Citrus Sinensis ID: 021368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHcccccEEEEccccHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHcccccccccEEEEccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccHHHHHHHHHHccccEEEEEccccHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHcccccccEEEEEcccccccccEEccccccHHHHHHHHHHccccccEEccccHHHHHccccccEEEEEcccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVKKETEKISYfadgkfdkstiadfvfsnklplvtiftrenapsvfespikNQLLLFAvsndseklLPVFEEAAKSFKGKLIFVYVQMdnedvgkpvseyfgitgeapkvlaytgnddakkhildgeLTLDKIKTFGEdflegklkpffksdpipetndgdvkivvgNNFDEIVLDESKDVLLEIYapwcghcqafePTYNKLAKHLRGVDSIVIAKmdgttnehhraksdgfptilffpagnksfdpinvdVDRTVVALYKFLKknasipfkiqkptsapktekptsepkaessdikeshesssdkdvkdel
Flexible Loop (DISEMBL)
mvkketekisyfadgkfdkstiADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKlkpffksdpipetndgdvkIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLkknasipfkiqkptsapktekptsepkaessdikeshesssdkdvkdel
Low Complexity Region (SEG)
MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAessdikeshesssdkdvkdeL
Disordered region (IsUnstruct)
********ISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF*****************************************
Disordered Region (DISOPRED)
MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG*************************KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL**********************************************D**
Disordered Region (DISEMBL)
MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKP************************************
Disordered Region (DISPRO)
*VKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKE*HESSS*K******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9FF55	597	Protein disulfide isomera	yes	no	0.996	0.522	0.680	1e-122
Q8VX13	579	Protein disulfide isomera	no	no	0.955	0.516	0.681	1e-120
Q67IX6	563	Protein disulfide isomera	yes	no	0.980	0.545	0.643	1e-115
P09102	515	Protein disulfide-isomera	yes	no	0.808	0.491	0.416	5e-47
Q66GQ3	534	Protein disulfide isomera	no	no	0.776	0.455	0.364	4e-45
Q5WA72	533	Protein disulfide isomera	no	no	0.849	0.499	0.363	5e-45
P05307	510	Protein disulfide-isomera	yes	no	0.808	0.496	0.404	6e-45
Q17770	493	Protein disulfide-isomera	no	no	0.801	0.509	0.417	6e-45
P21195	509	Protein disulfide-isomera	yes	no	0.811	0.499	0.394	7e-45
Q2HWU2	510	Protein disulfide-isomera	N/A	no	0.801	0.492	0.405	1e-44

>sp|Q9FF55|PDI14_ARATH Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=1 SV=1

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/316 (68%), Positives = 256/316 (81%), Gaps = 4/316 (1%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           +VKKE EKIS+F DG+F KS +  FV +NKL LV++FTRE AP +FES IK QLLLF   
Sbjct: 283 LVKKEEEKISHF-DGEFVKSALVSFVSANKLALVSVFTRETAPEIFESAIKKQLLLFVTK 341

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           N+SEK+L  F+EAAKSFKGKLIFV V +DNED GKPV+EYFG++G  PK++ YTGN+D K
Sbjct: 342 NESEKVLTEFQEAAKSFKGKLIFVSVDLDNEDYGKPVAEYFGVSGNGPKLIGYTGNEDPK 401

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K+  DGE+  DKIK FGEDFL  KLKPF+KSDPIPE ND DVKIVVG+NFDEIVLD+SKD
Sbjct: 402 KYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSDPIPEKNDEDVKIVVGDNFDEIVLDDSKD 461

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLE+YAPWCGHCQA EP YNKLAKHLR +DS+VI KMDGTTNEH +AK++GFPTILFFP
Sbjct: 462 VLLEVYAPWCGHCQALEPMYNKLAKHLRSIDSLVITKMDGTTNEHPKAKAEGFPTILFFP 521

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNK+ +PI VD DRTVVA YKFL+K+A+IPFK++KP S    +   S PK E+++ KES
Sbjct: 522 AGNKTSEPITVDTDRTVVAFYKFLRKHATIPFKLEKPASTESPKTAESTPKVETTETKES 581

Query: 301 HES---SSDKDVKDEL 313
            +S   SS  D KDEL
Sbjct: 582 PDSTTKSSQSDSKDEL 597

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q8VX13|PDI13_ARATH Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana GN=PDIL1-3 PE=2 SV=1

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/308 (68%), Positives = 247/308 (80%), Gaps = 9/308 (2%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           ++KKE EK++ F DG F K+ IA+FV +NK+PLV  FTRE A  +FES +KNQL+LFA +
Sbjct: 279 LLKKEEEKLARF-DGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQLILFAKA 337

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           N+SEK LP   E AKSFKGK +FVYVQMDNED G+ VS +FG+TG APKVL YTGN+D +
Sbjct: 338 NESEKHLPTLREVAKSFKGKFVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVYTGNEDMR 397

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K ILDGELT++ IKT  EDFL  KLKPF+KSDP+PE NDGDVK++VGNNFDEIVLDESKD
Sbjct: 398 KFILDGELTVNNIKTLAEDFLADKLKPFYKSDPLPENNDGDVKVIVGNNFDEIVLDESKD 457

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQ+FEP YNKL K+L+G+DS+V+AKMDGT+NEH RAK+DGFPTILFFP
Sbjct: 458 VLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDSLVVAKMDGTSNEHPRAKADGFPTILFFP 517

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
            GNKSFDPI VDVDRTVV LYKFLKK+ASIPFK++KP         T EP   +    E 
Sbjct: 518 GGNKSFDPIAVDVDRTVVELYKFLKKHASIPFKLEKPA--------TPEPVISTMKSDEK 569

Query: 301 HESSSDKD 308
            E  S KD
Sbjct: 570 IEGDSSKD 577

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q67IX6|PDI14_ORYSJ Protein disulfide isomerase-like 1-4 OS=Oryza sativa subsp. japonica GN=PDIL1-4 PE=2 SV=1

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/314 (64%), Positives = 255/314 (81%), Gaps = 7/314 (2%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           + K+E EK++++ DG F  S IADFV +NKLPLV   T+E APS+F++PIK Q+LLF V+
Sbjct: 256 LKKQEEEKLTFY-DGPFKASAIADFVSANKLPLVNTLTQETAPSIFDNPIKKQILLFVVA 314

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           N+S K LP+F+EA+KSFKGKL+FV+V+ DNE+VG+PV+ YFGITG+   VLAYTGN+DA+
Sbjct: 315 NESSKFLPIFKEASKSFKGKLLFVFVERDNEEVGEPVANYFGITGQETTVLAYTGNEDAR 374

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
              LDGE++++ IK F EDFLE KL PF+KS+P+PE+N+GDVKIVVG N D+IVLDESKD
Sbjct: 375 NFFLDGEISVENIKRFAEDFLEEKLTPFYKSEPVPESNEGDVKIVVGKNLDQIVLDESKD 434

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
            LLEIYAPWCGHCQ  EPTYNKL KHLRG+DS+VIAKMDGT NEH RAK DGFPTILF+P
Sbjct: 435 ALLEIYAPWCGHCQELEPTYNKLGKHLRGIDSLVIAKMDGTANEHPRAKPDGFPTILFYP 494

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKP-TSAPKTEKPTSEPKAESSDIKE 299
           AG KSF+PI  + DRTVV +YKF+KK+ASIPFK+++P +SA KTEK  S     S++++ 
Sbjct: 495 AGKKSFEPITFEGDRTVVEMYKFIKKHASIPFKLKRPDSSATKTEKDQS---TASTNLR- 550

Query: 300 SHESSSDKDVKDEL 313
             E SS  + KDEL
Sbjct: 551 -GERSSGTNFKDEL 563

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P09102|PDIA1_CHICK Protein disulfide-isomerase OS=Gallus gallus GN=P4HB PE=1 SV=3

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/262 (41%), Positives = 158/262 (60%), Gaps = 9/262 (3%)

Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVF 70
           +G   K  + +F+ SN+LPLV  FT + AP +F   IK  +LLF   +VS D E  L  F
Sbjct: 222 EGDLTKDNLLNFIKSNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYEGKLDNF 280

Query: 71  EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGE-L 128
           + AA +FKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  + + L
Sbjct: 281 KTAAGNFKGKILFIFIDSDHSD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDDL 339

Query: 129 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYA 187
           T DKIK F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE+K+V +E YA
Sbjct: 340 TADKIKEFCNKFLEGKIKPHLMSQDLPEDWDKQPVKVLVGKNFEEVAFDENKNVFVEFYA 399

Query: 188 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD 247
           PWCGHC+   P ++KL +  R  ++IVIAKMD T NE    K   FPT+ FFPAG+   +
Sbjct: 400 PWCGHCKQLAPIWDKLGETYRDHENIVIAKMDSTANEVEAVKIHSFPTLKFFPAGSGR-N 458

Query: 248 PINVDVDRTVVALYKFLKKNAS 269
            I+ + +RT+    KFL+    
Sbjct: 459 VIDYNGERTLEGFKKFLESGGQ 480

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase.

Gallus gallus (taxid: 9031)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q66GQ3|PDI16_ARATH Protein disulfide isomerase-like 1-6 OS=Arabidopsis thaliana GN=PDIL1-6 PE=1 SV=1

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 142/244 (58%), Gaps = 1/244 (0%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           +VK E EK + + DG      I +F+ SNK PLVT  T  N   V+ SP+K Q+++F+ +
Sbjct: 258 LVKTEAEKYTSY-DGPCQAEKIVEFLNSNKFPLVTKLTESNTVRVYSSPVKLQVMVFSKT 316

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           +D E L    E+ A+ FK KL+ +Y+ + NE++  P    FGI      V+A   N+   
Sbjct: 317 DDFESLAQPLEDIARKFKSKLMLIYIDISNENLAMPFLTLFGIEDAKKTVVAAFDNNLNS 376

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K++L+ + +   I+ F      G +  ++KS PIP+  +  V  VVG  FDE+VL  S++
Sbjct: 377 KYLLESDPSPSNIEEFCFGLAHGTVSAYYKSQPIPDNQNASVVAVVGRTFDEVVLRSSEN 436

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLE++ PWC +C+A      KL++H +G +++V A++D + NEH +   D +PTIL + 
Sbjct: 437 VLLEVHTPWCINCEALSKQVEKLSQHFKGFENLVFARIDASANEHPKLTVDDYPTILLYK 496

Query: 241 AGNK 244
            G K
Sbjct: 497 TGEK 500

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5WA72|PDI15_ORYSJ Protein disulfide isomerase-like 1-5 OS=Oryza sativa subsp. japonica GN=PDIL1-5 PE=2 SV=1

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/272 (36%), Positives = 156/272 (57%), Gaps = 6/272 (2%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           +VK E EK   F +G F++  I  FV  NK PL+T+FT  N+  V+ SPIK Q+  FA +
Sbjct: 250 LVKSEPEKFEKF-NGAFEEKEIIQFVELNKFPLITVFTDLNSGKVYGSPIKLQVFTFAEA 308

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
            D E L  + +E A+ FK K++ +YV    E + KP    +G+  E P V A+       
Sbjct: 309 YDFEDLESMIQEVARGFKTKIMLIYVDTAEEKLAKPFLTLYGLEPEKPTVTAF-DTSKGT 367

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K++++ E+    ++ F    LEG L P+F+S+P+PE   G ++ VVG  FD  VL+  ++
Sbjct: 368 KYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPE-EKGPIEKVVGRTFDSSVLESPQN 426

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDGFPTILF 238
           V LE++APWC  C+A      KLAKH    G  ++  A++D + NEH + + + +PT+L 
Sbjct: 427 VFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNEHPKLQINNYPTLLL 486

Query: 239 FPAGNKSFDPINVDVDRTVVALYKFLKKNASI 270
           +PA +KS +PI +     +  + KF+K+   I
Sbjct: 487 YPAQDKS-NPIKLSKKSNLKDMAKFVKEKLQI 517

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P05307|PDIA1_BOVIN Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 155/262 (59%), Gaps = 9/262 (3%)

Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVF 70
           +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D E  L  F
Sbjct: 219 EGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYEGKLSNF 277

Query: 71  EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-EL 128
           ++AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  EL
Sbjct: 278 KKAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDEL 336

Query: 129 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYA 187
           T +KI  F   FLEGK+KP   S  +P+  D   VK++VG NF+E+  DE K+V +E YA
Sbjct: 337 TAEKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYA 396

Query: 188 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD 247
           PWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA      
Sbjct: 397 PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADR-T 455

Query: 248 PINVDVDRTVVALYKFLKKNAS 269
            I+ + +RT+    KFL+    
Sbjct: 456 VIDYNGERTLDGFKKFLESGGQ 477

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q17770|PDI2_CAEEL Protein disulfide-isomerase 2 OS=Caenorhabditis elegans GN=pdi-2 PE=1 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 154/261 (59%), Gaps = 10/261 (3%)

Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSE--KLLPVFE 71
           D K  +  +  ++ +N+L LV+ FT+E A  +F   IK+  LLF     SE  KL   F+
Sbjct: 213 DEKLTQDGLKTWIQANRLALVSEFTQETASVIFGGEIKSHNLLFVSKESSEFAKLEQEFK 272

Query: 72  EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT-GEAPKVLAYTGNDDAKKHILD-GELT 129
            AAK FKGK++FVY+  D E+  + + E+FG+   E P +   +  +D  K   D  E+T
Sbjct: 273 NAAKQFKGKVLFVYINTDVEENAR-IMEFFGLKKDELPAIRLISLEEDMTKFKPDFEEIT 331

Query: 130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAP 188
            + I  F +++L+G +KP   S+ IPE  D + VKI+VG NF+++  D +K+VL+E YAP
Sbjct: 332 TENISKFTQNYLDGSVKPHLMSEDIPEDWDKNPVKILVGKNFEQVARDNTKNVLVEFYAP 391

Query: 189 WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAG-NKSFD 247
           WCGHC+   PT++KL +     +SIVIAKMD T NE    K   FPTI FFPAG NK  D
Sbjct: 392 WCGHCKQLAPTWDKLGEKFADDESIVIAKMDSTLNEVEDVKIQSFPTIKFFPAGSNKVVD 451

Query: 248 PINVDVDRTVVALYKFLKKNA 268
                 DRT+    KFL+ N 
Sbjct: 452 YTG---DRTIEGFTKFLETNG 469

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P21195|PDIA1_RABIT Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1

 Score =  181 bits (459), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 151/261 (57%), Gaps = 7/261 (2%)

Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF--AVSNDSEKLLPVFE 71
           +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF    + D +  L  F+
Sbjct: 218 EGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPRSAADHDGKLSGFK 277

Query: 72  EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELT 129
           +AA+ FKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT
Sbjct: 278 QAAEGFKGKILFIFIDSDHAD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELT 336

Query: 130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAP 188
            + I  F + FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAP
Sbjct: 337 AEGITEFCQRFLEGKIKPHLMSQELPEDWDRQPVKVLVGKNFEEVAFDEKKNVFVEFYAP 396

Query: 189 WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDP 248
           WCGHC+   P ++KL +  +    IVIAKMD T NE    K   FPT+ FFPAG      
Sbjct: 397 WCGHCKQLAPIWDKLGETYKEHQDIVIAKMDSTANEVEAVKVHSFPTLKFFPAGPGR-TV 455

Query: 249 INVDVDRTVVALYKFLKKNAS 269
           I+ + +RT+    KFL+    
Sbjct: 456 IDYNGERTLDGFKKFLESGGQ 476

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q2HWU2|PDIA1_MACFU Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 156/264 (59%), Gaps = 13/264 (4%)

Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVF 70
           +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D +  L  F
Sbjct: 219 EGEVTKENLLDFIKYNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYDGKLSNF 277

Query: 71  EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-EL 128
           + AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  EL
Sbjct: 278 KTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDEL 336

Query: 129 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYA 187
           T ++I  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE+K+V +E YA
Sbjct: 337 TAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAFDENKNVFVEFYA 396

Query: 188 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD 247
           PWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA   S D
Sbjct: 397 PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAIKVHSFPTLKFFPA---SVD 453

Query: 248 PINVDV--DRTVVALYKFLKKNAS 269
              +D   +RT+    KFL+    
Sbjct: 454 RTVIDYNGERTLDGFKKFLESGGQ 477

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Macaca fuscata fuscata (taxid: 9543)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
224104643	583	predicted protein [Populus trichocarpa]	0.964	0.518	0.789	1e-139
118485031	461	unknown [Populus trichocarpa]	0.964	0.655	0.785	1e-138
351722913	551	protein disulfide isomerase-like protein	0.958	0.544	0.798	1e-137
356550175	558	PREDICTED: protein disulfide isomerase-l	0.961	0.539	0.792	1e-137
255578860	575	protein disulfide isomerase, putative [R	0.968	0.526	0.770	1e-136
357453901	564	Protein disulfide isomerase L-2 [Medicag	0.980	0.544	0.769	1e-135
449462091	583	PREDICTED: protein disulfide isomerase-l	0.977	0.524	0.769	1e-134
225435313	577	PREDICTED: protein disulfide isomerase-l	0.968	0.525	0.769	1e-133
297746254	462	unnamed protein product [Vitis vinifera]	0.968	0.655	0.769	1e-133
28140231	447	protein disulphide isomerase, partial [E	0.968	0.677	0.723	1e-130

>gi|224104643|ref|XP_002313512.1| predicted protein [Populus trichocarpa] gi|222849920|gb|EEE87467.1| predicted protein [Populus trichocarpa]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 277/313 (88%), Gaps = 11/313 (3%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           M+KKE EK+S F DG F KS IA+FVF+NKLPLVTIFTRE+AP +FES IK QLLLFA+S
Sbjct: 282 MLKKEAEKLSVF-DGNFSKSEIAEFVFANKLPLVTIFTRESAPLIFESTIKKQLLLFAIS 340

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           NDSEK++P+F+EAA+ FKGKLIFVYV+MDNEDVGKPVSEYFGI+G APKVLAYTGNDDAK
Sbjct: 341 NDSEKVVPIFQEAARLFKGKLIFVYVEMDNEDVGKPVSEYFGISGTAPKVLAYTGNDDAK 400

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K + DG++TLDKIK FGEDF+E KLKPFFKSDP+PE+NDGDVKIVVGNNFDEIVLDESKD
Sbjct: 401 KFVFDGDVTLDKIKAFGEDFIEDKLKPFFKSDPVPESNDGDVKIVVGNNFDEIVLDESKD 460

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQ+ EPTYNKLA HLRG++SIVIAKMDGTTNEH RAKSDGFPT+LFFP
Sbjct: 461 VLLEIYAPWCGHCQSLEPTYNKLATHLRGIESIVIAKMDGTTNEHPRAKSDGFPTLLFFP 520

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKSFDPI VD DRTVVA YKF+KK+ASIPFK+QKP SA          KAESSD K+ 
Sbjct: 521 AGNKSFDPITVDTDRTVVAFYKFIKKHASIPFKLQKPASA---------SKAESSDAKDG 571

Query: 301 HESSSDKDVKDEL 313
            ESS+ +DVKDEL
Sbjct: 572 IESST-RDVKDEL 583

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485031|gb|ABK94380.1| unknown [Populus trichocarpa]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 276/313 (88%), Gaps = 11/313 (3%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           M+KKE EK+S F DG F KS IA+FVF+NKLPLVTIFTRE+AP +FES IK QLLLFA+S
Sbjct: 160 MLKKEAEKLSVF-DGNFSKSEIAEFVFANKLPLVTIFTRESAPLIFESTIKKQLLLFAIS 218

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           NDSEK++P+F+EAA+ FKGKLIFVYV+M NEDVGKPVSEYFGI+G APKVLAYTGNDDAK
Sbjct: 219 NDSEKVVPIFQEAARLFKGKLIFVYVEMGNEDVGKPVSEYFGISGTAPKVLAYTGNDDAK 278

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K + DG++TLDKIK FGEDF+E KLKPFFKSDP+PE+NDGDVKIVVGNNFDEIVLDESKD
Sbjct: 279 KFVFDGDVTLDKIKAFGEDFIEDKLKPFFKSDPVPESNDGDVKIVVGNNFDEIVLDESKD 338

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQ+ EPTYNKLA HLRG++SIVIAKMDGTTNEH RAKSDGFPT+LFFP
Sbjct: 339 VLLEIYAPWCGHCQSLEPTYNKLATHLRGIESIVIAKMDGTTNEHPRAKSDGFPTLLFFP 398

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKSFDPI VD DRTVVA YKF+KK+ASIPFK+QKP SA          KAESSD K+ 
Sbjct: 399 AGNKSFDPITVDTDRTVVAFYKFIKKHASIPFKLQKPASA---------SKAESSDAKDG 449

Query: 301 HESSSDKDVKDEL 313
            ESS+ +DVKDEL
Sbjct: 450 IESST-RDVKDEL 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722913|ref|NP_001238028.1| protein disulfide isomerase-like protein precursor [Glycine max] gi|50789207|dbj|BAD34455.1| protein disulfide isomerase-like protein [Glycine max] gi|171854982|dbj|BAG16715.1| protein disulfide isomerase L-2 [Glycine max]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/313 (79%), Positives = 275/313 (87%), Gaps = 13/313 (4%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           +VKKE EK+++F DGKF+KS IADFVFSNKLPLVTIFTRE+APSVFE+PIK QLLLFA S
Sbjct: 252 LVKKEEEKLNHF-DGKFEKSEIADFVFSNKLPLVTIFTRESAPSVFENPIKKQLLLFATS 310

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           NDSEKL+P F+EAAKSFKGKLIFVYV+MDNEDVGKPVSEYFGI+G APKVL YTGNDD K
Sbjct: 311 NDSEKLIPAFKEAAKSFKGKLIFVYVEMDNEDVGKPVSEYFGISGNAPKVLGYTGNDDGK 370

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K +LDGE+T DKIK FG+DFLE KLKPF+KSDP+PE+NDGDVKIVVGNNFDEIVLDESKD
Sbjct: 371 KFVLDGEVTADKIKAFGDDFLEDKLKPFYKSDPVPESNDGDVKIVVGNNFDEIVLDESKD 430

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQA EP Y+KLAKHLR ++S+VIAKMDGTTNEH RAK DGFPT+LFFP
Sbjct: 431 VLLEIYAPWCGHCQALEPIYDKLAKHLRNIESLVIAKMDGTTNEHPRAKPDGFPTLLFFP 490

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKSFDPI VD DRTVVA YKFLKK+ASIPFK+QKPTS       TS+ K  SSD KES
Sbjct: 491 AGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTS-------TSDAKG-SSDAKES 542

Query: 301 HESSSDKDVKDEL 313
             S    DVKDEL
Sbjct: 543 QSS----DVKDEL 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550175|ref|XP_003543464.1| PREDICTED: protein disulfide isomerase-like 1-4-like isoform 1 [Glycine max]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 249/314 (79%), Positives = 275/314 (87%), Gaps = 13/314 (4%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           ++KKE EK+++F DGKF+KS IADFVFSNKLPLVTIFTRE+APSVFE+PIK QLLLFA S
Sbjct: 257 LIKKEEEKLNHF-DGKFEKSAIADFVFSNKLPLVTIFTRESAPSVFENPIKKQLLLFATS 315

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           NDSE L+P F+EAAKSFKGKLIFVYV+MDNEDVGKPVSEYFGI+G APKVL YTGNDD K
Sbjct: 316 NDSETLVPAFKEAAKSFKGKLIFVYVEMDNEDVGKPVSEYFGISGNAPKVLGYTGNDDGK 375

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K +LDGE+T DKIK FGEDF+E KLKPF+KSDP+PE+NDGDVKIVVGNNFDEIVLDESKD
Sbjct: 376 KFVLDGEVTTDKIKAFGEDFVEDKLKPFYKSDPVPESNDGDVKIVVGNNFDEIVLDESKD 435

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQ+ EP YNKLAKHLR +DS+VIAKMDGTTNEH RAK DGFPT+LFFP
Sbjct: 436 VLLEIYAPWCGHCQSLEPIYNKLAKHLRNIDSLVIAKMDGTTNEHPRAKPDGFPTLLFFP 495

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAE-SSDIKE 299
           AGNKSFDPI VD DRTVVA YKFLKK+ASIPFK+QKPTS       TSE  ++ SSD KE
Sbjct: 496 AGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTS-------TSESDSKGSSDAKE 548

Query: 300 SHESSSDKDVKDEL 313
           S  S    DVKDEL
Sbjct: 549 SQSS----DVKDEL 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578860|ref|XP_002530284.1| protein disulfide isomerase, putative [Ricinus communis] gi|223530182|gb|EEF32091.1| protein disulfide isomerase, putative [Ricinus communis]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/314 (77%), Positives = 275/314 (87%), Gaps = 11/314 (3%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           MVK+E EK+SYF DG F KS IADFVF+NKLPLVT FTRE+APS+FESPIK QLLLFA S
Sbjct: 272 MVKREAEKLSYF-DGNFSKSEIADFVFANKLPLVTTFTRESAPSIFESPIKKQLLLFATS 330

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           N+SEK+LPVF++AAK FKGKLIFVYV++DNE+VGKPV++YFGI G+A ++L YTGNDD K
Sbjct: 331 NNSEKVLPVFQDAAKLFKGKLIFVYVELDNEEVGKPVADYFGIVGDASQLLGYTGNDDGK 390

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K + D E+T+DKIK FGEDFLE KLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD
Sbjct: 391 KFVFDAEITMDKIKAFGEDFLEDKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 450

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQA EPT+NKLAKHLRG++S+VIAKMDGTTNEH RAKSDGFPT+LFFP
Sbjct: 451 VLLEIYAPWCGHCQALEPTFNKLAKHLRGIESLVIAKMDGTTNEHPRAKSDGFPTLLFFP 510

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKSFDPI VD DRTVVA YKF+KK+ASIPFK+QKP S PK+         ESS+ K S
Sbjct: 511 AGNKSFDPITVDTDRTVVAFYKFIKKHASIPFKLQKPDSTPKS---------ESSEAKGS 561

Query: 301 HES-SSDKDVKDEL 313
            ++ SS +DVKDEL
Sbjct: 562 PQTESSTEDVKDEL 575

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453901|ref|XP_003597231.1| Protein disulfide isomerase L-2 [Medicago truncatula] gi|355486279|gb|AES67482.1| Protein disulfide isomerase L-2 [Medicago truncatula]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/313 (76%), Positives = 272/313 (86%), Gaps = 6/313 (1%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           +VKKE E++++F DGKFDKS I DFV SNK+PLVT+FTRENAP++FE+PIK Q+LLF  S
Sbjct: 258 LVKKEEEQLNHF-DGKFDKSAIVDFVSSNKIPLVTVFTRENAPTIFENPIKKQVLLFVTS 316

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           NDSEKLLPVF+EA+KSFKGKLIFV V+ DNEDVGKPVS+YFGI+G AP+VLAYTGNDD +
Sbjct: 317 NDSEKLLPVFQEASKSFKGKLIFVLVETDNEDVGKPVSDYFGISGTAPQVLAYTGNDDGR 376

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K + +GE+T DKIK FGEDFLE KLKPFFKSDPIPE+NDGDVKIVVGNNFDEIVLDESKD
Sbjct: 377 KFVFEGEVTGDKIKAFGEDFLEDKLKPFFKSDPIPESNDGDVKIVVGNNFDEIVLDESKD 436

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQ  EP YNKLAKHLR +DS+VIAKMDGT NEH RAKSDGFPT+LFFP
Sbjct: 437 VLLEIYAPWCGHCQHLEPIYNKLAKHLRSIDSLVIAKMDGTQNEHPRAKSDGFPTLLFFP 496

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKSFDPI V+ DRTVVA YKFLK++ASIPFK+QKP S P   KP S    ESSD KE+
Sbjct: 497 AGNKSFDPITVETDRTVVAFYKFLKQHASIPFKLQKPASTP---KPESTDAKESSDAKEN 553

Query: 301 HESSSDKDVKDEL 313
              SS+ DVKDEL
Sbjct: 554 Q--SSNSDVKDEL 564

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462091|ref|XP_004148775.1| PREDICTED: protein disulfide isomerase-like 1-4-like [Cucumis sativus] gi|449519484|ref|XP_004166765.1| PREDICTED: protein disulfide isomerase-like 1-4-like [Cucumis sativus]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/313 (76%), Positives = 276/313 (88%), Gaps = 7/313 (2%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           ++KKE EK+S F DG+F KS I +FVF+NKLPLVT+FT+ENAP +FES IK QL+LFA+S
Sbjct: 278 LLKKEAEKLSRF-DGEFSKSAIVEFVFANKLPLVTMFTKENAPLIFESSIKKQLILFAIS 336

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           ND+EKL+P+FEEAAKSFKGKLIFVYV++DNE+VGKPVSEYFG+ G  P+VL YTGN+D+K
Sbjct: 337 NDTEKLIPIFEEAAKSFKGKLIFVYVEIDNEEVGKPVSEYFGVNGNGPEVLGYTGNEDSK 396

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K +LD E+TL+ IK F E+FLE KLKPF+KSDPIPETNDGDVKIVVG+NFDEIVLDESKD
Sbjct: 397 KFVLDKEVTLENIKAFAENFLEDKLKPFYKSDPIPETNDGDVKIVVGDNFDEIVLDESKD 456

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQA EPTYNKLAKHL GVDS+VIAKMDGTTNEH RAKSDGFPTILFFP
Sbjct: 457 VLLEIYAPWCGHCQALEPTYNKLAKHLHGVDSLVIAKMDGTTNEHPRAKSDGFPTILFFP 516

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKSFDPI VD DRTVVA YKFLKKNASIPFK+QKP S+PK E  +SE K+ S D KES
Sbjct: 517 AGNKSFDPITVDTDRTVVAFYKFLKKNASIPFKLQKPVSSPKAE--SSEGKS-SDDAKES 573

Query: 301 HESSSDKDVKDEL 313
            +S+   D+KDEL
Sbjct: 574 PKST---DLKDEL 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435313|ref|XP_002285136.1| PREDICTED: protein disulfide isomerase-like 1-4 isoform 1 [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/313 (76%), Positives = 276/313 (88%), Gaps = 10/313 (3%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           ++KKE EK+S+F +G F KS IA+FVF+NKLPLVT FTR++AP +FESPIK QLLLFA +
Sbjct: 275 LLKKEAEKLSHF-NGNFTKSAIAEFVFANKLPLVTTFTRDSAPLIFESPIKKQLLLFATA 333

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           NDSEK++P F+EAAKSFKGK+IFVYV+MDNE++G+PVS+YFG+TG+APKVLAYTGNDDA+
Sbjct: 334 NDSEKVVPAFQEAAKSFKGKIIFVYVEMDNEEIGRPVSDYFGVTGDAPKVLAYTGNDDAR 393

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K ILDGE+TLDK+K FGEDFLE K+KPFFKSDPIPE+ND DVKIVVG+NFDEIVLDESKD
Sbjct: 394 KFILDGEVTLDKVKAFGEDFLEDKVKPFFKSDPIPESNDEDVKIVVGDNFDEIVLDESKD 453

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQA EPTYNKLAKHL G++S+VIAKMDGTTNEHHRAKSDGFPT+LFFP
Sbjct: 454 VLLEIYAPWCGHCQALEPTYNKLAKHLHGIESLVIAKMDGTTNEHHRAKSDGFPTLLFFP 513

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKS DPI VD DRTVVALYKFLK +ASIPFK+QKP SA          K E SD KES
Sbjct: 514 AGNKSSDPITVDTDRTVVALYKFLKTHASIPFKLQKPASA---------SKPEGSDAKES 564

Query: 301 HESSSDKDVKDEL 313
            ESSS  D+KDEL
Sbjct: 565 DESSSPSDLKDEL 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746254|emb|CBI16310.3| unnamed protein product [Vitis vinifera]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/313 (76%), Positives = 276/313 (88%), Gaps = 10/313 (3%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           ++KKE EK+S+F +G F KS IA+FVF+NKLPLVT FTR++AP +FESPIK QLLLFA +
Sbjct: 160 LLKKEAEKLSHF-NGNFTKSAIAEFVFANKLPLVTTFTRDSAPLIFESPIKKQLLLFATA 218

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           NDSEK++P F+EAAKSFKGK+IFVYV+MDNE++G+PVS+YFG+TG+APKVLAYTGNDDA+
Sbjct: 219 NDSEKVVPAFQEAAKSFKGKIIFVYVEMDNEEIGRPVSDYFGVTGDAPKVLAYTGNDDAR 278

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K ILDGE+TLDK+K FGEDFLE K+KPFFKSDPIPE+ND DVKIVVG+NFDEIVLDESKD
Sbjct: 279 KFILDGEVTLDKVKAFGEDFLEDKVKPFFKSDPIPESNDEDVKIVVGDNFDEIVLDESKD 338

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQA EPTYNKLAKHL G++S+VIAKMDGTTNEHHRAKSDGFPT+LFFP
Sbjct: 339 VLLEIYAPWCGHCQALEPTYNKLAKHLHGIESLVIAKMDGTTNEHHRAKSDGFPTLLFFP 398

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKES 300
           AGNKS DPI VD DRTVVALYKFLK +ASIPFK+QKP SA          K E SD KES
Sbjct: 399 AGNKSSDPITVDTDRTVVALYKFLKTHASIPFKLQKPASA---------SKPEGSDAKES 449

Query: 301 HESSSDKDVKDEL 313
            ESSS  D+KDEL
Sbjct: 450 DESSSPSDLKDEL 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28140231|gb|AAO26314.1| protein disulphide isomerase, partial [Elaeis guineensis]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/315 (72%), Positives = 265/315 (84%), Gaps = 12/315 (3%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           ++KKE EK+SYF DG+F K+ I DF+F+NKLPLV  FTRE AP +F++PIK Q+LLFAVS
Sbjct: 143 LLKKEAEKLSYF-DGQFTKTAIVDFIFANKLPLVNTFTRETAPLIFDNPIKKQILLFAVS 201

Query: 61  NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           ND+EK++P F EAAK FKGKLIFV+V+ DNEDVGKPVS+YFG+T   PKVLAYTGN+DAK
Sbjct: 202 NDTEKVMPAFPEAAKLFKGKLIFVFVERDNEDVGKPVSDYFGVTEHGPKVLAYTGNEDAK 261

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
           K+ILDGE+TLD ++ F E FLE KLKPF+KSDPIPETNDGDVKIVVGNNFDEIVLDESKD
Sbjct: 262 KYILDGEVTLDSVEKFAEGFLEDKLKPFYKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 321

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
           VLLEIYAPWCGHCQA EPTYNKLAKHLRG++S+VIAKMDGT+NEH RAK DGFPT+LFFP
Sbjct: 322 VLLEIYAPWCGHCQALEPTYNKLAKHLRGIESLVIAKMDGTSNEHPRAKVDGFPTLLFFP 381

Query: 241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPT--SEPKAESSDIK 298
           AGNKSFDP+ VD DRTVVA YKF+KK+A+IPFK+Q+P SA KT+  T  S P        
Sbjct: 382 AGNKSFDPVTVDTDRTVVAFYKFIKKHAAIPFKLQRPASAAKTDSATDGSAPVG------ 435

Query: 299 ESHESSSDKDVKDEL 313
              E S+   VKDEL
Sbjct: 436 ---EKSASTGVKDEL 447

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2082712	579	PDIL1-3 "PDI-like 1-3" [Arabid	0.926	0.500	0.705	2e-111
TAIR|locus:2175811	597	PDIL1-4 "PDI-like 1-4" [Arabid	0.920	0.482	0.703	3.3e-111
UNIPROTKB|P09102	515	P4HB "Protein disulfide-isomer	0.837	0.508	0.411	1.4e-48
UNIPROTKB|F1N9H3	393	P4HB "Protein disulfide-isomer	0.837	0.666	0.411	1.4e-48
UNIPROTKB|F1PL97	510	P4HB "Uncharacterized protein"	0.837	0.513	0.396	8.8e-47
UNIPROTKB|A6H7J6	510	P4HB "Prolyl 4-hydroxylase, be	0.837	0.513	0.4	1.1e-46
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.837	0.513	0.4	1.1e-46
RGD|3244	509	P4hb "prolyl 4-hydroxylase, be	0.837	0.514	0.396	1.8e-46
UNIPROTKB|G8JY07	437	pdi-2 "Protein PDI-2, isoform	0.811	0.581	0.412	1.8e-46
WB|WBGene00003963	493	pdi-2 [Caenorhabditis elegans	0.808	0.513	0.411	3e-46

TAIR|locus:2082712 PDIL1-3 "PDI-like 1-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 206/292 (70%), Positives = 243/292 (83%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             ++KKE EK++ F DG F K+ IA+FV +NK+PLV  FTRE A  +FES +KNQL+LFA +
Sbjct:   279 LLKKEEEKLARF-DGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQLILFAKA 337

Query:    61 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
             N+SEK LP   E AKSFKGK +FVYVQMDNED G+ VS +FG+TG APKVL YTGN+D +
Sbjct:   338 NESEKHLPTLREVAKSFKGKFVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVYTGNEDMR 397

Query:   121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
             K ILDGELT++ IKT  EDFL  KLKPF+KSDP+PE NDGDVK++VGNNFDEIVLDESKD
Sbjct:   398 KFILDGELTVNNIKTLAEDFLADKLKPFYKSDPLPENNDGDVKVIVGNNFDEIVLDESKD 457

Query:   181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
             VLLEIYAPWCGHCQ+FEP YNKL K+L+G+DS+V+AKMDGT+NEH RAK+DGFPTILFFP
Sbjct:   458 VLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDSLVVAKMDGTSNEHPRAKADGFPTILFFP 517

Query:   241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKP-TSAPKTEKPTSEPK 291
              GNKSFDPI VDVDRTVV LYKFLKK+ASIPFK++KP T  P      S+ K
Sbjct:   518 GGNKSFDPIAVDVDRTVVELYKFLKKHASIPFKLEKPATPEPVISTMKSDEK 569

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2175811 PDIL1-4 "PDI-like 1-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
 Identities = 206/293 (70%), Positives = 244/293 (83%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             +VKKE EKIS+F DG+F KS +  FV +NKL LV++FTRE AP +FES IK QLLLF   
Sbjct:   283 LVKKEEEKISHF-DGEFVKSALVSFVSANKLALVSVFTRETAPEIFESAIKKQLLLFVTK 341

Query:    61 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
             N+SEK+L  F+EAAKSFKGKLIFV V +DNED GKPV+EYFG++G  PK++ YTGN+D K
Sbjct:   342 NESEKVLTEFQEAAKSFKGKLIFVSVDLDNEDYGKPVAEYFGVSGNGPKLIGYTGNEDPK 401

Query:   121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
             K+  DGE+  DKIK FGEDFL  KLKPF+KSDPIPE ND DVKIVVG+NFDEIVLD+SKD
Sbjct:   402 KYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSDPIPEKNDEDVKIVVGDNFDEIVLDDSKD 461

Query:   181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
             VLLE+YAPWCGHCQA EP YNKLAKHLR +DS+VI KMDGTTNEH +AK++GFPTILFFP
Sbjct:   462 VLLEVYAPWCGHCQALEPMYNKLAKHLRSIDSLVITKMDGTTNEHPKAKAEGFPTILFFP 521

Query:   241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKP--TSAPKTEKPTSEPK 291
             AGNK+ +PI VD DRTVVA YKFL+K+A+IPFK++KP  T +PKT + T  PK
Sbjct:   522 AGNKTSEPITVDTDRTVVAFYKFLRKHATIPFKLEKPASTESPKTAEST--PK 572

GO:0005576 "extracellular region" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|P09102 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 111/270 (41%), Positives = 162/270 (60%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             + KK  E  + F +G   K  + +F+ SN+LPLV  FT + AP +F   IK  +LLF   
Sbjct:   210 LFKKFDEGRNNF-EGDLTKDNLLNFIKSNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPK 268

Query:    61 N--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGND 117
             +  D E  L  F+ AA +FKGK++F+++  D+ D  + + E+FG+  E  P V   T  +
Sbjct:   269 SVSDYEGKLDNFKTAAGNFKGKILFIFIDSDHSD-NQRILEFFGLKKEECPAVRLITLEE 327

Query:   118 DAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVL 175
             +  K+  + + LT DKIK F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  
Sbjct:   328 EMTKYKPESDDLTADKIKEFCNKFLEGKIKPHLMSQDLPEDWDKQPVKVLVGKNFEEVAF 387

Query:   176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 235
             DE+K+V +E YAPWCGHC+   P ++KL +  R  ++IVIAKMD T NE    K   FPT
Sbjct:   388 DENKNVFVEFYAPWCGHCKQLAPIWDKLGETYRDHENIVIAKMDSTANEVEAVKIHSFPT 447

Query:   236 ILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
             + FFPAG+   + I+ + +RT+    KFL+
Sbjct:   448 LKFFPAGSGR-NVIDYNGERTLEGFKKFLE 476

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

UNIPROTKB|F1N9H3 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 111/270 (41%), Positives = 162/270 (60%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             + KK  E  + F +G   K  + +F+ SN+LPLV  FT + AP +F   IK  +LLF   
Sbjct:    88 LFKKFDEGRNNF-EGDLTKDNLLNFIKSNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPK 146

Query:    61 N--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGND 117
             +  D E  L  F+ AA +FKGK++F+++  D+ D  + + E+FG+  E  P V   T  +
Sbjct:   147 SVSDYEGKLDNFKTAAGNFKGKILFIFIDSDHSD-NQRILEFFGLKKEECPAVRLITLEE 205

Query:   118 DAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVL 175
             +  K+  + + LT DKIK F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  
Sbjct:   206 EMTKYKPESDDLTADKIKEFCNKFLEGKIKPHLMSQDLPEDWDKQPVKVLVGKNFEEVAF 265

Query:   176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 235
             DE+K+V +E YAPWCGHC+   P ++KL +  R  ++IVIAKMD T NE    K   FPT
Sbjct:   266 DENKNVFVEFYAPWCGHCKQLAPIWDKLGETYRDHENIVIAKMDSTANEVEAVKIHSFPT 325

Query:   236 ILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
             + FFPAG+   + I+ + +RT+    KFL+
Sbjct:   326 LKFFPAGSGR-NVIDYNGERTLEGFKKFLE 354

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

UNIPROTKB|F1PL97 P4HB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 107/270 (39%), Positives = 160/270 (59%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             + KK  E  + F +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   
Sbjct:   207 LFKKFDEGRNNF-EGEISKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPK 265

Query:    61 N--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGND 117
             +  D +  L  F++AA+ FKGK++F+++  D+ D  + + E+FG+  E  P V   T  +
Sbjct:   266 SVSDYDSKLSNFKKAAERFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEE 324

Query:   118 DAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVL 175
             +  K+  +  ELT +KI+ F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  
Sbjct:   325 EMTKYKPESTELTAEKIEDFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAF 384

Query:   176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 235
             DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT
Sbjct:   385 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPT 444

Query:   236 ILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
             + FFPA +     I+ + +RT+    KFL+
Sbjct:   445 LKFFPA-SADRTVIDYNGERTLDGFKKFLE 473

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 108/270 (40%), Positives = 160/270 (59%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             + KK  E  + F +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   
Sbjct:   207 LFKKFDEGRNNF-EGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPK 265

Query:    61 N--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGND 117
             +  D E  L  F++AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  +
Sbjct:   266 SVSDYEGKLSNFKKAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEE 324

Query:   118 DAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVL 175
             +  K+  +  ELT +KI  F   FLEGK+KP   S  +P+  D   VK++VG NF+E+  
Sbjct:   325 EMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEVAF 384

Query:   176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 235
             DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT
Sbjct:   385 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPT 444

Query:   236 ILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
             + FFPA +     I+ + +RT+    KFL+
Sbjct:   445 LKFFPA-SADRTVIDYNGERTLDGFKKFLE 473

