~l~~g~~~~~~~~~~~-~~--~------~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~  141 (314)
                      .-+.+++++.+.| ++|+++++.++.+.+.+..+.. +.  +      .....+.+=++..+|.|+.-++.++...|-.+
T Consensus        36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~  115 (654)
T TIGR00926        36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE  115 (654)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC
Confidence            3345566777777 7999999999988876533321 21  1      11224455567778888887777777776542


Q ss_pred             hhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCC--CCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--GSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      +       .++++|-.++.+|+.+.++|..+++.+...+.++.+.  ...+| +..|.+.++..+++.+++.
T Consensus       116 ~-------~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~-~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       116 E-------RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY-PLAFGVPAILMILALIVFM  179 (654)
T ss_pred             c-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch-HHHHHHHHHHHHHHHHHHH
Confidence            1       1234577888899999999999998887776533210  01235 3345555555555555544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.22  E-value=0.013  Score=57.34  Aligned_cols=132  Identities=14%  Similarity=0.004  Sum_probs=84.0

Q ss_pred             HHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchh--h-hHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhh
Q 021342           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS--W-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (314)
Q Consensus        71 ~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~--~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~  146 (314)
                      ....+.+..+...+++|||+.+..+.+...+..+.. +.+.  . ........+..++.+..+.....+.++..      
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~------  435 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI------  435 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Confidence            334444456789999999999999998766544443 2222  1 12444555566666665555566666654      


Q ss_pred             cCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCccc
Q 021342          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDK  219 (314)
Q Consensus       147 ~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~  219 (314)
                          |...|+.+.+.......+|.+++|.+........       ....++.+.....+..++. +++||+...
T Consensus       436 ----pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  436 ----PTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF-------PLLGLILFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence                6678999999999999999999998876554321       1222333344444444444 789998654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.02  E-value=0.0061  Score=56.20  Aligned_cols=90  Identities=10%  Similarity=-0.005  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh--hhch---hhhH----HHHHHHHhhhhhhhhhccchhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--NLFP---SWYT----MVPASLYLGFAASIIWVGEGTY  135 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~--~~~~---~~~~----l~~~r~l~G~g~~~~~~~~~~~  135 (314)
                      .++..+...++.+++++++||+|+|+.+..+..........  ....   +...    ++...++.|++.+..++    +
T Consensus       267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~  342 (366)
T TIGR00886       267 ASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFA----L  342 (366)
T ss_pred             HHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhh----c
Confidence            34445556677788999999999988777666544332222  1112   3332    33344555555555443    3


Q ss_pred             HhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhh
Q 021342          136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASH  169 (314)
Q Consensus       136 i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g  169 (314)
                      +.+..           ++++|+..|++....++|
T Consensus       343 ~~~~~-----------~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       343 VPHIF-----------RRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             chhhc-----------hhhcccHHHHHHHhccCC
Confidence            34442           368999999887666554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.02  E-value=7.1e-06  Score=78.45  Aligned_cols=136  Identities=18%  Similarity=0.118  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-----hhchh------hhHHHHHHHHhhhhhhhhhcc-chh
Q 021342           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-----NLFPS------WYTMVPASLYLGFAASIIWVG-EGT  134 (314)
Q Consensus        67 ~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-----~~~~~------~~~l~~~r~l~G~g~~~~~~~-~~~  134 (314)
                      +..+...++.+++..++||+|||+.++.+.+..++..+.     ...++      ...+. .-.+..++.+..|.. ...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~g~~~~~~~  372 (451)
T PF00083_consen  294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIV-FLALFFAFFSLGWGPLPWI  372 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce-eeeeccccccccccccccc
Confidence            333444556666779999999999999888765432221     11221      12221 111222222222222 334


Q ss_pred             hHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH-HHHHhc
Q 021342          135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-ILMCFL  213 (314)
Q Consensus       135 ~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l  213 (314)
                      +..|..          |.+.|++..++......++..+++.+...+.+..+      ....+.++.++.++.. +..+++
T Consensus       373 ~~~Elf----------Pt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------~~~~~~i~~~~~~i~~i~~~~~l  436 (451)
T PF00083_consen  373 YTAELF----------PTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------GWGVFLIFAGVCLIAIIFVYFFL  436 (451)
T ss_pred             cccccc----------ccccccccccccccccccccccccccccccccccc------ccccchhhHHHHHHHHhheeEEE
Confidence            556654          77899999998887777777777766444433221      1222445555544444 445679


Q ss_pred             cCCccc
Q 021342          214 RKEEDK  219 (314)
Q Consensus       214 ~~~~~~  219 (314)
                      |||+.+
T Consensus       437 pET~g~  442 (451)
T PF00083_consen  437 PETKGK  442 (451)
T ss_pred             eeCCCC
Confidence            998654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.01  E-value=0.025  Score=50.33  Aligned_cols=67  Identities=16%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             HHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhcc-chhhHhHhh
Q 021342           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVG-EGTYLTAAA  140 (314)
Q Consensus        74 ~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~-~~~~i~~~~  140 (314)
                      +...+.+.++||-|||+.-+.=.+.|.+..+.-..|.+..++++|++.|++.+.+..+ ..=+++++-
T Consensus        87 LFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen   87 LFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            4445678999999999987766666665444445678889999999999999988777 455566553

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.97  E-value=0.078  Score=49.88  Aligned_cols=95  Identities=22%  Similarity=0.263  Sum_probs=70.4

Q ss_pred             hHHHH-HHhhchhhHHHHHHHHHH----HHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCc
Q 021342           78 VASLV-VRVLGSKNALILGTTGYW----LFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG  152 (314)
Q Consensus        78 ~~~~l-~~~~G~k~~l~~g~~~~~----~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~  152 (314)
                      ..+.+ .++.++|+.-.+|+..-.    ....+....+.+.+.++-++.|++.|..-++.-+.+.+..          .+
T Consensus       263 ~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt----------~~  332 (403)
T PF03209_consen  263 LAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLT----------SA  332 (403)
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----------CC
Confidence            34443 447777776666665432    2223334457778888889999999998877777777765          56


Q ss_pred             cchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          153 TVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       153 ~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      ++.|.++|.+.+++..+..+|.++++.+.+
T Consensus       333 ~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  333 GRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999888754

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.95  E-value=0.03  Score=55.64  Aligned_cols=106  Identities=16%  Similarity=0.075  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhhHHHHHHhhch-hhHHHHHHHHHHHHHHhh-h--chhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           67 ILYTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        67 ~~~~~~~~~~~~~~~l~~~~G~-k~~l~~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      ....+..+++++.+.+..++++ |+.++++.+....+..+. .  .+|....+..-++.|+|.|..-..... +++..  
T Consensus       357 ~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~-~~ql~--  433 (599)
T PF06609_consen  357 PVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV-IAQLI--  433 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH-eeEee--
Confidence            3444556777788888888887 788788877776554443 1  234444456677888888754332222 22222  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                             .|+++.|.+.|+..++..+|..+|..+...+..
T Consensus       434 -------~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  434 -------VPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             -------eCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                   156789999999999999999999888665553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.55  E-value=0.055  Score=52.96  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHH
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA  104 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~  104 (314)
                      .....+......++.+++..+.||+|||+.++.|..+..+..+
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            4445566667777778889999999999999999987765443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.48  E-value=0.2  Score=47.51  Aligned_cols=63  Identities=13%  Similarity=0.063  Sum_probs=42.0

Q ss_pred             hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       110 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                      ++...+.+.++.|+|.+...+..... + +.         +.+..+|++.+++......+...|+..++++..+
T Consensus       311 ~~~~~~~~~~l~~~G~~~~~p~~~~~-a-l~---------~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        311 VWLWSVLGTSLYAFGIGLIFPTLFRF-T-LF---------SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHH-H-hc---------cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33334557777888888764443211 1 11         1234579999999998888899999998887655

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.017  Score=54.11  Aligned_cols=112  Identities=13%  Similarity=-0.031  Sum_probs=75.7