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 108/270 (40%), Positives = 160/270 (59%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             + KK  E  + F +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   
Sbjct:   207 LFKKFDEGRNNF-EGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPK 265

Query:    61 N--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGND 117
             +  D E  L  F++AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  +
Sbjct:   266 SVSDYEGKLSNFKKAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEE 324

Query:   118 DAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVL 175
             +  K+  +  ELT +KI  F   FLEGK+KP   S  +P+  D   VK++VG NF+E+  
Sbjct:   325 EMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEVAF 384

Query:   176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 235
             DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT
Sbjct:   385 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPT 444

Query:   236 ILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
             + FFPA +     I+ + +RT+    KFL+
Sbjct:   445 LKFFPA-SADRTVIDYNGERTLDGFKKFLE 473

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 107/270 (39%), Positives = 159/270 (58%)

Query:     1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             + KK  E  + F +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   
Sbjct:   207 LFKKFDEGRNNF-EGEITKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPK 265

Query:    61 N--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGND 117
             +  D +  L  F++AA+ FKGK++F+++  D+ D  + + E+FG+  E  P V   T  +
Sbjct:   266 SVSDYDGKLSNFKKAAEGFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEE 324

Query:   118 DAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVL 175
             +  K+  +  ELT +KI  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  
Sbjct:   325 EMTKYKPESDELTAEKITQFCHHFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAF 384

Query:   176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 235
             DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT
Sbjct:   385 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPT 444

Query:   236 ILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
             + FFPA +     I+ + +RT+    KFL+
Sbjct:   445 LKFFPA-SADRTVIDYNGERTLDGFKKFLE 473

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|G8JY07 pdi-2 "Protein PDI-2, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 109/264 (41%), Positives = 156/264 (59%)

Query:     9 ISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSE--KL 66
             I YF D   D +    ++ +N+L LV+ FT+E A  +F   IK+  LLF     SE  KL
Sbjct:   154 IGYFKDTTSDDAKT--WIQANRLALVSEFTQETASVIFGGEIKSHNLLFVSKESSEFAKL 211

Query:    67 LPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT-GEAPKVLAYTGNDDAKKHILD 125
                F+ AAK FKGK++FVY+  D E+  + + E+FG+   E P +   +  +D  K   D
Sbjct:   212 EQEFKNAAKQFKGKVLFVYINTDVEENAR-IMEFFGLKKDELPAIRLISLEEDMTKFKPD 270

Query:   126 -GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLL 183
               E+T + I  F +++L+G +KP   S+ IPE  D + VKI+VG NF+++  D +K+VL+
Sbjct:   271 FEEITTENISKFTQNYLDGSVKPHLMSEDIPEDWDKNPVKILVGKNFEQVARDNTKNVLV 330

Query:   184 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGN 243
             E YAPWCGHC+   PT++KL +     +SIVIAKMD T NE    K   FPTI FFPAG+
Sbjct:   331 EFYAPWCGHCKQLAPTWDKLGEKFADDESIVIAKMDSTLNEVEDVKIQSFPTIKFFPAGS 390

Query:   244 KSFDPINVDVDRTVVALYKFLKKN 267
                  ++   DRT+    KFL+ N
Sbjct:   391 NKV--VDYTGDRTIEGFTKFLETN 412

GO:0006457 "protein folding" evidence=IDA

WB|WBGene00003963 pdi-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 110/267 (41%), Positives = 158/267 (59%)

Query:    12 FADGK--FDKSTIAD----FVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSE- 64
             F DG+  FD+    D    ++ +N+L LV+ FT+E A  +F   IK+  LLF     SE 
Sbjct:   205 FDDGRVAFDEKLTQDGLKTWIQANRLALVSEFTQETASVIFGGEIKSHNLLFVSKESSEF 264

Query:    65 -KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT-GEAPKVLAYTGNDDAKKH 122
              KL   F+ AAK FKGK++FVY+  D E+  + + E+FG+   E P +   +  +D  K 
Sbjct:   265 AKLEQEFKNAAKQFKGKVLFVYINTDVEENAR-IMEFFGLKKDELPAIRLISLEEDMTKF 323

Query:   123 ILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKD 180
               D  E+T + I  F +++L+G +KP   S+ IPE  D + VKI+VG NF+++  D +K+
Sbjct:   324 KPDFEEITTENISKFTQNYLDGSVKPHLMSEDIPEDWDKNPVKILVGKNFEQVARDNTKN 383

Query:   181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 240
             VL+E YAPWCGHC+   PT++KL +     +SIVIAKMD T NE    K   FPTI FFP
Sbjct:   384 VLVEFYAPWCGHCKQLAPTWDKLGEKFADDESIVIAKMDSTLNEVEDVKIQSFPTIKFFP 443

Query:   241 AGNKSFDPINVDVDRTVVALYKFLKKN 267
             AG+     ++   DRT+    KFL+ N
Sbjct:   444 AGSNKV--VDYTGDRTIEGFTKFLETN 468

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0003810 "protein-glutamine gamma-glutamyltransferase activity" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEP

GO:0031545 "peptidyl-proline 4-dioxygenase activity" evidence=IDA

GO:0043412 "macromolecule modification" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0080058 "protein deglutathionylation" evidence=IDA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.4.1	0.824
3rd Layer	5.3.4	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX4753 SubName- Full=Putative uncharacterized protein; (584 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-87
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-48
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-48
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	5e-29
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	9e-28
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	7e-27
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	3e-24
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	2e-18
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	8e-16
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	2e-15
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	1e-14
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	2e-13
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	2e-13
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	2e-13
cd02982	103	cd02982, PDI_b'_family, Protein Disulfide Isomeras	4e-13
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	2e-12
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-12
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-11
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	2e-10
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	7e-10
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	1e-09
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	1e-09
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	5e-08
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	4e-07
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	2e-06
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	2e-05
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	2e-05
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	3e-05
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	4e-05
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	6e-05
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	6e-05
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	7e-05
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	1e-04
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	1e-04
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	0.001
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	0.001

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  268 bits (688), Expect = 2e-87
 Identities = 117/277 (42%), Positives = 161/277 (58%), Gaps = 8/277 (2%)

Query: 2   VKKETEKISYFA-DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA-- 58
            K E EK S    +   D S +  F+ +  LPLV  FT+E A   FES     L      
Sbjct: 186 PKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDE 245

Query: 59  VSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGND 117
             +  E+L   F EAAK F+G   FV   + +E+      EYFG+  E  P V       
Sbjct: 246 SLDPFEELRNRFLEAAKKFRG--KFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEG 303

Query: 118 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDE 177
           + K  +   E + + ++ F +DFL+GKLKP+ KS+PIPE ++G VK++VG NFDEIVLDE
Sbjct: 304 NKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE 363

Query: 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEHHRAKSDGFPTI 236
           +KDVL+E YAPWCGHC+   P Y +LA+  +  +S +VIAKMD T N+    + +GFPTI
Sbjct: 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTI 423

Query: 237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 273
            F PAG KS +P+  D DRT+    KF+ K+A+ P +
Sbjct: 424 KFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHATFPLE 459

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  156 bits (398), Expect = 2e-48
 Identities = 63/104 (60%), Positives = 78/104 (75%), Gaps = 2/104 (1%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           VK+VVG NFDE+VLD  KDVL+E YAPWCGHC+A  P Y +LA+ L+G D++VIAKMD T
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 222 TNEHHRAK-SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 264
            N+       DGFPTILFFPAG+KS +PI  + DRT+  L KF+
Sbjct: 62  ANDVPSEFVVDGFPTILFFPAGDKS-NPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  167 bits (425), Expect = 3e-48
 Identities = 100/281 (35%), Positives = 146/281 (51%), Gaps = 17/281 (6%)

Query: 2   VKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN 61
           + K+ E +  F     ++  + +FV +   PL      EN      S  K+ +     + 
Sbjct: 204 LHKDEEGVELFMGKTKEE--LEEFVSTESFPLFAEINAENYRRYISSG-KDLVWFCGTTE 260

Query: 62  DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK 121
           D +K   V  + A+  + K  FV++  D E  G    E+  I  E P  LAY     A +
Sbjct: 261 DYDKYKSVVRKVARKLREKYAFVWL--DTEQFGSHAKEHLLIE-EFPG-LAYQSP--AGR 314

Query: 122 HILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDE 177
           ++L        +++ +  F +D   GK++   KS+PIPE  DG VK+VVGN F+EIV   
Sbjct: 315 YLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKS 374

Query: 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPT 235
            KDVLLEIYAPWCGHC+  EP YN+L +  +  DSI++AKM+GT NE          FPT
Sbjct: 375 DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434

Query: 236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQK 276
           ILF  AG +   PI  + +RTV    +F+ K+A+ PF+   
Sbjct: 435 ILFVKAGER--TPIPYEGERTVEGFKEFVNKHATNPFEDDT 473

Length = 477

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  106 bits (267), Expect = 5e-29
 Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 5/104 (4%)

Query: 163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 222
             +  +NFDE+V D SKDVL+E YAPWCGHC+A  P Y KLAK L+G   +V+AK+D T 
Sbjct: 1   VELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59

Query: 223 NE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 264
           N          G+PTI  FP G+K  +P+  +  RT+ +L +F+
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSK--EPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  103 bits (259), Expect = 9e-28
 Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 6/106 (5%)

Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 224
           +  +NFDEIVL  +KDVL+E YAPWCGHC+   P Y KLAK L+    IV+AK+D T  +
Sbjct: 1   LTASNFDEIVLS-NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 225 --HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
               R    GFPTI FFP G K   P++ +  R + A+ +F+ + +
Sbjct: 60  DLASRFGVSGFPTIKFFPKGKK---PVDYEGGRDLEAIVEFVNEKS 102

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  101 bits (253), Expect = 7e-27
 Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
           +V  +  +NFD++V D+ KDVL+E YAPWCGHC+   P Y KLA      D +VIAK+D 
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 221 TTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 264
                    +    GFPT+ FFP G+   +P+  +  R +  L KF+
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGST--EPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 94.2 bits (235), Expect = 3e-24
 Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
            VK++   NFDE V    K VL++ YAPWCG C+A  P Y KLA+  +  D +  AK+D 
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK--DDVKFAKVDA 58

Query: 221 TTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
             N    ++    GFPTI FF  G K     +    RT   L  F+KK+
Sbjct: 59  DENPDLASEYGVRGFPTIKFFKNGKK---VSDYVGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
           DV  +  +NFD+ VL+     L+E YAPWCGHC+   P + K AK L+G+  + +  +D 
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI--VKVGAVDA 58

Query: 221 TTNEHHRAKSD----GFPTILFFPAGNKSFDPINVDVDRTVVALYKF 263
               H          GFPTI  F AG  S  P +    RT  A+   
Sbjct: 59  D--VHQSLAQQYGVRGFPTIKVFGAGKNS--PQDYQGGRTAKAIVSA 101

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 73.9 bits (182), Expect = 8e-16
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 8/137 (5%)

Query: 3   KKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSND 62
           K + ++++Y  + K     +  F+  N LPLV  FT ENA  +FES     LLLF   + 
Sbjct: 49  KFDEKQVTYPGEDKTTFDDLKKFIQKNSLPLVGEFTPENAEELFESGK--PLLLFIKKDS 106

Query: 63  S--EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA-PKVLAYTGNDDA 119
              EKL    EE AK FKGK+ F  V  D +  G+ + EY G++    P ++        
Sbjct: 107 EETEKLKNRVEEVAKKFKGKINFATV--DGKSFGRVL-EYLGLSSADLPVIVIVDSASHK 163

Query: 120 KKHILDGELTLDKIKTF 136
           KK+  + E + + +K F
Sbjct: 164 KKYFPEDEFSPESLKEF 180

Length = 183

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 228
           NFD++V + +   L+E YAPWCGHC+  +P Y K AK L G+  +     D   N+    
Sbjct: 9   NFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCG 68

Query: 229 KSD--GFPTILFFPAGNKSFDPINVDV--DRTVVALYKFLK 265
           K    GFPT+  F    K+      D   +R+  A+  F+ 
Sbjct: 69  KYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-IAKMDGTT--- 222
            +NFD  +     +  ++ +APWCGHC+   PT+ +LAK     +  V IAK+D T    
Sbjct: 7   EDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE 64

Query: 223 --NEHHRAKSDGFPTILFFPAGNKS 245
             +E    +  G+PT+L F  G K 
Sbjct: 65  LCSEF---QVRGYPTLLLFKDGEKV 86

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H 226
           +F E+VL+  +  L++ YAPWCG CQA  P   K A+ L+G   + +  +D    E    
Sbjct: 10  DFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQ 67

Query: 227 RAKSDGFPTILFFPAGNKSF 246
           +A    +PTI  +P     +
Sbjct: 68  QANIRAYPTIRLYPGNASKY 87

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG----FP 234
           +  L+ +YAPWC  CQA E +Y +LA+ L G  ++ +AK +    +   AK +     FP
Sbjct: 22  QSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80

Query: 235 TILFFPAGNKSF 246
           TILFFP  ++  
Sbjct: 81  TILFFPKNSRQP 92

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-IAKMD-------G 220
           +F+  +L      L+E YA WCGHC+AF PT+ KLA+ LR    +V +A +D        
Sbjct: 10  SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVA 69

Query: 221 TTNEHHRAKSDGFPTILFFPAGNKSFD 247
              +       G+PT+ +FP  +K   
Sbjct: 70  LCRDF---GVTGYPTLRYFPPFSKEAT 93

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239280 cd02982, PDI_b'_family, Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 41  NAPSVFESPI--KNQLLLFAVSND--SEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKP 96
           NA + F      K  L+LF   +D  SE+L   F+E AK FKGKL+FV V   + D    
Sbjct: 1   NAETFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVV---DADDFGR 57

Query: 97  VSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFL 141
             EYFG+  E   V+A     D KK+++  E LT + ++ F EDFL
Sbjct: 58  HLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive domains are implicated in substrate recognition with the b' domain serving as the primary substrate binding site. Only the b' domain is necessary for the binding of small peptide substrates. In addition to the b' domain, other domains are required for the binding of larger polypeptide substrates. The b' domain is also implicated in chaperone activity. Length = 103

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
           DV  +   +F +  L + K VL+  YAPWCGHC+  +P + K A  L+     V+A +D 
Sbjct: 1   DVVHLTDEDFRKF-LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC 59

Query: 221 TTNEHHRAKSD----GFPTILFFPAGNKSFD 247
           T  EH   K +    GFPT  +F  G     
Sbjct: 60  TKPEHDALKEEYNVKGFPTFKYFENGKFVEK 90

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMD 219
            V ++  + FD+  + E++ VL++ YAPWCGHC+   P Y K AK L+   S IV+A +D
Sbjct: 33  HVTVLTDSTFDKF-ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVD 91

Query: 220 GTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
            T            G+PTI FF  GN    P+N    RT   +  ++KK
Sbjct: 92  ATEEMELAQEFGVRGYPTIKFFNKGN----PVNYSGGRTADGIVSWIKK 136

Length = 477

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEHHR 227
           NFD+  +   + VL+E YAPWCGHC++  P Y K A  L+     I +AK+D T  +   
Sbjct: 10  NFDD-FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLA 68

Query: 228 AKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
            K    G+PT+  F  G  S    + +  R    + K++KK
Sbjct: 69  QKYGVSGYPTLKIFRNGEDS--VSDYNGPRDADGIVKYMKK 107

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 21/109 (19%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH-- 226
           NFDE +    K VL++ +APWCG C+   P   +LAK   G   +   K++   +E+   
Sbjct: 5   NFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLN--VDENPDI 60

Query: 227 --RAKSDGFPTILFFPAGNKSFDPINVDVDRTV-----VALYKFLKKNA 268
             +      PT+L F  G +        VDR+V      AL + + KN 
Sbjct: 61  AAKYGIRSIPTLLLFKNGKE--------VDRSVGALPKAALKQLINKNL 101

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 15/85 (17%)

Query: 175 LDES-KDV------LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-IAKMDGTTNEHH 226
           LD+S KDV      L++ YAPWCGHC+  EP +N++   L+   S V + K+D T   + 
Sbjct: 5   LDDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YS 62

Query: 227 RAKSD----GFPTILFFPAGNKSFD 247
              S+    G+PTI     G+ +++
Sbjct: 63  SIASEFGVRGYPTIKLL-KGDLAYN 86

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 10/75 (13%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 228
            F+E++   +K V+++ +APWCG C+A  P   +LA+       +   K+D   +E+   
Sbjct: 2   EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEY---PKVKFVKVD--VDENPEL 55

Query: 229 KSD----GFPTILFF 239
             +      PT LFF
Sbjct: 56  AEEYGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD----GF 233
            +  L+ +YAPWC  CQA E +Y +LA+ L G   + +AK     ++   AK +     F
Sbjct: 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLGSF 423

Query: 234 PTILFFPAGNKSF 246
           PTIL FP  +   
Sbjct: 424 PTILLFPKNSSRP 436

Length = 457

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 239
            ++ YAPWC HC+   P + +LAK L+G   + +A +D T   +   R    G+PT+L F
Sbjct: 56  FVKFYAPWCSHCRKMAPAWERLAKALKGQ--VNVADLDATRALNLAKRFAIKGYPTLLLF 113

Query: 240 PAG 242
             G
Sbjct: 114 DKG 116

Length = 224

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 175 LDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD-- 231
           L+E K+  L+ +YAPWC  CQA E +Y +LA+ L G   + +AK     ++   AK +  
Sbjct: 367 LEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG-SGVKVAKFRADGDQKEFAKQELQ 425

Query: 232 --GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFL 264
              FPTILFFP    S  PI    + R V +L  F+
Sbjct: 426 LGSFPTILFFP--KHSSRPIKYPSEKRDVDSLMSFV 459

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 175 LDESKDVLLEIYAPWCGHCQAFE------PTYNKLAKHLRGVDSIVIAKMDGTT-NEHHR 227
            +E K +L++  A WC  CQA +      P    LA+        V+ ++D TT + +  
Sbjct: 14  REEGKPLLVDFGADWCPTCQALDRDFLSDPRVKALAEK------FVLLRVDVTTRDPNLL 67

Query: 228 AKSDGFPTILFFPA 241
               G P ++F   
Sbjct: 68  LDGQGVPHVVFLDP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 162 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           +K V   NF++ V+  S++  VL++ +APWCG C+   PT  KLA   +G     +AK++
Sbjct: 25  IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVN 82

Length = 304

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK-----SDGFPTI 236
           L+  YAPWC  CQA  P   +LA   +GV       +D   +     +       G PT+
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKGV---KFEAVDVDEDPALEKELKRYGVGGVPTL 57

Query: 237 LFFPAGNK 244
           + F  G  
Sbjct: 58  VVFGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
            +V  +  +N+  ++  E    ++E YAPWC  CQ  +P + + A     +  I +AK+D
Sbjct: 1   SNVVELTDSNWTLVLEGEW---MIEFYAPWCPACQQLQPEWEEFADWSDDLG-INVAKVD 56

Query: 220 GTTN 223
            T  
Sbjct: 57  VTQE 60

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 14/76 (18%)

Query: 179 KDVLLEIYAPWCGHCQAFEP-TYNKLAKHLRGVDSIVIAKMDGTTN---------EHHRA 228
           K V+L+ YA WC  C+  E  T++        +  +V+ + D T N              
Sbjct: 475 KPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVF 533

Query: 229 KSDGFPTILFFPAGNK 244
              G PT LFF     
Sbjct: 534 ---GVPTYLFFGPQGS 546

Length = 569

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNEHHRAKSDGFPT 235
           K VL++ +APWC  C+A  P   +LA+   G   V ++ +   +              PT
Sbjct: 33  KPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPT 92

Query: 236 ILFF 239
           +L F
Sbjct: 93  LLLF 96

Length = 127

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           DG+V    G   D++ L +   V+++ +APWCG C+ F P +  +A    G   +   K+
Sbjct: 34  DGEVINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKV 90

Query: 219 DGTTNEHHRAKSDGF-----PTILFFPAGNKSFDPIN 250
           +    E  R  S  F     PTI+ F  G +  D +N
Sbjct: 91  N---TEAERELSARFRIRSIPTIMIFKNG-QVVDMLN 123

Length = 139

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 186 YAPWCGHCQAFEPTYNKLAKHLRGVDSI--VIAKMDGTTNEHHRAKSDGFPTILFFPAGN 243
           Y+P C HC    PT+ + AK + GV  I  V    D          S  +P++  FP+G 
Sbjct: 26  YSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS--YPSLYVFPSGM 83

Query: 244 KSFDPINVDVDRTVVALYKF 263
               P     DR+  +L KF
Sbjct: 84  N---PEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 36/75 (48%)

Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 11  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70

Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 71  YGIRGIPTLLLFKNG 85

Length = 109

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 25/83 (30%)

Query: 177 ESKDVLLEIYAPWCGHCQAFE-------PTYNKLAKHLRGVDSIVIAKMDGTTN------ 223
           + K V ++  A WC  C+  E            L K       +V+ + D T N      
Sbjct: 10  QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKD------VVLLRADWTKNDPEITA 63

Query: 224 ---EHHRAKSDGFPTILFFPAGN 243
                      G PT LF+  G 
Sbjct: 64  LLKRFGVF---GPPTYLFYGPGG 83

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---TN 223
           G  FD   L   K VL+  +A WC  C+   PT N+LA        + +A   G      
Sbjct: 10  GEQFDLESLS-GKPVLVYFWATWCPVCRFTSPTVNQLAAD---YPVVSVALRSGDDGAVA 65

Query: 224 EHHRAKSDGFPTI 236
              + K  GFP I
Sbjct: 66  RFMQKKGYGFPVI 78

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 25/87 (28%)

Query: 170 FDEIVLDESKD---------VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
             E VL+ + D           +  YA WC    +F P +N L+     +  + I     
Sbjct: 1   PPEEVLNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAI----- 55

Query: 221 TTNEHHRAKSD--------GFPTILFF 239
              E    K          GFPTIL F
Sbjct: 56  ---EESSIKPSLLSRYGVVGFPTILLF 79

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.95
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.89
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.81
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.8
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.79
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.79
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.79
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.79
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.77
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.77
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.76
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.75
PTZ00102	477	disulphide isomerase; Provisional	99.74
PRK09381	109	trxA thioredoxin; Provisional	99.74
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.74
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.74
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.73
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.73
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.72
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.72
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.71
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.71
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.71
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.71
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.7
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.7
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.69
PHA02278	103	thioredoxin-like protein	99.69
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.68
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.68
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.67
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.67
PRK10996	139	thioredoxin 2; Provisional	99.67
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.66
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.66
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.65
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.65
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.64
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.64
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.64
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.64
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.64
PLN02309	457	5'-adenylylsulfate reductase	99.63
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.62
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.61
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.61
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.61
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.61
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.61
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.6
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.59
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.59
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.59
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.59
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.59
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.58
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.56
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.56
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.56
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.55
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.54
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.53
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.53
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.53
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.53
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.52
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.52
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.5
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.49
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.49
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.48
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.48
PRK09381	109	trxA thioredoxin; Provisional	99.48
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.48
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.48
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.47
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.47
PTZ00051	98	thioredoxin; Provisional	99.47
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.46
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.45
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.44
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.42
PRK10996	139	thioredoxin 2; Provisional	99.42
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.42
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.41
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.41
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.4
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.4
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.4
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.4
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.39
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.39
PTZ00062	204	glutaredoxin; Provisional	99.39
PTZ00062	204	glutaredoxin; Provisional	99.36
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.35
PLN02309	457	5'-adenylylsulfate reductase	99.35
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.35
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.34
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.33
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.33
PHA02278	103	thioredoxin-like protein	99.31
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.31
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.3
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.28
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.27
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.26
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.25
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.25
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.25
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.25
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.25
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.25
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.22
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.22
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	99.22
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.15
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.15
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.14
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.13
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.12
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.11
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.1
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.1
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.09
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.05
PTZ00051	98	thioredoxin; Provisional	99.03
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.02
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.02
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.98
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.98
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.95
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.92
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.92
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.92
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.91
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.91
PHA02125	75	thioredoxin-like protein	98.89
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.88
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.88
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.87
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.84
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.81
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.81
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.79
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.78
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.77
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.77
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.76
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.74
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.73
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.73
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.72
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.7
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.69
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.69
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.66
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.65
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.61
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.61
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.6
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.59
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.58
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.57
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.56
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.53
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.5
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.47
smart00594	122	UAS UAS domain.	98.45
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.42
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.36
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.36
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.35
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.35
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.33
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	98.32
PTZ00056	199	glutathione peroxidase; Provisional	98.3
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.3
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.29
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.28
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.26
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.26
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.25
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.19
PHA02125	75	thioredoxin-like protein	98.16
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.16
PLN02412	167	probable glutathione peroxidase	98.15
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.14
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.14
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.09
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.09
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.09
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.05
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.04
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.03
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.03
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.03
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.02
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.01
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.01
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.99
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.97
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	97.96
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.94
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.94
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.93
PF13728	215	TraF: F plasmid transfer operon protein	97.91
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.91
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.86
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.85
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.82
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.82
PTZ00256	183	glutathione peroxidase; Provisional	97.8
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.79
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.75
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.75
smart00594	122	UAS UAS domain.	97.69
PRK11200	85	grxA glutaredoxin 1; Provisional	97.69
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.68
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	97.67
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.66
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	97.65
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.64
KOG3425	128	consensus Uncharacterized conserved protein [Funct	97.64
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.63
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.61
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.59
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	97.56
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.54
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	97.54
KOG1672	211	consensus ATP binding protein [Posttranslational m	97.51
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.43
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.42
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.42
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.38
KOG1672	211	consensus ATP binding protein [Posttranslational m	97.38
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.36
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.29
PF13728	215	TraF: F plasmid transfer operon protein	97.29
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	97.28
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.26
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.25
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.25
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.24
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.23
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.19
PTZ00056	199	glutathione peroxidase; Provisional	97.16
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.15
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.14
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.07
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.05
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.03
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	96.99
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	96.99
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	96.95
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.94
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	96.94
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	96.93
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	96.93
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	96.91
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	96.9
PLN02412	167	probable glutathione peroxidase	96.9
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	96.87
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.85
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.85
KOG3171	273	consensus Conserved phosducin-like protein [Signal	96.82
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	96.79
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.78
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	96.75
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.75
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	96.73
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	96.7
PRK13190	202	putative peroxiredoxin; Provisional	96.69
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	96.67
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	96.6
PRK10329	81	glutaredoxin-like protein; Provisional	96.6
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	96.59
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.57
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	96.56
KOG3170	240	consensus Conserved phosducin-like protein [Signal	96.45
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	96.44
KOG3170	240	consensus Conserved phosducin-like protein [Signal	96.41
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	96.4
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.38
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.35
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.31
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	96.28
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.24
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.22
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.2
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.18
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.15
COG2143	182	Thioredoxin-related protein [Posttranslational mod	96.13
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	96.13
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	96.13
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.11
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.09
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	96.06
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.06
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	95.91
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	95.83
PTZ00256	183	glutathione peroxidase; Provisional	95.8
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	95.72
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	95.72
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	95.71
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.66
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	95.65
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	95.6
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	95.58
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	95.51
PRK15000	200	peroxidase; Provisional	95.45
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	95.43
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.37
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	95.34
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	95.26
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	95.25
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	95.23
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	95.21
PHA03050	108	glutaredoxin; Provisional	95.2
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	95.19
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.04
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	94.7
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	94.69
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	94.67
PTZ00137	261	2-Cys peroxiredoxin; Provisional	94.65
PRK13191	215	putative peroxiredoxin; Provisional	94.6
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	94.59
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	94.58
KOG3171	273	consensus Conserved phosducin-like protein [Signal	94.54
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	94.51
PRK13599	215	putative peroxiredoxin; Provisional	94.43
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.41
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	94.4
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	94.16
PRK10638	83	glutaredoxin 3; Provisional	94.15
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	94.15
PRK13189	222	peroxiredoxin; Provisional	94.05
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	94.0
KOG2640	319	consensus Thioredoxin [Function unknown]	93.98
PTZ00253	199	tryparedoxin peroxidase; Provisional	93.87
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	93.86
PRK10824	115	glutaredoxin-4; Provisional	93.82
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	93.81
PRK15000	200	peroxidase; Provisional	93.75
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	93.73
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	93.71
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	93.58
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	93.46
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	93.29
PRK11200	85	grxA glutaredoxin 1; Provisional	93.23
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	92.77
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	92.71
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	92.43
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	92.22
PRK13190	202	putative peroxiredoxin; Provisional	92.06
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	91.98
PTZ00137	261	2-Cys peroxiredoxin; Provisional	91.95
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	91.74
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	91.52
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	91.36
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	91.21
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	90.34
PRK10606	183	btuE putative glutathione peroxidase; Provisional	89.75
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	89.74
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	89.48
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	89.05
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	88.93
PRK13189	222	peroxiredoxin; Provisional	88.84
KOG3425	128	consensus Uncharacterized conserved protein [Funct	88.72
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	88.5
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	88.41
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	88.15
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	88.09
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	87.91
PRK13191	215	putative peroxiredoxin; Provisional	87.59
PRK13599	215	putative peroxiredoxin; Provisional	87.15
PTZ00253	199	tryparedoxin peroxidase; Provisional	86.38
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	86.14
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	85.79
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	85.27
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	85.16
PRK10329	81	glutaredoxin-like protein; Provisional	85.01
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	84.51
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	83.57
KOG2640	319	consensus Thioredoxin [Function unknown]	83.34
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	82.75
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	82.41
PHA03075	123	glutaredoxin-like protein; Provisional	82.13
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	81.98
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	81.75
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	80.32

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-40  Score=294.42  Aligned_cols=264  Identities=48%  Similarity=0.786  Sum_probs=239.6

Q ss_pred             CCcccCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC--CchhhhhHHHHHHHHhcc
Q 021368            1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFK   78 (313)
Q Consensus         1 ~~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~   78 (313)
                      |..+.|+..+.| .|.++...|..||+.+++|++..+|.++...++......-++||...  ...+.+.+.+.++|.+|+
T Consensus       207 l~kk~d~~~~~~-~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~  285 (493)
T KOG0190|consen  207 LFKKFDELLVKY-DGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFK  285 (493)
T ss_pred             eccccccchhhc-ccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcc
Confidence            356789999999 99999999999999999999999999999999888666667777765  478999999999999999


Q ss_pred             CeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 021368           79 GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPET  157 (313)
Q Consensus        79 ~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~  157 (313)
                      +++.|+.+|..+   +++.+..||+....+|..+++..+...+|.+... .+.++|..|+.+++.|+++++++|+++|+.
T Consensus       286 ~~l~Fi~~d~e~---~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~  362 (493)
T KOG0190|consen  286 GKLRFILIDPES---FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPED  362 (493)
T ss_pred             cceEEEEEChHH---hhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcc
Confidence            999999997766   5579999999966567555666666677877665 888899999999999999999999999999


Q ss_pred             CC-CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceE
Q 021368          158 ND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI  236 (313)
Q Consensus       158 ~~-~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i  236 (313)
                      ++ .+|+.+.+++|++++.+.+|++||.||||||+||+++.|+|++||..+++.+++.++++|.+.|+.....+.++|||
T Consensus       363 ~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI  442 (493)
T KOG0190|consen  363 NDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTI  442 (493)
T ss_pred             cccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceE
Confidence            97 88999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++|+.|.+. +|+.|+|.++.+.|..||.++..
T Consensus       443 ~~~pag~k~-~pv~y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  443 LFFPAGHKS-NPVIYNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             EEecCCCCC-CCcccCCCcchHHHHhhhccCCC
Confidence            999999887 79999999999999999999975

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=3.1e-33  Score=261.63  Aligned_cols=267  Identities=43%  Similarity=0.738  Sum_probs=230.9

Q ss_pred             CcccCCcc--cccCCCCC--CHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHH
Q 021368            2 VKKETEKI--SYFADGKF--DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAA   74 (313)
Q Consensus         2 ~~~~~~~~--~~y~~g~~--~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a   74 (313)
                      ++..++..  +.| .|+.  +..+|..||..+..|.+.+++..++..++..+ +.+++|+...   ..|+.+...|+++|
T Consensus       184 ~~~~~~~~~~~~~-~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a  261 (462)
T TIGR01130       184 FKPKDEDEKFSKV-DGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAA  261 (462)
T ss_pred             ecccccccccccc-cCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHH
Confidence            34344443  477 7775  56899999999999999999999999888776 5555554433   45899999999999


Q ss_pred             HhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHHHHhcCCCCCCCCCC
Q 021368           75 KSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSD  152 (313)
Q Consensus        75 ~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~~~~~~~~~~~s~  152 (313)
                      .++.+ .+.|+.+||..   ++.+|+.+|+.....|+++++.......|.+.+ ..+.+.|.+|++++++|++++.++|+
T Consensus       262 ~~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se  338 (462)
T TIGR01130       262 KKFRGKFVNFAVADEED---FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSE  338 (462)
T ss_pred             HHCCCCeEEEEEecHHH---hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccC
Confidence            99997 89999999988   568999999996556999998766434667765 79999999999999999999999999


Q ss_pred             CCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCcccccCCCC
Q 021368          153 PIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKSD  231 (313)
Q Consensus       153 ~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~~~~~v~  231 (313)
                      ++|+...+.|..+++++|.+.+.+.+++++|+||++||++|+.+.|.+.+++..+++. ..+.++.+|++.++...+++.
T Consensus       339 ~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~  418 (462)
T TIGR01130       339 PIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVE  418 (462)
T ss_pred             CCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCcc
Confidence            9998878889999999999999888999999999999999999999999999999873 379999999999887559999


Q ss_pred             cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021368          232 GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       232 ~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      ++|++++|++|... .+..|.|..+.+.|.+||.+++..++..
T Consensus       419 ~~Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~~  460 (462)
T TIGR01130       419 GFPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHATFPLEG  460 (462)
T ss_pred             ccCEEEEEeCCCCc-CceEecCcCCHHHHHHHHHhcCCCCCcC
Confidence            99999999999876 5779999999999999999998777654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=5.5e-33  Score=260.98  Aligned_cols=257  Identities=36%  Similarity=0.606  Sum_probs=219.8

Q ss_pred             CcccCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeE
Q 021368            2 VKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKL   81 (313)
Q Consensus         2 ~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v   81 (313)
                      +|+.++....| . ..+.++|..||..+..|.+.+++.+++..++..+.. +++|+.....++.+.+.|+++|+++++++
T Consensus       204 ~~~~~~~~~~~-~-~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  280 (477)
T PTZ00102        204 LHKDEEGVELF-M-GKTKEELEEFVSTESFPLFAEINAENYRRYISSGKD-LVWFCGTTEDYDKYKSVVRKVARKLREKY  280 (477)
T ss_pred             EecCCCCcccC-C-CCCHHHHHHHHHHcCCCceeecCccchHHHhcCCcc-EEEEecCHHHHHHHHHHHHHHHHhccCce
Confidence            45444444444 4 468899999999999999999999999998877653 33333222556789999999999999999


Q ss_pred             EEEEEeCCCcccccc-hhhhhCCCCCCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021368           82 IFVYVQMDNEDVGKP-VSEYFGITGEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIPE  156 (313)
Q Consensus        82 ~f~~vd~~~~~~~~~-l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~~~~~~~~~~s~~~~~  156 (313)
                      .|+.+|++..   +. +++.+|+..+  |++++...+.  +|.+.+.    ++.++|.+|+.++++|++.+.++|+++|+
T Consensus       281 ~f~~vd~~~~---~~~~~~~~gi~~~--P~~~i~~~~~--~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~  353 (477)
T PTZ00102        281 AFVWLDTEQF---GSHAKEHLLIEEF--PGLAYQSPAG--RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPE  353 (477)
T ss_pred             EEEEEechhc---chhHHHhcCcccC--ceEEEEcCCc--ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCC
Confidence            9999999984   34 8899999988  9988876433  4545443    78999999999999999999999999998


Q ss_pred             CCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCc
Q 021368          157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       157 ~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      ...+.|..+++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+++...+.++.+|++.++.  ..+++.++|
T Consensus       354 ~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P  433 (477)
T PTZ00102        354 EQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP  433 (477)
T ss_pred             CCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence            888899999999999998888999999999999999999999999999999876679999999998876  689999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      ++++|++|..  .+..|.|..+.+.|.+||.+++..
T Consensus       434 t~~~~~~~~~--~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        434 TILFVKAGER--TPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             eEEEEECCCc--ceeEecCcCCHHHHHHHHHHcCCC
Confidence            9999998876  356899999999999999999864

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.5e-26  Score=210.64  Aligned_cols=215  Identities=28%  Similarity=0.453  Sum_probs=186.9

Q ss_pred             CCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368           39 RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        39 ~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~  117 (313)
                      ...+.........++|.||++| ++|+++.|.|.+++..+++.+.++.|||+.   +..+|+.|+|.++  |++.+|.++
T Consensus        37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gf--Ptl~~f~~~  111 (383)
T KOG0191|consen   37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGF--PTLKVFRPG  111 (383)
T ss_pred             cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccC--cEEEEEcCC
Confidence            3334445677778999999999 999999999999999999999999999999   7899999999999  999999988


Q ss_pred             CCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhh
Q 021368          118 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG-DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAF  196 (313)
Q Consensus       118 ~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~-~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~  196 (313)
                       ...+.|.|..+.+.+..|+...+.......          .. .|..++..+|...+.+.+.+++|.||+|||++|+.+
T Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l  180 (383)
T KOG0191|consen  112 -KKPIDYSGPRNAESLAEFLIKELEPSVKKL----------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKL  180 (383)
T ss_pred             -CceeeccCcccHHHHHHHHHHhhccccccc----------cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhc
Confidence             567889999999999999998876333221          22 488999999999998899999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          197 EPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       197 ~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      .+.|.+++..+.....+.++.+||+....  ..+++.++|++.+|+.|..  .+..|.|.++.+.|.+|+++.....
T Consensus       181 ~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  181 APEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             ChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccccccccHHHHHHHHHhhcCCC
Confidence            99999999999765589999999984443  7889999999999999887  2337888999999999999997654

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.89  E-value=9.7e-22  Score=165.01  Aligned_cols=186  Identities=11%  Similarity=0.057  Sum_probs=142.2

Q ss_pred             ccEEEEEe---eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368           51 KNQLLLFA---VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  125 (313)
Q Consensus        51 ~~~v~f~~---~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~  125 (313)
                      ..+++|++   +| ++|+.+.|.+++++..+.+ .+.++.+|.++   ++.++++|+|.++  |++++|++|.....++.
T Consensus        21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~---~~~l~~~~~V~~~--Pt~~~f~~g~~~~~~~~   95 (215)
T TIGR02187        21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE---DKEEAEKYGVERV--PTTIILEEGKDGGIRYT   95 (215)
T ss_pred             eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc---cHHHHHHcCCCcc--CEEEEEeCCeeeEEEEe
Confidence            34666888   89 9999999999999999965 24455555445   6799999999999  99999988764445788


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHH
Q 021368          126 GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLA  204 (313)
Q Consensus       126 g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la  204 (313)
                      |..+.+.+..|+..++.-...               ...++.++.+. +...+++ .++.||++||++|+.+.+.+..++
T Consensus        96 G~~~~~~l~~~i~~~~~~~~~---------------~~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~  159 (215)
T TIGR02187        96 GIPAGYEFAALIEDIVRVSQG---------------EPGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFA  159 (215)
T ss_pred             ecCCHHHHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHH
Confidence            999999999999988641100               11233333333 3334455 555699999999999999999998


Q ss_pred             HHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          205 KHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       205 ~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      ...   +.+.+..+|.+.+..  .++++.++|+++++.+|.      .+.|....+.|.+||..
T Consensus       160 ~~~---~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~------~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       160 LAN---DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE------EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             Hhc---CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE------EEECCCCHHHHHHHHHh
Confidence            773   258888999988776  789999999999986543      38888889999999864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.81  E-value=1.8e-19  Score=134.60  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=89.7

Q ss_pred             CCCeEEEcCcChHHHh--hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcC
Q 021368          159 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGF  233 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l--~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~  233 (313)
                      ...|..++..+|++.+  .+.++.++|.||++||++|+.+.|.|.++|..+++  .+.|+++||+.+..   .+++|.++
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~   85 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF   85 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence            3678999999999973  47789999999999999999999999999999976  59999999998864   47999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      ||+++|++|..   +..|.|..+.+.|..|+
T Consensus        86 PTl~lf~~g~~---~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          86 PVIHLYYRSRG---PIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             CEEEEEECCcc---ceEEeCCCCHHHHHhhC
Confidence            99999998875   35899999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.80  E-value=5.6e-19  Score=130.42  Aligned_cols=97  Identities=25%  Similarity=0.547  Sum_probs=87.3

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      .|..++.++|++.+ ..+++++|+||++||++|+.+.|.|.++++.+++  .+.|+.+||+.+..  .++++.++|++++
T Consensus         2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            46789999999988 4568999999999999999999999999999986  59999999998766  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHH
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKF  263 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~f  263 (313)
                      |++|....   .|.|..+.+.|.+|
T Consensus        79 ~~~g~~~~---~~~G~~~~~~l~~f  100 (101)
T cd03003          79 FPSGMNPE---KYYGDRSKESLVKF  100 (101)
T ss_pred             EcCCCCcc---cCCCCCCHHHHHhh
Confidence            99987653   89999999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.79  E-value=5.8e-19  Score=130.65  Aligned_cols=101  Identities=32%  Similarity=0.651  Sum_probs=93.8

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..++.++|++.+.+.+++++|+||++||++|+.+.+.|.+++..+.+  .+.++.+|++.+..  .++++.++|++++|
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            567999999999977689999999999999999999999999999987  79999999998865  89999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      ++|....   +|.|..+.+.|.+||++|
T Consensus        79 ~~g~~~~---~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGKEVK---RYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTEEEE---EEESSSSHHHHHHHHHHH
T ss_pred             ECCcEEE---EEECCCCHHHHHHHHHcC
Confidence            9999874   999999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.79  E-value=4.6e-19  Score=131.62  Aligned_cols=100  Identities=28%  Similarity=0.589  Sum_probs=88.7

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      .|..++.++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+.+  .+.++.+||+.+..  .+++|.++|++++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            4678999999999888888999999999999999999999999999865  69999999999876  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcC-HHHHHHHH
Q 021368          239 FPAGNKSFDPINVDVDRT-VVALYKFL  264 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~-~~~l~~fi  264 (313)
                      |++|..  ....|.|..+ .+.|.+||
T Consensus        80 ~~~g~~--~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNAS--KYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EcCCCC--CceEccCCCCCHHHHHhhC
Confidence            998833  3458999876 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4e-19  Score=135.23  Aligned_cols=104  Identities=23%  Similarity=0.416  Sum_probs=96.1

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      .+..++..+|++.+.+.+.||+|.|||+||++|+.+.|.+++++..+.+  .+.++++|.+.+..  .+|+|..+|++++
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv  121 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV  121 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence            4556888999999999999999999999999999999999999999977  79999999999877  7999999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      |++|...+   .+.|..+.+.|.+||++.+.
T Consensus       122 fknGe~~d---~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  122 FKNGEKVD---RFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EECCEEee---eecccCCHHHHHHHHHHHhc
Confidence            99999876   89999999999999998764

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.79  E-value=1e-18  Score=129.69  Aligned_cols=103  Identities=61%  Similarity=1.093  Sum_probs=92.1