Q ss_pred             HHHHHHHHhhHHHHHHhhch-hhHHHH-HHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhh
Q 021342           69 YTSFTCFSLVASLVVRVLGS-KNALIL-GTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (314)
Q Consensus        69 ~~~~~~~~~~~~~l~~~~G~-k~~l~~-g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~  145 (314)
                      .+.+++++-+.+.+.||++. ||.+.. |++......... +.+++..+++-+...|++.+..-++....+....|.+. 
T Consensus       316 ~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh-  394 (464)
T KOG3764|consen  316 SLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH-  394 (464)
T ss_pred             ccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh-
Confidence            35677888899999999992 354443 444444433333 66788888888888888888765554444444432110 


Q ss_pred             hcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       146 ~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                        + +..+.-|...+++-.++.+|..+||.+++.+.+..
T Consensus       395 --~-s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i  430 (464)
T KOG3764|consen  395 --V-SGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI  430 (464)
T ss_pred             --c-cccceeeeHHHHHHHHHHHhhhccccccchheeeh
Confidence              0 01124577889999999999999999999987654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.16  E-value=0.041  Score=51.30  Aligned_cols=107  Identities=12%  Similarity=0.042  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhhHHHHHHhhc--hhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           67 ILYTSFTCFSLVASLVVRVLG--SKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        67 ~~~~~~~~~~~~~~~l~~~~G--~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      ..-+..++.+..-.|..++..  -|-++..++.+..-+.+. ...+....++.+..+--+..+..-++-...+...    
T Consensus       305 ~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~----  380 (451)
T KOG2615|consen  305 TTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKY----  380 (451)
T ss_pred             hhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhc----
Confidence            333445555655566677766  666666666554433333 3556667777777777777766544433333332    


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcC
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~  183 (314)
                            -++++||..+|++.....++-++||++++.+...
T Consensus       381 ------~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  381 ------GPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             ------CCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence                  3779999999999999999999999999877654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.13  E-value=0.76  Score=43.58  Aligned_cols=103  Identities=9%  Similarity=-0.004  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH-HHHh--hhch--hhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAA--NLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~-~~~~--~~~~--~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      .++--+.-++-.++-|.++|+.|+|+-.+--.....+ +.++  +..+  .++..+..-++..++....-+...+++.+.
T Consensus        64 ~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~  143 (438)
T COG2270          64 SAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRL  143 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhh
Confidence            3455555556666778899999988776655544433 2222  2234  455666666777777777766677777777


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHH
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~  177 (314)
                      .          ++++.++..++=|....+|+.+-.++.
T Consensus       144 ~----------~k~~~~riS~lg~~~gylgs~i~li~~  171 (438)
T COG2270         144 T----------TKDNMGRISGLGWALGYLGSVILLIFV  171 (438)
T ss_pred             c----------CccccCcccccccccccccchHHHHHH
Confidence            6          345556666666766777776655553

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.93  E-value=0.041  Score=51.48  Aligned_cols=88  Identities=9%  Similarity=-0.070  Sum_probs=65.4

Q ss_pred             hHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCc
Q 021342          112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSG  191 (314)
Q Consensus       112 ~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~  191 (314)
                      ..++++-.+.++|.|..=+...++.+|-.+++       ++++|.+++.+|+...++|..++..+..++.++.     +|
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~-------~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~-----~~  101 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDED-------DDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY-----GW  101 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT-------TTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS------H
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhccc-------chhhhhhhHHHHHHHHhhhhHhhcccchhhcccc-----ch
Confidence            57778888999999998888888888776431       2578889999999999999999999888887654     35


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 021342          192 TTLLFIVFLGVITLGTILMCF  212 (314)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~  212 (314)
                       ..-|.+..+..+++++.++.
T Consensus       102 -~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen  102 -FLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHC
T ss_pred             -hhhhhHHHHHHHHHHHHHHh
Confidence             34465555555666665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.25  Score=46.47  Aligned_cols=114  Identities=11%  Similarity=0.062  Sum_probs=78.7

Q ss_pred             CChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHH-HHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           58 GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGT-TGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        58 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~-~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ...+...++....+..+|.+.+.++.+|+-+.+.+.+.. ..+.++....+.++...++ +-++.|+.-++.||...+.-
T Consensus       271 ~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfsla  349 (422)
T COG0738         271 EQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLA  349 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence            344555677777888899999999999999988887766 4455555555666666665 55889999999999877666


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCC
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~  184 (314)
                      .+..          +  +.....|..-+....|.++=|.+-+++.+..
T Consensus       350 l~~l----------~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~  385 (422)
T COG0738         350 LKNL----------G--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMF  385 (422)
T ss_pred             Hhcc----------C--ccccccceeeeeheecchHHHHHHHHHHHhh
Confidence            6554          2  1122223344445667777788888887664

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.60  E-value=2.4  Score=41.03  Aligned_cols=285  Identities=14%  Similarity=0.064  Sum_probs=139.3

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhhhhcCCCChhHHHHHHHHH-----HHHHHHhhHHHHHHhhchhhHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYT-----SFTCFSLVASLVVRVLGSKNALILGTTGY   99 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~~~~~~~-----~~~~~~~~~~~l~~~~G~k~~l~~g~~~~   99 (314)
                      ..++.++.+++.+++....|+-+-.+-+++-.. ..|..+.+.+=.     +..+.-++-..++++.-+.+++-+-...+
T Consensus        24 ~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~-~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F  102 (509)
T COG3202          24 YELKKFLPLALLFFCILFNYNLLRSLKDSLVVT-RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFF  102 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee-cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            678889999999998888888777666555332 222222222211     22233344566788888877776555444


Q ss_pred             HHHHHh--h-hchhhh----HHHHHHHHhhhhh----hhh-----hccchhh-HhHhhhh------hh-hhcCCCCccch
Q 021342          100 WLFVAA--N-LFPSWY----TMVPASLYLGFAA----SII-----WVGEGTY-LTAAALS------HA-SNHKLHEGTVI  155 (314)
Q Consensus       100 ~~~~~~--~-~~~~~~----~l~~~r~l~G~g~----~~~-----~~~~~~~-i~~~~~~------~~-~~~~~~~~~~r  155 (314)
                      ..+.+.  . ++|.-.    -....|=+.+..-    +..     |+...-| .+|.+..      +. -..+....+|-
T Consensus       103 ~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ea  182 (509)
T COG3202         103 LGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEA  182 (509)
T ss_pred             HHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            333322  2 232100    0011121221111    111     2222111 2222210      00 11122345778


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCC-CCCchhHHHHHHHHH---HHHHHHHHHhccC-----Ccccccccccc
Q 021342          156 GSFNGEFWGMFASHQFVGNLITLAVLKDDKGG-STSGTTLLFIVFLGV---ITLGTILMCFLRK-----EEDKGEKETAD  226 (314)
Q Consensus       156 g~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~l~~~l~~-----~~~~~~~~~~~  226 (314)
                      .|..+.|....+.+..+++.+..++.++.+.- ...-...+..+++++   +++.+++...+.+     |....+...++
T Consensus       183 kRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk  262 (509)
T COG3202         183 KRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKK  262 (509)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhccc
Confidence            89999999999999988888887777654300 000001122222222   2333333333332     21100000000


Q ss_pred             ccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccc----cccccccccchhhHHHHHHhhHhHHHHH
Q 021342          227 ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK----EIVTPALGVSGVGGAMAVYGAFDAIFLV  302 (314)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~----~~~~~~lg~~~ig~~~~~~G~~~~i~~~  302 (314)
                      ...+.+.+..+.++.   .+++|.+..+...++..|+.....-+.+-.    .|....--....|-.-...|++.++..+
T Consensus       263 ~~~k~k~~~~~s~k~---i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~  339 (509)
T COG3202         263 KKKKLKLGLIESFKM---ILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFL  339 (509)
T ss_pred             ccccccCcHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            111122333333333   457777777777777777766666554321    1211111244445557777888788788


Q ss_pred             HHHHHHHhhcC
Q 021342          303 ELLLRWLYFSG  313 (314)
Q Consensus       303 ~~l~~~~~~~~  313 (314)
                      .+-++++|.-|
T Consensus       340 ~~~s~~ir~~G  350 (509)
T COG3202         340 FPGSNLIRRVG  350 (509)
T ss_pred             hhhHHHHHHhh
Confidence            88888887665

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.46  E-value=0.41  Score=45.30  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH-----HHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW-----LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~-----~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ..+.+.|-+|-+++-.-...+.-|+..+.+.+-..     ++...+ +.|+.+.+++.-+..|+.+|..++-....+.+ 
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~-  362 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFFRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE-  362 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeeeehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-
Confidence            34445666676665444444555666666554321     222223 45788888878889999998766554333322 


Q ss_pred             hhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHH
Q 021342          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i  180 (314)
                              + .++++|...+|.-..+-+.|..++.+++..+
T Consensus       363 --------~-~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  363 --------E-VPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             --------c-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                    1 2568999999999888888888888887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.15  E-value=0.36  Score=46.83  Aligned_cols=137  Identities=15%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhchh---------hHHHHHHHHHHHHHHhh-hch---hhhHHHHHHHHhhhhhhh
Q 021342           61 GTISLGILYTSFTCFSLVASLVVRVLGSK---------NALILGTTGYWLFVAAN-LFP---SWYTMVPASLYLGFAASI  127 (314)
Q Consensus        61 g~~~~~~~~~~~~~~~~~~~~l~~~~G~k---------~~l~~g~~~~~~~~~~~-~~~---~~~~l~~~r~l~G~g~~~  127 (314)
                      |.. .++-++...+..+++|.++|+.-+|         ..-.++..+-+++.+.. +.+   .+..++..-+..|+.+..
T Consensus       297 G~~-salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~  375 (466)
T KOG2532|consen  297 GFL-SALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFN  375 (466)
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccc
Confidence            444 4688999999999999999998663         22223333334433332 222   112222111111221111


Q ss_pred             hhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHH
Q 021342          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (314)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (314)
                         ..|.+.. ..++        .++.-+..+|+......++.+++|++.+.+.++.  ....|+ .+|++..++.+++.
T Consensus       376 ---~~Gf~~~-~~~~--------apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~--t~~eW~-~VF~i~a~i~~~~~  440 (466)
T KOG2532|consen  376 ---ISGFYKN-HQDI--------APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDN--TREEWR-IVFLIAAGILIVGN  440 (466)
T ss_pred             ---hhhhHhh-hhhc--------cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCC--CHHHHH-HHHHHHHHHHHHhc
Confidence               0121221 1110        2456788899999999999999999988877532  123475 44666566666666


Q ss_pred             HHHHhc
Q 021342          208 ILMCFL  213 (314)
Q Consensus       208 ~l~~~l  213 (314)
                      +++.+.
T Consensus       441 i~f~~f  446 (466)
T KOG2532|consen  441 IIFLFF  446 (466)
T ss_pred             hheeEe
Confidence            555444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.76  E-value=1.4  Score=42.22  Aligned_cols=21  Identities=19%  Similarity=0.127  Sum_probs=15.8

Q ss_pred             HHHHHHHHHhhhhHHHHHHHH
Q 021342          158 FNGEFWGMFASHQFVGNLITL  178 (314)
Q Consensus       158 ~~~~~~~~~~~g~~~G~li~~  178 (314)
                      +.+.|.....+|..+|...+.
T Consensus       180 Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  180 ANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             cchhHHHHHHhcceeeeeccc
Confidence            788887777777777777665

>PTZ00207 hypothetical protein; Provisional

Probab=94.47  E-value=1.2  Score=44.43  Aligned_cols=115  Identities=11%  Similarity=-0.062  Sum_probs=64.9

Q ss_pred             cccchhhhhHHHHHHHHHH----HhhHhhhhhh-cCCCCh--hHHHHHHHHHHHHHHHhhHHHHHHhhchhh--------
Q 021342           26 YTRDVHILSCAFLLIFLAY----GAAQNLETTV-NTEGNL--GTISLGILYTSFTCFSLVASLVVRVLGSKN--------   90 (314)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~----~~~~~l~~~i-~~~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~--------   90 (314)
                      .+.+++++.+.+++...+-    +...++.+.+ +.+.+.  ...-.++..+..++|-+..|.+....-+|+        
T Consensus       351 ~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt  430 (591)
T PTZ00207        351 KTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPIT  430 (591)
T ss_pred             hchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchh
Confidence            4667777777766654432    2233444555 321111  111246666777777777777663222222        


Q ss_pred             -HHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHhHhh
Q 021342           91 -ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (314)
Q Consensus        91 -~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~  140 (314)
                       .+.+..+....+.+..+.-....+++..++.|++.|..|+......++++
T Consensus       431 ~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selF  481 (591)
T PTZ00207        431 IALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIF  481 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence             22223331111111121112268888999999999999999998898886

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.44  E-value=0.63  Score=44.62  Aligned_cols=130  Identities=9%  Similarity=-0.008  Sum_probs=77.3

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHhh--hc---------hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhc
Q 021342           79 ASLVVRVLGSKNALILGTTGYWLFVAAN--LF---------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (314)
Q Consensus        79 ~~~l~~~~G~k~~l~~g~~~~~~~~~~~--~~---------~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~  147 (314)
                      ......+..-|+++..+.+..++..+..  +.         ++.+..+...++..+.....+......++++.       
T Consensus       275 y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lc-------  347 (433)
T PF03092_consen  275 YRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLC-------  347 (433)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHC-------
Confidence            3344445566777777776665544432  11         11122223445666666666666666777776       


Q ss_pred             CCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCch--hHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGT--TLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       148 ~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                         |+..-|...+++....++|..++..++..+.+..+....++.  +.+.++..++.++.+.+..++|+.++
T Consensus       348 ---P~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  348 ---PKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             ---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence               667889999999999999999999998888765541111122  22223333444445555556776444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.33  E-value=0.83  Score=44.25  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhh-HHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhh
Q 021342           66 GILYTSFTCFSLV-ASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (314)
Q Consensus        66 ~~~~~~~~~~~~~-~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~  143 (314)
                      +.......+++++ .+.+...+|-|++..+|++.-.+-...+ ++.+.+.++...++.++.. ...++..+.++.+.   
T Consensus       284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-~~~pa~~s~~s~~v---  359 (463)
T KOG2816|consen  284 SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-IVFPAIRAFASILV---  359 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-chhHHHHhHHHhhc---
Confidence            4555556667766 4578999999998888887765544443 6667777777766655544 44455555566554   


Q ss_pred             hhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 021342          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (314)
Q Consensus       144 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~  181 (314)
                             +++|+|+.+++...+..++..++|.+-+.+.
T Consensus       360 -------~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  360 -------SPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             -------ccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence                   5789999999999999999999988755554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.11  E-value=1.3  Score=41.90  Aligned_cols=60  Identities=12%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             HHHhhHHHHHHhhc--hhhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           74 CFSLVASLVVRVLG--SKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        74 ~~~~~~~~l~~~~G--~k~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      +..+.+|...+|+.  .|............. ...+.++.+.-+++-++.|++.|..   +.++++
T Consensus        74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l-~va~~~~v~~~l~Gv~las~ssg~G---E~tfL~  135 (402)
T PF02487_consen   74 LVKLIAPFFIHRVPYWIRILICVALSAAGML-LVAFSPSVWVRLLGVVLASLSSGLG---EVTFLS  135 (402)
T ss_pred             HHHHHhHhhhhhccchHHHHHHHHHHHHHHh-heeeccchhHHHHHHHHHhhhhhhh---HHHHHH
Confidence            33456788888776  344333332222221 2224466665555666666666653   444444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=93.92  E-value=2.2  Score=41.70  Aligned_cols=61  Identities=21%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHH-hhhhHHHHHHHHHH
Q 021342          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF-ASHQFVGNLITLAV  180 (314)
Q Consensus       110 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~-~~g~~~G~li~~~i  180 (314)
                      +...++.+-++.++|+-...|...+.+++.+          |++-||+.+|.++... .+|..+++.++...
T Consensus       376 s~~wl~~~~~~~t~gEl~~sPvgls~~~~la----------P~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        376 SLPLMVLGLAVMGFAELFIDPVAMSQITRIE----------IPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHChHHHHHHHHhC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566778889999999999999888888886          7799999999997643 56766666665544