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEE
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF  239 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~  239 (313)
                      +|..|++++|++.+.+.+++++|+||++||++|+.+.+.|.+++..+++..++.++.+|++.++. ..+++.++|++++|
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF   80 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence            37889999999999877899999999999999999999999999999875579999999998865 57788999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHH
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      ++|... .+..|.|..+...|.+||
T Consensus        81 ~~~~~~-~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKS-NPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcC-CceEccCCcCHHHHHhhC
Confidence            988843 456899999999999986

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.77  E-value=1.9e-18  Score=129.21  Aligned_cols=101  Identities=25%  Similarity=0.500  Sum_probs=88.3

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC----CcEEEEEEeCCCccc--ccCCCCcCc
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~----~~v~~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      .|..+++++|++.+ +.+++++|.||++||++|+.+.|.|.+++..+++.    ..+.++.+||+.+..  .++++.++|
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            47789999999977 66789999999999999999999999999987542    258999999998866  789999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      ++++|++|...  ...|.|..+.+.|.+||
T Consensus        81 tl~~~~~g~~~--~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMM--KREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCc--ceecCCCCCHHHHHhhC
Confidence            99999999852  35899999999999986

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.8e-17  Score=150.36  Aligned_cols=214  Identities=15%  Similarity=0.162  Sum_probs=160.0

Q ss_pred             CCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCC
Q 021368           30 KLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ....|..|+.++|+.++......+|.||+|| +||++++|.+.++|..++.   .+..+.|||+.   +..+|++|+|++
T Consensus        23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~---~~~~~~~y~v~g   99 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE---ESDLASKYEVRG   99 (493)
T ss_pred             cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch---hhhhHhhhcCCC
Confidence            3568999999999999999888899999999 9999999999999999997   59999999999   569999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcChHHHhhcCCCcEEEE
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDVLLE  184 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~l~~~~k~~lv~  184 (313)
                      |  ||+.+|++|.. +..|.|.++.+.|..|+.+..+                 +.+..|. .+.....+ .....++|-
T Consensus       100 y--PTlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~g-----------------Pa~~~l~~~~~a~~~l-~~~~~~vig  158 (493)
T KOG0190|consen  100 Y--PTLKIFRNGRS-AQDYNGPREADGIVKWLKKQSG-----------------PASKTLKTVDEAEEFL-SKKDVVVIG  158 (493)
T ss_pred             C--CeEEEEecCCc-ceeccCcccHHHHHHHHHhccC-----------------CCceecccHHHHHhhc-cCCceEEEE
Confidence            9  99999999875 6789999999999999999765                 2334454 45555555 445556666


Q ss_pred             EeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCC--CcCceEEEEeCCCCCcCceeeccCcCHHHHHH
Q 021368          185 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKS--DGFPTILFFPAGNKSFDPINVDVDRTVVALYK  262 (313)
Q Consensus       185 fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v--~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~  262 (313)
                      |+...-+.    ...+...+..+.+  .+.|+ +-.+....+.+..  .+.|.+++++....  ....|.|..+.+.|.+
T Consensus       159 ~F~d~~~~----~~~~~~~a~~l~~--d~~F~-~ts~~~~~~~~~~~~~~~~~i~l~kk~d~--~~~~~~~~~~~~~l~~  229 (493)
T KOG0190|consen  159 FFKDLESL----AESFFDAASKLRD--DYKFA-HTSDSDVAKKLELNTEGTFPIVLFKKFDE--LLVKYDGSFTPELLKK  229 (493)
T ss_pred             Eecccccc----hHHHHHHHHhccc--cceee-ccCcHhHHhhccCCCCCcceEEecccccc--chhhcccccCHHHHHH
Confidence            66543322    1455666666665  57787 2222222244433  34666778766554  3346778899999999


Q ss_pred             HHHhcCCCCccccC
Q 021368          263 FLKKNASIPFKIQK  276 (313)
Q Consensus       263 fi~~~~~~~~~~~~  276 (313)
                      ||..+.-+.+.-..
T Consensus       230 Fi~~~~~plv~~ft  243 (493)
T KOG0190|consen  230 FIQENSLPLVTEFT  243 (493)
T ss_pred             HHHHhcccccceec
Confidence            99998755544433

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.76  E-value=5.2e-18  Score=127.55  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=93.5

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCcc--ch--hhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  232 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~--C~--~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~  232 (313)
                      ...|..++.++|++.+.+.+.+++++||++||++  |+  .+.|.+.++|..+-...++.|+++|++.+..  ++|+|.+
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~   87 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE   87 (120)
T ss_pred             CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence            4568889999999999988999999999999987  99  8889999999887222269999999999876  8999999


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +||+++|++|..+    .|.|..+.+.|.+||.+..
T Consensus        88 iPTl~lfk~G~~v----~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          88 EDSIYVFKDDEVI----EYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccEEEEEECCEEE----EeeCCCCHHHHHHHHHHHh
Confidence            9999999999864    6999999999999998763

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.75  E-value=7.9e-18  Score=126.05  Aligned_cols=101  Identities=34%  Similarity=0.655  Sum_probs=88.6

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCCcCceEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~v~~~P~i~  237 (313)
                      |..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.++++.+.+  .+.++.+||+.  +..  .++++.++|+++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            678999999999988889999999999999999999999999999876  68899999998  433  689999999999


Q ss_pred             EEeCCCCC--cCceeeccCcCHHHHHHHH
Q 021368          238 FFPAGNKS--FDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       238 ~~~~g~~~--~~~~~y~g~~~~~~l~~fi  264 (313)
                      +|++|..+  ..+..|.|..+.+.|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            99988631  1345899999999999998

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.74  E-value=1.3e-16  Score=150.08  Aligned_cols=227  Identities=15%  Similarity=0.187  Sum_probs=169.0

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+..|+.++|+..+..+..++|.||++| ++|+++.|.|.+++..+.+   .+.|+.|||+.   +..+|++|+|.++ 
T Consensus        32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~---~~~l~~~~~i~~~-  107 (477)
T PTZ00102         32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE---EMELAQEFGVRGY-  107 (477)
T ss_pred             CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC---CHHHHHhcCCCcc-
Confidence            46789999999999888888999999999 9999999999999988753   59999999998   6699999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCC--------------------CC--------------
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKS--------------------DP--------------  153 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s--------------------~~--------------  153 (313)
                       |++.+|++|..  ..|.|.++.+.|.+|+.+.++..+......                    ..              
T Consensus       108 -Pt~~~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~  184 (477)
T PTZ00102        108 -PTIKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKH  184 (477)
T ss_pred             -cEEEEEECCce--EEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhc
Confidence             99999988753  378999999999999998875433211100                    00              


Q ss_pred             -------------------------CC---C-------------CCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCcc
Q 021368          154 -------------------------IP---E-------------TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH  192 (313)
Q Consensus       154 -------------------------~~---~-------------~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~  192 (313)
                                               ..   .             ..-+.+..++.+++..++ ..+.++++++.  -|..
T Consensus       185 ~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~  261 (477)
T PTZ00102        185 REHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYI-SSGKDLVWFCG--TTED  261 (477)
T ss_pred             cccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHh-cCCccEEEEec--CHHH
Confidence                                     00   0             001234556666666655 34444433332  3555


Q ss_pred             chhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcCceEEEEeCCCCCcCceeeccC----cCHHHHHHHHH
Q 021368          193 CQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVD----RTVVALYKFLK  265 (313)
Q Consensus       193 C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~P~i~~~~~g~~~~~~~~y~g~----~~~~~l~~fi~  265 (313)
                      ...+.+.+.++|+++++  ++.|+.+|+.....   ..+++..+|++++...+.+.    .+.+.    .+.+.|.+|++
T Consensus       262 ~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y----~~~~~~~~~~~~~~l~~Fv~  335 (477)
T PTZ00102        262 YDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRY----LLPPAKESFDSVEALIEFFK  335 (477)
T ss_pred             HHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCccc----CCCccccccCCHHHHHHHHH
Confidence            66788999999999987  68999999998653   58899999998887533322    33332    67999999999


Q ss_pred             hcCCCCccc
Q 021368          266 KNASIPFKI  274 (313)
Q Consensus       266 ~~~~~~~~~  274 (313)
                      +....+...
T Consensus       336 ~~~~gk~~~  344 (477)
T PTZ00102        336 DVEAGKVEK  344 (477)
T ss_pred             HHhCCCCCc
Confidence            988765544

>PRK09381 trxA thioredoxin; Provisional

Probab=99.74  E-value=2.4e-17  Score=123.46  Aligned_cols=104  Identities=25%  Similarity=0.506  Sum_probs=93.7

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|+.+++++|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+.+  .+.++.+|++.+..  .++++.++|+++
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   80 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence            56888999999998877789999999999999999999999999999976  68999999998876  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|..+.   .+.|..+.+.|..||.+++
T Consensus        81 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         81 LFKNGEVAA---TKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEeCCeEEE---EecCCCCHHHHHHHHHHhc
Confidence            999888754   7889889999999998875

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.74  E-value=1.9e-17  Score=122.65  Aligned_cols=99  Identities=35%  Similarity=0.670  Sum_probs=89.3

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..+++.+|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+.+  .+.++.+|++.+..  +++++.++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            577899999999877778899999999999999999999999999876  69999999998876  79999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHH
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      ++|..  .+..|.|..+.+.|.+|+
T Consensus        80 ~~~~~--~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKN--SPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCCc--ceeecCCCCCHHHHHHHh
Confidence            98844  466899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.74  E-value=1.8e-17  Score=122.32  Aligned_cols=98  Identities=26%  Similarity=0.457  Sum_probs=84.8

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      .|..++.++|++.+.  + .++|.||++||++|+.+.|.|.+++..++.. .+.++.+|++.+..  .++++.++|++++
T Consensus         2 ~v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02994           2 NVVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEPGLSGRFFVTALPTIYH   77 (101)
T ss_pred             ceEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence            478899999998763  3 3899999999999999999999999987542 59999999998765  6899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      |++|..    ..|.|..+.+.|.+||++
T Consensus        78 ~~~g~~----~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          78 AKDGVF----RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             eCCCCE----EEecCCCCHHHHHHHHhC
Confidence            988863    289999999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.73  E-value=5.6e-17  Score=135.46  Aligned_cols=184  Identities=12%  Similarity=0.156  Sum_probs=132.7

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCcee
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH  122 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~  122 (313)
                      +...-|+|.||+|| +||+++.|+|.++...+++   -++++++||+.   .+.++.+|||++|  |||.+++++.  .+
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~---f~aiAnefgiqGY--PTIk~~kgd~--a~  113 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR---FPAIANEFGIQGY--PTIKFFKGDH--AI  113 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc---chhhHhhhccCCC--ceEEEecCCe--ee
Confidence            44557899999999 9999999999999999996   39999999999   5699999999999  9999999875  67


Q ss_pred             ccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcCh-HHHhhcCCCcEEEEEeCCCCccchhhhHHHH
Q 021368          123 ILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNF-DEIVLDESKDVLLEIYAPWCGHCQAFEPTYN  201 (313)
Q Consensus       123 ~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f-~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~  201 (313)
                      .|.|.++.+.|..|..+..+.                 -+..++.+.. ...+....++.+|+|.+.-.    .+...+.
T Consensus       114 dYRG~R~Kd~iieFAhR~a~a-----------------iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~----PL~d~fi  172 (468)
T KOG4277|consen  114 DYRGGREKDAIIEFAHRCAAA-----------------IIEPINENQIEFEHLQARHQPFFVFFGTGEG----PLFDAFI  172 (468)
T ss_pred             ecCCCccHHHHHHHHHhcccc-----------------eeeecChhHHHHHHHhhccCceEEEEeCCCC----cHHHHHH
Confidence            899999999999999998652                 2233444222 23344567899998886432    2333444


Q ss_pred             HHHHHhcCCCcEEEEEEeC-CCccc-ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          202 KLAKHLRGVDSIVIAKMDG-TTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       202 ~la~~~~~~~~v~~~~vd~-~~~~~-~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ..|+.     .+.++++-. +.... ..-.....|++.+|++...     ......+.+.|..||+..-
T Consensus       173 dAASe-----~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf-----~i~de~dd~dLseWinRER  231 (468)
T KOG4277|consen  173 DAASE-----KFSVARFFSASEEVAPEENDAKEMPAVAVFKDETF-----EIEDEGDDEDLSEWINRER  231 (468)
T ss_pred             HHhhh-----heeeeeeeccccccCCcccchhhccceEEEcccee-----EEEecCchhHHHHHHhHhh
Confidence            44432     233333332 22222 3445678899999988654     2223346688999998764

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.73  E-value=3.3e-17  Score=122.59  Aligned_cols=101  Identities=32%  Similarity=0.676  Sum_probs=86.3

Q ss_pred             CeEEEcCcChHHHhh--cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-cc---ccCCCCcCc
Q 021368          161 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EH---HRAKSDGFP  234 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~--~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~~---~~~~v~~~P  234 (313)
                      .|..++.++|+.++.  +.+++++|.||++||++|+.+.+.|.+++..+++. ++.++.+|++.+ ..   +.+++.++|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccchhhHHhhcCCCcCC
Confidence            477899999999884  45789999999999999999999999999999853 599999999974 22   358999999


Q ss_pred             eEEEEeCCCCCcCceeeccC-cCHHHHHHHH
Q 021368          235 TILFFPAGNKSFDPINVDVD-RTVVALYKFL  264 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi  264 (313)
                      ++++|++|..  .+..|.|. ++.+.|+.||
T Consensus        81 ti~~f~~~~~--~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSR--QPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCC--CceeccCCCCCHHHHHhhC
Confidence            9999988765  45689995 7999999986

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.72  E-value=4.1e-17  Score=120.57  Aligned_cols=98  Identities=33%  Similarity=0.669  Sum_probs=85.6

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC-CCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      +..+++++|++.+.+ + +++|+||++||++|+.+.|.|.+++..+++ ...+.++.+||+.+..  +++++.++|++++
T Consensus         2 ~~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            567899999998843 3 599999999999999999999999999976 3469999999998765  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      |++|....   .|.|..+.+.|.+||
T Consensus        80 ~~~g~~~~---~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGEKVD---KYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCCeee---EeeCCCCHHHHHhhC
Confidence            99887543   899999999998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.72  E-value=7.1e-17  Score=119.86  Aligned_cols=101  Identities=44%  Similarity=0.864  Sum_probs=88.9

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-ccc--ccCCCCcCceEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFPTILF  238 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~--~~~~v~~~P~i~~  238 (313)
                      |..+++++|++.+.+.+++++|+||++||++|+.+.+.|..++..++....+.++.+|++. +..  .++++.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            5678999999988777789999999999999999999999999999854579999999999 654  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      |.+|..  ....|.|..+.+.|.+||
T Consensus        82 ~~~~~~--~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGST--EPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCC--CccccCCccCHHHHHhhC
Confidence            988754  345899999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=4.1e-17  Score=137.43  Aligned_cols=106  Identities=27%  Similarity=0.506  Sum_probs=98.0

Q ss_pred             CCeEEEcCcChHHHhhcC--CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          160 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~--~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      ..|+++|..+|...+...  .+||+|+||+|||++|+.+.|.+.+++..+++  .+.+++|||+....  ..|+|.++|+
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence            448999999999988644  46999999999999999999999999999998  79999999999887  7999999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      +++|++|..+.   .|.|....+.|.+||.++++.
T Consensus       101 V~af~dGqpVd---gF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         101 VYAFKDGQPVD---GFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EEEeeCCcCcc---ccCCCCcHHHHHHHHHHhcCh
Confidence            99999999987   999999999999999999876

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.71  E-value=3.1e-17  Score=123.03  Aligned_cols=99  Identities=19%  Similarity=0.395  Sum_probs=84.7

Q ss_pred             EEcCcChHHHhhc--CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          164 IVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       164 ~l~~~~f~~~l~~--~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      .++.++|.+.+..  .+++++|+||++||++|+.+.|.|.+++..+++. ++.++.+|++.+..  .+++|.++|++++|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            3566778765543  5789999999999999999999999999999753 58999999998665  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      ++|+.+.   .+.|..+.+.|.+||.+
T Consensus        87 ~~g~~~~---~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          87 INGQVTF---YHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ECCEEEE---EecCCCCHHHHHHHHhc
Confidence            9887643   67898899999999976

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.71  E-value=4.6e-16  Score=145.71  Aligned_cols=217  Identities=17%  Similarity=0.209  Sum_probs=159.0

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .|..|+.++|+..+..+..++|.||++| ++|+++.|.|.++|..+.+   .+.|+.|||+.   +..+|+++||.++  
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~--   76 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE---EKDLAQKYGVSGY--   76 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC---cHHHHHhCCCccc--
Confidence            4678999999999888888899999999 9999999999999998875   39999999998   5699999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcChHHHhhcCCCcEEEEEeC
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDVLLEIYA  187 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~l~~~~k~~lv~fy~  187 (313)
                      |+++++.+|......|.|.++.++|.+|+.+.+.                 ..+..++ .++++.++.. ....+|.|+.
T Consensus        77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~-----------------~~~~~i~~~~~~~~~~~~-~~~~vi~~~~  138 (462)
T TIGR01130        77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG-----------------PAVKEIETVADLEAFLAD-DDVVVIGFFK  138 (462)
T ss_pred             cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcC-----------------CCceeecCHHHHHHHHhc-CCcEEEEEEC
Confidence            9999998776324678999999999999999875                 3344554 5677777754 5666777765


Q ss_pred             CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCc--CHHHHHHHHH
Q 021368          188 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDR--TVVALYKFLK  265 (313)
Q Consensus       188 ~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~--~~~~l~~fi~  265 (313)
                      . ..  ......+.++|..+...  ..+.....+......++. ..|.+.+|...........|.|..  +.+.|..||+
T Consensus       139 ~-~~--~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~  212 (462)
T TIGR01130       139 D-LD--SELNDTFLSVAEKLRDV--YFFFAHSSDVAAFAKLGA-FPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIR  212 (462)
T ss_pred             C-CC--cHHHHHHHHHHHHhhhc--cceEEecCCHHHHhhcCC-CCCcEEEecccccccccccccCcccCCHHHHHHHHH
Confidence            4 22  46778899999988773  332222222222244444 346666665443321223577754  5689999999


Q ss_pred             hcCCCCccccCCC
Q 021368          266 KNASIPFKIQKPT  278 (313)
Q Consensus       266 ~~~~~~~~~~~~~  278 (313)
                      .+.-+.+....+.
T Consensus       213 ~~~~p~v~~~~~~  225 (462)
T TIGR01130       213 AESLPLVGEFTQE  225 (462)
T ss_pred             HcCCCceEeeCCc
Confidence            9987666655444

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.71  E-value=4.8e-17  Score=120.05  Aligned_cols=100  Identities=14%  Similarity=0.184  Sum_probs=90.4

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      |.+.+|+.++|+..+..+..++|.||++| ++|+.+.|.|.++|.++++.+.|+.|||++   ++.+|++++|.++  |+
T Consensus         1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt   75 (101)
T cd03003           1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSY--PS   75 (101)
T ss_pred             CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCcc--CE
Confidence            45789999999998888888999999999 999999999999999999999999999998   6699999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +++|..|. ....|.|.++.+.|.+|+
T Consensus        76 ~~~~~~g~-~~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          76 LYVFPSGM-NPEKYYGDRSKESLVKFA  101 (101)
T ss_pred             EEEEcCCC-CcccCCCCCCHHHHHhhC
Confidence            99998775 356789999999998874

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.71  E-value=9.2e-17  Score=117.39  Aligned_cols=92  Identities=21%  Similarity=0.417  Sum_probs=81.6

Q ss_pred             cChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCC
Q 021368          168 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       168 ~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~  244 (313)
                      ++|++.+.+. +++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|++++|++|+.
T Consensus         1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~   78 (96)
T cd02956           1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP   78 (96)
T ss_pred             CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence            3677778655 68999999999999999999999999999976  58999999999876  7899999999999998877


Q ss_pred             CcCceeeccCcCHHHHHHHH
Q 021368          245 SFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       245 ~~~~~~y~g~~~~~~l~~fi  264 (313)
                      +.   .+.|..+.+.|..||
T Consensus        79 ~~---~~~g~~~~~~l~~~l   95 (96)
T cd02956          79 VD---GFQGAQPEEQLRQML   95 (96)
T ss_pred             ee---eecCCCCHHHHHHHh
Confidence            54   799999999999987

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.70  E-value=7.3e-17  Score=134.54  Aligned_cols=106  Identities=27%  Similarity=0.583  Sum_probs=92.7

Q ss_pred             CCCeEEEcCcChHHHhhcC----CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc
Q 021368          159 DGDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  232 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~----~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~  232 (313)
                      ...|..++.++|++.+...    +++++|+||++||++|+.+.|.|.++++.+++  .+.++.+|++.+..  ++|+|.+
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~  106 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG  106 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence            3568999999999988543    57999999999999999999999999999986  68999999998866  7899999


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++++|++|..+.   .+.|..+.+.|.+|+.++..
T Consensus       107 ~PTl~~f~~G~~v~---~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        107 YPTLLLFDKGKMYQ---YEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             CCEEEEEECCEEEE---eeCCCCCHHHHHHHHHHHHH
Confidence            99999999887652   45577899999999999863

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.70  E-value=1.2e-16  Score=117.95  Aligned_cols=100  Identities=48%  Similarity=0.953  Sum_probs=88.5

Q ss_pred             EcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCC
Q 021368          165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  242 (313)
Q Consensus       165 l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g  242 (313)
                      |++++|++.+. .+++++|+||++||+.|+.+.+.|..++..+.+...+.++.+|++.+..  .++++.++|++++|++|
T Consensus         1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            45688999885 7889999999999999999999999999999875569999999998866  78999999999999988


Q ss_pred             CCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          243 NKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       243 ~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ..   +..|.|..+.+.|..||.+++
T Consensus        80 ~~---~~~~~g~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        80 KK---PVDYEGGRDLEAIVEFVNEKS  102 (102)
T ss_pred             Cc---ceeecCCCCHHHHHHHHHhcC
Confidence            75   348999999999999998864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.69  E-value=1.3e-16  Score=119.12  Aligned_cols=101  Identities=12%  Similarity=0.039  Sum_probs=89.4

Q ss_pred             CCceEEeCCCccccc---ccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchh-hhhCCCC
Q 021368           31 LPLVTIFTRENAPSV---FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS-EYFGITG  105 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~---~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~-~~~~v~~  105 (313)
                      .+.|.+|++.+|++.   ......++|.||++| ++|+.+.|.|+++|+++++.+.|+.|||+.   +..+| ++|+|.+
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~---~~~l~~~~~~I~~   84 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW---PQGKCRKQKHFFY   84 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---ChHHHHHhcCCcc
Confidence            466899999999986   567778889999999 999999999999999999999999999998   55899 5899999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +  |++.+|.+|. ....|.|.++.+.|..|+
T Consensus        85 ~--PTl~lf~~g~-~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          85 F--PVIHLYYRSR-GPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             c--CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence            9  9999998765 457789999999998873

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PHA02278 thioredoxin-like protein

Probab=99.69  E-value=1e-16  Score=117.75  Aligned_cols=90  Identities=13%  Similarity=0.218  Sum_probs=76.6

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----c--ccCCCCcCceEEEEeC
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----H--HRAKSDGFPTILFFPA  241 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~--~~~~v~~~P~i~~~~~  241 (313)
                      ++|.+.+ ..+++++|+|||+||++|+.+.|.+.+++..+..  .+.|+.+|++.+.    .  .+++|.++||+++|++
T Consensus         5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~   81 (103)
T PHA02278          5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD   81 (103)
T ss_pred             HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence            5677777 5789999999999999999999999999987543  4678999998752    2  7899999999999999


Q ss_pred             CCCCcCceeeccCcCHHHHHHH
Q 021368          242 GNKSFDPINVDVDRTVVALYKF  263 (313)
Q Consensus       242 g~~~~~~~~y~g~~~~~~l~~f  263 (313)
                      |..+.   ++.|..+.+.|.+|
T Consensus        82 G~~v~---~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 GQLVK---KYEDQVTPMQLQEL  100 (103)
T ss_pred             CEEEE---EEeCCCCHHHHHhh
Confidence            98875   88898888887765

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.6e-16  Score=142.56  Aligned_cols=228  Identities=23%  Similarity=0.373  Sum_probs=171.3

Q ss_pred             CcccccCCCCCCHHHHHHHHHhcCCC-------c-eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHh
Q 021368            7 EKISYFADGKFDKSTIADFVFSNKLP-------L-VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKS   76 (313)
Q Consensus         7 ~~~~~y~~g~~~~~~l~~fi~~~~~~-------~-v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~   76 (313)
                      ...+.| +|..+...+..|+.....+       . +..++..+|.... .....++|.||+|| ++|+.+.|.|++++..
T Consensus       112 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~  190 (383)
T KOG0191|consen  112 KKPIDY-SGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKL  190 (383)
T ss_pred             Cceeec-cCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHH
Confidence            578999 9999999999999877655       3 5666666766533 34556899999999 9999999999999999


Q ss_pred             cc--CeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 021368           77 FK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPI  154 (313)
Q Consensus        77 ~~--~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~  154 (313)
                      ++  +.+.++.+||+.   +..+|+.++|+++  |++.+|..+....+.+.|.++.+.|..|+.+........    ..+
T Consensus       191 ~~~~~~v~~~~~d~~~---~~~~~~~~~v~~~--Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~----~~~  261 (383)
T KOG0191|consen  191 LKSKENVELGKIDATV---HKSLASRLEVRGY--PTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPE----PEL  261 (383)
T ss_pred             hccCcceEEEeeccch---HHHHhhhhcccCC--ceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCC----ccc
Confidence            96  579999999996   7799999999999  999999887652455689999999999999987643111    111


Q ss_pred             CCCCCC---CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHH-hcCCCcEEEEEEeCCCccc--ccC
Q 021368          155 PETNDG---DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTTNEH--HRA  228 (313)
Q Consensus       155 ~~~~~~---~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~-~~~~~~v~~~~vd~~~~~~--~~~  228 (313)
                      .+....   ....++.+++... ......+++.|+++||.+|....+.+...+.. ......+.+..++|.....  +..
T Consensus       262 ~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  340 (383)
T KOG0191|consen  262 KEIEDKDTFSPTFLDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKA  340 (383)
T ss_pred             ccccCccccccchhhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHh
Confidence            111111   0111111222221 12346789999999999999999999999988 2233468888888887665  566


Q ss_pred             CCCcCceEEEEeCCCCC
Q 021368          229 KSDGFPTILFFPAGNKS  245 (313)
Q Consensus       229 ~v~~~P~i~~~~~g~~~  245 (313)
                      .++.+|++.++..+...
T Consensus       341 ~~~~~~~~~~~~~~~~~  357 (383)
T KOG0191|consen  341 IVRGYPTIKLYNYGKNP  357 (383)
T ss_pred             hhhcCceeEeecccccc
Confidence            78899999999887754

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.68  E-value=3.4e-16  Score=116.06  Aligned_cols=99  Identities=30%  Similarity=0.622  Sum_probs=85.6

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCCcCceEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~v~~~P~i~  237 (313)
                      |..++..+|++.+. .+++++|+||++||++|+.+.+.+..++..+.....+.++.+|++.  +..  .++++.++|+++
T Consensus         2 ~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFLK-KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHHh-hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            56788899998874 5669999999999999999999999999999754468999999998  443  689999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      +|++|+...   .|.|..+.+.|.+||
T Consensus        81 ~~~~g~~~~---~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGKFVE---KYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCCeeE---EeCCCCCHHHHHhhC
Confidence            999987543   899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.67  E-value=8.8e-17  Score=119.04  Aligned_cols=82  Identities=21%  Similarity=0.227  Sum_probs=71.3

Q ss_pred             CcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368          167 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       167 ~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~  243 (313)
                      .+.|++.+.. .+++++|.|||+||++|+.|.|.+.+++..+.+  .+.|+++|++.+..  .+++|.++||+++|++|+
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~   79 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            3567777753 578999999999999999999999999999876  58999999999877  789999999999999999


Q ss_pred             CCcCceeecc
Q 021368          244 KSFDPINVDV  253 (313)
Q Consensus       244 ~~~~~~~y~g  253 (313)
                      .+.   ...|
T Consensus        80 ~v~---~~~G   86 (114)
T cd02954          80 HMK---IDLG   86 (114)
T ss_pred             EEE---EEcC
Confidence            875   4545

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.67  E-value=2.7e-16  Score=115.49  Aligned_cols=89  Identities=24%  Similarity=0.434  Sum_probs=74.7

Q ss_pred             ChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCCCCcCceEEEEeCCCC
Q 021368          169 NFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       169 ~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~v~~~P~i~~~~~g~~  244 (313)
                      ++.+++. ..+++++|.|||+||++|+.++|.|.++++.+++   +.++.+|++ .+..  .++++.++||+++|++| .
T Consensus         8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~   83 (100)
T cd02999           8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P   83 (100)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c
Confidence            3444443 4678999999999999999999999999999864   778889987 4443  78999999999999988 4


Q ss_pred             CcCceeeccCcCHHHHHHHH
Q 021368          245 SFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       245 ~~~~~~y~g~~~~~~l~~fi  264 (313)
                      .   .+|.|..+.+.|.+||
T Consensus        84 ~---~~~~G~~~~~~l~~f~  100 (100)
T cd02999          84 R---VRYNGTRTLDSLAAFY  100 (100)
T ss_pred             e---eEecCCCCHHHHHhhC
Confidence            4   3899999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK10996 thioredoxin 2; Provisional

Probab=99.67  E-value=4.7e-16  Score=121.29  Aligned_cols=104  Identities=23%  Similarity=0.557  Sum_probs=91.5

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      .+.+..++..+|++.+ +.+++++|+||++||++|+.+.+.|.+++..+..  .+.++.+|++.+..  .+++|.++|++
T Consensus        34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl  110 (139)
T PRK10996         34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI  110 (139)
T ss_pred             CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence            4556778889999876 5689999999999999999999999999998876  69999999998766  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|++|+.+.   .+.|..+.+.|.+||++++
T Consensus       111 ii~~~G~~v~---~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        111 MIFKNGQVVD---MLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEEECCEEEE---EEcCCCCHHHHHHHHHHhC
Confidence            9999888764   7889999999999998763

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.66  E-value=4.4e-16  Score=115.67  Aligned_cols=98  Identities=22%  Similarity=0.331  Sum_probs=78.8

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeC--CCCc---cchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----ccc--ccCC
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NEH--HRAK  229 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~--~~C~---~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----~~~--~~~~  229 (313)
                      +..|+..+|++.| ...+.+||.||+  |||+   +|..+.+.+...+.      .+.++.|||+.     +..  ++|+
T Consensus         3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~   75 (116)
T cd03007           3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK   75 (116)
T ss_pred             eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence            6789999999988 567889999999  8888   56555555544432      48999999953     322  7999


Q ss_pred             CC--cCceEEEEeCCCCCcCceeeccC-cCHHHHHHHHHhc
Q 021368          230 SD--GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKN  267 (313)
Q Consensus       230 v~--~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~  267 (313)
                      |+  ++||+++|++|... .++.|.|. ++.+.|++||+++
T Consensus        76 I~~~gyPTl~lF~~g~~~-~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          76 LDKESYPVIYLFHGGDFE-NPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCcCCCCEEEEEeCCCcC-CCccCCCCcccHHHHHHHHHhc
Confidence            99  99999999998533 45699996 9999999999987

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.66  E-value=3.5e-16  Score=116.10  Aligned_cols=101  Identities=22%  Similarity=0.253  Sum_probs=88.7

Q ss_pred             CceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           32 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      |.+.+++.++|++.+ ..+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.|||+.   ++.+|++++|+++  |
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~--P   75 (104)
T cd03004           1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK---YESLCQQANIRAY--P   75 (104)
T ss_pred             CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc---hHHHHHHcCCCcc--c
Confidence            457789999999875 34557888899999 999999999999999999889999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCC-HHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELT-LDKIKTFG  137 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~-~~~i~~fi  137 (313)
                      ++++|..++.....|.|..+ .++|.+|+
T Consensus        76 t~~~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          76 TIRLYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence            99999887556778999887 99998885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>TIGR01068 thioredoxin thioredoxin

Probab=99.65  E-value=1e-15  Score=112.72  Aligned_cols=98  Identities=30%  Similarity=0.562  Sum_probs=85.9

Q ss_pred             cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368          166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~  243 (313)
                      +.++|.+.+.+.+++++|+||++||+.|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|++++|++|.
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~   79 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK   79 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence            45678888876678999999999999999999999999988865  69999999998875  789999999999999887


Q ss_pred             CCcCceeeccCcCHHHHHHHHHhcC
Q 021368          244 KSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       244 ~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ...   .+.|..+.+.|..||++++
T Consensus        80 ~~~---~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        80 EVD---RSVGALPKAALKQLINKNL  101 (101)
T ss_pred             Eee---eecCCCCHHHHHHHHHhhC
Confidence            653   7788889999999998763

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.65  E-value=5.7e-16  Score=115.75  Aligned_cols=100  Identities=23%  Similarity=0.298  Sum_probs=88.6

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc------CeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK------GKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~------~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      .+.++++++|++.+.....++|.||++| ++|+.+.|.|++++..++      +.+.|+.|||+.   ++.+|++|||++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~v~~   78 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK---ESDIADRYRINK   78 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHhCCCCc
Confidence            4778999999999888888888999999 999999999999998764      259999999999   569999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +  |++.+|.+|......|.|.++.++|.+||
T Consensus        79 ~--Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          79 Y--PTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             C--CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9  99999988764557889999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.64  E-value=6.3e-16  Score=114.26  Aligned_cols=101  Identities=19%  Similarity=0.322  Sum_probs=91.3

Q ss_pred             eEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      |..+|.++|++.+.. ...++|+||++| ++|+.+.|.|.+++..+.+.+.|+.|||++   ++.+|++|+|.++  |++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~   75 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE---NKELCKKYGVKSV--PTI   75 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---SHHHHHHTTCSSS--SEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc---cchhhhccCCCCC--CEE
Confidence            568999999998876 778889999999 999999999999999999889999999998   6799999999999  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +++.+|... ..+.|.++.++|.+||+++
T Consensus        76 ~~~~~g~~~-~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   76 IFFKNGKEV-KRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             EEEETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred             EEEECCcEE-EEEECCCCHHHHHHHHHcC
Confidence            999888643 3789999999999999874

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.64  E-value=1.1e-15  Score=112.79  Aligned_cols=96  Identities=20%  Similarity=0.413  Sum_probs=80.0

Q ss_pred             EcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEeCCC
Q 021368          165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       165 l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~~g~  243 (313)
                      -+.++|.+.+ +.+++++|+||++||++|+.+.+.+..++..+.+. .+.|+.+|++.... .+|++.++|++++|++|.
T Consensus         5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~   82 (102)
T cd02948           5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE   82 (102)
T ss_pred             cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence            3567788866 57889999999999999999999999999998742 47899999883333 799999999999999998


Q ss_pred             CCcCceeeccCcCHHHHHHHHHh
Q 021368          244 KSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       244 ~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      .+.   +..| .+...|.++|.+
T Consensus        83 ~~~---~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          83 LVA---VIRG-ANAPLLNKTITE  101 (102)
T ss_pred             EEE---EEec-CChHHHHHHHhh
Confidence            764   6667 477889888865

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.64  E-value=1.6e-15  Score=138.68  Aligned_cols=106  Identities=30%  Similarity=0.603  Sum_probs=92.1

Q ss_pred             CCCeEEEcCcChHHHhh--cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCc
Q 021368          159 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDG  232 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~--~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~  232 (313)
                      ...|..|+.++|++.+.  +.+++++|.||++||++|+.+.|.|.+++..+++. .+.|+.+|++.+..    ++++|.+
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence            35788999999999884  56789999999999999999999999999999764 48899999987642    5799999


Q ss_pred             CceEEEEeCCCCCcCceeec-cCcCHHHHHHHHHhc
Q 021368          233 FPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKN  267 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~-g~~~~~~l~~fi~~~  267 (313)
                      +||+++|++|..  .++.|. |.++.+.|+.||+..
T Consensus       429 ~PTii~Fk~g~~--~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       429 FPTILFFPKHSS--RPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             cceEEEEECCCC--CceeCCCCCCCHHHHHHHHHhh
Confidence            999999999975  567898 489999999999864

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.64  E-value=2.1e-15  Score=113.48  Aligned_cols=100  Identities=34%  Similarity=0.649  Sum_probs=82.4

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc----ccCCCCcCce
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----HRAKSDGFPT  235 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~----~~~~v~~~P~  235 (313)
                      .+..++.++|++.+.+.+++++|+||++||++|+.+.+.|.+++..++.. +.+.++.+||+....    .++++.++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            57889999999999877889999999999999999999999999998754 358999999875332    6899999999


Q ss_pred             EEEEeCCCCC-cCceeeccC-cCHHHH
Q 021368          236 ILFFPAGNKS-FDPINVDVD-RTVVAL  260 (313)
Q Consensus       236 i~~~~~g~~~-~~~~~y~g~-~~~~~l  260 (313)
                      +++|++|... .....|+|. +..+++
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHH
Confidence            9999888753 133567775 555555

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.64  E-value=1.2e-15  Score=112.76  Aligned_cols=94  Identities=22%  Similarity=0.270  Sum_probs=77.8

Q ss_pred             CcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEe
Q 021368          167 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFP  240 (313)
Q Consensus       167 ~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~  240 (313)
                      .++|++.+.+. +++++|.||++||++|+.+.|.+.+++..+ .  .+.|+.+|++.+..     .+++|.++||+++|+
T Consensus         3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~   79 (103)
T cd02985           3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK   79 (103)
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence            45777877644 789999999999999999999999999998 3  58999999988741     689999999999999


Q ss_pred             CCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          241 AGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       241 ~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      +|+.+.   .+.| .....|.+-+..+
T Consensus        80 ~G~~v~---~~~G-~~~~~l~~~~~~~  102 (103)
T cd02985          80 DGEKIH---EEEG-IGPDELIGDVLYY  102 (103)
T ss_pred             CCeEEE---EEeC-CCHHHHHHHHHhc
Confidence            998764   7888 4566777766543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.63  E-value=1.7e-15  Score=138.40  Aligned_cols=106  Identities=29%  Similarity=0.610  Sum_probs=92.2

Q ss_pred             CCCeEEEcCcChHHHhh--cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc---ccCCCCc
Q 021368          159 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH---HRAKSDG  232 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~--~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~---~~~~v~~  232 (313)
                      ...|..++.++|++++.  +.+++++|+||++||++|+.|.+.|.+++..+.+. .+.|+.+|++ .+..   +.++|.+
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence            35788999999999874  56889999999999999999999999999999764 6999999999 4333   3699999


Q ss_pred             CceEEEEeCCCCCcCceeecc-CcCHHHHHHHHHhc
Q 021368          233 FPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKN  267 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~  267 (313)
                      +||+++|++|..  .++.|.| .++.+.|+.||++.
T Consensus       423 ~PTil~f~~g~~--~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 FPTILLFPKNSS--RPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeEEEEEeCCCC--CeeecCCCCcCHHHHHHHHHHh
Confidence            999999999876  5778986 79999999999874

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.62  E-value=1.6e-15  Score=112.73  Aligned_cols=104  Identities=14%  Similarity=0.101  Sum_probs=83.9

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccC---eEEEEEEeCCCccc--ccchhhhhCCC--CC
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDV--GKPVSEYFGIT--GE  106 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~--~~~l~~~~~v~--~~  106 (313)
                      +..|++.+|++++.+...++|.||++|+.|.+ .|++++||.++..   .|.++.|||+++..  +.+||++|||+  +|
T Consensus         3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy   81 (116)
T cd03007           3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY   81 (116)
T ss_pred             eeECChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence            67899999999999998999999996655555 3667777766632   49999999964221  57899999999  88


Q ss_pred             CCcEEEEEcCCC-CceeccCCC-CCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDD-AKKHILDGE-LTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~-~~~~~~~g~-~~~~~i~~fi~~~  140 (313)
                        |||.+|.+|. ..+..|.|. ++.+.|.+|+.+.
T Consensus        82 --PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          82 --PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             --CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence              9999999874 346789996 9999999999864

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.61  E-value=2.6e-15  Score=112.94  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=90.3

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC--Cc--hh--hhhHHHHHHHHhc--cCeEEEEEEeCCCcccccchhhhhC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS--ND--SE--KLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFG  102 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~--~~--c~--~~~~~~~~~a~~~--~~~v~f~~vd~~~~~~~~~l~~~~~  102 (313)
                      ...|..||.++|++.+......+|+||.+|  ++  |+  .+.|.+.++|.++  .+.+.|+.||+++   +++++++||
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~---~~~La~~~~   84 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK---DAKVAKKLG   84 (120)
T ss_pred             CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC---CHHHHHHcC
Confidence            346888999999998887777777777776  54  99  8899999999998  7789999999999   679999999


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      |+++  ||+++|.+|.  ...|.|.++.+.|.+|+.+++
T Consensus        85 I~~i--PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          85 LDEE--DSIYVFKDDE--VIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             Cccc--cEEEEEECCE--EEEeeCCCCHHHHHHHHHHHh
Confidence            9999  9999999886  345899999999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.61  E-value=1e-14  Score=114.05  Aligned_cols=98  Identities=21%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----cccCCCCcCceEEEEe-CC
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----HHRAKSDGFPTILFFP-AG  242 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~P~i~~~~-~g  242 (313)
                      ..|++.+ ..+++++|+||++||++|+.+.+.+.+++..+.+  .+.|+.+|++...    ...|+|.++|++++|. +|
T Consensus        11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G   87 (142)
T cd02950          11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG   87 (142)
T ss_pred             CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence            4566654 5789999999999999999999999999999876  4677777776543    2689999999999995 67


Q ss_pred             CCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          243 NKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       243 ~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      ..+.   .+.|....+.|.++|.+.+...
T Consensus        88 ~~v~---~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          88 NEEG---QSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             CEEE---EEeCCCCHHHHHHHHHHHHcCC
Confidence            7654   7889888899999999987533

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.61  E-value=3.2e-15  Score=112.54  Aligned_cols=99  Identities=24%  Similarity=0.351  Sum_probs=81.7

Q ss_pred             CCeEEEcCcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceE
Q 021368          160 GDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i  236 (313)
                      +.|..++.++|.+.+.+.+  ++++|+||++||++|+.+.+.+.+++..+.   ++.|+++|++.+.. .++++.++|++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~~l~~~~~i~~~Pt~   80 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKAFLVNYLDIKVLPTL   80 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhhHHHHhcCCCcCCEE
Confidence            5678899999999987653  899999999999999999999999999985   47899999998622 78999999999


Q ss_pred             EEEeCCCCCcCceeecc-------CcCHHHHHHHH
Q 021368          237 LFFPAGNKSFDPINVDV-------DRTVVALYKFL  264 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g-------~~~~~~l~~fi  264 (313)
                      ++|++|+.+.   ++.|       ..+.+.|.+|+
T Consensus        81 ~~f~~G~~v~---~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          81 LVYKNGELID---NIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             EEEECCEEEE---EEecHHHhCCCCCCHHHHHHHh
Confidence            9999998875   5554       23455555554

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.61  E-value=3.5e-15  Score=117.13  Aligned_cols=91  Identities=18%  Similarity=0.384  Sum_probs=78.0

Q ss_pred             CCCeEEEcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc---
Q 021368          159 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG---  232 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~---  232 (313)
                      ...+..++.++|++.+.. .+++++|+||++||++|+.+.|.|.+++..+.+. ++.|+.+|++.+..  .+++|.+   
T Consensus        27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~~~V~~~~~  105 (152)
T cd02962          27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEKFRVSTSPL  105 (152)
T ss_pred             CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHHcCceecCC
Confidence            367889999999998854 3578999999999999999999999999998653 59999999998876  6788887   