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=93.51  E-value=4  Score=38.52  Aligned_cols=39  Identities=18%  Similarity=0.285  Sum_probs=29.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHHh--hHHHHHH-----hhchhhHHHH
Q 021342           56 TEGNLGTISLGILYTSFTCFSL--VASLVVR-----VLGSKNALIL   94 (314)
Q Consensus        56 ~~~~~g~~~~~~~~~~~~~~~~--~~~~l~~-----~~G~k~~l~~   94 (314)
                      ...++.+.+.+++...+.-.++  .+.|++|     ++|||++-+.
T Consensus        58 ~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   58 QAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             cCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceee
Confidence            3567778888888777776664  7899999     9999987543

>PF12832 MFS_1_like: MFS_1 like family

Probab=93.25  E-value=0.86  Score=32.44  Aligned_cols=66  Identities=14%  Similarity=0.110  Sum_probs=39.0

Q ss_pred             hhHHHHHHHHHHHhhHhhhhhhcCCCChhHH----HHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHH
Q 021342           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (314)
Q Consensus        33 l~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~----~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~   98 (314)
                      +....++.|.+........+....+.+....    ..++..+.-.+++++++.++||+|+++..+.....
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3444455555555444333222222233222    24566677778888999999999998887766543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=92.04  E-value=1.1  Score=43.75  Aligned_cols=38  Identities=8%  Similarity=-0.097  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHh----hchhhHHHHHHHHHHHHH
Q 021342           66 GILYTSFTCFSLVASLVVRV----LGSKNALILGTTGYWLFV  103 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~----~G~k~~l~~g~~~~~~~~  103 (314)
                      ....+.-.++.+++++++||    ..+|........++....
T Consensus       316 ~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  316 TPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             chHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34456666777889999999    778888888887776655

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.97  E-value=7.1  Score=37.76  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=54.6

Q ss_pred             HHHhhchhhHHHHHHHHHHHHHHh-hh-ch-----------------hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhh
Q 021342           82 VVRVLGSKNALILGTTGYWLFVAA-NL-FP-----------------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (314)
Q Consensus        82 l~~~~G~k~~l~~g~~~~~~~~~~-~~-~~-----------------~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~  142 (314)
                      =.+++|+++.+.++.....++.+. .. .|                 +...-++..++.|++-+..-+....++....  
T Consensus       305 rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~--  382 (461)
T KOG3098|consen  305 RIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY--  382 (461)
T ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh--
Confidence            457899999999999877654443 22 11                 3445566788999999877655566666553  


Q ss_pred             hhhhcCCCCccchhhHHHHHHHHHhhhhHHHH
Q 021342          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (314)
Q Consensus       143 ~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~  174 (314)
                               +++|..+++++-.-...+..++-
T Consensus       383 ---------~~~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  383 ---------PDDRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             ---------cCchHHHHHHHHHHHHHHHHHHh
Confidence                     46777887777655555554443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.31  E-value=12  Score=37.35  Aligned_cols=136  Identities=13%  Similarity=0.047  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhhHHHHHH-hhchhhHHHHHHHHHHHHHHh--h---h---ch------------------hhhHHHHHH
Q 021342           66 GILYTSFTCFSLVASLVVR-VLGSKNALILGTTGYWLFVAA--N---L---FP------------------SWYTMVPAS  118 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~-~~G~k~~l~~g~~~~~~~~~~--~---~---~~------------------~~~~l~~~r  118 (314)
                      ..+...-...+++++.++| .+||-+++.++.+++.+....  .   .   .|                  ....++.+.
T Consensus        80 ~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l  159 (571)
T KOG1237|consen   80 NAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGAL  159 (571)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHH
Confidence            3333444455567888998 568999999988877543211  1   0   01                  123556666


Q ss_pred             HHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHH
Q 021342          119 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIV  198 (314)
Q Consensus       119 ~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~  198 (314)
                      .+..+|.|..-+....+-+|-.++    .+-.....+...+..++...+.|..++..+--++-++     .+|. +-|.+
T Consensus       160 ~lia~G~gg~r~~~~~fGadQfd~----~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~-----~~w~-lgf~i  229 (571)
T KOG1237|consen  160 YLIALGAGGIRPCLLAFGADQFDE----LDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN-----VGWK-LGFGI  229 (571)
T ss_pred             HHheeccCCCCCcchhhcccccCc----cCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc-----ccce-eeccH
Confidence            677778877655554444444321    0001123344677777777777777777665555333     2463 33555


Q ss_pred             HHHHHHHHHHHHH
Q 021342          199 FLGVITLGTILMC  211 (314)
Q Consensus       199 ~~~~~~~~~~l~~  211 (314)
                      ..+...+++++++
T Consensus       230 ~~~~~~lai~iF~  242 (571)
T KOG1237|consen  230 PTVLNALAILIFL  242 (571)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555554

>PRK03612 spermidine synthase; Provisional

Probab=90.02  E-value=20  Score=35.35  Aligned_cols=110  Identities=14%  Similarity=0.093  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHH---HHHHH----HHHHHhhhc-hhhhHHHHHHHHhhhhhhhhhccch
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALIL---GTTGY----WLFVAANLF-PSWYTMVPASLYLGFAASIIWVGEG  133 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~---g~~~~----~~~~~~~~~-~~~~~l~~~r~l~G~g~~~~~~~~~  133 (314)
                      ...++++.+++++|+.+++.+.++.-++...+-   +.++.    .++....+. .....++..-++.|+..|..    .
T Consensus        53 ~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~----~  128 (521)
T PRK03612         53 STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME----I  128 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            345788889999999988877644444433221   11110    011110010 11111122223333333332    2


Q ss_pred             hhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       134 ~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      .+++...++.       ..++-|+..|..+++..+|.++|.++.+++.-
T Consensus       129 Pl~~~~~~~~-------~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        129 PLLMRILQRI-------RDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHhc-------cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            3334333210       11245677888899999999999999777654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=88.49  E-value=8.7  Score=37.32  Aligned_cols=59  Identities=15%  Similarity=0.068  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHH
Q 021342          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (314)
Q Consensus       110 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~  178 (314)
                      +.+.+++.-+++++|+=...+....+++..+          |++-.+..+++|......|+.++..++.
T Consensus       393 s~~~lil~y~l~s~gEL~iSpvGLs~~t~la----------P~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         393 SVWWLVLSYVLQSFGELFISPVGLSMVTKLA----------PPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHhCHHHHHHHHHhC----------hHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            5677888999999999988888887787775          6778888888887777777766666554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.12  E-value=2.4  Score=40.73  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             ChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           59 NLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      +.|.+.+.+.....++.++..-.+++|+|-|+.+..+...|.+.+.. ...++.+....-+-..|+-.+...+.-.+.++
T Consensus       332 ~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~  411 (498)
T KOG0637|consen  332 RMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALA  411 (498)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHH
Confidence            35778888888999999999999999999888888888777665544 36777777777888888777776666555555


Q ss_pred             Hhh
Q 021342          138 AAA  140 (314)
Q Consensus       138 ~~~  140 (314)
                      .+.
T Consensus       412 ~y~  414 (498)
T KOG0637|consen  412 LYA  414 (498)
T ss_pred             HHH
Confidence            543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=87.93  E-value=8.3  Score=37.10  Aligned_cols=61  Identities=8%  Similarity=0.017  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHH
Q 021342          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (314)
Q Consensus       110 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i  180 (314)
                      +-+..++.-++.|+..|-..+....+        +... . +++||..+-.+...+..+|..+|..++..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~--------~p~~-v-~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCL--------APRQ-V-DPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHh--------cCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556678888877543332221        2111 2 346777776666666778888888776554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=87.56  E-value=4.2  Score=29.60  Aligned_cols=56  Identities=18%  Similarity=0.003  Sum_probs=41.6

Q ss_pred             hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh
Q 021342           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (314)
Q Consensus        51 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~  106 (314)
                      +++.+-+...+..-.+..|++|.+|.+....+.++..+++.+..+.+.-.+..+..
T Consensus        19 ~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen   19 QADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            34434344445555789999999999999999999888888888887766655553

Note that many members are hypothetical proteins.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=87.28  E-value=4  Score=39.16  Aligned_cols=180  Identities=13%  Similarity=0.028  Sum_probs=95.1