Q ss_pred             ---CceEEEEeCCCCCcCceeecc
Q 021368          233 ---FPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       233 ---~P~i~~~~~g~~~~~~~~y~g  253 (313)
                         +||+++|++|+.+.   ++.|
T Consensus       106 v~~~PT~ilf~~Gk~v~---r~~G  126 (152)
T cd02962         106 SKQLPTIILFQGGKEVA---RRPY  126 (152)
T ss_pred             cCCCCEEEEEECCEEEE---EEec
Confidence               99999999998875   4554

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.61  E-value=5.8e-15  Score=109.49  Aligned_cols=94  Identities=27%  Similarity=0.599  Sum_probs=79.3

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCC
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~  244 (313)
                      ++|++.  ..++.++|.||++||++|+.+.|.|.+++..++.. ..+.++.+|++.+..  +++++.++|++++|.+|..
T Consensus         7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~   84 (104)
T cd03000           7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA   84 (104)
T ss_pred             hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence            567763  34679999999999999999999999999998653 259999999987665  7899999999999976533


Q ss_pred             CcCceeeccCcCHHHHHHHHHhc
Q 021368          245 SFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       245 ~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                          ..|.|..+.+.|.+|+++.
T Consensus        85 ----~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          85 ----YNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             ----eeecCCCCHHHHHHHHHhh
Confidence                3789999999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.60  E-value=9.7e-15  Score=107.37  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=83.3

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCC--CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~--C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      .-.++..+|++.+ ..+.+++|+||++|  |++|..+.|.|.+++.++.+  .+.|+.+|++.+..  .+|+|.++||++
T Consensus        12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            4468999999877 67789999999997  99999999999999999976  68999999999876  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHH
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALY  261 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~  261 (313)
                      +|++|+.+.   .+.|..+.+++.
T Consensus        89 ~fkdGk~v~---~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDGRYVG---VLAGIRDWDEYV  109 (111)
T ss_pred             EEECCEEEE---EEeCccCHHHHh
Confidence            999998875   788887777664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.59  E-value=5.2e-15  Score=110.69  Aligned_cols=102  Identities=22%  Similarity=0.279  Sum_probs=89.1

Q ss_pred             eEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      |.+|+..+|+..+.. +.+++|.||++| ++|+.+.|.|.+++..+.+.+.|+.+||+... ++.+|++|+|.++  |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~--Pt~   78 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGF--PTL   78 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcC--CEE
Confidence            678999999987654 444788899999 99999999999999999988999999999855 6689999999999  999


Q ss_pred             EEEcCCC----CceeccCCCCCHHHHHHHHH
Q 021368          112 AYTGNDD----AKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       112 ~~~~~~~----~~~~~~~g~~~~~~i~~fi~  138 (313)
                      +++..++    .....|.|.++.++|.+||.
T Consensus        79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence            9998875    24677899999999999973

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.59  E-value=2.6e-14  Score=119.84  Aligned_cols=212  Identities=20%  Similarity=0.211  Sum_probs=146.5

Q ss_pred             eCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc-----CeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           37 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-----GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        37 lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-----~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      ++.+|++.+......++|-||++| ...+.+.|+|.++|.+++     +++.++.|||+.++   .++++|.|.-|  ||
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~---~ia~ky~I~Ky--PT   75 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED---DIADKYHINKY--PT   75 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh---HHhhhhccccC--ce
Confidence            466788888888777888899999 899999999999998776     57999999999955   99999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcC-cChHHHhhcCCCcEEEEEeCCC
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDESKDVLLEIYAPW  189 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~-~~f~~~l~~~~k~~lv~fy~~~  189 (313)
                      +.+|++|......|.|.++.+.+.+||++.++..+                 .+... +.+..+....+..++.+|-...
T Consensus        76 lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i-----------------~Ef~sl~~l~n~~~p~K~~vIgyF~~kd  138 (375)
T KOG0912|consen   76 LKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI-----------------NEFESLDQLQNLDIPSKRTVIGYFPSKD  138 (375)
T ss_pred             eeeeeccchhhhhhccchhHHHHHHHHHHHhccHH-----------------HHHHhHHHHHhhhccccceEEEEeccCC
Confidence            99999998777789999999999999999987332                 22222 2333332223445566665444


Q ss_pred             CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC-cCHHHHHHHHHhcC
Q 021368          190 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKNA  268 (313)
Q Consensus       190 C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~~  268 (313)
                      .+.    ...+.++|..+++.-.+.++.-|....    ....+.+ +++|+.+..... -.|.|. .+.+.+..||.+-+
T Consensus       139 spe----y~~~~kva~~lr~dc~f~V~~gD~~~~----~~~~~~~-~~~f~pd~~~~~-~~f~G~~~nf~el~~Wi~dKc  208 (375)
T KOG0912|consen  139 SPE----YDNLRKVASLLRDDCVFLVGFGDLLKP----HEPPGKN-ILVFDPDHSEPN-HEFLGSMTNFDELKQWIQDKC  208 (375)
T ss_pred             Cch----HHHHHHHHHHHhhccEEEeeccccccC----CCCCCCc-eEEeCCCcCCcC-cccccccccHHHHHHHHHhcc
Confidence            333    457788888888732233332232211    1112222 455555444311 269995 46899999999987


Q ss_pred             CCCccccCCCCC
Q 021368          269 SIPFKIQKPTSA  280 (313)
Q Consensus       269 ~~~~~~~~~~~~  280 (313)
                      -+-++=.+-.++
T Consensus       209 vpLVREiTFeN~  220 (375)
T KOG0912|consen  209 VPLVREITFENA  220 (375)
T ss_pred             hhhhhhhhhccH
Confidence            554444443333

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.59  E-value=9.4e-15  Score=119.75  Aligned_cols=135  Identities=33%  Similarity=0.527  Sum_probs=115.4

Q ss_pred             CCcccCCcccccCCCC-CCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEee-C-CchhhhhHHHHHHHHhc
Q 021368            1 MVKKETEKISYFADGK-FDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSF   77 (313)
Q Consensus         1 ~~~~~~~~~~~y~~g~-~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~   77 (313)
                      +||..|+++..| +|+ ++..+|.+||..++.|+|.++|.+++..++..+.+.+++++.. . ...+.+...+.++|.++
T Consensus        46 ~~k~~~~~~~~y-~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~  124 (184)
T PF13848_consen   46 VYKKFDEKPVVY-DGDKFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKF  124 (184)
T ss_dssp             EEECTTTSEEEE-SSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCT
T ss_pred             EeccCCCCceec-ccccCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhc
Confidence            468888999999 998 9999999999999999999999999999999887755555543 4 67899999999999999


Q ss_pred             cCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCc-eeccCCCCCHHHHHHHHHH
Q 021368           78 KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK-KHILDGELTLDKIKTFGED  139 (313)
Q Consensus        78 ~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~-~~~~~g~~~~~~i~~fi~~  139 (313)
                      ++++.|+++||+.   .+++++.+|+.....|++++++..... .+.+.+..+.++|.+|+.+
T Consensus       125 ~~~~~f~~~d~~~---~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  125 KGKINFVYVDADD---FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             TTTSEEEEEETTT---THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CCeEEEEEeehHH---hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            9999999999996   568999999997667999999855433 3445889999999999975

...

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.59  E-value=5.1e-15  Score=108.60  Aligned_cols=98  Identities=49%  Similarity=0.933  Sum_probs=83.0

Q ss_pred             EEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeC
Q 021368          164 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA  241 (313)
Q Consensus       164 ~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~  241 (313)
                      .++.++|.+.+.+ +++++|+||++||++|+.+.+.|.+++..++....+.++.+|++.+..  .++++.++|++++|++
T Consensus         2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            3677888888754 459999999999999999999999999999633479999999998554  7999999999999988


Q ss_pred             CCCCcCceeeccCcCHHHHHHHH
Q 021368          242 GNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       242 g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      +..  ...+|.|..+.+.|.+|+
T Consensus        81 ~~~--~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSK--EPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCc--ccccCCCCcCHHHHHhhC
Confidence            742  345899999999998885

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.59  E-value=6.8e-15  Score=108.84  Aligned_cols=99  Identities=19%  Similarity=0.213  Sum_probs=87.8

Q ss_pred             eEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      |.+++++++.+.+.... .++|+||++| ++|+++.|.|.+++.++.+.+.|+.+||++   +..+|++|||+++  |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~i~~~--P~~   76 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV---HQSLAQQYGVRGF--PTI   76 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc---hHHHHHHCCCCcc--CEE
Confidence            56888999988764444 4788899999 999999999999999999999999999998   6699999999988  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +++..+....+.|.|.++.++|.+|+
T Consensus        77 ~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          77 KVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             EEECCCCcceeecCCCCCHHHHHHHh
Confidence            99988766678899999999999996

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.3e-14  Score=106.69  Aligned_cols=85  Identities=29%  Similarity=0.545  Sum_probs=71.9

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g  253 (313)
                      ..++.++|+|||+||++|+.+.|.+.++|.+|.+   +.|.++|++.+..  +.+++...||+.+|++|..+.   .+.|
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG   92 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD---EVVG   92 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence            3468999999999999999999999999999875   8999999997333  789999999999999999875   7777


Q ss_pred             CcCHHHHHHHHHhc
Q 021368          254 DRTVVALYKFLKKN  267 (313)
Q Consensus       254 ~~~~~~l~~fi~~~  267 (313)
                      . +...|.+.|.++
T Consensus        93 a-~~~~l~~~i~~~  105 (106)
T KOG0907|consen   93 A-NKAELEKKIAKH  105 (106)
T ss_pred             C-CHHHHHHHHHhc
Confidence            4 444677776654

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.56  E-value=2.6e-14  Score=107.30  Aligned_cols=98  Identities=23%  Similarity=0.309  Sum_probs=80.8

Q ss_pred             CCeEEEcC-cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          160 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~-~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      +.+..++. +.|.+.+. ++++++|+||++||++|+.+.+.+.++++.+.   .+.|+++|++.+..  +++++.++|++
T Consensus         4 g~v~~i~~~~~~~~~i~-~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~   79 (113)
T cd02989           4 GKYREVSDEKEFFEIVK-SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV   79 (113)
T ss_pred             CCeEEeCCHHHHHHHHh-CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence            45677777 88888874 56899999999999999999999999999875   48999999999875  78999999999


Q ss_pred             EEEeCCCCCcCceeecc--------CcCHHHHHHHH
Q 021368          237 LFFPAGNKSFDPINVDV--------DRTVVALYKFL  264 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g--------~~~~~~l~~fi  264 (313)
                      ++|++|..+.   ++.|        ..+.+.+.+|+
T Consensus        80 l~fk~G~~v~---~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          80 ILFKNGKTVD---RIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEECCEEEE---EEECccccCCCCCCCHHHHHHHh
Confidence            9999998764   3333        34556666665

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.56  E-value=2.2e-14  Score=105.76  Aligned_cols=98  Identities=18%  Similarity=0.146  Sum_probs=86.0

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      .|.+|+.++|++++..  .++|.||++| ++|+.+.|.|.+++..+.+ .+.|+.|||++   ++.+|++|+|.++  |+
T Consensus         2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~--Pt   74 (101)
T cd02994           2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTAL--PT   74 (101)
T ss_pred             ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCccc--CE
Confidence            4788999999998754  4789999999 9999999999999998875 59999999998   5699999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      ++++.+|.  ...|.|.++.++|..|+.+
T Consensus        75 ~~~~~~g~--~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          75 IYHAKDGV--FRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             EEEeCCCC--EEEecCCCCHHHHHHHHhC
Confidence            99987764  4678999999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.4e-14  Score=110.48  Aligned_cols=105  Identities=18%  Similarity=0.280  Sum_probs=92.4

Q ss_pred             CceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           32 PLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        32 ~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      ..+..++..+|++ ++....+++|.|+++| ++|+.+.|.+++++.++.|++.|+.||.++   +.+++.+|+|...  |
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~---~~ela~~Y~I~av--P  117 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE---HPELAEDYEISAV--P  117 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc---ccchHhhcceeee--e
Confidence            3666777777777 5567778888899999 999999999999999999999999999999   6799999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++++|.+|. ..-.+.|..+.+.|..+|++++.
T Consensus       118 tvlvfknGe-~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  118 TVLVFKNGE-KVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEEEECCE-EeeeecccCCHHHHHHHHHHHhc
Confidence            999999886 34567899999999999999864

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.55  E-value=2.7e-14  Score=104.47  Aligned_cols=91  Identities=19%  Similarity=0.403  Sum_probs=79.8

Q ss_pred             hHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcC
Q 021368          170 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFD  247 (313)
Q Consensus       170 f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~  247 (313)
                      ++..+...+++++|+||++||+.|+.+.+.+.++++.+.+  ++.++.+|++....  .++++.++|++++|++|+.+. 
T Consensus         5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~-   81 (97)
T cd02949           5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK-   81 (97)
T ss_pred             HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence            4566777889999999999999999999999999999875  69999999987765  789999999999999887664 


Q ss_pred             ceeeccCcCHHHHHHHHH
Q 021368          248 PINVDVDRTVVALYKFLK  265 (313)
Q Consensus       248 ~~~y~g~~~~~~l~~fi~  265 (313)
                        .+.|..+.+.|.+||+
T Consensus        82 --~~~g~~~~~~~~~~l~   97 (97)
T cd02949          82 --EISGVKMKSEYREFIE   97 (97)
T ss_pred             --EEeCCccHHHHHHhhC
Confidence              8889888898988873

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.54  E-value=3.9e-14  Score=114.44  Aligned_cols=106  Identities=21%  Similarity=0.305  Sum_probs=87.3

Q ss_pred             CCCeEEEcC-cChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCc
Q 021368          159 DGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~~-~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P  234 (313)
                      .+.|..++. ++|.+.+...+  .+++|+||++||++|+.+.+.|..+|..+.   .+.|++||++.... ..|++.++|
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~~l~~~f~v~~vP  137 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASATGASDEFDTDALP  137 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccchhhHHhCCCCCCC
Confidence            577889999 99999986544  489999999999999999999999999875   49999999997633 789999999


Q ss_pred             eEEEEeCCCCCcCceeec---c-CcCHHHHHHHHHhc
Q 021368          235 TILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN  267 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~  267 (313)
                      |+++|++|..+.+.+.+.   | ..+.+.|..||.++
T Consensus       138 Tlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         138 ALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             EEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            999999998875333333   1 45678888888764

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.53  E-value=4.1e-14  Score=108.91  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=80.0

Q ss_pred             cCcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE-EEeC
Q 021368          166 VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL-FFPA  241 (313)
Q Consensus       166 ~~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~-~~~~  241 (313)
                      +..+|++.+. ..+++++|.||++||++|+.+.|.+.+++..+.+  .+.|+.+|++.+..  ..|+|.+.|+++ +|++
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~   87 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN   87 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence            3577888886 4478999999999999999999999999999876  58889999999876  789999776655 8899


Q ss_pred             CC-CCcCceeecc--------CcCHHHHHHHHHhcC
Q 021368          242 GN-KSFDPINVDV--------DRTVVALYKFLKKNA  268 (313)
Q Consensus       242 g~-~~~~~~~y~g--------~~~~~~l~~fi~~~~  268 (313)
                      |. .+.   +..|        ..+.+.|+.-+....
T Consensus        88 g~~~vd---~~tG~~~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410         88 KHIMID---LGTGNNNKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             CeEEEE---EecccccccccccCCHHHHHHHHHHHH
Confidence            98 554   6666        456777777776653

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.53  E-value=2.7e-14  Score=105.43  Aligned_cols=97  Identities=22%  Similarity=0.311  Sum_probs=85.6

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.++++++|+..+..+ .++|.||++| ++|+.+.|.|.+++.++.+   .+.|+.|||+.   +..+|++|+|.++  |
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P   75 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGY--P   75 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcC--C
Confidence            6788999999988766 5888899999 9999999999999999987   79999999998   5699999999988  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +++++..|. ....+.|.++.+.|.+||
T Consensus        76 t~~~~~~g~-~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          76 TLLLFKDGE-KVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence            999997765 456789999999998875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.53  E-value=3.1e-14  Score=106.43  Aligned_cols=101  Identities=13%  Similarity=0.189  Sum_probs=86.5

Q ss_pred             ceEEeCCCccccccc---CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhh-hhCCCCC
Q 021368           33 LVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSE-YFGITGE  106 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~---~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~-~~~v~~~  106 (313)
                      .|.+++.++|+.++.   .+.+++|.||++| ++|+++.|.|.+++..+.+. +.|+.|||+..  ...+|+ .++|+++
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~~   79 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKSF   79 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCcC
Confidence            478899999998873   4568899999999 99999999999999999974 99999999873  247786 5999999


Q ss_pred             CCcEEEEEcCCCCceeccCCC-CCHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGE-LTLDKIKTFG  137 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi  137 (313)
                        |++++|..+....+.|.|. ++.++|..|+
T Consensus        80 --Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          80 --PTILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             --CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence              9999998876667889985 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=6e-14  Score=127.31  Aligned_cols=236  Identities=15%  Similarity=0.130  Sum_probs=154.7

Q ss_pred             CCceEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      .+.|.+|+.++|+..+-.+. .++|.||++| |+|++++|.|+++|..+..   .+.++.|||.++. |..+|+.|+|+.
T Consensus        38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~  116 (606)
T KOG1731|consen   38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSG  116 (606)
T ss_pred             CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCC
Confidence            36889999999999665444 7888999999 9999999999999998875   7999999999988 999999999999


Q ss_pred             CCCcEEEEEcCCCCc---eeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-CCCeEEE-cCcChHHHhhcCCCc
Q 021368          106 EAPKVLAYTGNDDAK---KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN-DGDVKIV-VGNNFDEIVLDESKD  180 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~---~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~-~~~v~~l-~~~~f~~~l~~~~k~  180 (313)
                      |  |++.||..+..+   .-.+.|.....+|..++.+.+....   .+ +.-|.++ -.++..- +-..+++.+.+....
T Consensus       117 ~--Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~---~~-~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~y  190 (606)
T KOG1731|consen  117 Y--PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED---AQ-NRYPSWPNFDPLKDTTTLEELDEGISTTANY  190 (606)
T ss_pred             C--ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH---hh-hcCCCCCCCCCCCCcchHHHHhcccccccce
Confidence            9  999999876432   2234566777888888776654211   11 1222222 1122111 112222222222334


Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEE-EeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCcCHHH
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK-MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA  259 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~-vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~  259 (313)
                      +.|.|-...      ..-.+..+-..+... .+.+.. .|......-.+++...|..++|++|....   .+....+.+.
T Consensus       191 vAiv~e~~~------s~lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q~---l~~~~~s~~~  260 (606)
T KOG1731|consen  191 VAIVFETEP------SDLGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQP---LWPSSSSRSA  260 (606)
T ss_pred             eEEEEecCC------cccHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCcccc---cccccccHHH
Confidence            555552221      111334444444332 233333 34444444458999999999999998753   3444456667


Q ss_pred             HHHHHHhcCCCCccccCCCCCCCC
Q 021368          260 LYKFLKKNASIPFKIQKPTSAPKT  283 (313)
Q Consensus       260 l~~fi~~~~~~~~~~~~~~~~~~~  283 (313)
                      ..+-|.+.++.+.....|+-.+.+
T Consensus       261 y~~~I~~~lg~~~~a~~pt~~p~~  284 (606)
T KOG1731|consen  261 YVKKIDDLLGDKNEASGPTLHPIT  284 (606)
T ss_pred             HHHHHHHHhcCccccCCCCcCccc
Confidence            888888888877777777666655

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.52  E-value=4.4e-14  Score=104.14  Aligned_cols=98  Identities=20%  Similarity=0.317  Sum_probs=87.9

Q ss_pred             eCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368           37 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        37 lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~  113 (313)
                      |++++|+..+..+..++|+||++| +.|+.+.+.|.+++..+++  .+.|+.+||+.   ++.+|++|+|.++  |++++
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~i~~~--P~~~~   75 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRFGVSGF--PTIKF   75 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhCCCCcC--CEEEE
Confidence            467788888777778899999999 9999999999999999997  69999999998   6699999999988  99999


Q ss_pred             EcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          114 TGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       114 ~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +..++. .+.|.|..+.+.|..|++++
T Consensus        76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        76 FPKGKK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence            988765 77899999999999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.52  E-value=4.6e-14  Score=103.18  Aligned_cols=92  Identities=23%  Similarity=0.433  Sum_probs=75.6

Q ss_pred             CcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368          167 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       167 ~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~  243 (313)
                      .++|++.+... +++++|+||++||++|+.+.+.+.+++..+..  .+.++.+|++....  .++++.++|++++|++|+
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~   79 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT   79 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence            35677777544 58999999999999999999999999999733  79999999987765  789999999999999887


Q ss_pred             CCcCceeeccCcCHHHHHHHH
Q 021368          244 KSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       244 ~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      .+.   .+.| .+.+.|.+.|
T Consensus        80 ~~~---~~~g-~~~~~l~~~~   96 (97)
T cd02984          80 IVD---RVSG-ADPKELAKKV   96 (97)
T ss_pred             EEE---EEeC-CCHHHHHHhh
Confidence            653   5666 4567677655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.50  E-value=1.1e-13  Score=102.63  Aligned_cols=91  Identities=22%  Similarity=0.369  Sum_probs=75.0

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEE
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF  238 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~  238 (313)
                      +.|.+.+ ..+++++|+||++||++|+.+.+.+   .+++..+.+  ++.++.+|++.+..      .++++.++|++++
T Consensus         2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            3566655 5679999999999999999999888   678888875  69999999986432      5899999999999


Q ss_pred             EeC--CCCCcCceeeccCcCHHHHHHHH
Q 021368          239 FPA--GNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       239 ~~~--g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      |..  |...   .++.|..+.+.|.++|
T Consensus        79 ~~~~~g~~~---~~~~G~~~~~~l~~~l  103 (104)
T cd02953          79 YGPGGEPEP---LRLPGFLTADEFLEAL  103 (104)
T ss_pred             ECCCCCCCC---cccccccCHHHHHHHh
Confidence            984  5543   4889999999998887

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.49  E-value=1.3e-13  Score=112.93  Aligned_cols=105  Identities=19%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             CCCeEEEcCcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i  236 (313)
                      .+.|..++..+|...+...+  .+++|.||++||++|+.+.+.|..+|.++.   .+.|+++|++.. ...|++.++||+
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~-~~~~~i~~lPTl  156 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC-IPNYPDKNLPTI  156 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HhhCCCCCCCEE
Confidence            57899999999998876554  489999999999999999999999999985   489999998754 478999999999


Q ss_pred             EEEeCCCCCcCceeec---c-CcCHHHHHHHHHhc
Q 021368          237 LFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN  267 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~  267 (313)
                      ++|++|..+.+.+.+.   | ..+.+.|..+|.+.
T Consensus       157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~  191 (192)
T cd02988         157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV  191 (192)
T ss_pred             EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence            9999999875322222   2 45677888777653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.49  E-value=1.8e-13  Score=101.41  Aligned_cols=100  Identities=19%  Similarity=0.311  Sum_probs=86.6

Q ss_pred             eEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           34 VTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.++++++++..+.... .++++||++| ++|+++.|.|.+++..+.  +.+.|+.+||+..  +..+|++++|.++  |
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~--P   77 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGF--P   77 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCc--C
Confidence            56888999998776555 6788899999 999999999999999997  4699999999982  3499999999998  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +++++..++...+.|.|.++.+.|.+|+
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence            9999987765677889999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.48  E-value=9.3e-14  Score=102.07  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             cChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCC
Q 021368          168 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       168 ~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~  244 (313)
                      +.+++.+.+. +++++|.|+++||++|+.+.|.+.++|.++++  .+.|+.+|++....  +.|++...|++++|++|++
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh   80 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH   80 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence            4566767544 79999999999999999999999999999965  49999999999877  7899999999999999887


Q ss_pred             C
Q 021368          245 S  245 (313)
Q Consensus       245 ~  245 (313)
                      +
T Consensus        81 ~   81 (114)
T cd02986          81 M   81 (114)
T ss_pred             E
Confidence            5

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.48  E-value=2.7e-12  Score=105.11  Aligned_cols=172  Identities=22%  Similarity=0.301  Sum_probs=138.4

Q ss_pred             hhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhcC
Q 021368           65 KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEG  143 (313)
Q Consensus        65 ~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~  143 (313)
                      .....|.++|..+.+.+.|+.+.-      ..+++.+|+.   .|++++++.+...+..|.|. .+.+.|.+||....- 
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~~~~---~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~-   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTFN------EELAKKYGIK---EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF-   76 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCS---SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEcH------HHHHHHhCCC---CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-
Confidence            567889999999998899999882      3789999995   38888898866667888997 899999999999754 


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          144 KLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       144 ~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                                      +.|..++..++..+.. .+.+ ++++|+.........+...+..+|..+++  .+.|+.+|+..
T Consensus        77 ----------------P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~  137 (184)
T PF13848_consen   77 ----------------PLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADD  137 (184)
T ss_dssp             ----------------TSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTT
T ss_pred             ----------------ccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHH
Confidence                            5688999999999774 4544 88888877777888999999999999987  69999999996


Q ss_pred             ccc--ccCCCC--cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          223 NEH--HRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       223 ~~~--~~~~v~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      ...  ..+++.  .+|+++++...... ....+.|..+.+.|.+|+++
T Consensus       138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  138 FPRLLKYFGIDEDDLPALVIFDSNKGK-YYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             THHHHHHTTTTTSSSSEEEEEETTTSE-EEE--SSCGCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCCccCCEEEEEECCCCc-EEcCCCCCCCHHHHHHHhcC
Confidence            554  677777  89999999744332 12234789999999999974

...

>PRK09381 trxA thioredoxin; Provisional

Probab=99.48  E-value=3.1e-13  Score=101.02  Aligned_cols=105  Identities=19%  Similarity=0.279  Sum_probs=90.4

Q ss_pred             CCceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           31 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        31 ~~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .+.+.++++++|.+ +...+.+++|.||++| ++|+.+.|.|++++.++.+.+.|+.+||+.   ++.++++|+|..+  
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--   76 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--   76 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcC--
Confidence            45678899999886 4555667888999999 999999999999999999889999999998   5689999999988  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      |+++++..|. ....+.|..+.+.|..|+...+
T Consensus        77 Pt~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         77 PTLLLFKNGE-VAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             CEEEEEeCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence            9999997664 4456788899999999998865

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.48  E-value=1.3e-13  Score=115.13  Aligned_cols=106  Identities=15%  Similarity=0.228  Sum_probs=91.5

Q ss_pred             CCceEEeCCCcccccccC-----CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368           31 LPLVTIFTRENAPSVFES-----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~-----~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      .+.+.+|++++|++.+..     ..+++|.||++| ++|+.+.|.|++++.++++.+.|+.+||+.   ++.+|++|+|+
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~---~~~l~~~~~I~  105 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR---ALNLAKRFAIK  105 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc---cHHHHHHcCCC
Confidence            356899999999987643     357899999999 999999999999999999999999999998   66999999999


Q ss_pred             CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++  |++++|..|... ..+.|.++.++|.+|+.+.+.
T Consensus       106 ~~--PTl~~f~~G~~v-~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        106 GY--PTLLLFDKGKMY-QYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             cC--CEEEEEECCEEE-EeeCCCCCHHHHHHHHHHHHH
Confidence            99  999999876522 224678999999999998864

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.48  E-value=2.4e-13  Score=102.07  Aligned_cols=90  Identities=12%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g  253 (313)
                      .++..++|+||++||++|+.+.+.+.+++..+ .  .+.+..+|.+.+..  ..|++.++|++++|++|... ..++|.|
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~~G   95 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRYYG   95 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEEEe
Confidence            34667899999999999999999999999876 3  58899999998766  78999999999999987665 3457999


Q ss_pred             CcCHHHHHHHHHhcCC
Q 021368          254 DRTVVALYKFLKKNAS  269 (313)
Q Consensus       254 ~~~~~~l~~fi~~~~~  269 (313)
                      ....++|.+||...+.
T Consensus        96 ~~~~~el~~~i~~i~~  111 (113)
T cd02975          96 LPAGYEFASLIEDIVR  111 (113)
T ss_pred             cCchHHHHHHHHHHHh
Confidence            8888999999987653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.47  E-value=2.5e-13  Score=100.52  Aligned_cols=98  Identities=19%  Similarity=0.313  Sum_probs=84.8

Q ss_pred             eEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           34 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        34 v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      |..|+..+|++.+.. +..++|.||++| ++|+.+.|.|.++++.+.+  .+.|+.+||+.   + .++..+++.++  |
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~-~~~~~~~~~~~--P   75 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA---N-DVPSEFVVDGF--P   75 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc---h-hhhhhccCCCC--C
Confidence            678999999987644 367788899999 9999999999999999987  59999999987   3 68889999888  9


Q ss_pred             EEEEEcCCC-CceeccCCCCCHHHHHHHH
Q 021368          110 VLAYTGNDD-AKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       110 ~i~~~~~~~-~~~~~~~g~~~~~~i~~fi  137 (313)
                      +++++.++. .....|.|..+.+.|.+||
T Consensus        76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence            999998776 4567789999999999885

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.47  E-value=5.9e-14  Score=117.54  Aligned_cols=94  Identities=26%  Similarity=0.555  Sum_probs=82.8

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g  253 (313)
                      +...|+|.||+|||++|+.+.|+|.+++..+++. .-+.++++||+....  .+++|.++||+.+|+++..+    .|.|
T Consensus        42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~----dYRG  117 (468)
T KOG4277|consen   42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI----DYRG  117 (468)
T ss_pred             cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee----ecCC
Confidence            3567999999999999999999999999999875 369999999999887  79999999999999988776    8999


Q ss_pred             CcCHHHHHHHHHhcCCCCccc
Q 021368          254 DRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       254 ~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      +++.+.|+.|...-.+.-++.
T Consensus       118 ~R~Kd~iieFAhR~a~aiI~p  138 (468)
T KOG4277|consen  118 GREKDAIIEFAHRCAAAIIEP  138 (468)
T ss_pred             CccHHHHHHHHHhcccceeee
Confidence            999999999998876544433

>PTZ00051 thioredoxin; Provisional

Probab=99.47  E-value=2.6e-13  Score=99.39  Aligned_cols=91  Identities=25%  Similarity=0.496  Sum_probs=73.2

Q ss_pred             eEEEcC-cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          162 VKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       162 v~~l~~-~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      |..++. +++.+.+ +.++.++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  .+|++.++|++++
T Consensus         2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   77 (98)
T PTZ00051          2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV   77 (98)
T ss_pred             eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence            344544 4566654 678899999999999999999999999999764   48999999987654  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHH
Q 021368          239 FPAGNKSFDPINVDVDRTVVAL  260 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l  260 (313)
                      |++|+.+.   .+.|. ..+.|
T Consensus        78 ~~~g~~~~---~~~G~-~~~~~   95 (98)
T PTZ00051         78 FKNGSVVD---TLLGA-NDEAL   95 (98)
T ss_pred             EeCCeEEE---EEeCC-CHHHh
Confidence            99998765   77774 44444

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.46  E-value=8.5e-14  Score=116.79  Aligned_cols=106  Identities=25%  Similarity=0.488  Sum_probs=92.6

Q ss_pred             cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC---CcEEEEEEeCCCccc--ccCCCCcCceEEEEe
Q 021368          166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH--HRAKSDGFPTILFFP  240 (313)
Q Consensus       166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~  240 (313)
                      +..+++..+ +....++|.|||.||+..+.++|+|.+.|.+++..   ..+.++.|||+.+..  .+|.|+.|||+-+|+
T Consensus         2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            456777766 56889999999999999999999999999988643   379999999999887  899999999999999


Q ss_pred             CCCCCcCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021368          241 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       241 ~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      +|....  ..|-|.++++.|.+||++.++.++.-
T Consensus        81 nG~~~~--rEYRg~RsVeaL~efi~kq~s~~i~E  112 (375)
T KOG0912|consen   81 NGEMMK--REYRGQRSVEALIEFIEKQLSDPINE  112 (375)
T ss_pred             ccchhh--hhhccchhHHHHHHHHHHHhccHHHH
Confidence            998753  38999999999999999998876543

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.45  E-value=3.7e-13  Score=99.59  Aligned_cols=100  Identities=22%  Similarity=0.325  Sum_probs=87.8

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      +..+++.+|+..+..+..++|.||++| ++|+.+.|.+.+++..+.  +.+.|+.+||+... +..+++++||+++  |+
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~--Pt   78 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGF--PT   78 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCccc--cE
Confidence            678888999998888888889999999 999999999999999998  56999999999854 6699999999998  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      ++++++|. ....+.|..+.+.+.+|+
T Consensus        79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          79 FKYFENGK-FVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence            99998765 456789999999998875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.44  E-value=2.9e-13  Score=99.35  Aligned_cols=82  Identities=16%  Similarity=0.226  Sum_probs=73.3

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC-CcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  125 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~-~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~  125 (313)
                      +++.++|.||++| ++|+.+.|.|+++++.+.+ +.|+.||++ +   ++.++++|+|.++  ||+++|+++  ....|.
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~---~~~l~~~~~V~~~--PT~~lf~~g--~~~~~~   88 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSI---KPSLLSRYGVVGF--PTILLFNST--PRVRYN   88 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCC---CHHHHHhcCCeec--CEEEEEcCC--ceeEec
Confidence            4567888999999 9999999999999999987 889999998 5   5699999999999  999999877  467789


Q ss_pred             CCCCHHHHHHHH
Q 021368          126 GELTLDKIKTFG  137 (313)
Q Consensus       126 g~~~~~~i~~fi  137 (313)
                      |.++.++|.+|+
T Consensus        89 G~~~~~~l~~f~  100 (100)
T cd02999          89 GTRTLDSLAAFY  100 (100)
T ss_pred             CCCCHHHHHhhC
Confidence            999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=5.7e-13  Score=108.95  Aligned_cols=101  Identities=27%  Similarity=0.456  Sum_probs=84.7

Q ss_pred             eEEEc-CcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          162 VKIVV-GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l~-~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      |..++ +.+|+..+. ...+.++|.|+++||++|+...|+|..++++|..   ..|.++|++....  ..++|...||++
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi   79 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI   79 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence            34443 456777663 3458999999999999999999999999999964   7999999998766  688999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|.+|.+++   .+.| .+...|.+-+.++++
T Consensus        80 ff~ng~kid---~~qG-Ad~~gLe~kv~~~~s  107 (288)
T KOG0908|consen   80 FFRNGVKID---QIQG-ADASGLEEKVAKYAS  107 (288)
T ss_pred             EEecCeEee---eecC-CCHHHHHHHHHHHhc
Confidence            999999875   7877 588889999988875

>PRK10996 thioredoxin 2; Provisional

Probab=99.42  E-value=8.1e-13  Score=103.03  Aligned_cols=104  Identities=18%  Similarity=0.242  Sum_probs=91.1

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      ...+..++..+|+.++..+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||+++   ++.++++|+|.++  |
T Consensus        34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~V~~~--P  108 (139)
T PRK10996         34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA---ERELSARFRIRSI--P  108 (139)
T ss_pred             CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC---CHHHHHhcCCCcc--C
Confidence            335667888899998888888899999999 999999999999999999889999999988   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      ++++|++|+ ....+.|..+.+.|.+|+.+.
T Consensus       109 tlii~~~G~-~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        109 TIMIFKNGQ-VVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEEEEECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence            999998664 344568899999999999875

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.42  E-value=4.2e-13  Score=98.33  Aligned_cols=97  Identities=19%  Similarity=0.299  Sum_probs=85.2

Q ss_pred             EeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhc--cCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           36 IFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        36 ~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~--~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      +++.++|.+.+.++..++|+||++| +.|+.+.+.|.+++..+  .+.+.|+.+||+.   +..+|++++|+++  |+++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--Pt~~   76 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGY--PTIK   76 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCC--CEEE
Confidence            4677788888888778899999999 99999999999999999  5779999999998   6799999999988  9999


Q ss_pred             EEcCCCCceeccCCCCCHHHHHHHH
Q 021368          113 YTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       113 ~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      ++..++.....|.|..+.+.|.+|+
T Consensus        77 ~~~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          77 LFPNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             EEcCCCcccccCCCCcCHHHHHhhC
Confidence            9987744566788999999998874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.41  E-value=1.3e-12  Score=95.35  Aligned_cols=92  Identities=18%  Similarity=0.344  Sum_probs=77.4

Q ss_pred             cccccc-cC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368           41 NAPSVF-ES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        41 ~~~~~~-~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~  117 (313)
                      +|++.+ .. +..++|.||++| ++|+.+.|.|.+++..+.+.+.|+.|||+.   +..++++|+|.++  |+++++..|
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~i~~~--Pt~~~~~~g   76 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA---QPQIAQQFGVQAL--PTVYLFAAG   76 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC---CHHHHHHcCCCCC--CEEEEEeCC
Confidence            445444 23 457888999999 999999999999999999889999999999   5699999999998  999999865


Q ss_pred             CCceeccCCCCCHHHHHHHHH
Q 021368          118 DAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       118 ~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      . ....+.|..+.+.|..|+.
T Consensus        77 ~-~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          77 Q-PVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             E-EeeeecCCCCHHHHHHHhC
Confidence            4 3345789999999998873

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.41  E-value=1.3e-12  Score=99.32  Aligned_cols=96  Identities=18%  Similarity=0.181  Sum_probs=76.1

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------cc-
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------HR-  227 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------~~-  227 (313)
                      +..++.+.+.+.+ .+++.++|+|+++||++|+.+.|.+.+++...    ++.++.+|.+.+..             +. 
T Consensus         8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            5567778888877 46788999999999999999999999999973    35677777775421             22 


Q ss_pred             ---CCCCcCceEEEEeCCCCCcCceeecc-CcCHHHHHHHHH
Q 021368          228 ---AKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLK  265 (313)
Q Consensus       228 ---~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~  265 (313)
                         .++.++||+++|++|+.+.   +..| ..+.+.|.+|+.
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk~v~---~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGKQVS---VRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCcccCCCCCEEEEEeCCeEEE---EEeCCCCCHHHHHHHhh
Confidence               3566799999999999875   6777 556899988874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.40  E-value=1.8e-12  Score=93.15  Aligned_cols=89  Identities=30%  Similarity=0.591  Sum_probs=75.2

Q ss_pred             ChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCc
Q 021368          169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSF  246 (313)
Q Consensus       169 ~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~  246 (313)
                      +|.+.+. ..++++|+||++||+.|..+.+.+.+++.. .  .++.++.+|++.+..  ..+++.++|++++|++|....
T Consensus         2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~   77 (93)
T cd02947           2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD   77 (93)
T ss_pred             chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence            5666664 348999999999999999999999999988 2  369999999998654  789999999999999987654


Q ss_pred             CceeeccCcCHHHHHHHH
Q 021368          247 DPINVDVDRTVVALYKFL  264 (313)
Q Consensus       247 ~~~~y~g~~~~~~l~~fi  264 (313)
                         .+.|..+.+.|..||
T Consensus        78 ---~~~g~~~~~~l~~~i   92 (93)
T cd02947          78 ---RVVGADPKEELEEFL   92 (93)
T ss_pred             ---EEecCCCHHHHHHHh
Confidence               788878888888887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.40  E-value=1.2e-12  Score=119.97  Aligned_cols=107  Identities=10%  Similarity=0.138  Sum_probs=91.2

Q ss_pred             CCCceEEeCCCccccccc---CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchh-hhhCC
Q 021368           30 KLPLVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVS-EYFGI  103 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~---~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~-~~~~v  103 (313)
                      ..+.|.+||+.+|+.++.   .+..++|.||++| ++|+.+.|.|+++|.++.+. +.|+.|||+...  ..++ +.|+|
T Consensus       349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I  426 (463)
T TIGR00424       349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQL  426 (463)
T ss_pred             CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCC
Confidence            345899999999999875   6667889999999 99999999999999999875 899999999732  2454 78999


Q ss_pred             CCCCCcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHH
Q 021368          104 TGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDF  140 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~  140 (313)
                      .++  |++++|.++...+..|. |.++.++|..||...
T Consensus       427 ~~~--PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       427 GSF--PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             Ccc--ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            999  99999998876677887 589999999999753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.40  E-value=1.4e-12  Score=96.42  Aligned_cols=93  Identities=39%  Similarity=0.527  Sum_probs=76.9

Q ss_pred             cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368           45 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI  123 (313)
Q Consensus        45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~  123 (313)
                      ....+.+++++|+++| ++|+.+.+.++++|+++++++.|++||+++   ++.+++.|||.....|++++++.+.+.++.
T Consensus         8 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~   84 (103)
T cd02982           8 YEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGKKYL   84 (103)
T ss_pred             hhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEecccccccC
Confidence            3333567888899999 899999999999999999999999999998   568999999993233999999884444566


Q ss_pred             cCCC-CCHHHHHHHHHHH
Q 021368          124 LDGE-LTLDKIKTFGEDF  140 (313)
Q Consensus       124 ~~g~-~~~~~i~~fi~~~  140 (313)
                      +.+. .+.++|.+|+.++
T Consensus        85 ~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          85 MPEEELTAESLEEFVEDF  102 (103)
T ss_pred             CCccccCHHHHHHHHHhh
Confidence            6544 5999999999876

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.3e-12  Score=110.45  Aligned_cols=107  Identities=18%  Similarity=0.239  Sum_probs=92.8

Q ss_pred             CCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           31 LPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~---~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .+.|.+.|..||...+   +...+++|.||++| ++|+.+.|.+++++..+.|++.+++|||+.   ++.++..|||++.
T Consensus        22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~---~p~vAaqfgiqsI   98 (304)
T COG3118          22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA---EPMVAAQFGVQSI   98 (304)
T ss_pred             cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc---chhHHHHhCcCcC
Confidence            3458899999999843   33347788899999 999999999999999999999999999999   6799999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                        |+++.|..|+. --.|.|....+.|++|+.++++.
T Consensus        99 --PtV~af~dGqp-VdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118          99 --PTVYAFKDGQP-VDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             --CeEEEeeCCcC-ccccCCCCcHHHHHHHHHHhcCh
Confidence              99988887762 33478999999999999999874

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.39  E-value=7.8e-13  Score=99.11  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=75.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  125 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~  125 (313)
                      .+.+++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.|||+.   .+.+++++||+++  |+++++..|. ....+.
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~--Pt~~i~~~g~-~~~~~~   96 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---ERRLARKLGAHSV--PAIVGIINGQ-VTFYHD   96 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---cHHHHHHcCCccC--CEEEEEECCE-EEEEec
Confidence            4568899999999 9999999999999999986 49999999998   5599999999999  9999998664 445568


Q ss_pred             CCCCHHHHHHHHHH
Q 021368          126 GELTLDKIKTFGED  139 (313)
Q Consensus       126 g~~~~~~i~~fi~~  139 (313)
                      |..+.+.|.+|+.+
T Consensus        97 G~~~~~~l~~~i~~  110 (111)
T cd02963          97 SSFTKQHVVDFVRK  110 (111)
T ss_pred             CCCCHHHHHHHHhc
Confidence            88999999999875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.39  E-value=2.6e-12  Score=94.58  Aligned_cols=96  Identities=16%  Similarity=0.135  Sum_probs=83.9