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhHhhhh-hhcCC----CChhHHHHHHHHHHHHHHHhhHHHHHHhhch-hhHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQNLET-TVNTE----GNLGTISLGILYTSFTCFSLVASLVVRVLGS-KNALILGTTG   98 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~-~i~~~----~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~-k~~l~~g~~~   98 (314)
                      .+-+|++++.++....+..|++...+.. .+..+    ...|... .+....-.+++.+++.+.||... |.++++....
T Consensus       263 ~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig-~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~  341 (480)
T KOG2563|consen  263 FKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIG-ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLF  341 (480)
T ss_pred             HcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            4667888888888888888877664444 33221    2335544 35555667788899999999885 6656555544


Q ss_pred             HHHHHHh-h----hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHH
Q 021342           99 YWLFVAA-N----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG  173 (314)
Q Consensus        99 ~~~~~~~-~----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G  173 (314)
                      -.++... +    .......++....+.|++.....+...-.-.|..        + |..|+. -.|..   ..+|++.|
T Consensus       342 ~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~T--------y-Pv~E~t-SsGll---~~~gq~f~  408 (480)
T KOG2563|consen  342 ALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETT--------Y-PVAEGT-SSGLL---NLSGQIFG  408 (480)
T ss_pred             HHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeec--------c-ccCCcc-cceeE---EeehhHHH
Confidence            3333222 1    1123345555666778887766665433333332        2 333332 22332   34555555


Q ss_pred             HHHHHHHHcCCC-CCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          174 NLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       174 ~li~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                      -++........+ ....+|....-+.+.....++..+..+++|.++
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  409 VILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             HHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence            555433322111 111233332233344555566666666666543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=85.92  E-value=16  Score=35.13  Aligned_cols=144  Identities=17%  Similarity=0.134  Sum_probs=81.8

Q ss_pred             ccchhhhhHHHHHHHHHHHhhHhhhhhhcCCCChhHHHHHHHHHHHHH----HHhhHHHHHHhhchhhHHHHHHHHHH--
Q 021342           27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTC----FSLVASLVVRVLGSKNALILGTTGYW--  100 (314)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~~~~~~~~~~~----~~~~~~~l~~~~G~k~~l~~g~~~~~--  100 (314)
                      +..++..+++..+++....+..++...-..+.+.....+++.-..-++    +.+..|++.+|+|.-++=.++...-.  
T Consensus       257 ~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  257 RQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVC  336 (432)
T ss_pred             hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            344666777777777665555544443333344444444444444333    33567889999999887777775432  


Q ss_pred             --HHHHhhhchh-h-hHHHHHHHHhhhhhh--hhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHH
Q 021342          101 --LFVAANLFPS-W-YTMVPASLYLGFAAS--IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (314)
Q Consensus       101 --~~~~~~~~~~-~-~~l~~~r~l~G~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~  174 (314)
                        +...+++.+. . ...-..-++.|+..+  .+|.-.-+. .+      ..++.-|++|||...|.-.+..++-..+-.
T Consensus       337 L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~-~q------i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~  409 (432)
T PF06963_consen  337 LALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAV-TQ------IMQENVPESERGAVSGVQNSLQSLFELLSF  409 (432)
T ss_pred             HHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHH-HH------hhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence              2223333332 1 122223456677666  355443321 11      233444789999999998888777776665


Q ss_pred             HHH
Q 021342          175 LIT  177 (314)
Q Consensus       175 li~  177 (314)
                      ++.
T Consensus       410 ~~~  412 (432)
T PF06963_consen  410 VLT  412 (432)
T ss_pred             HHH
Confidence            554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	9e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 39.5 bits (92), Expect = 9e-04
 Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 25/307 (8%)

Query: 21  LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGIL----YTSFTCFS 76
              ++Y     +L   F L  +A      L         L     G++    Y  +    
Sbjct: 19  GQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIP 78

Query: 77  LVASLVVRVLGSKNALILG----TTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGE 132
           + A ++++ L  K  +I G      G  LF  A    ++   +     +      +    
Sbjct: 79  IPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA 138

Query: 133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL----------ITLAVLK 182
             ++T      + + +L+      SF      +F     + N+          ++   L 
Sbjct: 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198

Query: 183 DDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSI 242
             K          +++ + ++ L  +L+   +    + +  +     +F + L  L++  
Sbjct: 199 AYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIR 258

Query: 243 TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIFLV 302
               A      ++  F Y G Q A  W+   +  V    G++    A  + G     F+ 
Sbjct: 259 HWRWA------VLAQFCYVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG 311

Query: 303 ELLLRWL 309
                WL
Sbjct: 312 RFTGTWL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.85
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.74
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.7
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.66
2xut_A	524	Proton/peptide symporter family protein; transport	99.43
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.04
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.78
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.71
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.71
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.67
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.94
2xut_A	524	Proton/peptide symporter family protein; transport	97.67

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.86  E-value=1.4e-19  Score=169.82  Aligned_cols=268  Identities=9%  Similarity=0.018  Sum_probs=173.7

Q ss_pred             ccccchhhhhHHHHHHHHHHHhhH----hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           25 NYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      ++++.+..+.+.+++....+....    .++++.+.+........++..+...++++++|+++||+|||++++++.+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            444455555555554443333332    3344444444333444678888999999999999999999999999999887


Q ss_pred             HHHHhh----hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHH
Q 021342          101 LFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (314)
Q Consensus       101 ~~~~~~----~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li  176 (314)
                      +..+..    ..++++.++++|++.|++.+..+++..++++++.          ++++|+++++++.....+|..+||++
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~  172 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            655443    4578999999999999999999999888999886          67899999999999999999999999


Q ss_pred             HHHHH-cCCCCCC--------------------CCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccccccchH
Q 021342          177 TLAVL-KDDKGGS--------------------TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYL  235 (314)
Q Consensus       177 ~~~i~-~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  235 (314)
                      ++.+. ...+...                    .+|++.++ +..+...+..++.++.++|+.++++++++    ++++.
T Consensus       173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~  247 (438)
T 3o7q_A          173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM-IIVAIVLLVALLIMLTKFPALQSDNHSDA----KQGSF  247 (438)
T ss_dssp             TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCTTTCCCCS----STTSH
T ss_pred             HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHcCCcccccccccc----cccch
Confidence            98887 4321000                    00655433 33333333333334443333222211111    11222


Q ss_pred             HHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhcccccc-cccc-ccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE-IVTP-ALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       236 ~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~-~~~~-~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      ++.+   .+.+++|+.+......+...........++|.+ .... .++..+.|....++++..+++.. ..+++.+-
T Consensus       248 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r  321 (438)
T 3o7q_A          248 SASL---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF-TGTWLISR  321 (438)
T ss_dssp             HHHH---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhhH---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            2323   346788888776665554444444455666655 3332 56677888888888888888664 55555543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.85  E-value=9e-20  Score=171.53  Aligned_cols=235  Identities=9%  Similarity=-0.043  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h----chhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~----~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ....++..+...++++++|+++||+|||++++++.+++.+..+.. +    .++++.++++|++.|++.+..+++..+++
T Consensus        65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i  144 (451)
T 1pw4_A           65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM  144 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHH
Confidence            344678889999999999999999999999999999987766654 6    78899999999999999999998888888


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  216 (314)
                      +++.          ++++|+++++++.....+|.++||++++.+....+    +|++.+++..+...+..++..+++||+
T Consensus       145 ~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----~w~~~f~~~~~~~~~~~~~~~~~~~~~  210 (451)
T 1pw4_A          145 VHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWHAALYMPAFCAILVALFAFAMMRDT  210 (451)
T ss_dssp             HTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC----CSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            8876          67899999999999999999999999988765431    287665444333333344445667775


Q ss_pred             cccccccc-cccccc------ccchHHHHHHH--HHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchh
Q 021342          217 EDKGEKET-ADASVN------FYSYLVSLSKS--ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGV  286 (314)
Q Consensus       217 ~~~~~~~~-~~~~~~------~~~~~~~~~~~--~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~i  286 (314)
                      ++.++... ++....      ++++.+...++  ..+.+++|.++.+....+...+.......++|.+... ..++..+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  290 (451)
T 1pw4_A          211 PQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS  290 (451)
T ss_dssp             STTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH
T ss_pred             HhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            43221110 000000      00000011111  2356778888777665555555444455566655543 45667888