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      .+.+++..+|++....+...++.|+++|   ++|..+.|.|.++|+++.+.+.|+.||+++   ++.++.+|||++.  |
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sI--P   85 (111)
T cd02965          11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRT--P   85 (111)
T ss_pred             CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcC--C
Confidence            4678999999998888778889999996   899999999999999999999999999999   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIK  134 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~  134 (313)
                      |+++|.+|. ....+.|..+.+++.
T Consensus        86 Tli~fkdGk-~v~~~~G~~~~~e~~  109 (111)
T cd02965          86 ALLFFRDGR-YVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEEEEECCE-EEEEEeCccCHHHHh
Confidence            999999875 334567877777664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PTZ00062 glutaredoxin; Provisional

Probab=99.39  E-value=3.5e-12  Score=104.77  Aligned_cols=156  Identities=15%  Similarity=0.224  Sum_probs=107.6

Q ss_pred             CcccccccCC-CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368           40 ENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        40 ~~~~~~~~~~-~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~  117 (313)
                      +++.++++.+ ...+++|+++| ++|+.+.+.+.+++.+|.. +.|+.||.+           |+|.+.  |++++|++|
T Consensus         7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v--Ptfv~~~~g   72 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY--GVFEFYQNS   72 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc--eEEEEEECC
Confidence            4455555533 45677788999 9999999999999999977 999999964           899999  999999987


Q ss_pred             CCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEe----CCCCccc
Q 021368          118 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY----APWCGHC  193 (313)
Q Consensus       118 ~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy----~~~C~~C  193 (313)
                      +.. -++.| .+...|..++..+.+...                .. ...+...+++  +.++++|+--    .|+|+.|
T Consensus        73 ~~i-~r~~G-~~~~~~~~~~~~~~~~~~----------------~~-~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C  131 (204)
T PTZ00062         73 QLI-NSLEG-CNTSTLVSFIRGWAQKGS----------------SE-DTVEKIERLI--RNHKILLFMKGSKTFPFCRFS  131 (204)
T ss_pred             EEE-eeeeC-CCHHHHHHHHHHHcCCCC----------------HH-HHHHHHHHHH--hcCCEEEEEccCCCCCCChhH
Confidence            632 23344 679999999988765211                00 0112333333  3455665544    3799999


Q ss_pred             hhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEE
Q 021368          194 QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF  238 (313)
Q Consensus       194 ~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~  238 (313)
                      +.+...|.+.        ++.+..+|+.....  +    .-+-.++|.+++
T Consensus       132 ~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        132 NAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             HHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence            9988887754        45666778876543  1    124457788776

>PTZ00062 glutaredoxin; Provisional

Probab=99.36  E-value=3.5e-12  Score=104.77  Aligned_cols=91  Identities=10%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCC
Q 021368          166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKS  245 (313)
Q Consensus       166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~  245 (313)
                      +.+++.+.+..+...++++|||+||++|+.+.+++.+++..+.   .+.|+.||.+      ++|.++|++++|++|+.+
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d------~~V~~vPtfv~~~~g~~i   75 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA------DANNEYGVFEFYQNSQLI   75 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc------cCcccceEEEEEECCEEE
Confidence            3467777775445789999999999999999999999999885   4999999977      899999999999999988


Q ss_pred             cCceeeccCcCHHHHHHHHHhcCC
Q 021368          246 FDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       246 ~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      .   ++.|. +...|..++.++.+
T Consensus        76 ~---r~~G~-~~~~~~~~~~~~~~   95 (204)
T PTZ00062         76 N---SLEGC-NTSTLVSFIRGWAQ   95 (204)
T ss_pred             e---eeeCC-CHHHHHHHHHHHcC
Confidence            6   88884 67889999988865

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.35  E-value=4.5e-12  Score=95.36  Aligned_cols=100  Identities=14%  Similarity=0.221  Sum_probs=79.8

Q ss_pred             ceEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           33 LVTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      .+.+++..+|...+.... .++|.||++| ++|+.+.|.|++++.++.+   .+.|+.+||+... +..+|++|+|+++ 
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~-   79 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGY-   79 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCC-
Confidence            477899999998775544 6788899999 9999999999999998863   5999999997644 6789999999999 


Q ss_pred             CcEEEEEcCCCC---ceeccCCC-CCHHHHHH
Q 021368          108 PKVLAYTGNDDA---KKHILDGE-LTLDKIKT  135 (313)
Q Consensus       108 ~P~i~~~~~~~~---~~~~~~g~-~~~~~i~~  135 (313)
                       |++++|+.+..   ....|.|. +..++++.
T Consensus        80 -Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02992          80 -PTLRYFPPFSKEATDGLKQEGPERDVNELRE  110 (114)
T ss_pred             -CEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence             99999988752   12345565 66666644

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.35  E-value=3.3e-12  Score=116.97  Aligned_cols=105  Identities=11%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             CCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC-Ccccccchhh-hhCC
Q 021368           31 LPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD-NEDVGKPVSE-YFGI  103 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~---~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~-~~~~~~~l~~-~~~v  103 (313)
                      .+.|..|+.++|+.++   ..+..++|.||++| ++|+.+.|.|.++|.++.+. +.|+.|||+ .   +..+|+ .|+|
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~~I  420 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQELQL  420 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhCCC
Confidence            4578999999999876   46778899999999 99999999999999999874 999999999 5   458886 6999


Q ss_pred             CCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHHHH
Q 021368          104 TGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDF  140 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~  140 (313)
                      .++  ||+++|..+...+..|.| .++.++|..|+...
T Consensus       421 ~~~--PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        421 GSF--PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             cee--eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            999  999999888767788874 79999999999864

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.35  E-value=6.9e-12  Score=92.90  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=78.7

Q ss_pred             CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      ++|+++. ....++|.||++| ++|+.+.|.|.+++..+++   .+.++.+||+.   .+.++++++|.++  |+++++.
T Consensus         7 ~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~I~~~--Pt~~l~~   80 (104)
T cd03000           7 DSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEFGVRGY--PTIKLLK   80 (104)
T ss_pred             hhhhhhc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhcCCccc--cEEEEEc
Confidence            4566654 4568889999999 9999999999999999853   49999999998   5699999999999  9999997


Q ss_pred             CCCCceeccCCCCCHHHHHHHHHHH
Q 021368          116 NDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       116 ~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      ++.  ...+.|..+.+.|..|+.+.
T Consensus        81 ~~~--~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          81 GDL--AYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             CCC--ceeecCCCCHHHHHHHHHhh
Confidence            653  45678999999999999874

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.34  E-value=4.3e-12  Score=97.28  Aligned_cols=96  Identities=15%  Similarity=0.253  Sum_probs=74.1

Q ss_pred             hHHHhhcCC-CcEEEEEeCCCCccchhhhHHHH---HHHHHhcCCCcEEEEEEeCCCcc---------------cccCCC
Q 021368          170 FDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNE---------------HHRAKS  230 (313)
Q Consensus       170 f~~~l~~~~-k~~lv~fy~~~C~~C~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~~---------------~~~~~v  230 (313)
                      +.+.. ..+ ++++|+||++||++|+.+.+.+.   .+...+++  ++.+..+|.+...               ...+++
T Consensus         6 ~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v   82 (125)
T cd02951           6 LAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV   82 (125)
T ss_pred             HHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence            34444 456 99999999999999999999885   56666654  6888889987641               157899


Q ss_pred             CcCceEEEEeCC--CCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          231 DGFPTILFFPAG--NKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       231 ~~~P~i~~~~~g--~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      .++|++++|.++  +.+   .++.|..+.+.+.++|+..+...
T Consensus        83 ~~~Pt~~~~~~~gg~~~---~~~~G~~~~~~~~~~l~~~~~~~  122 (125)
T cd02951          83 RFTPTVIFLDPEGGKEI---ARLPGYLPPDEFLAYLEYVQEKA  122 (125)
T ss_pred             ccccEEEEEcCCCCcee---EEecCCCCHHHHHHHHHHHHhhh
Confidence            999999999764  443   37889888888999888776543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.33  E-value=7.6e-12  Score=92.40  Aligned_cols=84  Identities=17%  Similarity=0.273  Sum_probs=73.0

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC--cCceEEEEeC--CCCCcCceee
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--GFPTILFFPA--GNKSFDPINV  251 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~--~~P~i~~~~~--g~~~~~~~~y  251 (313)
                      +++++++|+++||++|..+.+.+.++|.++++  .+.|+.+|++.+..  ..+++.  ++|++++++.  |.+.    .+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~----~~   85 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY----LM   85 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc----CC
Confidence            68999999999999999999999999999986  69999999998765  789998  9999999988  4443    34


Q ss_pred             c-cCcCHHHHHHHHHhc
Q 021368          252 D-VDRTVVALYKFLKKN  267 (313)
Q Consensus       252 ~-g~~~~~~l~~fi~~~  267 (313)
                      . |..+.+.|.+||.+.
T Consensus        86 ~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          86 PEEELTAESLEEFVEDF  102 (103)
T ss_pred             CccccCHHHHHHHHHhh
Confidence            4 445899999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.33  E-value=1e-11  Score=97.08  Aligned_cols=102  Identities=10%  Similarity=0.169  Sum_probs=85.2

Q ss_pred             CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC
Q 021368           40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD  118 (313)
Q Consensus        40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~  118 (313)
                      ..++.....+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||.+... +..++++|+|.++  |++++|+.++
T Consensus        11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~i--Pt~v~~~~~G   87 (142)
T cd02950          11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGI--PHFVFLDREG   87 (142)
T ss_pred             CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCC--CEEEEECCCC
Confidence            345666677778999999999 99999999999999999888889988887643 4678999999999  9999996444


Q ss_pred             CceeccCCCCCHHHHHHHHHHHhcCC
Q 021368          119 AKKHILDGELTLDKIKTFGEDFLEGK  144 (313)
Q Consensus       119 ~~~~~~~g~~~~~~i~~fi~~~~~~~  144 (313)
                      .....+.|..+.+.|.+++...+.+.
T Consensus        88 ~~v~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          88 NEEGQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence            44556789999999999999998754

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PHA02278 thioredoxin-like protein

Probab=99.31  E-value=4.4e-12  Score=93.19  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=76.7

Q ss_pred             CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-cccchhhhhCCCCCCCcEEEEEcCC
Q 021368           40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~i~~~~~~  117 (313)
                      ++|.+.+..+..++|.||++| ++|+.+.|.|++++.++.+.+.|+.||++... +...++++|+|.+.  ||+++|++|
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i--PT~i~fk~G   82 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST--PVLIGYKDG   82 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc--cEEEEEECC
Confidence            456666677788999999999 99999999999999987776889999998731 12579999999999  999999987


Q ss_pred             CCceeccCCCCCHHHHHHH
Q 021368          118 DAKKHILDGELTLDKIKTF  136 (313)
Q Consensus       118 ~~~~~~~~g~~~~~~i~~f  136 (313)
                      .. ..++.|..+.+.|.++
T Consensus        83 ~~-v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         83 QL-VKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EE-EEEEeCCCCHHHHHhh
Confidence            53 3456788888887765

>TIGR01068 thioredoxin thioredoxin

Probab=99.31  E-value=9.1e-12  Score=91.42  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=80.5

Q ss_pred             CCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           38 TRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        38 t~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      +.+++...+.. +..++|+||++| +.|+.+.+.|.+++.++.+.+.|+.+|++.   +..++++|||..+  |+++++.
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P~~~~~~   76 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE---NPDIAAKYGIRSI--PTLLLFK   76 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcC--CEEEEEe
Confidence            34455555444 347788899999 999999999999999999889999999998   5699999999988  9999997


Q ss_pred             CCCCceeccCCCCCHHHHHHHHHHH
Q 021368          116 NDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       116 ~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      .+. ....+.|..+.+.|.+|+.+.
T Consensus        77 ~g~-~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        77 NGK-EVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             CCc-EeeeecCCCCHHHHHHHHHhh
Confidence            664 345567888999999999864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.30  E-value=4.9e-12  Score=93.78  Aligned_cols=73  Identities=5%  Similarity=-0.001  Sum_probs=64.0

Q ss_pred             ccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368           41 NAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        41 ~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~  117 (313)
                      +|+..+.  .+..++|.||++| ++|+.+.|.|.++|.++.+.+.|+.||+++   ++.++++|||++.  ||+++|++|
T Consensus         4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~---~~~la~~~~V~~i--PTf~~fk~G   78 (114)
T cd02954           4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE---VPDFNKMYELYDP--PTVMFFFRN   78 (114)
T ss_pred             HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHcCCCCC--CEEEEEECC
Confidence            4444443  3556788899999 999999999999999999989999999999   7799999999998  999999987


Q ss_pred             C
Q 021368          118 D  118 (313)
Q Consensus       118 ~  118 (313)
                      .
T Consensus        79 ~   79 (114)
T cd02954          79 K   79 (114)
T ss_pred             E
Confidence            6

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.28  E-value=1.6e-11  Score=92.19  Aligned_cols=91  Identities=19%  Similarity=0.285  Sum_probs=70.2

Q ss_pred             cCcChHHHhhcC-CCcEEEEEeC-------CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c-ccC
Q 021368          166 VGNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRA  228 (313)
Q Consensus       166 ~~~~f~~~l~~~-~k~~lv~fy~-------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~-~~~  228 (313)
                      +.++|.+.+... +++++|.|||       +||++|+.+.|.+.+++..+.+  ++.|+.+|++...        . .++
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~   85 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP   85 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence            346677777543 5899999999       9999999999999999999875  5889999997632        1 678


Q ss_pred             CCC-cCceEEEEeCCCCCcCceeecc--CcCHHHHHHHH
Q 021368          229 KSD-GFPTILFFPAGNKSFDPINVDV--DRTVVALYKFL  264 (313)
Q Consensus       229 ~v~-~~P~i~~~~~g~~~~~~~~y~g--~~~~~~l~~fi  264 (313)
                      ++. ++||+++|+.|.++      .|  -.+...+..|+
T Consensus        86 ~I~~~iPT~~~~~~~~~l------~~~~c~~~~~~~~~~  118 (119)
T cd02952          86 KLTTGVPTLLRWKTPQRL------VEDECLQADLVEMFF  118 (119)
T ss_pred             CcccCCCEEEEEcCCcee------cchhhcCHHHHHHhh
Confidence            888 99999999776542      23  23666666554

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.27  E-value=7.4e-12  Score=94.50  Aligned_cols=91  Identities=23%  Similarity=0.465  Sum_probs=62.9

Q ss_pred             hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCc--CceEEEEe-CCCCCcCcee
Q 021368          175 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDG--FPTILFFP-AGNKSFDPIN  250 (313)
Q Consensus       175 ~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~--~P~i~~~~-~g~~~~~~~~  250 (313)
                      ...+++++|.||++||++|+.+.+.+.+.+.......++..+.+|.+.... ..+++.+  +|++++|. +|+.+.+.+.
T Consensus        16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~   95 (117)
T cd02959          16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN   95 (117)
T ss_pred             HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence            456899999999999999999999999987765432245554455433222 5777775  99999995 7777644445


Q ss_pred             eccCcCHHHHHHHHH
Q 021368          251 VDVDRTVVALYKFLK  265 (313)
Q Consensus       251 y~g~~~~~~l~~fi~  265 (313)
                      ..|..+...+..+|.
T Consensus        96 ~~~~~~~~~f~~~~~  110 (117)
T cd02959          96 KKGNPNYKYFYSSAA  110 (117)
T ss_pred             CCCCccccccCCCHH
Confidence            666555544444443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.26  E-value=3.6e-11  Score=90.24  Aligned_cols=100  Identities=10%  Similarity=0.030  Sum_probs=81.4

Q ss_pred             CceEEeCC-CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           32 PLVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        32 ~~v~~lt~-~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      ..+..++. ++|.+.+..+..++|.||++| ++|+.+.|.|++++.++.+ +.|+.||+++   ++.++++|+|...  |
T Consensus         4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~---~~~l~~~~~v~~v--P   77 (113)
T cd02989           4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK---APFLVEKLNIKVL--P   77 (113)
T ss_pred             CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc---CHHHHHHCCCccC--C
Confidence            45666766 778887777788899999999 9999999999999999987 8999999999   6699999999988  9


Q ss_pred             EEEEEcCCCCcee-----ccC--CCCCHHHHHHHH
Q 021368          110 VLAYTGNDDAKKH-----ILD--GELTLDKIKTFG  137 (313)
Q Consensus       110 ~i~~~~~~~~~~~-----~~~--g~~~~~~i~~fi  137 (313)
                      ++++|.+|.....     .+.  +..+.+++..|+
T Consensus        78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          78 TVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999988763211     111  356777777765

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.25  E-value=2.8e-11  Score=91.02  Aligned_cols=81  Identities=14%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             CCceEEeCCCcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ...+.+++.++|.+.+...   ..++|.||++| ++|+.+.|.|+++|.++.+ +.|+.||+++   + .++++|+|.++
T Consensus         3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~i~~~   77 (113)
T cd02957           3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLDIKVL   77 (113)
T ss_pred             CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcCCCcC
Confidence            3467788888888776544   67788899999 9999999999999999987 8999999987   6 89999999999


Q ss_pred             CCcEEEEEcCCC
Q 021368          107 APKVLAYTGNDD  118 (313)
Q Consensus       107 ~~P~i~~~~~~~  118 (313)
                        |++++|.+|+
T Consensus        78 --Pt~~~f~~G~   87 (113)
T cd02957          78 --PTLLVYKNGE   87 (113)
T ss_pred             --CEEEEEECCE
Confidence              9999998876

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.25  E-value=2.2e-11  Score=95.69  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=71.4

Q ss_pred             CceEEeCCCcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCC--
Q 021368           32 PLVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITG--  105 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~--  105 (313)
                      ..+.++++++|++.+..  ...++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.|||++   ++.++++|+|..  
T Consensus        28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~---~~~la~~~~V~~~~  104 (152)
T cd02962          28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR---FPNVAEKFRVSTSP  104 (152)
T ss_pred             CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC---CHHHHHHcCceecC
Confidence            36788999999987633  346788899999 9999999999999999985 59999999999   669999999987  


Q ss_pred             ----CCCcEEEEEcCCC
Q 021368          106 ----EAPKVLAYTGNDD  118 (313)
Q Consensus       106 ----~~~P~i~~~~~~~  118 (313)
                          +  ||+++|.+|+
T Consensus       105 ~v~~~--PT~ilf~~Gk  119 (152)
T cd02962         105 LSKQL--PTIILFQGGK  119 (152)
T ss_pred             CcCCC--CEEEEEECCE
Confidence                7  9999998776

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.25  E-value=4.8e-11  Score=84.21  Aligned_cols=79  Identities=18%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHH
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV  258 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~  258 (313)
                      .+..||++||++|+.+.+.+.+++..+..  .+.+..+|++.+..  .++++.++|++++  +|..     .+.|..+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~-----~~~G~~~~~   72 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV-----EFIGAPTKE   72 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE-----EEecCCCHH
Confidence            46789999999999999999999998865  58899999887665  6899999999986  5542     788988999


Q ss_pred             HHHHHHHhcC
Q 021368          259 ALYKFLKKNA  268 (313)
Q Consensus       259 ~l~~fi~~~~  268 (313)
                      .|.++|.+.+
T Consensus        73 ~l~~~l~~~~   82 (82)
T TIGR00411        73 ELVEAIKKRL   82 (82)
T ss_pred             HHHHHHHhhC
Confidence            9999998653

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.25  E-value=2.6e-11  Score=93.42  Aligned_cols=103  Identities=10%  Similarity=0.036  Sum_probs=80.4

Q ss_pred             CCcccccc--cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           39 RENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        39 ~~~~~~~~--~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      ..++++.+  .....++|.||++| ++|+.+.|.|.++|.++.+.+.|+.||.++   ++++++.|+|++. +|+++||+
T Consensus        11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe---~~dla~~y~I~~~-~t~~~ffk   86 (142)
T PLN00410         11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE---VPDFNTMYELYDP-CTVMFFFR   86 (142)
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHcCccCC-CcEEEEEE
Confidence            34556555  34556677799999 999999999999999999999999999999   7799999999855 45665888


Q ss_pred             CCCCceeccCC--------CCCHHHHHHHHHHHhcCCC
Q 021368          116 NDDAKKHILDG--------ELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       116 ~~~~~~~~~~g--------~~~~~~i~~fi~~~~~~~~  145 (313)
                      +|+.......|        ..+.++|.+-++.++.|..
T Consensus        87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~  124 (142)
T PLN00410         87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR  124 (142)
T ss_pred             CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence            77533333455        4788888888888876554

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.25  E-value=1.6e-11  Score=90.70  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             CcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC
Q 021368           40 ENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  116 (313)
Q Consensus        40 ~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~  116 (313)
                      ++|+..+..  +..++|.||++| ++|+.+.|.|.+++.++ +.+.|+.||+++......++++|+|.++  |+++++++
T Consensus         4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~--Pt~~~~~~   80 (103)
T cd02985           4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV--PHFLFYKD   80 (103)
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC--CEEEEEeC
Confidence            445555533  567888899999 99999999999999999 5599999999874213589999999999  99999976


Q ss_pred             CCCceeccCCCCCHHHHHHHHHH
Q 021368          117 DDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       117 ~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      |. ....+.| ...+.|.+-+..
T Consensus        81 G~-~v~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          81 GE-KIHEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             Ce-EEEEEeC-CCHHHHHHHHHh
Confidence            64 3455666 556777666543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.25  E-value=2e-11  Score=90.05  Aligned_cols=94  Identities=9%  Similarity=0.124  Sum_probs=77.4

Q ss_pred             CCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           38 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        38 t~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      |.++|+.++..+.+++|.||++| ++|+.+.|.|.+++..+++ .+.|+.+|++.    ..++++|+|+++  |++++++
T Consensus         6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~----~~~~~~~~v~~~--Pt~~~~~   79 (102)
T cd02948           6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT----IDTLKRYRGKCE--PTFLFYK   79 (102)
T ss_pred             CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----HHHHHHcCCCcC--cEEEEEE
Confidence            55667777777878889999999 9999999999999999985 48899999983    378999999999  9999998


Q ss_pred             CCCCceeccCCCCCHHHHHHHHHH
Q 021368          116 NDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       116 ~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      +|.. .....| .+.+.+.++|.+
T Consensus        80 ~g~~-~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          80 NGEL-VAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             CCEE-EEEEec-CChHHHHHHHhh
Confidence            7652 233445 588889888865

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.22  E-value=3.8e-11  Score=88.88  Aligned_cols=97  Identities=15%  Similarity=0.123  Sum_probs=79.4

Q ss_pred             CcccccccCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEEE
Q 021368           40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      +.|.+....+.+++|+||++| ++|+.+.+.+   .+++..+.+.+.++.||++.... ...++++++|.++  |++++|
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~--Pti~~~   79 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP--PTYLFY   79 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC--CEEEEE
Confidence            345666677788899999999 9999999988   68899998779999999976321 3589999999998  999999


Q ss_pred             cC-CCCceeccCCCCCHHHHHHHHH
Q 021368          115 GN-DDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       115 ~~-~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      +. ++.....+.|.++.++|.+++.
T Consensus        80 ~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          80 GPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCCCcccccccCHHHHHHHhC
Confidence            85 3345667889999999988863

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=1.8e-11  Score=111.41  Aligned_cols=118  Identities=28%  Similarity=0.530  Sum_probs=91.9

Q ss_pred             CCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc----
Q 021368          151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----  225 (313)
Q Consensus       151 s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~----  225 (313)
                      +.+..-++.++|..|+.++|+..+..+.+..+|.||++||++|+.+.|.|+++|..+... +-|.++.|||.....    
T Consensus        30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC  109 (606)
T KOG1731|consen   30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC  109 (606)
T ss_pred             CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence            334444456899999999999999888889999999999999999999999999998874 468899999998766    


Q ss_pred             ccCCCCcCceEEEEeCCCCC-cCceeeccCcCHHHHHHHHHhcC
Q 021368          226 HRAKSDGFPTILFFPAGNKS-FDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       226 ~~~~v~~~P~i~~~~~g~~~-~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .+++|+++|++.+|+.+... .....+.|.-...++...+.+.+
T Consensus       110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l  153 (606)
T KOG1731|consen  110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL  153 (606)
T ss_pred             hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence            68999999999999876432 11235555444444544444443

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.22  E-value=6.8e-11  Score=88.22  Aligned_cols=107  Identities=23%  Similarity=0.183  Sum_probs=93.0

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHh---ccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~---~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      |.++|.++...++..+.+..++|| .......+...++++|++   ++|++.|+.+|.+.+.   ...+.||++....|+
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~   76 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV   76 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence            568899999999999988888888 335678899999999999   9999999999999965   589999999855799


Q ss_pred             EEEEcCCCCceec-cCCCCCHHHHHHHHHHHhcCC
Q 021368          111 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK  144 (313)
Q Consensus       111 i~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~~~~~  144 (313)
                      +++...+...+|. +.+..+.++|.+|+.+++.|+
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk  111 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK  111 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence            9999886556777 778999999999999999874

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.7e-10  Score=84.89  Aligned_cols=83  Identities=13%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE  127 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~  127 (313)
                      +...+|.||++| ++|+.+.|.+.++|.+|.+ +.|+.||+++   ...+++.++|+..  ||++|+++|+.. -.+-| 
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~V~~~--PTf~f~k~g~~~-~~~vG-   92 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFNVKAM--PTFVFYKGGEEV-DEVVG-   92 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcCceEe--eEEEEEECCEEE-EEEec-
Confidence            356677899999 9999999999999999999 9999999998   6799999999999  999999888632 22333 


Q ss_pred             CCHHHHHHHHHH
Q 021368          128 LTLDKIKTFGED  139 (313)
Q Consensus       128 ~~~~~i~~fi~~  139 (313)
                      .+.+.+.+.+..
T Consensus        93 a~~~~l~~~i~~  104 (106)
T KOG0907|consen   93 ANKAELEKKIAK  104 (106)
T ss_pred             CCHHHHHHHHHh
Confidence            445566666654

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.15  E-value=2.1e-10  Score=86.11  Aligned_cols=90  Identities=14%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC-Cceecc
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHIL  124 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~~~~  124 (313)
                      ..+...+|+|+++| ++|+.+.|.+++++..+ +.+.|..+|.++   ++.++.+|+|.+.  |++++++++. .....+
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~---~~~l~~~~~v~~v--Pt~~i~~~g~~~~~~~~   93 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE---DKEKAEKYGVERV--PTTIFLQDGGKDGGIRY   93 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc---CHHHHHHcCCCcC--CEEEEEeCCeecceEEE
Confidence            44556667788999 99999999999999987 569999999998   6799999999999  9999998654 234467


Q ss_pred             CCCCCHHHHHHHHHHHhc
Q 021368          125 DGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       125 ~g~~~~~~i~~fi~~~~~  142 (313)
                      .|....+++..||..++.
T Consensus        94 ~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          94 YGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EecCchHHHHHHHHHHHh
Confidence            898999999999998764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.14  E-value=1.2e-10  Score=85.02  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=71.8

Q ss_pred             CcccccccCC--CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC
Q 021368           40 ENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  116 (313)
Q Consensus        40 ~~~~~~~~~~--~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~  116 (313)
                      ++|++.+...  ..++|.||++| ++|+.+.+.|++++.++...+.|+.+|+++   ++.++++|+|.++  |++++|.+
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~---~~~~~~~~~i~~~--Pt~~~~~~   77 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE---LPEISEKFEITAV--PTFVFFRN   77 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc---CHHHHHhcCCccc--cEEEEEEC
Confidence            3455555544  67888999999 999999999999999987679999999988   6699999999988  99999986


Q ss_pred             CCCceeccCCCCCHHHHHHHH
Q 021368          117 DDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       117 ~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      |.. ...+.| ...+.|.+.|
T Consensus        78 g~~-~~~~~g-~~~~~l~~~~   96 (97)
T cd02984          78 GTI-VDRVSG-ADPKELAKKV   96 (97)
T ss_pred             CEE-EEEEeC-CCHHHHHHhh
Confidence            642 223344 5667766654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.13  E-value=6.3e-09  Score=89.62  Aligned_cols=216  Identities=16%  Similarity=0.165  Sum_probs=135.3

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-Cchhh-----hhH-HHHHHHHhccC-eEEEEEEeCCCcccccchhhhhC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEK-----LLP-VFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFG  102 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~-----~~~-~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~  102 (313)
                      -+.|..||..||.+..++-...+|+|+.+. ..-..     +.. .++=+|+-+.. .|.|+.||..+   ..++++++|
T Consensus        33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K---d~klAKKLg  109 (383)
T PF01216_consen   33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK---DAKLAKKLG  109 (383)
T ss_dssp             S--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT---THHHHHHHT
T ss_pred             ccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH---HHHHHHhcC
Confidence            347899999999999887766677777776 32211     112 33334444443 39999999999   459999999


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhc-CCCcE
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD-ESKDV  181 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~-~~k~~  181 (313)
                      +...  +++.+|..+.  .+.|.|.++++.+..|+.+.+.                 .+|..++.+.=.+...+ .....
T Consensus       110 v~E~--~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~e-----------------dPVeiIn~~~e~~~Fe~ied~~k  168 (383)
T PF01216_consen  110 VEEE--GSIYVFKDGE--VIEYDGERSADTLVEFLLDLLE-----------------DPVEIINNKHELKAFERIEDDIK  168 (383)
T ss_dssp             --ST--TEEEEEETTE--EEEE-S--SHHHHHHHHHHHHS-----------------SSEEEE-SHHHHHHHHH--SS-E
T ss_pred             cccc--CcEEEEECCc--EEEecCccCHHHHHHHHHHhcc-----------------cchhhhcChhhhhhhhhccccee
Confidence            9998  8888887764  7788999999999999999987                 56888877544333322 34577


Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeecc-CcCHHHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVAL  260 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l  260 (313)
                      +|-|+.+--+   .....|.++|..|+.  .+.|...= +..-..++++. .=.+-+|..=..  .|+.+-| +.+.+.|
T Consensus       169 lIGyFk~~~s---~~yk~FeeAAe~F~p--~IkFfAtf-d~~vAk~L~lK-~nev~fyepF~~--~pi~ip~~p~~e~e~  239 (383)
T PF01216_consen  169 LIGYFKSEDS---EHYKEFEEAAEHFQP--YIKFFATF-DKKVAKKLGLK-LNEVDFYEPFMD--EPITIPGKPYTEEEL  239 (383)
T ss_dssp             EEEE-SSTTS---HHHHHHHHHHHHCTT--TSEEEEE--SHHHHHHHT-S-TT-EEEE-TTSS--SEEEESSSS--HHHH
T ss_pred             EEEEeCCCCc---HHHHHHHHHHHhhcC--ceeEEEEe-cchhhhhcCcc-ccceeeeccccC--CCccCCCCCCCHHHH
Confidence            7766655322   345678999999987  56665432 22233566664 556778866444  6788887 5678899


Q ss_pred             HHHHHhcCCCCccccCCCC
Q 021368          261 YKFLKKNASIPFKIQKPTS  279 (313)
Q Consensus       261 ~~fi~~~~~~~~~~~~~~~  279 (313)
                      ..||++|-.+..+..+|.+
T Consensus       240 ~~fi~~h~rptlrkl~~~~  258 (383)
T PF01216_consen  240 VEFIEEHKRPTLRKLRPED  258 (383)
T ss_dssp             HHHHHHT-S-SEEE--GGG
T ss_pred             HHHHHHhchhHhhhCChhh
Confidence            9999999888777776643

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.12  E-value=4.2e-09  Score=100.78  Aligned_cols=180  Identities=15%  Similarity=0.102  Sum_probs=135.7

Q ss_pred             EEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc-CCCCceeccCCCCC
Q 021368           53 QLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG-NDDAKKHILDGELT  129 (313)
Q Consensus        53 ~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~-~~~~~~~~~~g~~~  129 (313)
                      .+.+|.+.  ..|.++...+++++ .+.+++.+...|..+   ..++..+||+...  |++.+.+ .+....+.|.|-..
T Consensus       369 ~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~---~~~~~~~~~v~~~--P~~~i~~~~~~~~~i~f~g~P~  442 (555)
T TIGR03143       369 TLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE---EPESETLPKITKL--PTVALLDDDGNYTGLKFHGVPS  442 (555)
T ss_pred             EEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc---chhhHhhcCCCcC--CEEEEEeCCCcccceEEEecCc
Confidence            34455544  58999999999999 666779998888876   4588999999988  9999985 44344578899999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcE-EEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368          130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLR  208 (313)
Q Consensus       130 ~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~  208 (313)
                      -.++..||..++.-.-.               -..|+.+.. +.|..-++++ +-.|.+++|+.|..+...+.+++....
T Consensus       443 G~Ef~s~i~~i~~~~~~---------------~~~l~~~~~-~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~  506 (555)
T TIGR03143       443 GHELNSFILALYNAAGP---------------GQPLGEELL-EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP  506 (555)
T ss_pred             cHhHHHHHHHHHHhcCC---------------CCCCCHHHH-HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC
Confidence            99999999888652111               112433333 3454556665 556689999999999888888887743


Q ss_pred             CCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          209 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       209 ~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                         ++..-.+|......  .+|+|.++|++++  +|..     .+.|..+.++|+.||
T Consensus       507 ---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~-----~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       507 ---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ-----VYFGKKTIEEMLELI  554 (555)
T ss_pred             ---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE-----EEeeCCCHHHHHHhh
Confidence               57778888888776  6999999999998  4443     678988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.11  E-value=4.8e-10  Score=82.52  Aligned_cols=89  Identities=13%  Similarity=0.023  Sum_probs=70.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceecc--
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL--  124 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~--  124 (313)
                      ..+.++|.|+++| ++|+.+.|.|.++|.++.+.+.|+.||.++   .+++++.|+|+..  |++++|.+|+.-...+  
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe---v~dva~~y~I~am--Ptfvffkngkh~~~d~gt   87 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK---VPVYTQYFDISYI--PSTIFFFNGQHMKVDYGS   87 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc---cHHHHHhcCceeC--cEEEEEECCcEEEEecCC
Confidence            4556777799999 999999999999999998889999999998   7799999999988  9988998776433333  


Q ss_pred             ------CCC-CCHHHHHHHHHHHh
Q 021368          125 ------DGE-LTLDKIKTFGEDFL  141 (313)
Q Consensus       125 ------~g~-~~~~~i~~fi~~~~  141 (313)
                            .+. .+.+.+..-++-..
T Consensus        88 ~~~~k~~~~~~~k~~~idi~e~~y  111 (114)
T cd02986          88 PDHTKFVGSFKTKQDFIDLIEVIY  111 (114)
T ss_pred             CCCcEEEEEcCchhHHHHHHHHHH
Confidence                  122 34566666666544

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.10  E-value=2.7e-10  Score=95.68  Aligned_cols=89  Identities=11%  Similarity=0.176  Sum_probs=71.0

Q ss_pred             CCcEEEEEeC---CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeec
Q 021368          178 SKDVLLEIYA---PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVD  252 (313)
Q Consensus       178 ~k~~lv~fy~---~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~  252 (313)
                      +...++.|++   +||++|+.+.|.+.+++..+... .+.++.+|.+.+..  .+|+|.++||+++|++|..+  ..+|.
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~-~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~--~~~~~   95 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKL-KLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG--GIRYT   95 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc-eEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee--EEEEe
Confidence            3445667888   99999999999999999988432 35566666555554  79999999999999998863  24789


Q ss_pred             cCcCHHHHHHHHHhcCC
Q 021368          253 VDRTVVALYKFLKKNAS  269 (313)
Q Consensus       253 g~~~~~~l~~fi~~~~~  269 (313)
                      |..+.+.|.+||...+.
T Consensus        96 G~~~~~~l~~~i~~~~~  112 (215)
T TIGR02187        96 GIPAGYEFAALIEDIVR  112 (215)
T ss_pred             ecCCHHHHHHHHHHHHH
Confidence            98888999999998854

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.10  E-value=4.5e-10  Score=90.78  Aligned_cols=102  Identities=10%  Similarity=0.110  Sum_probs=82.8

Q ss_pred             CCceEEeCC-CcccccccCCC---ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIFTR-ENAPSVFESPI---KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~lt~-~~~~~~~~~~~---~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ...+.+++. ++|...+....   .++|.||++| ++|+.+.|.|.++|.++.. +.|+.||++.   . .++..|+|..
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~---~-~l~~~f~v~~  135 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASA---T-GASDEFDTDA  135 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccc---h-hhHHhCCCCC
Confidence            567889998 88888775433   6778899999 9999999999999999976 9999999987   4 7899999998


Q ss_pred             CCCcEEEEEcCCCCceec------cCCCCCHHHHHHHHHH
Q 021368          106 EAPKVLAYTGNDDAKKHI------LDGELTLDKIKTFGED  139 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~------~~g~~~~~~i~~fi~~  139 (313)
                      .  ||+++|.+|......      .....+.+.|..|+.+
T Consensus       136 v--PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         136 L--PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             C--CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            8  999999887632111      1235788888888765

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.09  E-value=5e-10  Score=81.73  Aligned_cols=86  Identities=20%  Similarity=0.338  Sum_probs=73.9

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  125 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~  125 (313)
                      +.+..++++|+++| +.|+.+.|.++++++++.+.+.++.+|+++   +++++++++|.++  |+++++++++ ....+.
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~---~~~l~~~~~v~~v--Pt~~i~~~g~-~v~~~~   84 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE---DQEIAEAAGIMGT--PTVQFFKDKE-LVKEIS   84 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCeec--cEEEEEECCe-EEEEEe
Confidence            45556778899999 999999999999999999889999999988   5699999999988  9999998654 455678


Q ss_pred             CCCCHHHHHHHHH
Q 021368          126 GELTLDKIKTFGE  138 (313)
Q Consensus       126 g~~~~~~i~~fi~  138 (313)
                      |..+.+.|.+|++
T Consensus        85 g~~~~~~~~~~l~   97 (97)
T cd02949          85 GVKMKSEYREFIE   97 (97)
T ss_pred             CCccHHHHHHhhC
Confidence            8899999888863

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.05  E-value=4.7e-10  Score=77.82  Aligned_cols=73  Identities=21%  Similarity=0.269  Sum_probs=58.3

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC-cCHHHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVAL  260 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l  260 (313)
                      -|.||++||++|+.+.+.+.+++.++..  .+.+..+| +.....++++.++|++++  +|..     .+.|. .+.+.|
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~-----~~~G~~~~~~~l   71 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL-----VIMGKIPSKEEI   71 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE-----EEEeccCCHHHH
Confidence            3789999999999999999999999865  58888777 223346899999999999  6654     47774 566778


Q ss_pred             HHHH
Q 021368          261 YKFL  264 (313)
Q Consensus       261 ~~fi  264 (313)
                      .+++
T Consensus        72 ~~~l   75 (76)
T TIGR00412        72 KEIL   75 (76)
T ss_pred             HHHh
Confidence            7776

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PTZ00051 thioredoxin; Provisional

Probab=99.03  E-value=6.5e-10  Score=81.22  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=71.3

Q ss_pred             CCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368           39 RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        39 ~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~  117 (313)
                      .+++..+...+..+++.||++| ++|+.+.+.|.+++.++.+ +.|+.+|+++   +..++++|+|.++  |+++++..|
T Consensus         8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~~~g   81 (98)
T PTZ00051          8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDE---LSEVAEKENITSM--PTFKVFKNG   81 (98)
T ss_pred             HHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcc---hHHHHHHCCCcee--eEEEEEeCC
Confidence            4567777777778889999999 9999999999999999887 8999999998   5699999999998  999999766


Q ss_pred             CCceeccCCCCCHHHHH
Q 021368          118 DAKKHILDGELTLDKIK  134 (313)
Q Consensus       118 ~~~~~~~~g~~~~~~i~  134 (313)
                      . ....+.| ...+.|.
T Consensus        82 ~-~~~~~~G-~~~~~~~   96 (98)
T PTZ00051         82 S-VVDTLLG-ANDEALK   96 (98)
T ss_pred             e-EEEEEeC-CCHHHhh
Confidence            4 2334455 3445543

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.02  E-value=1.4e-09  Score=77.82  Aligned_cols=91  Identities=20%  Similarity=0.280  Sum_probs=75.1

Q ss_pred             cccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCC
Q 021368           41 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA  119 (313)
Q Consensus        41 ~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~  119 (313)
                      +|...+......+++|+++| +.|..+.+.|.+++.. .+.+.|+.+|++.   +..+++.+++.++  |+++++..|. 
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~v~~~--P~~~~~~~g~-   74 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE---NPELAEEYGVRSI--PTFLFFKNGK-   74 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC---ChhHHHhcCcccc--cEEEEEECCE-
Confidence            34555555567888999999 9999999999999999 5569999999998   5699999999988  9999998775 


Q ss_pred             ceeccCCCCCHHHHHHHHH
Q 021368          120 KKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       120 ~~~~~~g~~~~~~i~~fi~  138 (313)
                      ....+.|..+.+.|.+|++
T Consensus        75 ~~~~~~g~~~~~~l~~~i~   93 (93)
T cd02947          75 EVDRVVGADPKEELEEFLE   93 (93)
T ss_pred             EEEEEecCCCHHHHHHHhC
Confidence            3455678788899988863

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.02  E-value=1.2e-09  Score=104.33  Aligned_cols=98  Identities=28%  Similarity=0.465  Sum_probs=76.8

Q ss_pred             cCcChHHHhh---cCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcC
Q 021368          166 VGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGF  233 (313)
Q Consensus       166 ~~~~f~~~l~---~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~  233 (313)
                      +.+++++.+.   .++|+++|+||++||.+|+.+.+.+   .++.+.++   ++.+.++|++.++.      +++++.++
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~  535 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL  535 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence            3466666663   3468999999999999999998865   56666664   47889999987642      57999999


Q ss_pred             ceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          234 PTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       234 P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      |++++|+ +|+.+ +..++.|..+.+.+.+++++.
T Consensus       536 Pt~~~~~~~G~~i-~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        536 PTILFFDAQGQEI-PDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CEEEEECCCCCCc-ccccccCCCCHHHHHHHHHHh
Confidence            9999996 56653 234788999999999999875

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.98  E-value=1.1e-08  Score=78.49  Aligned_cols=111  Identities=19%  Similarity=0.256  Sum_probs=85.5

Q ss_pred             CceEEeCCCcccc-cccCCCccEEEEEeeC------CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhhhCC
Q 021368           32 PLVTIFTRENAPS-VFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        32 ~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~------~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      +.+.+|+.+++.. .=..+ .+=|+.+.+.      ..-..+...++++|++|+++ +.|+++|.++.   ..+.+.|||
T Consensus         2 ~~~~~l~~~~~~~~~C~~~-~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl   77 (130)
T cd02983           2 PEIIELTSEDVFEETCEEK-QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNI   77 (130)
T ss_pred             CceEEecCHHHHHhhccCC-CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCC
Confidence            4577888766532 33233 3444444443      23467899999999999999 99999999994   469999999


Q ss_pred             CCCCCcEEEEEcCCCCceec-cCCCCCHHHHHHHHHHHhcCCCCC
Q 021368          104 TGEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKP  147 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~~~~~~~~  147 (313)
                      .+...|++++++.... +|. +.|..+.++|.+|+.+++.|++..
T Consensus        78 ~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~  121 (130)
T cd02983          78 GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT  121 (130)
T ss_pred             CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence            8755699999988654 676 789999999999999999998854

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.98  E-value=1.5e-09  Score=82.48  Aligned_cols=101  Identities=12%  Similarity=0.122  Sum_probs=76.7

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------cccchhhhhCC
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------VGKPVSEYFGI  103 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------~~~~l~~~~~v  103 (313)
                      .+..++.+.+.+.+..+...+|+|+++| ++|+.+.|.|.+++.+  .++.|++||.+...        ...++.+.+++
T Consensus         7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i   84 (122)
T TIGR01295         7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI   84 (122)
T ss_pred             cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence            4566777888888888878899999999 9999999999999998  33678888887421        01245566654


Q ss_pred             ----CCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHH
Q 021368          104 ----TGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGE  138 (313)
Q Consensus       104 ----~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~i~~fi~  138 (313)
                          .+.  |+++++.+|..... ..| ..+.++|.+|+.
T Consensus        85 ~~~i~~~--PT~v~~k~Gk~v~~-~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        85 PTSFMGT--PTFVHITDGKQVSV-RCGSSTTAQELQDIAA  121 (122)
T ss_pred             cccCCCC--CEEEEEeCCeEEEE-EeCCCCCHHHHHHHhh
Confidence                446  99999998874433 345 678999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.6e-09  Score=86.93  Aligned_cols=97  Identities=11%  Similarity=0.137  Sum_probs=78.0

Q ss_pred             CCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368           38 TRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        38 t~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      ++.+|+.-+.  ..+.++|.|++.| ++|++++|+|..+|.+|.+ ..|.+||.+++.   ..+..+||.+.  ||+++|
T Consensus         8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~---~taa~~gV~am--PTFiff   81 (288)
T KOG0908|consen    8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECR---GTAATNGVNAM--PTFIFF   81 (288)
T ss_pred             CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhh---chhhhcCcccC--ceEEEE
Confidence            3444554332  2335567799999 9999999999999999988 899999999965   88999999999  999999


Q ss_pred             cCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          115 GNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       115 ~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .++.  ++..--..+...|+..+.++++
T Consensus        82 ~ng~--kid~~qGAd~~gLe~kv~~~~s  107 (288)
T KOG0908|consen   82 RNGV--KIDQIQGADASGLEEKVAKYAS  107 (288)
T ss_pred             ecCe--EeeeecCCCHHHHHHHHHHHhc
Confidence            9875  3333334788999999999876

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.92  E-value=3.5e-09  Score=98.53  Aligned_cols=87  Identities=15%  Similarity=0.258  Sum_probs=67.9

Q ss_pred             hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC----------------------------CCccc-
Q 021368          175 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG----------------------------TTNEH-  225 (313)
Q Consensus       175 ~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~----------------------------~~~~~-  225 (313)
                      +..+++++|+|||+||++|+.++|.+.+++.+++.. ++.+..|..                            +.+.. 
T Consensus        53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l  131 (521)
T PRK14018         53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL  131 (521)
T ss_pred             ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence            347899999999999999999999999999988743 355544432                            11111 


Q ss_pred             -ccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHH
Q 021368          226 -HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLK  265 (313)
Q Consensus       226 -~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~  265 (313)
                       ..|++.++|+++++ ++|+.+.   .+.|..+.+.|..+|.
T Consensus       132 ak~fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        132 AQSLNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIR  170 (521)
T ss_pred             HHHcCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHH
Confidence             56899999999776 6676654   7889999999999998

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.92  E-value=4e-09  Score=80.74  Aligned_cols=100  Identities=14%  Similarity=0.181  Sum_probs=79.0

Q ss_pred             cccccCC-CccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCcc----------cccchhhhhCCCCCC
Q 021368           43 PSVFESP-IKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED----------VGKPVSEYFGITGEA  107 (313)
Q Consensus        43 ~~~~~~~-~~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~----------~~~~l~~~~~v~~~~  107 (313)
                      ......+ .+.+|.|+++| ++|+.+.+.+.   .+...+.+.+.++.||.+...          ....++.+|+|.++ 
T Consensus         7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~-   85 (125)
T cd02951           7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT-   85 (125)
T ss_pred             HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc-
Confidence            3344555 78899999999 99999999885   577777667889999987631          03578999999988 


Q ss_pred             CcEEEEEcCC-CCceeccCCCCCHHHHHHHHHHHhcCC
Q 021368          108 PKVLAYTGND-DAKKHILDGELTLDKIKTFGEDFLEGK  144 (313)
Q Consensus       108 ~P~i~~~~~~-~~~~~~~~g~~~~~~i~~fi~~~~~~~  144 (313)
                       |++++++++ +.....+.|..+.+.+..+++.++++.
T Consensus        86 -Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~  122 (125)
T cd02951          86 -PTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA  122 (125)
T ss_pred             -cEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence             999999886 445556789999999999999987643

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.92  E-value=8.2e-10  Score=82.78  Aligned_cols=84  Identities=20%  Similarity=0.386  Sum_probs=59.1

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHH---HhcCCCcEEEEEEeCCCcc----------------------cccCCC
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE----------------------HHRAKS  230 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~---~~~~~~~v~~~~vd~~~~~----------------------~~~~~v  230 (313)
                      .++++++++|+++||+.|+.+.+.+.....   .++.  ++.+..+++....                      ...+++
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            467899999999999999999999886544   3333  5677777776532                      156899


Q ss_pred             CcCceEEEEe-CCCCCcCceeeccCcCHHHHHHHH
Q 021368          231 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       231 ~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      .++|+++++. +|+.+.   .+.|..+.++|.++|
T Consensus        81 ~gtPt~~~~d~~G~~v~---~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDKDGKIVY---RIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred             CccCEEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence            9999999995 566553   788999999998875

...