Q ss_pred             hHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          287 GGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       287 g~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      |+.+.+.++.+++++. +.+++.|-
T Consensus       291 ~~~~~~~~~~~~~~~~-~~g~l~~~  314 (451)
T 1pw4_A          291 SWAYFLYEYAGIPGTL-LCGWMSDK  314 (451)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            9999999998888765 55665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.74  E-value=2.4e-17  Score=151.73  Aligned_cols=229  Identities=12%  Similarity=-0.010  Sum_probs=156.5

Q ss_pred             hhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhcc
Q 021342           53 TVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVG  131 (314)
Q Consensus        53 ~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~  131 (314)
                      +.+.+........++..+...+++++.|+++||+|||+++..+.+...+..... +.++.+.+++.|++.|++.+..++.
T Consensus        29 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~  108 (375)
T 2gfp_A           29 DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVM  108 (375)
T ss_dssp             TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhh
Confidence            333333333344678888889999999999999999999999999887766654 6789999999999999999999999


Q ss_pred             chhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHH-HH
Q 021342          132 EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LM  210 (314)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  210 (314)
                      ...++.|..          ++++|+++++++.....+|..+||.+++.+.+..     +|++. |.+..+..++..+ ..
T Consensus       109 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~  172 (375)
T 2gfp_A          109 ARTLPRDLY----------ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-----NWRAC-YLFLLVLCAGVTFSMA  172 (375)
T ss_dssp             HHHHHHHHH----------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-----HHHHH-HHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-----cHHHH-HHHHHHHHHHHHHHHH
Confidence            889999987          5689999999999999999999999998876432     47654 3333343333333 33


Q ss_pred             HhccCCccccccccccccccccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccchhhHH
Q 021342          211 CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGA  289 (314)
Q Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~ig~~  289 (314)
                      +++||+++.+++++     +..++++       +.+++|+.+......+............+|.+... ..++..+.|+.
T Consensus       173 ~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  240 (375)
T 2gfp_A          173 RWMPETRPVDAPRT-----RLLTSYK-------TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL  240 (375)
T ss_dssp             CSSCCCSTTTCCCC-----CTTTCST-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             HHCcccCCCCcccc-----cHHHHHH-------HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            45666543322110     1111111       23455666555544444444444455566655543 34567788888


Q ss_pred             HHHHhhHhHHHHHHHHHHHHh
Q 021342          290 MAVYGAFDAIFLVELLLRWLY  310 (314)
Q Consensus       290 ~~~~G~~~~i~~~~~l~~~~~  310 (314)
                      ..+.++...+++. ..+|+.|
T Consensus       241 ~~~~~~~~~~~~~-~~~~l~~  260 (375)
T 2gfp_A          241 FILPIPAAFFGAW-FAGRPNK  260 (375)
T ss_dssp             HHTHHHHHHHHHH-HHHTTTT
T ss_pred             HHHHHHHHHHHHH-HHHHHHH
Confidence            8888888777554 5555544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.70  E-value=1.9e-15  Score=144.01  Aligned_cols=134  Identities=10%  Similarity=-0.003  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHh-hchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHh
Q 021342           62 TISLGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (314)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~l~~~-~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~  139 (314)
                      ....++..++..++++++|+++|| +|||+++.++.+.+.+..+.. +.++.+.++++|++.|++.+..+++..++++|+
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  136 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTL  136 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            344677888889999999999999 899999999999887766654 678999999999999999999999999999998


Q ss_pred             hhhhhhhcCCCCccc--hhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          140 ALSHASNHKLHEGTV--IGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       140 ~~~~~~~~~~~~~~~--rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      .          ++++  |+.+++++....++|..+||.+++.+.+..     +|++.+++ ..+..+++.++.+
T Consensus       137 ~----------~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----g~~~~f~~-~~~~~~~~~~~~~  194 (491)
T 4aps_A          137 Y----------DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-----GYHVAFSL-AAIGMFIGLLVYY  194 (491)
T ss_dssp             S----------SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHH-HHHHHHHHHHHHH
T ss_pred             c----------CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHH-HHHHHHHHHHHHH
Confidence            6          4556  788888899999999999999999887654     48765444 3444444444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.66  E-value=4.3e-15  Score=141.37  Aligned_cols=143  Identities=9%  Similarity=0.034  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-------------------hchhhhHHHHHHHHhhhhh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-------------------LFPSWYTMVPASLYLGFAA  125 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-------------------~~~~~~~l~~~r~l~G~g~  125 (314)
                      .++.+++..++++++|+++||+|||++++++.+++.+..+..                   +++|++.++++|+++|+|.
T Consensus        61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~  140 (491)
T 4gc0_A           61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV  140 (491)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            466778889999999999999999999999999988766542                   3678999999999999999


Q ss_pred             hhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCC--chhHHHHHHHHHH
Q 021342          126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTS--GTTLLFIVFLGVI  203 (314)
Q Consensus       126 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~--~~~~~~~~~~~~~  203 (314)
                      |..++....|++|++          |+++|++..+.+......|..++++++..+....+....+  |++..+.+.....
T Consensus       141 G~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (491)
T 4gc0_A          141 GLASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA  210 (491)
T ss_dssp             HHHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence            999999999999986          7899999999999999999999999988776543311111  1122233333344


Q ss_pred             HHHHHHHHhccCCc
Q 021342          204 TLGTILMCFLRKEE  217 (314)
Q Consensus       204 ~~~~~l~~~l~~~~  217 (314)
                      ++..+..+++||++
T Consensus       211 ~~~~~~~~~~peSp  224 (491)
T 4gc0_A          211 LLFLMLLYTVPESP  224 (491)
T ss_dssp             HHHHHHGGGSCCCH
T ss_pred             hhhhhhhhcCCCCh
Confidence            44455556788865

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.43  E-value=3.9e-12  Score=122.04  Aligned_cols=141  Identities=12%  Similarity=0.113  Sum_probs=108.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHhhHHHHHHhh-chhhHHHHHHHHHHHHHHhh-hch-hhhHHHHHHHHhhhhhhhhhccc
Q 021342           56 TEGNLGTISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGE  132 (314)
Q Consensus        56 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-G~k~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~~~~~~~~  132 (314)
                      .+........++..+...++++++|+++||+ |||+++.++.+++.+..+.. +.+ +.+.++++|++.|++.+...++.
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            3333333446788888999999999999999 99999999998887766554 667 88899999999999999998888


Q ss_pred             hhhHhHhhhhhhhhcCCCCccchhhHHHH---HHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 021342          133 GTYLTAAALSHASNHKLHEGTVIGSFNGE---FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (314)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~rg~~~~~---~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (314)
                      .+++++..          ++++|+++.+.   +....++|..+||++++.+.+..     +|++. |.+..++.+++.+.
T Consensus       131 ~~~~~~~~----------~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-----g~~~~-f~~~~~~~~~~~~~  194 (524)
T 2xut_A          131 SSFMGDQF----------DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-----GAAVA-FGIPGVLMFVATVF  194 (524)
T ss_dssp             HHHHHHTC----------STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-----CHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHH-HHHHHHHHHHHHHH
Confidence            88888876          56788766655   88889999999999988877643     47654 44444444444444


Q ss_pred             HHh
Q 021342          210 MCF  212 (314)
Q Consensus       210 ~~~  212 (314)
                      .++
T Consensus       195 ~~~  197 (524)
T 2xut_A          195 FWL  197 (524)
T ss_dssp             HHS
T ss_pred             HHH
Confidence            443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=1.4e-12  Score=122.30  Aligned_cols=265  Identities=13%  Similarity=0.065  Sum_probs=137.1

Q ss_pred             ccchhhhhHHHHHHHHHHHhhH-----hhhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHH
Q 021342           27 TRDVHILSCAFLLIFLAYGAAQ-----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (314)
Q Consensus        27 ~~~~~~l~~~~~~~~~~~~~~~-----~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~  101 (314)
                      .|++..+....++.+.++....     -++++.+.+........++..++..++++++|+++||+|||++++++...+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            3455555555444444433222     12333444333333446788889999999999999999999999998877643