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.91  E-value=9.1e-09  Score=72.42  Aligned_cols=78  Identities=17%  Similarity=0.128  Sum_probs=67.1

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  131 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~  131 (313)
                      +.+|+++| ++|+.+.+.+.+++..+++.+.+..||+++   ++.+++++|+.++  |++++  +|.   ..+.|..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~v--Pt~~~--~g~---~~~~G~~~~~   72 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAV--PAIVI--NGD---VEFIGAPTKE   72 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccC--CEEEE--CCE---EEEecCCCHH
Confidence            56799999 999999999999999998889999999987   5699999999999  99865  332   3567888999


Q ss_pred             HHHHHHHHH
Q 021368          132 KIKTFGEDF  140 (313)
Q Consensus       132 ~i~~fi~~~  140 (313)
                      .|.+++.+.
T Consensus        73 ~l~~~l~~~   81 (82)
T TIGR00411        73 ELVEAIKKR   81 (82)
T ss_pred             HHHHHHHhh
Confidence            999988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.91  E-value=7.9e-09  Score=81.47  Aligned_cols=86  Identities=13%  Similarity=0.186  Sum_probs=60.9

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc----------cc---ccC---CCCcCceEEEEeC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------EH---HRA---KSDGFPTILFFPA  241 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------~~---~~~---~v~~~P~i~~~~~  241 (313)
                      ++..+|+||++||++|+..+|.+.+++++++-  .+..+.+|....          ..   ..+   ++.++|+.+++..
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            55679999999999999999999999988742  343334443210          01   123   6789999999965


Q ss_pred             -CCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          242 -GNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       242 -g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                       |..+  ...+.|..+.+.|.+.|.+.
T Consensus       128 ~G~~i--~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       128 NTRKA--YPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCEE--EEEeecccCHHHHHHHHHHh
Confidence             4432  12577888999888888764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PHA02125 thioredoxin-like protein

Probab=98.89  E-value=4.7e-09  Score=72.65  Aligned_cols=67  Identities=16%  Similarity=0.351  Sum_probs=50.4

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc-CcCHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVV  258 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~  258 (313)
                      +++||++||++|+.+.+.+.+++        +.++.+|.+.+..  .+|++.++|+++   .|..+.   .+.| ..+..
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~---~~~G~~~~~~   67 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD---RFTGVPRNVA   67 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE---EEeCCCCcHH
Confidence            78999999999999999987652        4577888877655  789999999987   454443   6777 34445


Q ss_pred             HHHH
Q 021368          259 ALYK  262 (313)
Q Consensus       259 ~l~~  262 (313)
                      .|.+
T Consensus        68 ~l~~   71 (75)
T PHA02125         68 ELKE   71 (75)
T ss_pred             HHHH
Confidence            5544

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.88  E-value=8.1e-09  Score=76.91  Aligned_cols=102  Identities=24%  Similarity=0.320  Sum_probs=80.3

Q ss_pred             eEEeCCCcccccccCCCccEEEEEee----C-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAV----S-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~----~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      |.++|.++...++..+  .++.+|+-    . ...+.+...+.++|++|+ |++.|+.+|.+++.   ...+.||+....
T Consensus         1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~   75 (111)
T cd03073           1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSG   75 (111)
T ss_pred             CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCccc
Confidence            3567888888776543  34444433    3 556789999999999999 79999999999844   688999999744


Q ss_pred             --CcEEEEEcCCCCceeccCCCC-CHHHHHHHHHHHh
Q 021368          108 --PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL  141 (313)
Q Consensus       108 --~P~i~~~~~~~~~~~~~~g~~-~~~~i~~fi~~~~  141 (313)
                        .|++++.+.+. .+|.+.+.. +.++|.+|+.+++
T Consensus        76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence              69999987654 677778888 9999999999863

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.88  E-value=1e-08  Score=84.06  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=79.7

Q ss_pred             cCCCceEEeCCCccccccc-CC--CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368           29 NKLPLVTIFTRENAPSVFE-SP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        29 ~~~~~v~~lt~~~~~~~~~-~~--~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      .....|.+++..+|...+. .+  ..++|.||++| ++|+.+.|.|.++|.+|.. +.|+.||++.      .+..|++.
T Consensus        79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~------~~~~~~i~  151 (192)
T cd02988          79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ------CIPNYPDK  151 (192)
T ss_pred             CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH------hHhhCCCC
Confidence            3467899999998886543 22  35677899999 9999999999999999976 9999999975      25789999


Q ss_pred             CCCCcEEEEEcCCCCcee-----ccCC-CCCHHHHHHHHHH
Q 021368          105 GEAPKVLAYTGNDDAKKH-----ILDG-ELTLDKIKTFGED  139 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~-----~~~g-~~~~~~i~~fi~~  139 (313)
                      ..  ||+++|.+|.....     .+.| ..+.+.|..++.+
T Consensus       152 ~l--PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         152 NL--PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CC--CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            88  99999998863211     1223 5788888887765

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02740 TraF-like TraF-like protein

Probab=98.87  E-value=8.1e-09  Score=89.33  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=66.4

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-----------ccccCCCCcCceEEEEeC-CCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------EHHRAKSDGFPTILFFPA-GNK  244 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------~~~~~~v~~~P~i~~~~~-g~~  244 (313)
                      .+++++|+||++||++|+.+.|.+.+++.++.-  .+..+.+|....           ....++|.++|+++++.. |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            368999999999999999999999999999842  344444443221           115889999999999986 554


Q ss_pred             CcCceeeccCcCHHHHHHHHHhcCC
Q 021368          245 SFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       245 ~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +.  ....|..+.+.|.+.|...+.
T Consensus       243 v~--~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FT--PIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EE--EEEeCCCCHHHHHHHHHHHhc
Confidence            31  235577899999998877643

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.84  E-value=1.4e-08  Score=77.03  Aligned_cols=69  Identities=22%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             hcCCCcEEEEEeCCCCccchhhhHH-H--HHHHHHhcCCCcEEEEEEeCCCccc--c--------cCCCCcCceEEEEe-
Q 021368          175 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--H--------RAKSDGFPTILFFP-  240 (313)
Q Consensus       175 ~~~~k~~lv~fy~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~--------~~~v~~~P~i~~~~-  240 (313)
                      ...+|+++|+|+++||+.|+.|... |  .+++..+..  ++.++.+|.+....  +        .+++.++|+++++. 
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~   89 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP   89 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            4678999999999999999999764 3  356666654  68999999887653  1        25889999999994 


Q ss_pred             CCCCC
Q 021368          241 AGNKS  245 (313)
Q Consensus       241 ~g~~~  245 (313)
                      +|+.+
T Consensus        90 ~G~~~   94 (124)
T cd02955          90 DLKPF   94 (124)
T ss_pred             CCCEE
Confidence            56654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.81  E-value=4.1e-08  Score=79.47  Aligned_cols=104  Identities=19%  Similarity=0.291  Sum_probs=76.6

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc---------------
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------  224 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---------------  224 (313)
                      ..+..++++.+.-... .+++++|+||++||+.|+...+.+.++..++.+. .+.+..++++...               
T Consensus        44 ~~~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~  121 (173)
T PRK03147         44 FVLTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFP  121 (173)
T ss_pred             cEeecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence            3455566655543222 4688999999999999999999999999999764 4777777765321               


Q ss_pred             -------c--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          225 -------H--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       225 -------~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                             .  +.+++..+|+++++..+..+  ...+.|..+.+.+.+++.+.
T Consensus       122 ~~~d~~~~~~~~~~v~~~P~~~lid~~g~i--~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        122 VAIDKGRQVIDAYGVGPLPTTFLIDKDGKV--VKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             EEECCcchHHHHcCCCCcCeEEEECCCCcE--EEEEeCCCCHHHHHHHHHHh
Confidence                   1  57899999999999644432  12678888999999988753

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.81  E-value=4e-08  Score=74.64  Aligned_cols=104  Identities=9%  Similarity=0.130  Sum_probs=84.2

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC----CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~----~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ....++..+++........ .|+|+..+    +.+....=++.+++.+|.+ ++.|+.||++.   ++.++.+|||.+. 
T Consensus        18 g~~~~~~~~~~~~~~~~~~-~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV~si-   92 (132)
T PRK11509         18 GWTPVSESRLDDWLTQAPD-GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRF-   92 (132)
T ss_pred             CCCccccccHHHHHhCCCc-EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCCccC-
Confidence            4555666788887766644 44455444    6788889999999999985 59999999999   6799999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                       |++++|++|+. .-.+.|.++.+.+.++|.+++..
T Consensus        93 -PTLl~FkdGk~-v~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         93 -PATLVFTGGNY-RGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             -CEEEEEECCEE-EEEEeCcCCHHHHHHHHHHHhcC
Confidence             99999998863 33467889999999999999874

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.79  E-value=2.7e-08  Score=81.54  Aligned_cols=85  Identities=21%  Similarity=0.317  Sum_probs=63.5

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------------------ccCCC
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------HRAKS  230 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------------------~~~~v  230 (313)
                      ..+++++|+||++||++|+..+|.+.++..+     ++.+..++.+....                         ..|++
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  140 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  140 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence            3578999999999999999999999988642     35555565433210                         25688


Q ss_pred             CcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          231 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       231 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .++|+.+++ ++|..+.   .+.|..+.+.|.++|...+
T Consensus       141 ~~~P~t~vid~~G~i~~---~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        141 YGAPETFLIDGNGIIRY---RHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CcCCeEEEECCCceEEE---EEecCCCHHHHHHHHHHHH
Confidence            999987777 4665543   7778888888888887775

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.78  E-value=4.8e-08  Score=79.18  Aligned_cols=86  Identities=23%  Similarity=0.295  Sum_probs=63.3

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------c--ccccCCC
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------N--EHHRAKS  230 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~--~~~~~~v  230 (313)
                      ..+++++|+||++||++|+.+.+.+.+++..     ++.+..++.+.                       +  ....|++
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v  135 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV  135 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence            3578999999999999999999999888653     24444444321                       1  1145788


Q ss_pred             CcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          231 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       231 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      .++|+.+++ ++|+.+.   .+.|..+.+.|.++|.+.+.
T Consensus       136 ~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       136 YGAPETFLVDGNGVILY---RHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eeCCeEEEEcCCceEEE---EEeccCCHHHHHHHHHHHhh
Confidence            899977777 5666543   67788899999999988763

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.77  E-value=2.6e-08  Score=72.26  Aligned_cols=66  Identities=24%  Similarity=0.498  Sum_probs=50.1

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccCCC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAKS  230 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~~v  230 (313)
                      +|+++|+||++||++|+...+.+.++.++++....+.++.+..+....                           ..+++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            578999999999999999999999999999944478888888776421                           12377


Q ss_pred             CcCceEEEEeCCC
Q 021368          231 DGFPTILFFPAGN  243 (313)
Q Consensus       231 ~~~P~i~~~~~g~  243 (313)
                      .++|+++++..+.
T Consensus        81 ~~iP~~~lld~~G   93 (95)
T PF13905_consen   81 NGIPTLVLLDPDG   93 (95)
T ss_dssp             TSSSEEEEEETTS
T ss_pred             CcCCEEEEECCCC
Confidence            7888888886543

...

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.77  E-value=2.7e-08  Score=76.88  Aligned_cols=68  Identities=26%  Similarity=0.499  Sum_probs=52.9

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCcc--------------------------c-ccC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--------------------------H-HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~--------------------------~-~~~  228 (313)
                      .+++++|+||++||++|+..++.+.++...+++. ..+.+..++++...                          . ..|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            4689999999999999999999999999988764 24666666555431                          1 358


Q ss_pred             CCCcCceEEEEeCCCC
Q 021368          229 KSDGFPTILFFPAGNK  244 (313)
Q Consensus       229 ~v~~~P~i~~~~~g~~  244 (313)
                      ++.++|+++++..+.+
T Consensus        96 ~v~~iPt~~lid~~G~  111 (132)
T cd02964          96 KVEGIPTLVVLKPDGD  111 (132)
T ss_pred             CCCCCCEEEEECCCCC
Confidence            8999999999964443

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.76  E-value=2.8e-08  Score=76.64  Aligned_cols=68  Identities=28%  Similarity=0.525  Sum_probs=52.7

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCcc-----------------------c---ccCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE-----------------------H---HRAK  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~-----------------------~---~~~~  229 (313)
                      .+++++|+||++||++|+.+++.+.++...++.. .++.+..++.+...                       .   ..|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            4689999999999999999999999999988753 24656655555331                       1   4689


Q ss_pred             CCcCceEEEEe-CCCC
Q 021368          230 SDGFPTILFFP-AGNK  244 (313)
Q Consensus       230 v~~~P~i~~~~-~g~~  244 (313)
                      +.++|+++++. +|..
T Consensus        97 v~~~P~~~lid~~G~i  112 (131)
T cd03009          97 IEGIPTLIILDADGEV  112 (131)
T ss_pred             CCCCCEEEEECCCCCE
Confidence            99999999996 4443

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.74  E-value=1.4e-07  Score=71.68  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=84.7

Q ss_pred             EEcCcChHHHhhcCCCcEEEEEeCC--CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          164 IVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       164 ~l~~~~f~~~l~~~~k~~lv~fy~~--~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      .++..+++.++. .....+|+|-..  .++.+.-..-++.+++..|.+. .+.++++|++.+..  .+|+|.++||+++|
T Consensus        21 ~~~~~~~~~~~~-~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~F   98 (132)
T PRK11509         21 PVSESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLVF   98 (132)
T ss_pred             ccccccHHHHHh-CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence            466688888873 445566666542  3566777788899999999642 59999999999987  89999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      ++|+.+.   .+.|..+.+.+.+||.+.++.+.
T Consensus        99 kdGk~v~---~i~G~~~k~~l~~~I~~~L~~~~  128 (132)
T PRK11509         99 TGGNYRG---VLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_pred             ECCEEEE---EEeCcCCHHHHHHHHHHHhcCcC
Confidence            9999886   88899999999999999976543

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.73  E-value=3e-08  Score=74.50  Aligned_cols=68  Identities=21%  Similarity=0.240  Sum_probs=58.0

Q ss_pred             CCccEEEEEe-------eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc----cccchhhhhCCC-CCCCcEEEEEc
Q 021368           49 PIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED----VGKPVSEYFGIT-GEAPKVLAYTG  115 (313)
Q Consensus        49 ~~~~~v~f~~-------~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~----~~~~l~~~~~v~-~~~~P~i~~~~  115 (313)
                      +.+.+|.||+       +| ++|+.+.|.+++++.++.+.+.|+.||.++..    .+..+..+++|. +.  ||++++.
T Consensus        21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~i--PT~~~~~   98 (119)
T cd02952          21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGV--PTLLRWK   98 (119)
T ss_pred             CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCC--CEEEEEc
Confidence            5578889999       99 99999999999999999977999999997621    145888999998 88  9999996


Q ss_pred             CCC
Q 021368          116 NDD  118 (313)
Q Consensus       116 ~~~  118 (313)
                      +++
T Consensus        99 ~~~  101 (119)
T cd02952          99 TPQ  101 (119)
T ss_pred             CCc
Confidence            553

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.73  E-value=7.8e-09  Score=84.31  Aligned_cols=102  Identities=23%  Similarity=0.381  Sum_probs=90.1

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      ..++.++.+++...+   ...+++.|+++||+.|+...+.|...+..-.+- .+.++.+|++.|..  =+|-++..|+|+
T Consensus        24 s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIY   99 (248)
T KOG0913|consen   24 SKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIY   99 (248)
T ss_pred             ceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEE
Confidence            468889999999987   457999999999999999999999998876653 69999999999987  588999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      -.++|...    +|.|.++..+++.|+...--
T Consensus       100 HvkDGeFr----rysgaRdk~dfisf~~~r~w  127 (248)
T KOG0913|consen  100 HVKDGEFR----RYSGARDKNDFISFEEHREW  127 (248)
T ss_pred             Eeeccccc----cccCcccchhHHHHHHhhhh
Confidence            99999885    89999999999999987643

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.72  E-value=3.2e-08  Score=77.14  Aligned_cols=68  Identities=18%  Similarity=0.303  Sum_probs=52.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC------CcEEEEEEeCCCccc-------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH-------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~-------------------------  225 (313)
                      .+++++|+|||+||++|+..+|.+.++..++++.      ..+.+..|+.+.+..                         
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            4789999999999999999999999998877542      247777777664311                         


Q ss_pred             --ccCCCCcCceEEEEeCCCC
Q 021368          226 --HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       226 --~~~~v~~~P~i~~~~~g~~  244 (313)
                        ..|++.++|+.+++.....
T Consensus       104 l~~~y~v~~iPt~vlId~~G~  124 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGD  124 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCc
Confidence              2457789999999964433

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.70  E-value=4.6e-08  Score=66.01  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      -+++|+++||++|+.+.+.+.+++....   ++.+..+|.+.+..  .++++.++|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            4788999999999999999999987542   58899999887764  7899999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.69  E-value=5.6e-08  Score=74.53  Aligned_cols=77  Identities=21%  Similarity=0.337  Sum_probs=55.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-----------------------Ccc--cccCCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----------------------TNE--HHRAKSD  231 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------~~~--~~~~~v~  231 (313)
                      .+++++|+||++||+.|+.+.+.+.+++..+.    +.++.++.+                       ...  ...|++.
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~   99 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY   99 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence            47899999999999999999999999987752    445544432                       111  1468999


Q ss_pred             cCceEEEE-eCCCCCcCceeeccCcCHHHH
Q 021368          232 GFPTILFF-PAGNKSFDPINVDVDRTVVAL  260 (313)
Q Consensus       232 ~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l  260 (313)
                      ++|+.+++ ++|..+.   .+.|..+.+.|
T Consensus       100 ~~P~~~~ld~~G~v~~---~~~G~~~~~~~  126 (127)
T cd03010         100 GVPETFLIDGDGIIRY---KHVGPLTPEVW  126 (127)
T ss_pred             CCCeEEEECCCceEEE---EEeccCChHhc
Confidence            99977666 5666543   67787776543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.69  E-value=1.1e-07  Score=72.32  Aligned_cols=92  Identities=25%  Similarity=0.353  Sum_probs=63.0

Q ss_pred             EEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC---------------------
Q 021368          163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------------------  221 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------  221 (313)
                      ..++++.+..... .+++++|+||++||+.|+.+.+.+..+++.+.    +....+|-.                     
T Consensus         6 ~~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (123)
T cd03011           6 TTLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVIND   80 (123)
T ss_pred             ecCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence            3455555555443 45899999999999999999999999887632    222222211                     


Q ss_pred             Cc--ccccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHH
Q 021368          222 TN--EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK  262 (313)
Q Consensus       222 ~~--~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~  262 (313)
                      .+  ....|++.++|+++++.++....   .+.|..+.+.|.+
T Consensus        81 ~~~~~~~~~~i~~~P~~~vid~~gi~~---~~~g~~~~~~~~~  120 (123)
T cd03011          81 PDGVISARWGVSVTPAIVIVDPGGIVF---VTTGVTSEWGLRL  120 (123)
T ss_pred             CCcHHHHhCCCCcccEEEEEcCCCeEE---EEeccCCHHHHHh
Confidence            11  11578999999999997666432   6778778777754

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.67  E-value=8.8e-08  Score=71.36  Aligned_cols=66  Identities=26%  Similarity=0.531  Sum_probs=54.9

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-----------------------cc--ccCCCCc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKSDG  232 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~--~~~~v~~  232 (313)
                      +++++|+||++||+.|+...+.+.++...+.. ..+.++.++++..                       ..  ..|++.+
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            78999999999999999999999999999863 3688888888874                       22  5778889


Q ss_pred             CceEEEEe-CCCC
Q 021368          233 FPTILFFP-AGNK  244 (313)
Q Consensus       233 ~P~i~~~~-~g~~  244 (313)
                      +|+++++. +|..
T Consensus        98 ~P~~~l~d~~g~v  110 (116)
T cd02966          98 LPTTFLIDRDGRI  110 (116)
T ss_pred             cceEEEECCCCcE
Confidence            99999995 4443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.66  E-value=5.6e-08  Score=99.03  Aligned_cols=89  Identities=15%  Similarity=0.281  Sum_probs=71.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC---CC------------------------cc--ccc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG---TT------------------------NE--HHR  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~---~~------------------------~~--~~~  227 (313)
                      .+++++|+|||+||++|+...|.+.++.+++++. .+.+..+.+   +.                        +.  ...
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~  497 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE  497 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence            4789999999999999999999999999999764 466665632   11                        00  046


Q ss_pred             CCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          228 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       228 ~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      |++.++|+++++ ++|+.+.   ++.|....+.|.++|.+.+.
T Consensus       498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHHHH
Confidence            789999999999 6777654   68898888999999988864

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.9e-08  Score=79.20  Aligned_cols=93  Identities=19%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             CCCeEEE-cCcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC---
Q 021368          159 DGDVKIV-VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD---  231 (313)
Q Consensus       159 ~~~v~~l-~~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~---  231 (313)
                      +..++.+ +++.+++.+. +..+.|+|.||+.|.+.|..+.|.|.+++.+|... ++.||++|+.....  .+|+|+   
T Consensus       123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s~  201 (265)
T KOG0914|consen  123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLSP  201 (265)
T ss_pred             chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccCc
Confidence            4567888 5666666663 33467999999999999999999999999999765 79999999999877  677664   


Q ss_pred             ---cCceEEEEeCCCCCc-Cceeec
Q 021368          232 ---GFPTILFFPAGNKSF-DPINVD  252 (313)
Q Consensus       232 ---~~P~i~~~~~g~~~~-~~~~y~  252 (313)
                         ..||+++|.+|+++. +|..+.
T Consensus       202 ~srQLPT~ilFq~gkE~~RrP~vd~  226 (265)
T KOG0914|consen  202 GSRQLPTYILFQKGKEVSRRPDVDV  226 (265)
T ss_pred             ccccCCeEEEEccchhhhcCccccc
Confidence               679999999998864 444444

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.61  E-value=3.3e-07  Score=68.89  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=69.0

Q ss_pred             hcCCCcEEEEEeCCCCccchhhhHH-H--HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEEEeC--CCCC
Q 021368          175 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFPA--GNKS  245 (313)
Q Consensus       175 ~~~~k~~lv~fy~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~~~~--g~~~  245 (313)
                      ...+|+++|+|+++||..|+.|... |  ..+.+.+..  ++.+..+|.+..+.    ..+++.++|+++++..  |..+
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l   91 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL   91 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence            3567999999999999999998654 4  455566655  68888888876433    5789999999999954  5544


Q ss_pred             cCceeeccCcCHHHHHHHHHhcC
Q 021368          246 FDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       246 ~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .   ++.|..+.+.|...|++..
T Consensus        92 ~---~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          92 K---VWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             E---EEcCCCCHHHHHHHHHHHH
Confidence            3   7889999999998887653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.61  E-value=9.9e-08  Score=88.37  Aligned_cols=103  Identities=24%  Similarity=0.392  Sum_probs=77.6

Q ss_pred             EEEcCc-ChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCc
Q 021368          163 KIVVGN-NFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFP  234 (313)
Q Consensus       163 ~~l~~~-~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P  234 (313)
                      +.++.. .+++.+.+. .|+++|+|||+||..|+.+.+..-.-......-.++...+.|.+.++.      +++++-+.|
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P  536 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP  536 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence            445554 677766433 359999999999999999988765322222222369999999999876      589999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      ++++|+.+..  .+....|-++.+.+.+++++.
T Consensus       537 ~~~ff~~~g~--e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         537 TYLFFGPQGS--EPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             EEEEECCCCC--cCcCCcceecHHHHHHHHHHh
Confidence            9999984444  233588999999999999875

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.60  E-value=2e-07  Score=66.57  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDR  255 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~  255 (313)
                      +...+..|+++||++|..+.+.+.+++..+.   ++.+..+|.+....  .+++|.++|++++  +|..     .+.|..
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-----~~~G~~   81 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-----FGFGRM   81 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-----EEeCCC
Confidence            3446888999999999999999999997753   58889999887764  7999999999975  6654     456755


Q ss_pred             CHHHHH
Q 021368          256 TVVALY  261 (313)
Q Consensus       256 ~~~~l~  261 (313)
                      +.++++
T Consensus        82 ~~~e~~   87 (89)
T cd03026          82 TLEEIL   87 (89)
T ss_pred             CHHHHh
Confidence            655543

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.59  E-value=6.2e-06  Score=71.52  Aligned_cols=240  Identities=15%  Similarity=0.133  Sum_probs=155.9

Q ss_pred             ccCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCccccccc--CCCccEEEEEeeCCchhhhhHHHHHHHHhccCeE
Q 021368            4 KETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFE--SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKL   81 (313)
Q Consensus         4 ~~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~--~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v   81 (313)
                      ..++..+.| +|.++..-|..||.....+.|..++.+.-.+.+.  .....+|-+|.+..  ......|.++|..|...|
T Consensus       119 fkd~~~IEy-dG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~--s~~yk~FeeAAe~F~p~I  195 (383)
T PF01216_consen  119 FKDGEVIEY-DGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSED--SEHYKEFEEAAEHFQPYI  195 (383)
T ss_dssp             EETTEEEEE--S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTT--SHHHHHHHHHHHHCTTTS
T ss_pred             EECCcEEEe-cCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCC--cHHHHHHHHHHHhhcCce
Confidence            357889999 9999999999999999988898888866333222  22355666777641  125667889999999989


Q ss_pred             EEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceecc-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021368           82 IFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG  160 (313)
Q Consensus        82 ~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~-~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~  160 (313)
                      .|.++=      ++.++++++++ .  --+-|+++=...+..+ ....+.+.|.+||+++-.                 .
T Consensus       196 kFfAtf------d~~vAk~L~lK-~--nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r-----------------p  249 (383)
T PF01216_consen  196 KFFATF------DKKVAKKLGLK-L--NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR-----------------P  249 (383)
T ss_dssp             EEEEE-------SHHHHHHHT-S-T--T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S------------------
T ss_pred             eEEEEe------cchhhhhcCcc-c--cceeeeccccCCCccCCCCCCCHHHHHHHHHHhch-----------------h
Confidence            998853      45899999996 3  5666776543344444 345789999999999743                 4


Q ss_pred             CeEEEcCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-c
Q 021368          161 DVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-G  232 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~-~  232 (313)
                      .++.|+..++.+...+. +...+|.|-..--+.-..+..+++++|+....++.+.++-||-+..+.      ..|+|. .
T Consensus       250 tlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~  329 (383)
T PF01216_consen  250 TLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS  329 (383)
T ss_dssp             SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT
T ss_pred             HhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc
Confidence            57889999988877554 345666666666677789999999999999888889999999887765      345553 3


Q ss_pred             CceEEEEeCCCCCcCceeec--c---CcCHHHHHHHHHhcCCCCccc
Q 021368          233 FPTILFFPAGNKSFDPINVD--V---DRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      -|.|-+..-...  ..+-+.  +   ..+.+.|..||.+.++-++..
T Consensus       330 ~PqIGvVnvtda--dsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~  374 (383)
T PF01216_consen  330 RPQIGVVNVTDA--DSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT  374 (383)
T ss_dssp             S-EEEEEETTTS--EEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred             CCceeEEecccc--ccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence            499988876554  333333  2   347899999999998766544

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.58  E-value=3.1e-06  Score=80.58  Aligned_cols=175  Identities=14%  Similarity=0.087  Sum_probs=126.2

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ++.+.+|.+. ..|.++...+++++.--.. +.+...+.       .       ...  |++.+...+....+.|.|-..
T Consensus        20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~-i~~~~~~~-------~-------~~~--p~~~~~~~~~~~~i~f~g~P~   82 (517)
T PRK15317         20 PIELVASLDDSEKSAELKELLEEIASLSDK-ITVEEDSL-------D-------VRK--PSFSITRPGEDTGVRFAGIPM   82 (517)
T ss_pred             CEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEccC-------C-------CCC--CEEEEEcCCccceEEEEecCc
Confidence            3445566666 7899999999999876644 66543221       1       224  888888766556788999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368          130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR  208 (313)
Q Consensus       130 ~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~  208 (313)
                      -.++..||..++.-.-               .-..|+.+.. +.+..-+++ .+..|++++|++|......+.+++... 
T Consensus        83 g~Ef~s~i~~i~~~~~---------------~~~~l~~~~~-~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-  145 (517)
T PRK15317         83 GHEFTSLVLALLQVGG---------------HPPKLDQEVI-EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-  145 (517)
T ss_pred             cHHHHHHHHHHHHhcC---------------CCCCCCHHHH-HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-
Confidence            9999999988865111               1122433333 334444444 588999999999999998888888753 


Q ss_pred             CCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          209 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       209 ~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                        +++.+-.+|...++.  .+|++.++|++++  ++..     .+.|....+.|+..+.+..
T Consensus       146 --~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~~~~~~  198 (517)
T PRK15317        146 --PNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKLDTGA  198 (517)
T ss_pred             --CCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhccc
Confidence              368888889888877  7999999999977  4543     7889888888888887754

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.57  E-value=4e-07  Score=69.14  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             hcCCCcEEEEEeCCCCccchhhhHHHH---HHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEe-CCCCCc
Q 021368          175 LDESKDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFP-AGNKSF  246 (313)
Q Consensus       175 ~~~~k~~lv~fy~~~C~~C~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~-~g~~~~  246 (313)
                      ...+|+++|+|++.||++|+.|...+.   ++...++.  ++..+.++.+..+.  ...+ .++|+++|+. +|..+.
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~   94 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA   94 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence            467899999999999999999988753   45555544  56666677653322  2233 6899999994 555443

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.56  E-value=2.7e-07  Score=69.20  Aligned_cols=40  Identities=18%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEE
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM  218 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v  218 (313)
                      .+++++|+||++||++|+.+.+.+.+++..+.+  .+.+..+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v   59 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA   59 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence            478999999999999999999999999888755  3444433

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.53  E-value=5.8e-07  Score=72.28  Aligned_cols=84  Identities=10%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----------c-----ccCCC--CcCceEEEEeCCCC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------H-----HRAKS--DGFPTILFFPAGNK  244 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----------~-----~~~~v--~~~P~i~~~~~g~~  244 (313)
                      +|+||++||++|+..+|.+.++++++.    +.+..++.+...          .     ..|++  .++|+.+++....+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            888999999999999999999999974    333334433221          0     24563  69999999954443


Q ss_pred             CcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          245 SFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       245 ~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      + ....+.|..+.+.|.+.|.+.+..
T Consensus       149 i-~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        149 E-ALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             E-EEEEEECCCCHHHHHHHHHHHHhh
Confidence            2 112688999999999999888754

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.50  E-value=6.3e-07  Score=76.98  Aligned_cols=111  Identities=21%  Similarity=0.313  Sum_probs=79.8

Q ss_pred             CCeEEEcC-cChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCce
Q 021368          160 GDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT  235 (313)
Q Consensus       160 ~~v~~l~~-~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~  235 (313)
                      +.|..|+. +.|.+.+....  ..++|+||.+.+..|..|...|..||.+|..   +.|++|....... ..|....+|+
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LPt  201 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLPT  201 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-SE
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCCE
Confidence            67888864 78888875433  4689999999999999999999999999875   8999988776544 7899999999


Q ss_pred             EEEEeCCCCCcCceeec---c-CcCHHHHHHHHHhcCCCCcc
Q 021368          236 ILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~~~~  273 (313)
                      |++|++|..+...+.+.   | .++...|..||.++.-.+-+
T Consensus       202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k  243 (265)
T PF02114_consen  202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK  243 (265)
T ss_dssp             EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred             EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence            99999998765444443   2 45678999999999755443

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.47  E-value=1.4e-07  Score=66.48  Aligned_cols=64  Identities=27%  Similarity=0.572  Sum_probs=49.5

Q ss_pred             hcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEe
Q 021368          175 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFP  240 (313)
Q Consensus       175 ~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~  240 (313)
                      ...+++++|+|+++||+.|+.+...+   .++...+..  ++....+|.+.... ..+...++|+++++.
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD   81 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence            45689999999999999999998887   445554554  68999999976654 223336799999985

...

>smart00594 UAS UAS domain

Probab=98.45  E-value=1.8e-06  Score=65.68  Aligned_cols=94  Identities=16%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             ChHHHh---hcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEE
Q 021368          169 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF  238 (313)
Q Consensus       169 ~f~~~l---~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~  238 (313)
                      +|++.+   ...+|.++|+|+++||..|..+...+   .++...+..  ++.+..+|....+.    ..+++.++|++++
T Consensus        15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~   92 (122)
T smart00594       15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI   92 (122)
T ss_pred             CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence            455544   45678999999999999999987653   345555654  68888889887665    5789999999999


Q ss_pred             Ee-CCC-C-CcCceeeccCcCHHHHHHHH
Q 021368          239 FP-AGN-K-SFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       239 ~~-~g~-~-~~~~~~y~g~~~~~~l~~fi  264 (313)
                      +. .|. . ..-.-++.|..+.+.|+.++
T Consensus        93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       93 VDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            94 431 1 10112677999999998876

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.42  E-value=1.6e-05  Score=75.62  Aligned_cols=176  Identities=15%  Similarity=0.143  Sum_probs=124.6

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ++.+.+|.+. ..|+++...+++++.--. ++.+...+...             ...  |++.+...+....+.|.|-..
T Consensus        20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~-------------~~~--p~~~~~~~~~~~~i~f~g~P~   83 (515)
T TIGR03140        20 PVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT-------------LRK--PSFTILRDGADTGIRFAGIPG   83 (515)
T ss_pred             CEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc-------------CCC--CeEEEecCCcccceEEEecCC
Confidence            3445556556 789999999998887654 47664433211             223  888887665555678899999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368          130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR  208 (313)
Q Consensus       130 ~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~  208 (313)
                      -.++..|+..++.-.-.               -..|+.+..+. +..-+++ .+..|+++.|++|......+..++....
T Consensus        84 g~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p  147 (515)
T TIGR03140        84 GHEFTSLVLAILQVGGH---------------GPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP  147 (515)
T ss_pred             cHHHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence            99999999987652111               12344444443 4444444 5889999999999988888888877643


Q ss_pred             CCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          209 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       209 ~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                         ++..-.+|...++.  .+|++.++|++++  ++..     .+.|......+.+.+.+..
T Consensus       148 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~l~~~~  199 (515)
T TIGR03140       148 ---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE-----FHNGRMDLAELLEKLEETA  199 (515)
T ss_pred             ---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhhcc
Confidence               57777789888876  7899999999987  4443     6888888888887776654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.36  E-value=1.2e-06  Score=67.06  Aligned_cols=43  Identities=21%  Similarity=0.404  Sum_probs=37.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  220 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~  220 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.+..+..
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEecc
Confidence            4689999999999999999999999999999864 577776654

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.36  E-value=5.1e-07  Score=67.46  Aligned_cols=88  Identities=14%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHH---HHHhccCeEEEEEEeCCCcc-----------------cccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKGKLIFVYVQMDNED-----------------VGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~---~a~~~~~~v~f~~vd~~~~~-----------------~~~~l~~~~~v~~~  106 (313)
                      .+.+.+++|+++| +.|+.+.+.+.+   +...++..+.++.++++...                 .+.++.+.+||+++
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt   83 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT   83 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence            4567788899999 999999888885   56667666888888887532                 02468899999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                        |++++++.++.....+.|..+.++|.+++
T Consensus        84 --Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   84 --PTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             --SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             --CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence              99999975544445678999999998764

...

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.35  E-value=4.6e-06  Score=67.41  Aligned_cols=91  Identities=19%  Similarity=0.311  Sum_probs=73.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc-------------------cccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~-------------------~~~~l~~~~~v~~~  106 (313)
                      .+...+|.||++| +.|+...+.+.++++++.+. +.++.|+++...                   ....+++.||+...
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            4456788899999 99999999999999999864 888888876421                   14578899999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        |++++++.++.....+.|..+.+++.+++.+.
T Consensus       140 --P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        140 --PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             --CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence              98888876665555678999999999998764

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.35  E-value=2.9e-06  Score=71.62  Aligned_cols=88  Identities=14%  Similarity=0.050  Sum_probs=64.9

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------c--c------ccCC-------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E--H------HRAK-------------  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------~--~------~~~~-------------  229 (313)
                      .+++++|.||++||+.|...++.+.++..++++. ++.+..|+++..      .  .      .+++             
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G  176 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG  176 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence            4689999999999999999999999999999865 577877876421      0  0      1111             


Q ss_pred             ---------------------CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          230 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       230 ---------------------v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                                           +...|+.+++ ++|+.+.   +|.|..+.+.|.+.|++.+
T Consensus       177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~---~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE---RYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHh
Confidence                                 1123777777 4555554   7889888899999998875

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.33  E-value=2.2e-06  Score=57.67  Aligned_cols=55  Identities=4%  Similarity=0.021  Sum_probs=48.1

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~  113 (313)
                      +++|+++| ++|+.+.+.+++++....+ +.|..+|.++   ++++.+++|+.+.  |++++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~id~~~---~~~l~~~~~i~~v--Pti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPN-ISAEMIDAAE---FPDLADEYGVMSV--PAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCc-eEEEEEEccc---CHhHHHHcCCccc--CEEEE
Confidence            56789999 9999999999999887654 9999999988   5689999999988  99855

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.32  E-value=1.4e-06  Score=61.55  Aligned_cols=95  Identities=15%  Similarity=0.289  Sum_probs=71.4

Q ss_pred             CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC----CCCCcEE-EE
Q 021368           40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT----GEAPKVL-AY  113 (313)
Q Consensus        40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~----~~~~P~i-~~  113 (313)
                      .+|.++...... ++.+|+.. ......+.+|.++|+..+|.-++.+|||.+.+ .+.||+++.|.    .-  |.. .=
T Consensus        10 KdfKKLLRTr~N-VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~--~~~LkH   85 (112)
T cd03067          10 KDFKKLLRTRNN-VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPK--PVELKH   85 (112)
T ss_pred             HHHHHHHhhcCc-EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCC--cchhhc
Confidence            456667766544 44455555 77788888999999999999999999999866 88999999998    33  433 22


Q ss_pred             EcCCCCceeccCCCCCHHHHHHHHHH
Q 021368          114 TGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       114 ~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      |..| ..+-.|+-..+..+|..|+.+
T Consensus        86 YKdG-~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          86 YKDG-DFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             ccCC-CccccccchhhHHHHHHHhhC
Confidence            3333 345567888999999999876

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.30  E-value=2.1e-06  Score=71.06  Aligned_cols=44  Identities=16%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      .+++++|.||++||++|...++.+.++..++++. ++.+..++++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~   81 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS   81 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence            4789999999999999999999999999999864 5788888763

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.30  E-value=4.1e-06  Score=68.86  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=54.8

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEe-------------CC-------CcccccCCCCcCceE
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD-------------GT-------TNEHHRAKSDGFPTI  236 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd-------------~~-------~~~~~~~~v~~~P~i  236 (313)
                      .+++++|+||++||+.|+...|.+.++.+....  ++.++..|             .+       ......|++..+|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            578999999999999999999999998765422  34443311             00       000146788999998


Q ss_pred             EEEeCCCCCcCceeeccC-cCHHHHHHHHHh
Q 021368          237 LFFPAGNKSFDPINVDVD-RTVVALYKFLKK  266 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~  266 (313)
                      +++.....+    ++.|. ...+.+.+.++.
T Consensus       151 ~lID~~G~I----~~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       151 VLLDQDGKI----RAKGLTNTREHLESLLEA  177 (189)
T ss_pred             EEECCCCeE----EEccCCCCHHHHHHHHHH
Confidence            887543333    44553 345566666654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.29  E-value=3e-06  Score=58.62  Aligned_cols=72  Identities=13%  Similarity=0.122  Sum_probs=56.0

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTL  130 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~  130 (313)
                      .|.||++| ++|+.+.|.|++++.++...+.|..||-      ...+.++|+.+.  |++++  +|.  . .+.|. .+.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~~~v~~v--Pti~i--~G~--~-~~~G~~~~~   68 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILEAGVTAT--PGVAV--DGE--L-VIMGKIPSK   68 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHHcCCCcC--CEEEE--CCE--E-EEEeccCCH
Confidence            36799999 9999999999999999998899988882      134778999988  99977  332  2 25664 455


Q ss_pred             HHHHHHH
Q 021368          131 DKIKTFG  137 (313)
Q Consensus       131 ~~i~~fi  137 (313)
                      +.|.+++
T Consensus        69 ~~l~~~l   75 (76)
T TIGR00412        69 EEIKEIL   75 (76)
T ss_pred             HHHHHHh
Confidence            7777665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.28  E-value=6.4e-06  Score=77.05  Aligned_cols=90  Identities=17%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeC----------------------------CCcccc
Q 021368           45 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM----------------------------DNEDVG   94 (313)
Q Consensus        45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~----------------------------~~~~~~   94 (313)
                      ....+++++|.||++| ++|+...|.|.+++++++. .+.|+.|..                            +.   +
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~---~  128 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN---G  128 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc---c
Confidence            3456677888899999 9999999999999999873 365655532                            22   4


Q ss_pred             cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368           95 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus        95 ~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      ..+.+.|+|.++  |++++++.++.....+.|.++.++|..+|+.
T Consensus       129 ~~lak~fgV~gi--PTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        129 GTLAQSLNISVY--PSWAIIGKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             HHHHHHcCCCCc--CeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            578899999988  9887776655556667899999999999984

>TIGR02740 TraF-like TraF-like protein

Probab=98.26  E-value=6.2e-06  Score=71.48  Aligned_cols=92  Identities=9%  Similarity=0.009  Sum_probs=68.1

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc------ccccchhhhhCCCCCCCcEEEEEcC-CCCc
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------DVGKPVSEYFGITGEAPKVLAYTGN-DDAK  120 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~------~~~~~l~~~~~v~~~~~P~i~~~~~-~~~~  120 (313)
                      +...+|.||++| +.|+.+.|.+.+++.++.-.|..+.+|....      ..+..+++++||.+.  |++++++. ++..
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v--Ptl~Lv~~~~~~v  243 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV--PAVFLADPDPNQF  243 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC--CeEEEEECCCCEE
Confidence            346788899999 9999999999999999964444444444221      013468899999988  99999987 3333


Q ss_pred             eeccCCCCCHHHHHHHHHHHhc
Q 021368          121 KHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       121 ~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .....|..+.+.|.+.+.....
T Consensus       244 ~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       244 TPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEeCCCCHHHHHHHHHHHhc
Confidence            3334688999999999887643

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.26  E-value=4.4e-06  Score=80.06  Aligned_cols=90  Identities=6%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcc-cccchhhhhCCCCCCCcEEEEEcCCCCc--
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAK--  120 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~i~~~~~~~~~--  120 (313)
                      ++++++|.||++| .+|+.+.+..   .++.+++++ +.++.+|.++.+ .+.+++++|++.+.  |++++++.++..  
T Consensus       473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~--Pt~~~~~~~G~~i~  549 (571)
T PRK00293        473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL--PTILFFDAQGQEIP  549 (571)
T ss_pred             cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC--CEEEEECCCCCCcc
Confidence            3567888999999 9999998875   678888876 889999998642 25689999999988  999999754322  


Q ss_pred             eeccCCCCCHHHHHHHHHHH
Q 021368          121 KHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       121 ~~~~~g~~~~~~i~~fi~~~  140 (313)
                      ..++.|..+.+++.+++++.
T Consensus       550 ~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        550 DARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             cccccCCCCHHHHHHHHHHh
Confidence            35678999999999999875

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.25  E-value=3.5e-05  Score=56.99  Aligned_cols=105  Identities=23%  Similarity=0.373  Sum_probs=77.3

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHH-HHhcCCCcEEEEEEeCCCccc-------ccCCC--
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEH-------HRAKS--  230 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la-~~~~~~~~v~~~~vd~~~~~~-------~~~~v--  230 (313)
                      ....|+.-+|++.| ..-+.++|-|=...  +--.-...|.++| .......++.++.+-+.....       ++|++  
T Consensus         5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            35678999999988 45689999996543  2235567899999 555566689999998776543       57777  


Q ss_pred             CcCceEEEEeCCCCCcCceee--ccCcCHHHHHHHHHhcCCC
Q 021368          231 DGFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       231 ~~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~~  270 (313)
                      ..+|.+++|..+..  .|+.|  .|..+.+.|.+|++++.+.
T Consensus        82 e~fPv~~LF~~~~~--~pv~~p~~~~~t~~~l~~fvk~~t~~  121 (126)
T PF07912_consen   82 EDFPVIYLFVGDKE--EPVRYPFDGDVTADNLQRFVKSNTGL  121 (126)
T ss_dssp             CC-SEEEEEESSTT--SEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred             ccCCEEEEecCCCC--CCccCCccCCccHHHHHHHHHhCCCe
Confidence            57899999995555  78999  8899999999999999763

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.19  E-value=2.5e-06  Score=64.32  Aligned_cols=95  Identities=16%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC-Cce-
Q 021368           45 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKK-  121 (313)
Q Consensus        45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~-  121 (313)
                      ....+++++|.|+++| ++|+.+.|.+.+.+........|+.||.+...  ..+...|++.+-..|++++++.++ ..+ 
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCCCchh
Confidence            3455668888999999 99999999999987755444456666666532  234578888862249999997443 221 


Q ss_pred             -eccCCCCCHHHHHHHHHHHh
Q 021368          122 -HILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       122 -~~~~g~~~~~~i~~fi~~~~  141 (313)
                       +...|..+.+.+..++....
T Consensus        93 ~~~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          93 IINKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             hccCCCCccccccCCCHHHHH
Confidence             23345566665555555543

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PHA02125 thioredoxin-like protein

Probab=98.16  E-value=8.2e-06  Score=56.28  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=42.3

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      +++|+++| ++|+.+.|.|.+++      +.++.||++.   +++++++|+|.++  |+++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~---~~~l~~~~~v~~~--PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE---GVELTAKHHIRSL--PTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC---CHHHHHHcCCcee--CeEE
Confidence            67899999 99999999998764      4578888877   6699999999999  9986

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.16  E-value=1.6e-05  Score=64.28  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------cc-------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------EH-------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------~~-------------------------  225 (313)
                      .+++++|+||++||+.|...++.+.++..++++. ++.+..+.++..      ..                         
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            5789999999999999999999999999999753 577777776541      00                         


Q ss_pred             ccCCCCcCceEEEEeCCCCCcCceeecc-----------CcCHHHHHHHHHhcCC
Q 021368          226 HRAKSDGFPTILFFPAGNKSFDPINVDV-----------DRTVVALYKFLKKNAS  269 (313)
Q Consensus       226 ~~~~v~~~P~i~~~~~g~~~~~~~~y~g-----------~~~~~~l~~fi~~~~~  269 (313)
                      ..|++...|+++++..+.++    .|.+           ..+...+..-|+..+.
T Consensus       103 ~~~~v~~~P~~~lid~~G~v----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  153 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGKL----VYRGRIDDSRPGNDPPVTGRDLRAALDALLA  153 (171)
T ss_pred             HHcCCCcCCcEEEECCCCeE----EEeecccCCcccccccccHHHHHHHHHHHHc
Confidence            24578889999999644443    3332           2355667777776653

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PLN02412 probable glutathione peroxidase

Probab=98.15  E-value=1.6e-05  Score=64.03  Aligned_cols=89  Identities=15%  Similarity=0.085  Sum_probs=63.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-------cc-c------ccCC-------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------NE-H------HRAK-------------  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~~-~------~~~~-------------  229 (313)
                      .+++++|+||++||+.|...++.+.++..++++. ++.+..++++.       .. .      .+++             
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g  106 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG  106 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence            4689999999999999999999999999999875 57777777632       10 0      1111             


Q ss_pred             ---------------------CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          230 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       230 ---------------------v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                                           +...|+.+++ ++|+.+.   .+.|..+.+.|.+.|++.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~---~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ---RYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence                                 1223666666 4444443   67788888888888887754

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.3e-05  Score=67.09  Aligned_cols=120  Identities=15%  Similarity=0.306  Sum_probs=92.4

Q ss_pred             CCCeEEEcCcChHHHhhcCCCc--EEEEEeC----CCCccchhhhHHHHHHHHHhcCC------CcEEEEEEeCCCccc-
Q 021368          159 DGDVKIVVGNNFDEIVLDESKD--VLLEIYA----PWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH-  225 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~--~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~-  225 (313)
                      +..|..++++.|..++....++  .+++|.|    ..|.-|.+...++..+|..++..      .++-|+.||.++.+. 
T Consensus        39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~  118 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV  118 (331)
T ss_pred             CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence            4679999999999999755554  5677776    46999999999999999987643      158899999998776 


Q ss_pred             -ccCCCCcCceEEEEe-CCCCCcCceeecc---CcCHHHHHHHHHhcCCCCcc-ccCCC
Q 021368          226 -HRAKSDGFPTILFFP-AGNKSFDPINVDV---DRTVVALYKFLKKNASIPFK-IQKPT  278 (313)
Q Consensus       226 -~~~~v~~~P~i~~~~-~g~~~~~~~~y~g---~~~~~~l~~fi~~~~~~~~~-~~~~~  278 (313)
                       +.+++.+.|++++|+ +.....++..+.+   ...++++.+|+.+....... +.+|+
T Consensus       119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp  177 (331)
T KOG2603|consen  119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPP  177 (331)
T ss_pred             HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeeeeecCC
Confidence             899999999999993 3222224445553   44689999999999887765 55554

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.14  E-value=5.9e-06  Score=64.86  Aligned_cols=68  Identities=19%  Similarity=0.454  Sum_probs=50.8

Q ss_pred             CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCC-
Q 021368          177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD-  231 (313)
Q Consensus       177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v~-  231 (313)
                      .+++++|.||++ ||++|...++.+.++.+.++.. ++.+..+..+.+..                       ..+++. 
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  105 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI  105 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence            578999999999 9999999999999999887764 35555554443211                       345777 


Q ss_pred             --------cCceEEEEeCCCCC
Q 021368          232 --------GFPTILFFPAGNKS  245 (313)
Q Consensus       232 --------~~P~i~~~~~g~~~  245 (313)
                              .+|+++++.....+
T Consensus       106 ~~~~~~~~~~P~~~lId~~G~V  127 (146)
T PF08534_consen  106 MEDPGNGFGIPTTFLIDKDGKV  127 (146)
T ss_dssp             ECCTTTTSSSSEEEEEETTSBE
T ss_pred             ccccccCCeecEEEEEECCCEE
Confidence                    89999888655444

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.09  E-value=1.9e-05  Score=59.96  Aligned_cols=83  Identities=10%  Similarity=0.087  Sum_probs=61.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC-Cc-----------------ccccchhhhhCCCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NE-----------------DVGKPVSEYFGITGEAP  108 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~-~~-----------------~~~~~l~~~~~v~~~~~  108 (313)
                      .+...+|.||++| +.|..+.|.+..+++++.- +.+. +|.. .+                 +.+..+++.|+|.+.  
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~-i~i~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~--   94 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPV-VSVA-LRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT--   94 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCCE-EEEE-ccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc--
Confidence            4457888899999 9999999999999988431 2222 2211 00                 114579999999988  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHH
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKT  135 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~  135 (313)
                      |++++++.++ ..+.+.|..+.+.|.+
T Consensus        95 P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          95 PAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            9999998776 6777788888888864

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.09  E-value=1.3e-05  Score=59.46  Aligned_cols=66  Identities=29%  Similarity=0.626  Sum_probs=55.4

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCC--CCcCceEEEEeCCCCC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAK--SDGFPTILFFPAGNKS  245 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~--v~~~P~i~~~~~g~~~  245 (313)
                      ++++++.||++||++|+.+.+.+..++..+..  .+.+..+|.. ....  ..++  +..+|++.++.++...
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  102 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV  102 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence            67889999999999999999999999999986  5788888886 3333  5777  8899999988887654

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.09  E-value=1.9e-05  Score=62.62  Aligned_cols=43  Identities=16%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  220 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~  220 (313)
                      .+|+++|.||++||++|...++.+.++..++++. ++.+..+++
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence            4688999999999999999999999999999864 578887875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.05  E-value=2e-05  Score=60.25  Aligned_cols=81  Identities=16%  Similarity=0.087  Sum_probs=59.1

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------ccccchhhhhCCCCCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGEA  107 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~~  107 (313)
                      +...+|+||+.| +.|....|.+.++++++.  +.|+.|+.++.                    +.+..+++.|++.+. 
T Consensus        25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~-  101 (127)
T cd03010          25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV-  101 (127)
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC-
Confidence            457788899999 999999999999998873  66666653210                    014577888999988 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHH
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKI  133 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i  133 (313)
                       |+.++++.++.....+.|.++.+.|
T Consensus       102 -P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 -PETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             -CeEEEECCCceEEEEEeccCChHhc
Confidence             9766776555456667788877654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.04  E-value=3e-05  Score=57.45  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCCc--------------------ccccchhhhhCCCCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  106 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~  106 (313)
                      +...+++||+.| +.|+...+.+.++..++. ..+.|+.|+++..                    +....+.+.||+.+.
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL   98 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence            457788899999 999999999999999996 3499999999873                    002578899999987


Q ss_pred             CCcEEEEEcCCCCceeccC
Q 021368          107 APKVLAYTGNDDAKKHILD  125 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~  125 (313)
                        |.+++++.++...+.+.
T Consensus        99 --P~~~l~d~~g~v~~~~~  115 (116)
T cd02966          99 --PTTFLIDRDGRIRARHV  115 (116)
T ss_pred             --ceEEEECCCCcEEEEec
Confidence              98888876554444443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.03  E-value=1.6e-05  Score=60.31  Aligned_cols=76  Identities=14%  Similarity=0.058  Sum_probs=57.2

Q ss_pred             CCcccccccCCCccEEEEEeeC-CchhhhhH-HHH--HHHHhccCeEEEEEEeCCCcccccchhh--------hhCCCCC
Q 021368           39 RENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VFE--EAAKSFKGKLIFVYVQMDNEDVGKPVSE--------YFGITGE  106 (313)
Q Consensus        39 ~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~-~~~--~~a~~~~~~v~f~~vd~~~~~~~~~l~~--------~~~v~~~  106 (313)
                      ++.+....+++++.+|.|+++| +.|+.+.+ +|.  +++..+...+.++.+|.++   ++.+.+        .||+.++
T Consensus         5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~---~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE---RPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc---CcHHHHHHHHHHHHhcCCCCC
Confidence            3445555667778889999999 99999976 343  5777777668999999877   445554        3588888


Q ss_pred             CCcEEEEEcCCCC
Q 021368          107 APKVLAYTGNDDA  119 (313)
Q Consensus       107 ~~P~i~~~~~~~~  119 (313)
                        |++++++.++.
T Consensus        82 --Pt~vfl~~~G~   92 (124)
T cd02955          82 --PLNVFLTPDLK   92 (124)
T ss_pred             --CEEEEECCCCC
Confidence              99999987653

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.03  E-value=5.4e-05  Score=59.75  Aligned_cols=89  Identities=11%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc---------cccchh-hhh---CCCCCCCcEEEE
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---------VGKPVS-EYF---GITGEAPKVLAY  113 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~---------~~~~l~-~~~---~v~~~~~P~i~~  113 (313)
                      .....+|.||++| ++|++..|.+.++++++.  +.|..|+.+...         ...... ..+   ++.+.  |+.++
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i--PTt~L  124 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT--PATFL  124 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC--CeEEE
Confidence            3445688899999 999999999999999985  444444544311         001233 345   78777  99888


Q ss_pred             EcCCCCc-eeccCCCCCHHHHHHHHHHH
Q 021368          114 TGNDDAK-KHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       114 ~~~~~~~-~~~~~g~~~~~~i~~fi~~~  140 (313)
                      ++.++.. .....|..+.+.+.+.+.+.
T Consensus       125 ID~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       125 VNVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             EeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence            8776443 33568999999998888765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.03  E-value=1.2e-05  Score=54.78  Aligned_cols=67  Identities=16%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEEEeCCCCCcCceeeccCc
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR  255 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~  255 (313)
                      +.+|+++||++|+.+.+.+.+.        ++.+..+|++.+..      ..+++.++|++++.  |.      .+.| .
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~------~~~g-~   64 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK------IIVG-F   64 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE------EEee-C
Confidence            5689999999999998877652        47778888877643      34788999999884  32      3555 5


Q ss_pred             CHHHHHHHHH
Q 021368          256 TVVALYKFLK  265 (313)
Q Consensus       256 ~~~~l~~fi~  265 (313)
                      +.+.|.+||+
T Consensus        65 ~~~~i~~~i~   74 (74)
T TIGR02196        65 DPEKLDQLLE   74 (74)
T ss_pred             CHHHHHHHhC
Confidence            7788888874

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.02  E-value=2e-05  Score=51.51  Aligned_cols=58  Identities=33%  Similarity=0.686  Sum_probs=47.9

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAG  242 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g  242 (313)
                      +++||++||+.|..+.+.+.++ .....  ++.+..++++....     ..+++..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 32222  68999999888775     26688999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.01  E-value=3.8e-05  Score=54.77  Aligned_cols=71  Identities=14%  Similarity=0.076  Sum_probs=56.1

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL  130 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~  130 (313)
                      .+.+|+++| +.|....+.+.+++..+.+ +.+..+|.++   .++++.+|||.+.  |++++ + |.   ..+.|..+.
T Consensus        15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~---~~e~a~~~~V~~v--Pt~vi-d-G~---~~~~G~~~~   83 (89)
T cd03026          15 NFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGAL---FQDEVEERGIMSV--PAIFL-N-GE---LFGFGRMTL   83 (89)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHh---CHHHHHHcCCccC--CEEEE-C-CE---EEEeCCCCH
Confidence            355678888 9999999999999988865 9999999988   5689999999998  99954 3 32   233576665


Q ss_pred             HHH
Q 021368          131 DKI  133 (313)
Q Consensus       131 ~~i  133 (313)
                      +++
T Consensus        84 ~e~   86 (89)
T cd03026          84 EEI   86 (89)
T ss_pred             HHH
Confidence            554

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.01  E-value=2.7e-05  Score=53.77  Aligned_cols=71  Identities=17%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEeCCCCCcCceeecc-CcCHHHHH
Q 021368          184 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALY  261 (313)
Q Consensus       184 ~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~  261 (313)
                      .+++++|+.|..+...+.+++..+.    +.+-.+|...... .+|++.++|++++  +|..     .|.| ..+.+.|.
T Consensus         4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~-----~~~G~~p~~~el~   72 (76)
T PF13192_consen    4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKV-----VFVGRVPSKEELK   72 (76)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEE-----EEESS--HHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEE-----EEEecCCCHHHHH
Confidence            3478889999999999999988873    4445556544333 7899999999977  5553     7999 78899999


Q ss_pred             HHHH
Q 021368          262 KFLK  265 (313)
Q Consensus       262 ~fi~  265 (313)
                      +||.
T Consensus        73 ~~l~   76 (76)
T PF13192_consen   73 ELLE   76 (76)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9884

...

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.99  E-value=5.8e-05  Score=56.56  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=73.5

Q ss_pred             cCCCccEEEEEeeC-CchhhhhH-HH--HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC-CCCce
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN-DDAKK  121 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~-~~--~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~-~~~~~  121 (313)
                      +.++..+|+|+++| ..|+.+.. .|  .++.+.++....+..+|.++.+ ...++..|++.++  |++++++. ++...
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~--P~~~~i~~~~g~~l   91 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY--PHIAIIDPRTGEVL   91 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC--CeEEEEeCccCcEe
Confidence            45667788899999 89999866 45  3466777767888888887644 7789999999988  99999987 45455


Q ss_pred             eccCCCCCHHHHHHHHHHHhc
Q 021368          122 HILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       122 ~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ..+.|..+.+.+...+.+...
T Consensus        92 ~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          92 KVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             EEEcCCCCHHHHHHHHHHHHh
Confidence            667899999999988887653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.97  E-value=0.00014  Score=53.76  Aligned_cols=108  Identities=14%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHH-Hhcc--CeEEEEEEeCCCc--ccccchhhhhCCCCCC
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAA-KSFK--GKLIFVYVQMDNE--DVGKPVSEYFGITGEA  107 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a-~~~~--~~v~f~~vd~~~~--~~~~~l~~~~~v~~~~  107 (313)
                      -...|+.-+|++++.+....+|.|=... +.-.-...|.++| +...  ..+.++.|-..++  ..|.+|.++|+|..-.
T Consensus         5 G~v~LD~~tFdKvi~kf~~~LVKFD~ay-PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~   83 (126)
T PF07912_consen    5 GCVPLDELTFDKVIPKFKYVLVKFDVAY-PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED   83 (126)
T ss_dssp             TSEEESTTHHHHHGGGSSEEEEEEEESS---CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred             ceeeccceehhheeccCceEEEEEeccC-CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence            3568899999999988766666664443 3334455666667 3332  3588888887664  2489999999997655


Q ss_pred             CcEEEEEcCCCCceecc--CCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHIL--DGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~--~g~~~~~~i~~fi~~~~  141 (313)
                      .|.+.+|.++...+..|  .|+.+.++|+.|+....
T Consensus        84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t  119 (126)
T PF07912_consen   84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT  119 (126)
T ss_dssp             -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred             CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence            69999998777777777  89999999999998863

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=9.6e-06  Score=65.67  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             ceEEeC-CCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCC-
Q 021368           33 LVTIFT-RENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGE-  106 (313)
Q Consensus        33 ~v~~lt-~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~-  106 (313)
                      .+..++ .+.++....  +...|+|.||+.| +.|.+..|.|.+++.+|.. .++||+||...   .++...+|+|... 
T Consensus       125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr---fpd~a~kfris~s~  201 (265)
T KOG0914|consen  125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR---FPDVAAKFRISLSP  201 (265)
T ss_pred             heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc---CcChHHheeeccCc
Confidence            445553 333333332  3346788899999 9999999999999999996 59999999998   5699999999755 


Q ss_pred             ---CCcEEEEEcCCC
Q 021368          107 ---APKVLAYTGNDD  118 (313)
Q Consensus       107 ---~~P~i~~~~~~~  118 (313)
                         .+||+.+|.+|.
T Consensus       202 ~srQLPT~ilFq~gk  216 (265)
T KOG0914|consen  202 GSRQLPTYILFQKGK  216 (265)
T ss_pred             ccccCCeEEEEccch
Confidence               378998998776

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.94  E-value=5.9e-05  Score=54.63  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             hHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCce
Q 021368          170 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPI  249 (313)
Q Consensus       170 f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~  249 (313)
                      +.++ ....+.++|-|+.++|+   .....|.++|..++.  .+.|+.+.- ......+.+ ..|++++|+....  .++
T Consensus        10 l~~~-~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~~-~~~~~~~~~-~~~~i~l~~~~~~--~~~   79 (97)
T cd02981          10 LEKF-LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTSD-KEVAKKLKV-KPGSVVLFKPFEE--EPV   79 (97)
T ss_pred             HHHH-hccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEECh-HHHHHHcCC-CCCceEEeCCccc--CCc
Confidence            3443 45678888889988876   677889999999987  578877662 222244555 4589999976533  455


Q ss_pred             eeccCcCHHHHHHHHHhc
Q 021368          250 NVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       250 ~y~g~~~~~~l~~fi~~~  267 (313)
                      .|.|..+.+.|.+||..+
T Consensus        80 ~y~g~~~~~~l~~fi~~~   97 (97)
T cd02981          80 EYDGEFTEESLVEFIKDN   97 (97)
T ss_pred             cCCCCCCHHHHHHHHHhC
Confidence            899988899999999754

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.94  E-value=3.5e-05  Score=62.38  Aligned_cols=83  Identities=6%  Similarity=0.003  Sum_probs=52.9

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHH-hcCCCcEEEEEEeCCC-------------------------------cc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTT-------------------------------NE  224 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~-~~~~~~v~~~~vd~~~-------------------------------~~  224 (313)
                      .+|+++|.|||+||++|+.-+|.+.+++.+ +.-...-...-||.+.                               ..
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v  137 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV  137 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence            389999999999999999999999999653 2110000002222221                               11


Q ss_pred             cccCCCCcCceE-EEE-eCCCCCcCceeeccCcCHHHHHH
Q 021368          225 HHRAKSDGFPTI-LFF-PAGNKSFDPINVDVDRTVVALYK  262 (313)
Q Consensus       225 ~~~~~v~~~P~i-~~~-~~g~~~~~~~~y~g~~~~~~l~~  262 (313)
                      ...+++.+.|+. +++ ++|.-+.   .+.|..+.+.+.+
T Consensus       138 ~~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l~~ee~e~  174 (184)
T TIGR01626       138 KNAWQLNSEDSAIIVLDKTGKVKF---VKEGALSDSDIQT  174 (184)
T ss_pred             HHhcCCCCCCceEEEECCCCcEEE---EEeCCCCHHHHHH
Confidence            136688899776 666 4555443   7778777665544

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.93  E-value=5.7e-05  Score=61.12  Aligned_cols=90  Identities=18%  Similarity=0.086  Sum_probs=66.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------ccccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~  106 (313)
                      .+...+|.||++| ++|++..|.+.+++++  + +.++.|+.++.                    +.+..+.+.|++.+.
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~  138 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA  138 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence            4557888899999 9999999999998764  2 55555553221                    013466778899887


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+.++++.++...+.+.|..+.+.+.+++.+++.
T Consensus       139 --P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       139 --PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             --CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence              8766776655556777899999999999998874

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.91  E-value=5e-05  Score=63.52  Aligned_cols=84  Identities=18%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC---------cc--cccCCCCcCceEEEEeCCCCCc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT---------NE--HHRAKSDGFPTILFFPAGNKSF  246 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------~~--~~~~~v~~~P~i~~~~~g~~~~  246 (313)
                      ++.-|++||.+.|+.|..+.|++..++.++.=  .+..+.+|...         +.  .+++++..+|++++...+... 
T Consensus       120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~-  196 (215)
T PF13728_consen  120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK-  196 (215)
T ss_pred             hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe-
Confidence            56779999999999999999999999999842  34444444221         11  157899999999999665532 


Q ss_pred             CceeeccCcCHHHHHHHH
Q 021368          247 DPINVDVDRTVVALYKFL  264 (313)
Q Consensus       247 ~~~~y~g~~~~~~l~~fi  264 (313)
                      -...-.|..+.+.|.+-|
T Consensus       197 ~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             EEEEeeecCCHHHHHHhh
Confidence            122445778888877644

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.91  E-value=8.6e-05  Score=60.78  Aligned_cols=90  Identities=10%  Similarity=0.045  Sum_probs=67.1

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------------------cccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------------------~~~~l~~~~~v~~~  106 (313)
                      .++..+|.||+.| ++|++..|.+.+++.+  + +.|+.|+.++..                    ....+...||+.+.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~  143 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  143 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence            4556788899999 9999999999998753  3 666677643321                    01234567899888


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+.++++.++...+.+.|..+.+.+...+...+.
T Consensus       144 --P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        144 --PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             --CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence              8777777665566777899999999999988875

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.86  E-value=3.9e-05  Score=52.89  Aligned_cols=54  Identities=26%  Similarity=0.440  Sum_probs=38.7

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-----CCCCcCceEEEEeCCCC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNK  244 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-----~~v~~~P~i~~~~~g~~  244 (313)
                      ++.||++||++|+.+.+.+.+++        +.+-.+|++.+..  ..     ++..++|++ ++.+|..
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~   62 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF   62 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence            67899999999999999887663        3344577765544  22     378899997 4666643

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.85  E-value=4.5e-05  Score=54.99  Aligned_cols=66  Identities=26%  Similarity=0.413  Sum_probs=50.3

Q ss_pred             CccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcc----------------------cccchhhhhCCC
Q 021368           50 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED----------------------VGKPVSEYFGIT  104 (313)
Q Consensus        50 ~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~----------------------~~~~l~~~~~v~  104 (313)
                      +..+++|++.| ++|....|.+.++.++++  +.+.|+.|.+++..                      ....+.+.|+|.
T Consensus         2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~   81 (95)
T PF13905_consen    2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN   81 (95)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence            46788899999 899999999999999999  56999999887642                      124466777888


Q ss_pred             CCCCcEEEEEcCC
Q 021368          105 GEAPKVLAYTGND  117 (313)
Q Consensus       105 ~~~~P~i~~~~~~  117 (313)
                      +.  |++++++.+
T Consensus        82 ~i--P~~~lld~~   92 (95)
T PF13905_consen   82 GI--PTLVLLDPD   92 (95)
T ss_dssp             SS--SEEEEEETT
T ss_pred             cC--CEEEEECCC
Confidence            77  888777654

...

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.82  E-value=6.9e-05  Score=56.10  Aligned_cols=66  Identities=23%  Similarity=0.432  Sum_probs=44.3

Q ss_pred             cCCCcEEEEEeC-------CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c---ccCCCCcCceEE
Q 021368          176 DESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H---HRAKSDGFPTIL  237 (313)
Q Consensus       176 ~~~k~~lv~fy~-------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~---~~~~v~~~P~i~  237 (313)
                      +++++++|+|++       +||+.|....|.+.+.-.....  +..++.+.+..-.        .   +.++++++||++
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi   94 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI   94 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence            345788999985       5999999999999998877554  5677666664422        1   258999999999


Q ss_pred             EEeCCC
Q 021368          238 FFPAGN  243 (313)
Q Consensus       238 ~~~~g~  243 (313)
                      -|..+.
T Consensus        95 ~~~~~~  100 (119)
T PF06110_consen   95 RWETGE  100 (119)
T ss_dssp             ECTSS-
T ss_pred             EECCCC
Confidence            997763

; PDB: 1V9W_A 1WOU_A.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.82  E-value=6.7e-05  Score=57.67  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcc---------------------cccchhhhhC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED---------------------VGKPVSEYFG  102 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~---------------------~~~~l~~~~~  102 (313)
                      .++..+|.||++| +.|+...|.+.++..++.+   .+.++.|+.+...                     ....+++.||
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            3457788899999 9999999999999988864   3666666665421                     0246778999


Q ss_pred             CCCCCCcEEEEEcCCC
Q 021368          103 ITGEAPKVLAYTGNDD  118 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~  118 (313)
                      |.++  |++++++.++
T Consensus        97 v~~~--P~~~lid~~G  110 (131)
T cd03009          97 IEGI--PTLIILDADG  110 (131)
T ss_pred             CCCC--CEEEEECCCC
Confidence            9988  9998997554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.80  E-value=0.00013  Score=59.53  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=35.4

Q ss_pred             CCCcE-EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      .++++ ++++|++||++|...+|.+.++.+++++. ++.+..++++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~   83 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN   83 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence            35654 55679999999999999999999999764 5777777753

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.79  E-value=4.8e-05  Score=60.18  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=37.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      .+++++|+||++||+ |...++.+.++..++++. ++.+..++++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence            378999999999999 999999999999999764 5778777654

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.75  E-value=0.00018  Score=61.39  Aligned_cols=87  Identities=16%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------ccCCCCcCceEEEEeCCCCCc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF  246 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------~~~~v~~~P~i~~~~~g~~~~  246 (313)
                      ++.-+++||.+.|+.|.++.|++..++.++.=  .+..+.+|....+.           ++++++.+|++++...+....
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~  227 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM  227 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence            45789999999999999999999999999853  34555555442211           477899999999986654431


Q ss_pred             CceeeccCcCHHHHHHHHHhc
Q 021368          247 DPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       247 ~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      .|+ -.|..+.++|.+-|...
T Consensus       228 ~pv-~~G~iS~deL~~Ri~~v  247 (256)
T TIGR02739       228 SPL-AYGFISQDELKERILNV  247 (256)
T ss_pred             EEE-eeccCCHHHHHHHHHHH
Confidence            333 33678888887766544

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.75  E-value=0.00024  Score=57.29  Aligned_cols=86  Identities=10%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------c--ccchhhhhCC--CCCCCcEEEEEcCCCC
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------V--GKPVSEYFGI--TGEAPKVLAYTGNDDA  119 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------~--~~~l~~~~~v--~~~~~P~i~~~~~~~~  119 (313)
                      +|.||+.| ++|++..|.+.++++++.  +.+..|+.+...        +  ...+...||+  .++  |+.++++.+..
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i--PttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT--PTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC--CeEEEEeCCCc
Confidence            77899999 999999999999999985  455555554320        0  1225567885  466  88888877654


Q ss_pred             cee-ccCCCCCHHHHHHHHHHHhc
Q 021368          120 KKH-ILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       120 ~~~-~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ..+ .+.|.++.+.+.+-+.+.+.
T Consensus       149 i~~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        149 EALPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHh
Confidence            433 57899999999999888875

>smart00594 UAS UAS domain

Probab=97.69  E-value=0.00018  Score=54.60  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=67.8

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHH-HH--HHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCC---
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPV-FE--EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA---  119 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~-~~--~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~---  119 (313)
                      +.++..+|+|+++| ..|..+... |.  ++.+.++..+.+..+|.+..+ +..++..|+++++  |+++++....+   
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~--P~~~~l~~~~g~~~  101 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSF--PYVAIVDPRTGQRV  101 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCC--CEEEEEecCCCcee
Confidence            45567888999999 999988663 33  355666667888888988766 7899999999998  99999876542   


Q ss_pred             --ceeccCCCCCHHHHHHHH
Q 021368          120 --KKHILDGELTLDKIKTFG  137 (313)
Q Consensus       120 --~~~~~~g~~~~~~i~~fi  137 (313)
                        ....+.|..+.+++..++
T Consensus       102 ~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      102 IEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEEeccccCCCCHHHHHHhh
Confidence              133468999999998775

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.69  E-value=0.00019  Score=50.66  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=54.9

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-----c-c--cCCCCcCceEEEEeCCCCCcCceeec
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-H--RAKSDGFPTILFFPAGNKSFDPINVD  252 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----~-~--~~~v~~~P~i~~~~~g~~~~~~~~y~  252 (313)
                      .++.|+.+||+.|..+...+.++...+.   ++.+..+|++.+.     . .  ..+..++|++++  +|..+       
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i-------   69 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI-------   69 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE-------
Confidence            4788999999999999999999987653   4677778877652     1 1  223578999875  55543       


Q ss_pred             cCcCHHHHHHHHHhcCC
Q 021368          253 VDRTVVALYKFLKKNAS  269 (313)
Q Consensus       253 g~~~~~~l~~fi~~~~~  269 (313)
                        ...++|.++++.+++
T Consensus        70 --gg~~~~~~~~~~~~~   84 (85)
T PRK11200         70 --GGCTDFEAYVKENLG   84 (85)
T ss_pred             --cCHHHHHHHHHHhcc
Confidence              245788898888865

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.68  E-value=0.00018  Score=61.98  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=69.4

Q ss_pred             CCceEEeCC-CcccccccC---CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIFTR-ENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~lt~-~~~~~~~~~---~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ...|.+++. +.|...+..   ...++|.||.+. ..|..+...|..||.+|.. ++|+.|.....    .++..|.+..
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~----~~~~~f~~~~  198 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC----PASENFPDKN  198 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC----CTTTTS-TTC
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc----CcccCCcccC
Confidence            457778864 566665533   223556689998 9999999999999999999 99999998752    3678899987


Q ss_pred             CCCcEEEEEcCCCCc--eec---c-CCCCCHHHHHHHHHHH
Q 021368          106 EAPKVLAYTGNDDAK--KHI---L-DGELTLDKIKTFGEDF  140 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~--~~~---~-~g~~~~~~i~~fi~~~  140 (313)
                      .  |+|++|++|...  -..   . ....+..+|..|+.++
T Consensus       199 L--PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  199 L--PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             ---SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             C--CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            7  999999987622  111   1 2357889999999886

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.67  E-value=2.4e-05  Score=64.25  Aligned_cols=99  Identities=15%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      .+..++.+|+..+.+.  .|+++|+++| +.|..+.++|...|.--.+ .|.+++||.+.   |+.|--+|-+.+.  |+
T Consensus        25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~---npgLsGRF~vtaL--pt   97 (248)
T KOG0913|consen   25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT---NPGLSGRFLVTAL--PT   97 (248)
T ss_pred             eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe---ccccceeeEEEec--ce
Confidence            7889999999988765  7999999999 9999999999999887666 49999999998   7799999999877  88


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      |.=...|.  -..|.|.++..++..|+..-
T Consensus        98 IYHvkDGe--FrrysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen   98 IYHVKDGE--FRRYSGARDKNDFISFEEHR  125 (248)
T ss_pred             EEEeeccc--cccccCcccchhHHHHHHhh
Confidence            75554444  34679999999999999874

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.67  E-value=0.00042  Score=51.60  Aligned_cols=102  Identities=16%  Similarity=0.132  Sum_probs=75.3

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHH---hcCCCcEEEEEEeCCCccc--ccCCCCc--Cc
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH---LRGVDSIVIAKMDGTTNEH--HRAKSDG--FP  234 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~---~~~~~~v~~~~vd~~~~~~--~~~~v~~--~P  234 (313)
                      |++++.++...+. ..+.+..++|+++  ..-..+...+.++|+.   +++  .+.|+.+|.+....  +.|+++.  +|
T Consensus         1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P   75 (111)
T cd03072           1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP   75 (111)
T ss_pred             CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence            4567888888765 4555655556533  2346788899999999   887  69999999998754  7888876  89


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      .+.+....... +...+.+..+.+.|.+|+.+.+.
T Consensus        76 ~i~i~~~~~~~-Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          76 VIAIDSFRHMY-LFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEEEcchhcC-cCCCCccccCHHHHHHHHHHHhc
Confidence            99998664422 11116678899999999998764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.66  E-value=0.00024  Score=72.92  Aligned_cols=93  Identities=19%  Similarity=0.169  Sum_probs=72.0

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC---Cc---------------------ccccchhhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD---NE---------------------DVGKPVSEYF  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~---~~---------------------~~~~~l~~~~  101 (313)
                      .++.++|.||+.| ++|+...|.|.+++++|+++ +.|+.|.+.   ++                     +....+.+.|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            3557788899999 99999999999999999875 777766431   10                     0134677889


Q ss_pred             CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          102 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +|.+.  |++++++.++.....+.|....+.+.+++...+.
T Consensus       499 ~V~~i--Pt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        499 GVSSW--PTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             CCCcc--ceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            99988  9999997655455567888899999999988753

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=97.65  E-value=0.00021  Score=54.97  Aligned_cols=69  Identities=17%  Similarity=0.205  Sum_probs=52.0

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcc----------------------cccchhhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED----------------------VGKPVSEYF  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~----------------------~~~~l~~~~  101 (313)
                      .++..+|.|+++| ++|+...|.+.+++.++.+   .+.++.|+.+...                      ....+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            3457788899999 9999999999999998875   3677777765421                      012455679


Q ss_pred             CCCCCCCcEEEEEcCCC
Q 021368          102 GITGEAPKVLAYTGNDD  118 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~  118 (313)
                      +|.++  |++++++.++
T Consensus        96 ~v~~i--Pt~~lid~~G  110 (132)
T cd02964          96 KVEGI--PTLVVLKPDG  110 (132)
T ss_pred             CCCCC--CEEEEECCCC
Confidence            99988  9998887553

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.64  E-value=0.0002  Score=54.27  Aligned_cols=68  Identities=22%  Similarity=0.462  Sum_probs=52.4

Q ss_pred             CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCC-
Q 021368          177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD-  231 (313)
Q Consensus       177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v~-  231 (313)
                      .+++++|.||+. ||+.|....+.+.++..+++.. ++.+..+..+....                       ..|++. 
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  102 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED  102 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence            468999999999 9999999999999999999864 58888777765331                       234555 


Q ss_pred             -----cCceEEEEeCCCCC
Q 021368          232 -----GFPTILFFPAGNKS  245 (313)
Q Consensus       232 -----~~P~i~~~~~g~~~  245 (313)
                           .+|+++++..+..+
T Consensus       103 ~~~~~~~p~~~lid~~g~I  121 (124)
T PF00578_consen  103 EKDTLALPAVFLIDPDGKI  121 (124)
T ss_dssp             TTTSEESEEEEEEETTSBE
T ss_pred             ccCCceEeEEEEECCCCEE
Confidence                 77888888665543

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.00047  Score=50.62  Aligned_cols=72  Identities=21%  Similarity=0.425  Sum_probs=52.7

Q ss_pred             cChHHHhh--cCCCcEEEEEeC--------CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------ccC
Q 021368          168 NNFDEIVL--DESKDVLLEIYA--------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRA  228 (313)
Q Consensus       168 ~~f~~~l~--~~~k~~lv~fy~--------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------~~~  228 (313)
                      ++|.+.+.  .+++.++|+|++        +||+.|.+..|.+.+.-+....  ++.|+.+++..-+.         ...
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~   90 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP   90 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence            34555553  234558899985        6999999999999998875555  78899998876443         223


Q ss_pred             CC-CcCceEEEEeC
Q 021368          229 KS-DGFPTILFFPA  241 (313)
Q Consensus       229 ~v-~~~P~i~~~~~  241 (313)
                      ++ +++||++=|.+
T Consensus        91 ~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   91 GILTAVPTLLRWKR  104 (128)
T ss_pred             CceeecceeeEEcC
Confidence            44 89999999975

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.63  E-value=0.00038  Score=59.05  Aligned_cols=87  Identities=17%  Similarity=0.110  Sum_probs=63.8

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------ccCCCCcCceEEEEeCCCCCc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF  246 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------~~~~v~~~P~i~~~~~g~~~~  246 (313)
                      ++.-|++||.+.|+.|.++.|++..++.++.=  .+..+.+|....+.           .++++..+|++++...+....
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            45789999999999999999999999999854  45556666533221           368999999999996655421


Q ss_pred             CceeeccCcCHHHHHHHHHhc
Q 021368          247 DPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       247 ~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      .|+ -.|..+.++|.+-|...
T Consensus       221 ~pv-~~G~iS~deL~~Ri~~v  240 (248)
T PRK13703        221 RPL-SYGFITQDDLAKRFLNV  240 (248)
T ss_pred             EEE-eeccCCHHHHHHHHHHH
Confidence            333 33678888887766544