Q ss_pred             HHHh----hhchhh-hHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHH
Q 021342          102 FVAA----NLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (314)
Q Consensus       102 ~~~~----~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li  176 (314)
                      ....    .+.+.. ..++..+.+.|++.+..+++......++.++        .+++++...+.......+|..+||.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~l  157 (417)
T 2cfq_A           86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGASI  157 (417)
T ss_dssp             CHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH--------HHHHHTCCHHHHSSSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------hhhhcccchHHHHHHHHHHHHHHHHH
Confidence            2211    111211 1234566777777776665544444444322        11355666677666678899999999


Q ss_pred             HHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC-CccccccccccccccccchHHHHHHHHHHhhcChhHHHHH
Q 021342          177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK-EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII  255 (314)
Q Consensus       177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lll~  255 (314)
                      ++.+...      +|++. |++..+..++..+..++.+| +++..++++++.+.+++.+    .++..+.+++|+.+.+.
T Consensus       158 ~~~l~~~------~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  226 (417)
T 2cfq_A          158 VGIMFTI------NNQFV-FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS----LKLALELFRQPKLWFLS  226 (417)
T ss_dssp             HHHHHHH------CSHHH-HTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCC----HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHh------chhHH-HHHHHHHHHHHHHHHHHcCccccccccccccccccccccc----HHHHHHHhcCCchhhHH
Confidence            8887653      36554 33333333333333333333 2211111100000111111    12233567788776544


Q ss_pred             HHHHHHhHHHhhhhcccccccc----ccccccchhhHHHHHHhhHhHHHHHHHHHHHHhh
Q 021342          256 PLFAYSGLQQAFVWAEFTKEIV----TPALGVSGVGGAMAVYGAFDAIFLVELLLRWLYF  311 (314)
Q Consensus       256 p~~~~~g~~~~f~~~~~~~~~~----~~~lg~~~ig~~~~~~G~~~~i~~~~~l~~~~~~  311 (314)
                      ...+............+|.++.    ....+....|+...+.++.+++++. ..+|+.|-
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr  285 (417)
T 2cfq_A          227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINR  285 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3322222111222222333321    1123355667777777777777544 55666543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.04  E-value=1e-08  Score=95.72  Aligned_cols=171  Identities=12%  Similarity=-0.033  Sum_probs=112.6

Q ss_pred             cchhhhhHHHHHHHHHHHhhHhhhhhhcCC-CChhH----HHHHHHHHHHHHHHhhHHHHHHhh--chhhHHHHHHHHHH
Q 021342           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGT----ISLGILYTSFTCFSLVASLVVRVL--GSKNALILGTTGYW  100 (314)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~-~~~g~----~~~~~~~~~~~~~~~~~~~l~~~~--G~k~~l~~g~~~~~  100 (314)
                      +++..+.+..++....+.......+....+ .+...    ...++..++..++.++.+.+.||+  |||+.+..+.....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            445555555555554444444333333222 22222    234555566777788899999999  99999888876655


Q ss_pred             -HHHHhh-hc--hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhh-hhHHHHH
Q 021342          101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL  175 (314)
Q Consensus       101 -~~~~~~-~~--~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~G~l  175 (314)
                       +..+.. +.  .+.+.++..-++.|++.+..++....++.+..          |+++||+.+|++.....+ |..+||.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence             333333 33  25666667778889988877766666777764          678899999999999999 9999999


Q ss_pred             HHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 021342          176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (314)
Q Consensus       176 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  214 (314)
                      +.+.+.+..     +++ ..|++..++.+++.++.++++
T Consensus       402 ~~g~l~~~~-----g~~-~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          402 IVGYTVDFF-----GWD-GGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHSS-----CSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHH
Confidence            999887764     354 335555566566655555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.78  E-value=1.1e-07  Score=88.36  Aligned_cols=146  Identities=9%  Similarity=-0.128  Sum_probs=92.9

Q ss_pred             cccchhhhhHHHHHHHHHHHhhHhh------hhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHH
Q 021342           26 YTRDVHILSCAFLLIFLAYGAAQNL------ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (314)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~l------~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~   99 (314)
                      +.+++....+..++....+......      ++..+.+........++..++..++.++.++++||+|||+.+..+.++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3445555555555444443333222      2222322222233355666777888899999999999999999988777


Q ss_pred             HHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHH
Q 021342          100 WLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (314)
Q Consensus       100 ~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~  178 (314)
                      .+..+.. +.++...++ .-++.|++.+..++....+..+..          + ++++...++.. ...+|..+||.+.+
T Consensus       336 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~-~~~~g~~~~~~~~g  402 (438)
T 3o7q_A          336 MALCLISAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNL----------G-QDTKYGSSFIV-MTIIGGGIVTPVMG  402 (438)
T ss_dssp             HHHHHHHHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSC----------G-GGHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhc----------c-ccccchhhHHH-HHHHHHHHHHHHHH
Confidence            6655443 455555544 347888888887766555544432          3 34788777766 66799999999988


Q ss_pred             HHHcCC
Q 021342          179 AVLKDD  184 (314)
Q Consensus       179 ~i~~~~  184 (314)
                      .+.+..
T Consensus       403 ~l~~~~  408 (438)
T 3o7q_A          403 FVSDAA  408 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887653

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.71  E-value=1.8e-07  Score=87.31  Aligned_cols=135  Identities=17%  Similarity=0.085  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      ++..+...++.++.++++||+|||+++..+.++.++..+.. +.++...+++..++.|++.+...+....++++..    
T Consensus       266 ~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----  341 (417)
T 2cfq_A          266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF----  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence            34445566778889999999999999988887776543332 4456666666667777776655555555666664    


Q ss_pred             hhcCCCCccchhhHHHH-HHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh-ccCC
Q 021342          145 SNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF-LRKE  216 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~-~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~  216 (314)
                            |++.||.+.+. +.....+|.++||.+++.+.+..     ++ ...|.+..++.+++.++.++ .||+
T Consensus       342 ------p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-----g~-~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          342 ------EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----GF-QGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             ------CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----HH-HHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             ------CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----Cc-HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence                  67889998888 46777899999999998876543     23 33455556666666555433 4543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.71  E-value=1.4e-07  Score=89.24  Aligned_cols=131  Identities=9%  Similarity=-0.085  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHH-----HHHHHHHHHHHhh-hc---------hhhhHHHHHHHHhhhhhhhhhc
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALI-----LGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWV  130 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~-----~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~~~~~~  130 (314)
                      ++..+...++.++.+.+.||+|||+...     .+.+...+..... ..         .+...++++-++.|++.+...+
T Consensus       326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  405 (491)
T 4aps_A          326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP  405 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence            4555566667778899999999986554     4554443332222 21         2556666778899999998877


Q ss_pred             cchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 021342          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (314)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (314)
                      ....++.+..          |+++||+..|++.....+|..+|+.+.+.+.+..      . ...|....++.+++.++.
T Consensus       406 ~~~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          406 VGLSVTTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS------E-VAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS------T-THHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------H-HHHHHHHHHHHHHHHHHH
Confidence            7777787775          6788999999999999999999999987765432      2 223555555555544444


Q ss_pred             Hhc
Q 021342          211 CFL  213 (314)
Q Consensus       211 ~~l  213 (314)
                      +++
T Consensus       469 ~~~  471 (491)
T 4aps_A          469 VFL  471 (491)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.67  E-value=2.3e-07  Score=87.71  Aligned_cols=143  Identities=13%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHh--h-hc---hhhhHHHHHHHHhhhhhhhhh-ccchhhHh
Q 021342           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-LF---PSWYTMVPASLYLGFAASIIW-VGEGTYLT  137 (314)
Q Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~--~-~~---~~~~~l~~~r~l~G~g~~~~~-~~~~~~i~  137 (314)
                      ..+..+...++.++++.++||+|||+.++.+.....+....  . ..   ++...++ .-.+...+.+..+ +....+.+
T Consensus       318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  396 (491)
T 4gc0_A          318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLS  396 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHH
Confidence            34555666778888999999999999999888766543322  1 11   1222222 2222222222222 23455677


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCC-CCCCCchhHHHHHHHHHHHHHHHH-HHhccC
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTIL-MCFLRK  215 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~  215 (314)
                      |.+          |.+.|++++|+......++..+++.+...+..... ....++ ...|+++.++++++.++ .+++||
T Consensus       397 E~f----------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~-~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          397 EIF----------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN-GFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HSS----------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhC----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHheecC
Confidence            765          77899999999988888888887766443322100 000011 12356666666665554 478999


Q ss_pred             Cccc
Q 021342          216 EEDK  219 (314)
Q Consensus       216 ~~~~  219 (314)
                      |+.+
T Consensus       466 Tkg~  469 (491)
T 4gc0_A          466 TKGK  469 (491)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            8654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.94  E-value=2e-05  Score=71.65  Aligned_cols=62  Identities=10%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHc
Q 021342          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       110 ~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      +.+.+++..++.|++.+..++....++.+..          | ++||+..|++.....+|..+||.+.+.+.+
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  351 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPF----------P-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ  351 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH----------H-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC----------C-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5666667788999999998888888887765          4 789999999999999999999998777754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.67  E-value=5.6e-05  Score=71.91  Aligned_cols=83  Identities=11%  Similarity=-0.027  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHHHhh-hc---------hhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHH
Q 021342           90 NALILGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN  159 (314)
Q Consensus        90 ~~l~~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~  159 (314)
                      +.+.++.++..+..+.. +.         .+.+.++++-++.|++.+...+....++.+..          |+++||+.+
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~  443 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQA----------PKAMKGTIM  443 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHC----------CTTCCTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cHHHHhHHH
Confidence            45666666555433332 21         25566777889999999988888777888775          678999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHc
Q 021342          160 GEFWGMFASHQFVGNLITLAVLK  182 (314)
Q Consensus       160 ~~~~~~~~~g~~~G~li~~~i~~  182 (314)
                      |++.....+|..+||.+.+.+.+
T Consensus       444 g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          444 SFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.81
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.48
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.08
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.89

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.9e-18  Score=159.33  Aligned_cols=230  Identities=10%  Similarity=-0.045  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-h----chhhhHHHHHHHHhhhhhhhhhccchhhHh
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~----~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~  137 (314)
                      ...++..++++++++++|+++||+|||+++.++.+...+..+.. +    ..+...+++.|++.|++.+..+++...+++
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  142 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV  142 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            44678899999999999999999999999999998876654432 2    347788999999999999999988888888


Q ss_pred             HhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 021342          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (314)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  217 (314)
                      ++.          ++++|+++++++.....+|..+|+++++.+.....    +|++.+++......+++++..+++++++
T Consensus       143 ~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         143 HWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             TTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC----CSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHH----------HhhcccccccccccccchhhhhhhhhhhhHhhhhh----cccccchhhhhhHHHHHHHHHHhcccch
Confidence            876          67899999999999999999999998877665432    5776555444444444555556666654


Q ss_pred             cccccc---cccc--cc--c----ccchHHHHHHHHHHhhcChhHHHHHHHHHHHhHHHhhhhccccccccc-cccccch
Q 021342          218 DKGEKE---TADA--SV--N----FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSG  285 (314)
Q Consensus       218 ~~~~~~---~~~~--~~--~----~~~~~~~~~~~~~~~l~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~-~~lg~~~  285 (314)
                      +.++..   +.+.  ..  .    ++.+.++  ....+.++++..+.+....+...........+.|.+... ..++...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (447)
T d1pw4a_         209 QSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK  286 (447)
T ss_dssp             TTTCCCSCTTTCCC-------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH
T ss_pred             hhcccchhhhhhhhcccchhhccccccchhh--HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch
Confidence            321111   0000  00  0    0000011  112245677777666655444444333334445544332 3456777


Q ss_pred             hhHHHHHHhhHhHHHHHHHHHHHH
Q 021342          286 VGGAMAVYGAFDAIFLVELLLRWL  309 (314)
Q Consensus       286 ig~~~~~~G~~~~i~~~~~l~~~~  309 (314)
                      .+....+.++..+++.+ +.+++.
T Consensus       287 ~~~~~~~~~~~~~~~~~-~~g~~~  309 (447)
T d1pw4a_         287 SSWAYFLYEYAGIPGTL-LCGWMS  309 (447)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             hhhhhhcchhhhhhhhh-hhhhhh
Confidence            88888888888777655 344443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=6.9e-13  Score=118.68  Aligned_cols=179  Identities=13%  Similarity=0.088  Sum_probs=108.0

Q ss_pred             cccchhhhhHHHHHHHHHHHhhHh-----hhhhhcCCCChhHHHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHH
Q 021342           26 YTRDVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (314)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~-----l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~  100 (314)
                      +.||++++.+.+++.+.++.....     +.++.+.+...-....++..+...++++++|+++||+|||++++++..+..
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            567888888887776666543332     223333332222233567778888999999999999999999999887776


Q ss_pred             HHHHhh-hch----hhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhhhhcCCCCccchhhHHHHHHHHHhhhhHHHHH
Q 021342          101 LFVAAN-LFP----SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL  175 (314)
Q Consensus       101 ~~~~~~-~~~----~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~G~l  175 (314)
                      +..+.. ..+    .....+..+.+.|.+.+...........+...+        .++++.+..+........+..+|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--------HHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc--------hhhhhHHHHHHHhhhhccccccccc
Confidence            544442 222    223334556666666665544433333332211        2244555667777788889999999


Q ss_pred             HHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 021342          176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (314)
Q Consensus       176 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  218 (314)
                      +++.+....      |++..+.......++.++..+.+++++.
T Consensus       157 ~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         157 IVGIMFTIN------NQFVFWLGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHHC------HHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             ccccccccc------ccccccchhhHHHHHHHHHHHHhccccc
Confidence            988876542      4444444444444444455555665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=4.1e-10  Score=100.17  Aligned_cols=137  Identities=15%  Similarity=0.064  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHHhh-hchhhhHHHHHHHHhhhhhhhhhccchhhHhHhhhhhh
Q 021342           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (314)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  144 (314)
                      +...+...++..+.+.+.||+|+|+.+.++.+...+..+.. +.++.+.+++..++.|++.+..++...+++.+..    
T Consensus       266 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----  341 (417)
T d1pv7a_         266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF----  341 (417)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             cccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence            44445556677788999999999999999998887665554 6778888888899999999999888888888876    


Q ss_pred             hhcCCCCccchhhHHHHHH-HHHhhhhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCcc
Q 021342          145 SNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEED  218 (314)
Q Consensus       145 ~~~~~~~~~~rg~~~~~~~-~~~~~g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~  218 (314)
                            |+++|++..++.. ....+|..+||.+.+.+.+..     +++.. |++..++.++..++ .++++++++
T Consensus       342 ------~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         342 ------EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----GFQGA-YLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             ------CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-----CHHHH-HHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             ------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHH-HHHHHHHHHHHHHHHHHhhcCCCc
Confidence                  6789999999865 456789999999998887654     34433 55555555554444 455665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.4e-08  Score=92.03  Aligned_cols=133  Identities=13%  Similarity=-0.099  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhchhhHHHHHHHHHHHHHH---hh---hchhhhHHHHHHHHhhhhhhhhhccchhhH
Q 021342           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA---AN---LFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (314)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~l~~~~G~k~~l~~g~~~~~~~~~---~~---~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i  136 (314)
                      ...++......++.++++.+.||+++|+..........+...   ..   ...+.+..+++-++.|++.+...+....+.
T Consensus       289 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  368 (447)
T d1pw4a_         289 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA  368 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             hhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335566677778888999999999987654444333222111   11   123556666667778888877766666666


Q ss_pred             hHhhhhhhhhcCCCCccchhhHHHHHHHHHhh-hhHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 021342          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (314)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~G~li~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  211 (314)
                      .+..          |++.||++.|+......+ |.+++|++.+.+.+..     +|+.. ++...++.+++.++..
T Consensus       369 ~~~~----------p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-----g~~~~-~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         369 LELA----------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----GWDGG-FMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----CSHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHH-HHHHHHHHHHHHHHHH
Confidence            6664          678899999998877665 6778899988887765     36443 4444555555544443