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00015  Score=59.38  Aligned_cols=175  Identities=17%  Similarity=0.191  Sum_probs=101.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG  126 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g  126 (313)
                      .....++.|++.| ..|.++..++..+|..+ ..+.|..++.+.   .++++..+.+...  |.+.++..+... -+..|
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~---~~eis~~~~v~~v--p~~~~~~~~~~v-~~l~~   88 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEE---FPEISNLIAVEAV--PYFVFFFLGEKV-DRLSG   88 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhh---hhHHHHHHHHhcC--ceeeeeecchhh-hhhhc
Confidence            4445667799999 99999999999999999 449999999998   6699999999998  988777555421 12233


Q ss_pred             CCCHHHHH---HHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhc--CCCcEEEEEe----CCCCccchhhh
Q 021368          127 ELTLDKIK---TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD--ESKDVLLEIY----APWCGHCQAFE  197 (313)
Q Consensus       127 ~~~~~~i~---~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~--~~k~~lv~fy----~~~C~~C~~~~  197 (313)
                      ........   ........ .. ..-.+..+-+.   .-..-+ . +++.+..  +.++++++.=    .|.|+..+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~e~---~~~~~~-~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v  161 (227)
T KOG0911|consen   89 ADPPFLVSKVEKLAESGSA-SL-GMGLSTTIRET---QTTNET-D-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLV  161 (227)
T ss_pred             cCcHHHHHHHHHhhhhccc-cc-CCCCCcchhcc---cccchh-h-HHHHHHHhcccCeEEEEecCCCCcccccccHHHH
Confidence            32222222   22222210 00 00000000000   000000 1 3333322  3455555432    46788888777


Q ss_pred             HHHHHHHHHhcCCCcEEEEEEeCCCcccccCC---CCcCceE-EEEeCCCC
Q 021368          198 PTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK---SDGFPTI-LFFPAGNK  244 (313)
Q Consensus       198 ~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~---v~~~P~i-~~~~~g~~  244 (313)
                      .++...        ++.+..+|+..++.-+.+   .+.+||+ -+|-+|..
T Consensus       162 ~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEF  204 (227)
T KOG0911|consen  162 GILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEF  204 (227)
T ss_pred             HHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEe
Confidence            766655        577899999988773332   3345554 34445554

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.59  E-value=0.00041  Score=52.01  Aligned_cols=91  Identities=9%  Similarity=-0.004  Sum_probs=64.9

Q ss_pred             hcCCCcEEEEEeCC----CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEEEe-CCCCC
Q 021368          175 LDESKDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP-AGNKS  245 (313)
Q Consensus       175 ~~~~k~~lv~fy~~----~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~~~-~g~~~  245 (313)
                      ..+.|..+|++|++    ||..|+..... .++.+.+..  ++.+...|+...+.    ..+++.++|++.++. .++..
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~   90 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM   90 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence            45679999999999    78888655321 334444544  68888899987765    578999999999983 22221


Q ss_pred             cCceeeccCcCHHHHHHHHHhcC
Q 021368          246 FDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       246 ~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .-..+..|..+.++|+..|+...
T Consensus        91 ~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          91 TIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHH
Confidence            11237889999999999887654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=97.56  E-value=7.2e-05  Score=58.16  Aligned_cols=69  Identities=22%  Similarity=0.505  Sum_probs=50.6

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCC-cEEEEEEeCCCccc---------------------------ccC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEH---------------------------HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~~~---------------------------~~~  228 (313)
                      .+|.+.++|-+.||++|+.+.|.+.++-..++++. .+-++.|+.+....                           ..|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            46999999999999999999999999999887742 24444444443211                           256


Q ss_pred             CCCcCceEEEE-eCCCCC
Q 021368          229 KSDGFPTILFF-PAGNKS  245 (313)
Q Consensus       229 ~v~~~P~i~~~-~~g~~~  245 (313)
                      .+.+.|++.+. ++|..+
T Consensus       112 ~v~~iP~l~i~~~dG~~v  129 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVV  129 (157)
T ss_pred             ccCcCceeEEecCCCCEe
Confidence            88999999887 455443

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.54  E-value=0.00027  Score=54.84  Aligned_cols=44  Identities=16%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      +++++|+|| +.||+.|....+.+.++..+++.. ++.++.+..+.
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~   67 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDS   67 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            788999999 589999999999999999988653 46666555443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=97.54  E-value=0.0002  Score=53.46  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=45.4

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEe-CCCcccccchhhhhCCCCCCCcEE
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ-MDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd-~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      +.+.+|.||++| ++|+...|.+.++++++.+.+.++.+- .+.+. ...+++++++..+  |++
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~--p~~   82 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAE-HQRFLKKHGLEAF--PYV   82 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHH-HHHHHHHhCCCCC--cEE
Confidence            557888899999 999999999999999987766655552 22222 5677888888766  765

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.51  E-value=0.0003  Score=56.21  Aligned_cols=103  Identities=21%  Similarity=0.249  Sum_probs=79.7

Q ss_pred             CeEEEc-CcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          161 DVKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       161 ~v~~l~-~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      ....+. ..+|-+... .+..+++.||-+.-..|+.|-..++.+|.++-.   ..|+++|+...+-  .+++|.-+|+++
T Consensus        67 ~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~  142 (211)
T KOG1672|consen   67 EYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVA  142 (211)
T ss_pred             eEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEE
Confidence            344554 566777663 567799999999999999999999999998765   7899999988876  899999999999


Q ss_pred             EEeCCCCCcCceeec--c---CcCHHHHHHHHHhc
Q 021368          238 FFPAGNKSFDPINVD--V---DRTVVALYKFLKKN  267 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~  267 (313)
                      +|.+|..+...+.|.  |   ..+.+.|..-|..-
T Consensus       143 l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S  177 (211)
T KOG1672|consen  143 LFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKS  177 (211)
T ss_pred             EEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence            999999886555565  2   23456555555443

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.43  E-value=0.0005  Score=53.69  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=51.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--------eEEEEEEeCCCccc----------------------ccc
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--------KLIFVYVQMDNEDV----------------------GKP   96 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--------~v~f~~vd~~~~~~----------------------~~~   96 (313)
                      ++..++|.|+++| ++|++..|.+.++..++.+        .+.++.|+.+....                      ...
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            3457888899999 9999999999998876653        37888888664210                      124


Q ss_pred             hhhhhCCCCCCCcEEEEEcCCC
Q 021368           97 VSEYFGITGEAPKVLAYTGNDD  118 (313)
Q Consensus        97 l~~~~~v~~~~~P~i~~~~~~~  118 (313)
                      +.+.|++.+.  |+.++++.++
T Consensus       104 l~~~y~v~~i--Pt~vlId~~G  123 (146)
T cd03008         104 LEAQFSVEEL--PTVVVLKPDG  123 (146)
T ss_pred             HHHHcCCCCC--CEEEEECCCC
Confidence            6678888877  8888887653

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.42  E-value=0.00067  Score=49.00  Aligned_cols=87  Identities=17%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             ccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCce
Q 021368           42 APSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK  121 (313)
Q Consensus        42 ~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~  121 (313)
                      ++.++.....++|-||.++  |......|.++|..+.+.+.|+.+.-      ..+.+.+++.   .|++.+++.....+
T Consensus        10 l~~~~~~~~~~vvg~f~~~--~~~~~~~f~~~A~~~r~~~~F~~~~~------~~~~~~~~~~---~~~i~l~~~~~~~~   78 (97)
T cd02981          10 LEKFLDKDDVVVVGFFKDE--ESEEYKTFEKVAESLRDDYGFGHTSD------KEVAKKLKVK---PGSVVLFKPFEEEP   78 (97)
T ss_pred             HHHHhccCCeEEEEEECCC--CcHHHHHHHHHHHhcccCCeEEEECh------HHHHHHcCCC---CCceEEeCCcccCC
Confidence            4445566666777788764  33788999999999987799988773      2567777763   36666776544445


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 021368          122 HILDGELTLDKIKTFGED  139 (313)
Q Consensus       122 ~~~~g~~~~~~i~~fi~~  139 (313)
                      ..|.|..+.++|.+|+..
T Consensus        79 ~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          79 VEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             ccCCCCCCHHHHHHHHHh
Confidence            668999999999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.42  E-value=0.0039  Score=47.78  Aligned_cols=109  Identities=8%  Similarity=0.107  Sum_probs=75.1

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCC--CCcc-c-hhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC--c
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAP--WCGH-C-QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--G  232 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~--~C~~-C-~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~--~  232 (313)
                      .|.+|+.++..+..=..+..-+|.|.-.  .|.. + ..+...+.++|+++++.+ +.|+.+|.+....  +.|++.  .
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~-i~Fv~vd~~~~~~~~~~fgl~~~~   81 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP-WGWLWTEAGAQLDLEEALNIGGFG   81 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEeCcccHHHHHHcCCCccC
Confidence            3566766655332212344445555432  1222 2 467888999999999832 8999999998765  778885  5


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      +|+++++...+.  +...+.|..+.++|.+|+.+.+.-+.
T Consensus        82 ~P~v~i~~~~~~--KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          82 YPAMVAINFRKM--KFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCEEEEEecccC--ccccccCccCHHHHHHHHHHHHcCCc
Confidence            899999976543  12237799999999999999987665

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.38  E-value=0.00034  Score=65.40  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             EEeCCC-cccccccCCC--ccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCC
Q 021368           35 TIFTRE-NAPSVFESPI--KNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGE  106 (313)
Q Consensus        35 ~~lt~~-~~~~~~~~~~--~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~  106 (313)
                      ..+++. .+++...+.+  ++++.||++| -.|+...+..-   ++..++.+ ++...+|.++.+. +.++.++||+-+.
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            445555 5666665555  7788899999 89998877432   45556666 8899999988542 6788899999877


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        |+++||+.+...+-...|.++.+.+.+++++.
T Consensus       536 --P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         536 --PTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             --CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence              99999996554445588999999999999875

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.38  E-value=0.00044  Score=55.30  Aligned_cols=104  Identities=10%  Similarity=0.008  Sum_probs=81.1

Q ss_pred             CCCceEEeC-CCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFT-RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt-~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ....+.++. ..+|-.....+..+++.||.+. ..|+-+-..|+.+|..+-+ ..|+.||+..   .|-|+.+++|+-. 
T Consensus        64 GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~---~PFlv~kL~IkVL-  138 (211)
T KOG1672|consen   64 GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEK---APFLVTKLNIKVL-  138 (211)
T ss_pred             CCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEeccc---CceeeeeeeeeEe-
Confidence            344566665 5566666767778888899999 9999999999999999999 9999999998   6699999999988 


Q ss_pred             CcEEEEEcCCCCceec--c---C--CCCCHHHHHHHHHH
Q 021368          108 PKVLAYTGNDDAKKHI--L---D--GELTLDKIKTFGED  139 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~--~---~--g~~~~~~i~~fi~~  139 (313)
                       |++++|.++...-+.  |   .  .+.+.+.|..-+..
T Consensus       139 -P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~  176 (211)
T KOG1672|consen  139 -PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK  176 (211)
T ss_pred             -eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence             999999887633221  1   1  24677777665554

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.36  E-value=0.00027  Score=49.50  Aligned_cols=56  Identities=16%  Similarity=0.379  Sum_probs=39.9

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ccCCCCcCceEEEEeCCC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------~~~~v~~~P~i~~~~~g~  243 (313)
                      ++.|+++||++|..+.+.+.++.  +..  .+.+..+|.+.+..       ...++.++|++++  +|.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            47899999999999999998886  221  36677776654331       3357789999854  544

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.29  E-value=0.00083  Score=47.53  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCC--CCcCceEEEEeCCCCCcCceeec
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAK--SDGFPTILFFPAGNKSFDPINVD  252 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~--v~~~P~i~~~~~g~~~~~~~~y~  252 (313)
                      ++++|..+||+.|..+...+.++.....   .+.+..+|+.....      ...+  ..++|.+++  +|..+       
T Consensus         1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i-------   68 (86)
T TIGR02183         1 FVVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV-------   68 (86)
T ss_pred             CEEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe-------
Confidence            3678999999999999999888764432   35666677764331      2223  368999965  44432       


Q ss_pred             cCcCHHHHHHHHHhcCCCC
Q 021368          253 VDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       253 g~~~~~~l~~fi~~~~~~~  271 (313)
                      |  ..++|.++++++.++.
T Consensus        69 g--G~~dl~~~~~~~~~~~   85 (86)
T TIGR02183        69 G--GCTDFEQLVKENFDIE   85 (86)
T ss_pred             c--CHHHHHHHHHhccccc
Confidence            2  3478889998887654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.29  E-value=0.0016  Score=54.53  Aligned_cols=83  Identities=12%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCC------cccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN------EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI  123 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~------~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~  123 (313)
                      .-+++||... +.|+.+.|++..++.++.=.|..+.+|...      ...+..+.+++||..+  |+++++..+....+.
T Consensus       122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~--Pal~Lv~~~~~~~~p  199 (215)
T PF13728_consen  122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT--PALFLVNPNTKKWYP  199 (215)
T ss_pred             eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC--CEEEEEECCCCeEEE
Confidence            4477788888 999999999999999995556555555321      0013578899999977  998888876633333


Q ss_pred             -cCCCCCHHHHHH
Q 021368          124 -LDGELTLDKIKT  135 (313)
Q Consensus       124 -~~g~~~~~~i~~  135 (313)
                       -.|.++.++|.+
T Consensus       200 v~~G~~s~~~L~~  212 (215)
T PF13728_consen  200 VSQGFMSLDELED  212 (215)
T ss_pred             EeeecCCHHHHHH
Confidence             368888888865

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=97.28  E-value=0.0016  Score=49.55  Aligned_cols=75  Identities=12%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc---c---------------------cccchhhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE---D---------------------VGKPVSEYF  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~---~---------------------~~~~l~~~~  101 (313)
                      .++..+|.||+.| +.|....|.+.++.+++++ .+.++.|++...   .                     ....+.+.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            3457788899999 9999999999999999985 477777755210   0                     123455667


Q ss_pred             CCCCCCCcEEEEEcCCCCceecc
Q 021368          102 GITGEAPKVLAYTGNDDAKKHIL  124 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~~~~~~~  124 (313)
                      ++.+.  |+.++++.++...+.+
T Consensus       102 ~v~~~--P~~~vid~~G~v~~~~  122 (126)
T cd03012         102 GNQYW--PALYLIDPTGNVRHVH  122 (126)
T ss_pred             CCCcC--CeEEEECCCCcEEEEE
Confidence            77766  7777776554333333

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.26  E-value=0.00071  Score=52.55  Aligned_cols=46  Identities=15%  Similarity=0.208  Sum_probs=38.4

Q ss_pred             CCCcEEEEEeCCCCcc-chhhhHHHHHHHHHhcCCC--cEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVD--SIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~~~~~--~v~~~~vd~~~  222 (313)
                      .+++++|.||++||+. |....+.+.++...++...  ++.+..+..+.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            4789999999999998 9999999999999997642  47777777654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.25  E-value=0.0004  Score=53.16  Aligned_cols=63  Identities=22%  Similarity=0.437  Sum_probs=38.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---cCCCCcCceEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAG  242 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~~~v~~~P~i~~~~~g  242 (313)
                      ..+..++.|..+||+.|....|.+.+++....   ++.+-.+.-+.+..  .   ..+...+|+++++.++
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence            34567888999999999999999999999754   34444443333332  2   2467899999999654

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.25  E-value=0.0037  Score=50.34  Aligned_cols=97  Identities=11%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc------c--------------------cccchhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------D--------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~------~--------------------~~~~l~~   99 (313)
                      .+...+++||..| +.|....+.+.++..++.+ .+.|+.|.++..      .                    ....+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            4456788899999 9999999999999999984 588888877541      0                    1235567


Q ss_pred             hhCCCCCCCcEEEEEcCCCCceecc---------CCCCCHHHHHHHHHHHhcCCCC
Q 021368          100 YFGITGEAPKVLAYTGNDDAKKHIL---------DGELTLDKIKTFGEDFLEGKLK  146 (313)
Q Consensus       100 ~~~v~~~~~P~i~~~~~~~~~~~~~---------~g~~~~~~i~~fi~~~~~~~~~  146 (313)
                      .||+...  |.+++++.++...+..         .+..+.+.+.+.|...+.|.-.
T Consensus       104 ~~~v~~~--P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  157 (171)
T cd02969         104 AYGAACT--PDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV  157 (171)
T ss_pred             HcCCCcC--CcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence            8899877  8888887655332221         1335678899999999886543

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.24  E-value=0.0023  Score=47.60  Aligned_cols=96  Identities=19%  Similarity=0.129  Sum_probs=67.0

Q ss_pred             EEcCcChHHHhhcCCCcEEEEEeC----CCCccchhhhHHHHHHHHHhc-CCCcEEEEEEeCCCccc--ccCCCCc----
Q 021368          164 IVVGNNFDEIVLDESKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTNEH--HRAKSDG----  232 (313)
Q Consensus       164 ~l~~~~f~~~l~~~~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~-~~~~v~~~~vd~~~~~~--~~~~v~~----  232 (313)
                      .++.++.....   ..+.++.||.    ..-..-..+...+.++|+.++ +  .+.|+.+|.+....  +.|+++.    
T Consensus         3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~   77 (111)
T cd03073           3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGE   77 (111)
T ss_pred             eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence            45666666653   3444555542    222334678889999999999 6  69999999887654  6778763    


Q ss_pred             CceEEEEeCCCCCcCceeeccCc-CHHHHHHHHHhc
Q 021368          233 FPTILFFPAGNKSFDPINVDVDR-TVVALYKFLKKN  267 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~-~~~~l~~fi~~~  267 (313)
                      +|++.++......  . ...+.. +.+.|.+|+.+.
T Consensus        78 ~P~~~i~~~~~~K--Y-~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          78 KPVVAIRTAKGKK--Y-VMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CCEEEEEeCCCCc--c-CCCcccCCHHHHHHHHHHh
Confidence            9999998754321  1 246677 999999999875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.23  E-value=0.0024  Score=54.04  Aligned_cols=95  Identities=6%  Similarity=-0.098  Sum_probs=65.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc-----c---cccchh-hhhCCCC-----------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----D---VGKPVS-EYFGITG-----------  105 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~-----~---~~~~l~-~~~~v~~-----------  105 (313)
                      .++.++|.||+.| +.|....|.|.++.++++++ +.|+.|+|+..     +   ....++ +++|+.-           
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            3457788899999 99999999999999999864 88888887421     0   022332 2333210           


Q ss_pred             ---------------------CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          106 ---------------------EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       106 ---------------------~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                                           ...|+.++++.++.....+.|..+.+.|.+.|++.++
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence                                 0015555666555556667888899999999988764

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0044  Score=47.89  Aligned_cols=86  Identities=15%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             hhcCCCcEEEEEeCCCCccchhhhHHHHH---HHHHhcCCCcEEEEEEeCCCccc------------------ccCCCCc
Q 021368          174 VLDESKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTNEH------------------HRAKSDG  232 (313)
Q Consensus       174 l~~~~k~~lv~fy~~~C~~C~~~~~~~~~---la~~~~~~~~v~~~~vd~~~~~~------------------~~~~v~~  232 (313)
                      +...++..+++|-++.|..|..+...+..   +-+.+..  ++.++.++++....                  +.|++++
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs  115 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS  115 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence            33457889999999999999999877643   4444544  67777777665321                  4578999


Q ss_pred             CceEEEEeCC-CCCcCceeeccCcCHHHHHHHH
Q 021368          233 FPTILFFPAG-NKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       233 ~P~i~~~~~g-~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      +|++++|... +.+-   ..-|.+..++++.-+
T Consensus       116 tPtfvFfdk~Gk~Il---~lPGY~ppe~Fl~vl  145 (182)
T COG2143         116 TPTFVFFDKTGKTIL---ELPGYMPPEQFLAVL  145 (182)
T ss_pred             CceEEEEcCCCCEEE---ecCCCCCHHHHHHHH
Confidence            9999999654 4432   445656555544433

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.16  E-value=0.0029  Score=52.32  Aligned_cols=92  Identities=7%  Similarity=-0.078  Sum_probs=64.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCC--------cccccchhhhhCCCCCCCc--------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSEYFGITGEAPK--------  109 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~--------~~~~~~l~~~~~v~~~~~P--------  109 (313)
                      .+..++|.|++.| +.|.+..|.+.++..++.+. +.|+.|+|+.        ......+++++|+. +  |        
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-f--pvl~d~~v~  114 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-Y--NFFEPIEVN  114 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-c--eeeeeeecc
Confidence            3457778899999 99999999999999999864 8889998742        11145566666652 2  2        


Q ss_pred             --------------------------------EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          110 --------------------------------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       110 --------------------------------~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                                                      +.++++.++.....+.|..+.+.+.+.|.+.++
T Consensus       115 g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        115 GENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             CCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                            233444444344556777888888888888765

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.15  E-value=0.00085  Score=54.59  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=37.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|.|||+||+.|.+ ++.+.++.++|++. ++.+..+.|..
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq   67 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ   67 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence            3689999999999999975 78999999999864 58888888853

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.00034  Score=57.36  Aligned_cols=74  Identities=16%  Similarity=0.313  Sum_probs=62.7

Q ss_pred             hhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceee
Q 021368          174 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINV  251 (313)
Q Consensus       174 l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y  251 (313)
                      +.+..+..++.||++||..|.++..++..++..++   ++.+.+.+.+....  ..+.+...|.+.++..|..+.   +.
T Consensus        13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~---~l   86 (227)
T KOG0911|consen   13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD---RL   86 (227)
T ss_pred             HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh---hh
Confidence            33467889999999999999999999999999983   58899998887766  678899999999998888875   55


Q ss_pred             cc
Q 021368          252 DV  253 (313)
Q Consensus       252 ~g  253 (313)
                      .|
T Consensus        87 ~~   88 (227)
T KOG0911|consen   87 SG   88 (227)
T ss_pred             hc
Confidence            55

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.07  E-value=0.0016  Score=51.41  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=35.1

Q ss_pred             CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+||+. ||+.|....+.+.++...+++. ++.+..|..+.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~   74 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK   74 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            468899999975 6888999999999998888754 46666666543

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.05  E-value=0.0046  Score=42.56  Aligned_cols=71  Identities=18%  Similarity=0.348  Sum_probs=53.0

Q ss_pred             EEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC-CCCHHH
Q 021368           55 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDK  132 (313)
Q Consensus        55 ~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g-~~~~~~  132 (313)
                      .+++++ +.|..+...+++++..+ + +.+-.+|..+   .+++ .+|||.+.  |++++ + |   ...+.| ..+.+.
T Consensus         4 ~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~---~~~~-~~ygv~~v--PalvI-n-g---~~~~~G~~p~~~e   70 (76)
T PF13192_consen    4 KVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIED---FEEI-EKYGVMSV--PALVI-N-G---KVVFVGRVPSKEE   70 (76)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTT---HHHH-HHTT-SSS--SEEEE-T-T---EEEEESS--HHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccC---HHHH-HHcCCCCC--CEEEE-C-C---EEEEEecCCCHHH
Confidence            347888 99999999999999999 4 6677777755   4466 99999988  99954 3 2   356778 788888


Q ss_pred             HHHHHH
Q 021368          133 IKTFGE  138 (313)
Q Consensus       133 i~~fi~  138 (313)
                      |..+++
T Consensus        71 l~~~l~   76 (76)
T PF13192_consen   71 LKELLE   76 (76)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            888874

...

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.03  E-value=0.0017  Score=50.82  Aligned_cols=47  Identities=15%  Similarity=0.272  Sum_probs=36.0

Q ss_pred             CCcE-EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368          178 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH  225 (313)
Q Consensus       178 ~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~  225 (313)
                      ++++ +++|++.||+.|+..++.+.++...+... ++.++.|..+....
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~~~   70 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESPEK   70 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCHHH
Confidence            3454 55556999999999999999999999753 57888887765543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=96.99  E-value=0.0068  Score=51.84  Aligned_cols=90  Identities=18%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc------cccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHI  123 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~------~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~  123 (313)
                      .-+++||... +.|.++.|+++.++.++.=.+..+.+|..-..      .+..+++++||..+  |++++.+.+....+.
T Consensus       152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--Pal~Lv~~~t~~~~p  229 (256)
T TIGR02739       152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF--PALYLVNPKSQKMSP  229 (256)
T ss_pred             eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC--ceEEEEECCCCcEEE
Confidence            4577788888 99999999999999999977777777765211      12458889999988  998888877544443


Q ss_pred             c-CCCCCHHHHHHHHHHHhc
Q 021368          124 L-DGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       124 ~-~g~~~~~~i~~fi~~~~~  142 (313)
                      . .|.++.++|.+=+...+.
T Consensus       230 v~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       230 LAYGFISQDELKERILNVLT  249 (256)
T ss_pred             EeeccCCHHHHHHHHHHHHh
Confidence            3 588999999877766554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=96.99  E-value=0.0062  Score=49.96  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=58.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEe-------------CC--CcccccchhhhhCCCCCCCcEE
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ-------------MD--NEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd-------------~~--~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      .+++.++.||++| +.|+...|.+.++..+....+.++..|             .+  .......+.+.||+...  |+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~--P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI--PYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc--ceE
Confidence            4456788899999 999999999999987764444444321             00  00013366778888877  887


Q ss_pred             EEEcCCCCceeccCCC-CCHHHHHHHHHHHhc
Q 021368          112 AYTGNDDAKKHILDGE-LTLDKIKTFGEDFLE  142 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~  142 (313)
                      ++++.++.  ..+.|. .+.+.+.+.++..-.
T Consensus       151 ~lID~~G~--I~~~g~~~~~~~le~ll~~l~~  180 (189)
T TIGR02661       151 VLLDQDGK--IRAKGLTNTREHLESLLEADRE  180 (189)
T ss_pred             EEECCCCe--EEEccCCCCHHHHHHHHHHHHc
Confidence            77776542  233443 466777777766533

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=96.95  E-value=0.0029  Score=40.74  Aligned_cols=59  Identities=22%  Similarity=0.352  Sum_probs=46.5

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchh---hhhCCCCCCCcEEEEEcCC
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS---EYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~---~~~~v~~~~~P~i~~~~~~  117 (313)
                      +++|+..| +.|.++.+.+.++ ......+.+..++++...   ...   ..+++...  |++++++.+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGV--PTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccc--cEEEEEeCC
Confidence            36788888 9999999999999 444456999999998843   433   37788877  999888765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.94  E-value=0.0022  Score=49.93  Aligned_cols=43  Identities=16%  Similarity=0.302  Sum_probs=35.4

Q ss_pred             CCCcEEEEEeCCC-CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+||+.| |++|...++.+.++..+++   ++.+..++.+.
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~   68 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL   68 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence            3678999999998 6999999999999999874   46677777653

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=96.94  E-value=0.0022  Score=50.18  Aligned_cols=43  Identities=9%  Similarity=0.125  Sum_probs=35.0

Q ss_pred             CcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          179 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       179 k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      ++++|.|| ++||+.|....+.+.++..+++.. ++.+..+..+.
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~   72 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDS   72 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC
Confidence            77787777 899999999999999999999753 57777676554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=96.93  E-value=0.0024  Score=49.85  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=58.0

Q ss_pred             CCCccEEEEEee-C-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc------------------cccchhhhhCCC--
Q 021368           48 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGIT--  104 (313)
Q Consensus        48 ~~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~------------------~~~~l~~~~~v~--  104 (313)
                      .++..+|.||.. | ++|....|.+.+++++++++ +.++.|..+...                  ....+.+.+|+.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            456778889999 9 99999999999999987754 666666644332                  135778889988  


Q ss_pred             -------CCCCcEEEEEcCCCCceeccCCCCC
Q 021368          105 -------GEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus       105 -------~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                             ++  |++++++.++...+...|..+
T Consensus       107 ~~~~~~~~~--P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  107 EDPGNGFGI--PTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             CCTTTTSSS--SEEEEEETTSBEEEEEESSBT
T ss_pred             cccccCCee--cEEEEEECCCEEEEEEeCCCC
Confidence                   77  888788776655555444433

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=96.93  E-value=0.0023  Score=51.37  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=35.1

Q ss_pred             CCCcEEEEEeCCC-CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+||++| |++|...++.+.+++..+.   ++.+..+.++.
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~   86 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL   86 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence            3679999999999 9999999999999998873   46666666554

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=96.91  E-value=0.0065  Score=49.68  Aligned_cols=91  Identities=11%  Similarity=0.103  Sum_probs=60.1

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~  228 (313)
                      .+++++|+|| +.||+.|...++.|.++..+|.+. ++.+..+..+....                           ..|
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y  108 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  108 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence            3578999999 999999999999999999998654 34455454443111                           234


Q ss_pred             CC----CcC--ceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhcC
Q 021368          229 KS----DGF--PTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKNA  268 (313)
Q Consensus       229 ~v----~~~--P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~~  268 (313)
                      ++    .+.  |+.++...+..+.....+.  ..++.+++++.|...-
T Consensus       109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence            54    245  9888886444431222232  2468899999986653

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=96.90  E-value=0.0034  Score=47.08  Aligned_cols=92  Identities=13%  Similarity=0.069  Sum_probs=66.0

Q ss_pred             cCCCccEEEEEee----C-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC---
Q 021368           47 ESPIKNQLLLFAV----S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD---  118 (313)
Q Consensus        47 ~~~~~~~v~f~~~----~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~---  118 (313)
                      +..+..+|+|+++    | ..|+..... .++.+-++..+.+...|.+..+ +.+++..++++.+  |+++++....   
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~~--P~~~~l~~~~~~~   90 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPE-GYRVSQALRERTY--PFLAMIMLKDNRM   90 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCCC--CEEEEEEecCCce
Confidence            4566777889998    4 455444221 2355555667888899998866 7899999999999  9988884222   


Q ss_pred             CceeccCCCCCHHHHHHHHHHHhc
Q 021368          119 AKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       119 ~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ....+..|.++.+++...+.....
T Consensus        91 ~vv~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          91 TIVGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHh
Confidence            123456899999999999887754

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PLN02412 probable glutathione peroxidase

Probab=96.90  E-value=0.009  Score=47.97  Aligned_cols=42  Identities=5%  Similarity=-0.017  Sum_probs=35.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD   89 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~   89 (313)
                      .++..+|.||+.| +.|.+..|.|.++.++|.+. +.|+.|+++
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            3456777799999 99999999999999999974 888999875

>KOG3414 consensus Component of the U4/U6

Probab=96.87  E-value=0.0053  Score=45.53  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=62.2

Q ss_pred             cCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCC
Q 021368          166 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  242 (313)
Q Consensus       166 ~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g  242 (313)
                      ++...++.+.. ..+.++|-|...|-+.|..|-..+.+++..+++  -..++.+|.+.-..  +-|.+...|++.+|-++
T Consensus        10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~   87 (142)
T KOG3414|consen   10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN   87 (142)
T ss_pred             cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence            34556666643 457899999999999999999999999999987  56777788776554  67899999999888776


Q ss_pred             CCC
Q 021368          243 NKS  245 (313)
Q Consensus       243 ~~~  245 (313)
                      +..
T Consensus        88 kHm   90 (142)
T KOG3414|consen   88 KHM   90 (142)
T ss_pred             ceE
Confidence            553

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.85  E-value=0.0027  Score=42.73  Aligned_cols=65  Identities=12%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC----CCCcCceEEEEeCCCCCcCceeeccCc
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGFPTILFFPAGNKSFDPINVDVDR  255 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~----~v~~~P~i~~~~~g~~~~~~~~y~g~~  255 (313)
                      ++.|+++||++|..+...+.+.        ++.+..++++.+..  ..+    ....+|++++  +|.      .+.| .
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~------~i~g-~   64 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE------HLSG-F   64 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE------EEec-C
Confidence            5789999999999988877663        34555666665432  222    5679999976  332      4445 4


Q ss_pred             CHHHHHHH
Q 021368          256 TVVALYKF  263 (313)
Q Consensus       256 ~~~~l~~f  263 (313)
                      +...|.++
T Consensus        65 ~~~~l~~~   72 (73)
T cd02976          65 RPDKLRAL   72 (73)
T ss_pred             CHHHHHhh
Confidence            55666655

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.85  E-value=0.011  Score=50.38  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=68.9

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc------cccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHI  123 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~------~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~  123 (313)
                      .-+++||... +.|.++.|+++.++.++.=.|..+.+|..-..      .+....+++||..+  |++++.+.+....+.
T Consensus       145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--PAl~Lv~~~t~~~~p  222 (248)
T PRK13703        145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF--PALMLVDPKSGSVRP  222 (248)
T ss_pred             ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc--ceEEEEECCCCcEEE
Confidence            4577788887 99999999999999999987888888863311      12346678999988  988888776544443


Q ss_pred             c-CCCCCHHHHHHHHHHHhcC
Q 021368          124 L-DGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       124 ~-~g~~~~~~i~~fi~~~~~~  143 (313)
                      . .|.++.++|.+=+...+.+
T Consensus       223 v~~G~iS~deL~~Ri~~v~t~  243 (248)
T PRK13703        223 LSYGFITQDDLAKRFLNVSTD  243 (248)
T ss_pred             EeeccCCHHHHHHHHHHHHhc
Confidence            3 6889999998877766543

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.82  E-value=0.0038  Score=50.71  Aligned_cols=106  Identities=21%  Similarity=0.298  Sum_probs=83.1

Q ss_pred             CCeEEE-cCcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCce
Q 021368          160 GDVKIV-VGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT  235 (313)
Q Consensus       160 ~~v~~l-~~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~  235 (313)
                      +.|.++ +++.|.+.|...-  -..+|..|-+.-..|..+...+.-+|..+.   .+.|+++-.+.-.. .+|....+|+
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~gas~~F~~n~lP~  214 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNTGASDRFSLNVLPT  214 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccccchhhhcccCCce
Confidence            456666 5688888885442  357888999999999999999999987775   48999988665555 7899999999


Q ss_pred             EEEEeCCCCCcCceeec---c-CcCHHHHHHHHHhcC
Q 021368          236 ILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNA  268 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~  268 (313)
                      +++|++|..+.+.+...   | ......|.+|++...
T Consensus       215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g  251 (273)
T KOG3171|consen  215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG  251 (273)
T ss_pred             EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence            99999999876555444   2 456788999999874

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=96.79  E-value=0.0025  Score=51.48  Aligned_cols=87  Identities=10%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------  225 (313)
                      .++.++|+|| +.||+.|....+.+.++..+|.+. ++.+..|.++....                              
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~  106 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS  106 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence            3588999999 899999999999999999999753 45555565443210                              


Q ss_pred             ccCCCC------cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhc
Q 021368          226 HRAKSD------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKN  267 (313)
Q Consensus       226 ~~~~v~------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~  267 (313)
                      ..|++.      ..|+.+++. +|....   .+.+    ..+.+.+++.|+..
T Consensus       107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         107 RDYGVLDEEEGVALRGTFIIDPEGIIRH---ITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HHhCCccccCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence            133543      467888885 444432   2222    34678888888765

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.78  E-value=0.0057  Score=43.60  Aligned_cols=94  Identities=18%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCC----cCc-eE
Q 021368          166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSD----GFP-TI  236 (313)
Q Consensus       166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~----~~P-~i  236 (313)
                      +..+|..++. ..+.++|.|..+--. -......+.++|...++  .-.++.+||+..+.    .++.+.    .-| .+
T Consensus         8 d~KdfKKLLR-Tr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L   83 (112)
T cd03067           8 DHKDFKKLLR-TRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL   83 (112)
T ss_pred             chHHHHHHHh-hcCcEEEEEecchhh-HHHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence            3467888774 456677777665432 34555688999999988  56888899998665    456665    344 46


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      .-|++|....   .|+...+..+|+.|+++
T Consensus        84 kHYKdG~fHk---dYdR~~t~kSmv~FlrD  110 (112)
T cd03067          84 KHYKDGDFHT---EYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             hcccCCCccc---cccchhhHHHHHHHhhC
Confidence            7788998764   89999999999999975

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.027  Score=48.70  Aligned_cols=119  Identities=16%  Similarity=0.196  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhcCCCceEEeCCCcccccccCCCcc---EEEEEeeC-----CchhhhhHHHHHHHHhccC--------eEE
Q 021368           19 KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN---QLLLFAVS-----NDSEKLLPVFEEAAKSFKG--------KLI   82 (313)
Q Consensus        19 ~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~---~v~f~~~~-----~~c~~~~~~~~~~a~~~~~--------~v~   82 (313)
                      .+.+...+.-.+...|..++++.|..++..+...   +++|-+..     .-|..+...|.-+|..+..        ++-
T Consensus        27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF  106 (331)
T KOG2603|consen   27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF  106 (331)
T ss_pred             HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence            4666667766778899999999999987633222   34454444     3477777888888877652        689


Q ss_pred             EEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceec---c---CCCCCHHHHHHHHHHHhc
Q 021368           83 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI---L---DGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        83 f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~---~---~g~~~~~~i~~fi~~~~~  142 (313)
                      |..||.++   .+++.+.+++...  |++..|.+..+++-+   +   +-...+|++.+|+++...
T Consensus       107 F~~Vd~~e---~p~~Fq~l~ln~~--P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  107 FCMVDYDE---SPQVFQQLNLNNV--PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK  167 (331)
T ss_pred             EEEEeccc---cHHHHHHhcccCC--CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence            99999998   6799999999998  999999665543221   1   113459999999999754

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.75  E-value=0.0041  Score=43.12  Aligned_cols=56  Identities=11%  Similarity=0.266  Sum_probs=39.6

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~  243 (313)
                      .+.-+++|..+||+.|......|.+.        ++.+-.+|++.+..     ...+...+|.+++  +|.
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~   66 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK   66 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence            44557789999999999999888653        35555677766533     2236688999865  444

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=96.73  E-value=0.008  Score=44.01  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC-CcccccchhhhhC--CCCCCCcEEEEEcCCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFG--ITGEAPKVLAYTGNDD  118 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~-~~~~~~~l~~~~~--v~~~~~P~i~~~~~~~  118 (313)
                      ....++.||++| +.|+.+.|.+.+++.++...+.|..+|.. .   .+.+...++  +..+  |++.++..+.
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~--p~~~~~~~~~  100 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE---NPDLAAEFGVAVRSI--PTLLLFKDGK  100 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC---ChHHHHHHhhhhccC--CeEEEEeCcc
Confidence            445566678999 99999999999999999977899999996 4   558888998  7777  8887665554

>TIGR03137 AhpC peroxiredoxin

Probab=96.70  E-value=0.0031  Score=51.69  Aligned_cols=88  Identities=11%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-------------------------c--ccC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------------H--HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------------------------~--~~~  228 (313)
                      .+++++|+|| +.||+.|...++.+.++..++++. ++.+..+.++...                         .  ..|
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~  108 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF  108 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence            4678999999 999999999999999999998654 3445445443210                         0  234


Q ss_pred             CCC------cCceEEEEe-CCCCCcCceeec-c--CcCHHHHHHHHHhc
Q 021368          229 KSD------GFPTILFFP-AGNKSFDPINVD-V--DRTVVALYKFLKKN  267 (313)
Q Consensus       229 ~v~------~~P~i~~~~-~g~~~~~~~~y~-g--~~~~~~l~~fi~~~  267 (313)
                      ++.      ..|+.+++. +|...  .+.+. .  ..+.+.+++.|...
T Consensus       109 gv~~~~~g~~~p~tfiID~~G~I~--~~~~~~~~~~~~~~~ll~~l~~~  155 (187)
T TIGR03137       109 GVLIEEAGLADRGTFVIDPEGVIQ--AVEITDNGIGRDASELLRKIKAA  155 (187)
T ss_pred             CCcccCCCceeeEEEEECCCCEEE--EEEEeCCCCCCCHHHHHHHHHHh
Confidence            554      358888885 45443  22221 1  34778888877543

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13190 putative peroxiredoxin; Provisional

Probab=96.69  E-value=0.0092  Score=49.51  Aligned_cols=91  Identities=10%  Similarity=0.055  Sum_probs=60.0

Q ss_pred             CCcEEE-EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------------------c---------cc
Q 021368          178 SKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------H---------HR  227 (313)
Q Consensus       178 ~k~~lv-~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------------~---------~~  227 (313)
                      ++.++| +|++.||+.|....+.+.++..+|++. ++.+..+.++...                    .         ..
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            555554 689999999999999999999998754 4555555554210                    0         23


Q ss_pred             CCCC------cCceEEEEeCCCCCcCceee--ccCcCHHHHHHHHHhcCC
Q 021368          228 AKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       228 ~~v~------~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~  269 (313)
                      |++.      .+|+.+++..+..+.....|  .+.++.+++++.|.....
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~  155 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV  155 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence            4552      47999999655444111122  235789999999987653

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=96.67  E-value=0.0038  Score=48.22  Aligned_cols=45  Identities=16%  Similarity=0.185  Sum_probs=37.2

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+|| +.||+.|....+.+.++..+++.. ++.++.+..+.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~   66 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDS   66 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            5788999999 789999999999999999998543 57777776654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=96.60  E-value=0.004  Score=49.24  Aligned_cols=74  Identities=24%  Similarity=0.545  Sum_probs=45.7

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHH-H--HHHHHHhcCCCcEEEEEEeCCCccc--ccC--------CCCcCc
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFP  234 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~~~--------~v~~~P  234 (313)
                      +.|.. ....+|+++|.++++||.-|..|... |  .+++..+..  +++-+++|.+..+.  ..|        +..++|
T Consensus        28 ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP  104 (163)
T PF03190_consen   28 EALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP  104 (163)
T ss_dssp             HHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred             HHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence            33444 34678999999999999999988764 3  456666755  68888899887655  233        667999


Q ss_pred             eEEEE-eCCCC
Q 021368          235 TILFF-PAGNK  244 (313)
Q Consensus       235 ~i~~~-~~g~~  244 (313)
                      +.++. ++|..
T Consensus       105 l~vfltPdg~p  115 (163)
T PF03190_consen  105 LTVFLTPDGKP  115 (163)
T ss_dssp             EEEEE-TTS-E
T ss_pred             ceEEECCCCCe
Confidence            98888 44544

; PDB: 3IRA_A.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.60  E-value=0.011  Score=41.25  Aligned_cols=71  Identities=6%  Similarity=0.037  Sum_probs=51.2

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT  256 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~  256 (313)
                      +..|..+||++|..+...|.+.        ++.+-.+|++.+..     ...+...+|.+++  ++ .     ... +++
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~-----~~~-Gf~   65 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L-----SWS-GFR   65 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E-----EEe-cCC
Confidence            6678899999999998888553        57777788876553     2346678999976  32 2     233 478


Q ss_pred             HHHHHHHHHhcCC
Q 021368          257 VVALYKFLKKNAS  269 (313)
Q Consensus       257 ~~~l~~fi~~~~~  269 (313)
                      .+.|.+.++.+..
T Consensus        66 ~~~l~~~~~~~~~   78 (81)
T PRK10329         66 PDMINRLHPAPHA   78 (81)
T ss_pred             HHHHHHHHHhhhh
Confidence            8999998887653

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=96.59  E-value=0.0085  Score=40.31  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=50.2

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL  130 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~  130 (313)
                      +.+|+++| ++|+.+.+.|++     .+ +.+..+|.++... ...+++.+|+.+.  |++.+.  +.    .+.| .+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~~-i~~~~vdi~~~~~~~~~~~~~~~~~~v--P~~~~~--~~----~~~g-~~~   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----KG-IAFEEIDVEKDSAAREEVLKVLGQRGV--PVIVIG--HK----IIVG-FDP   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----CC-CeEEEEeccCCHHHHHHHHHHhCCCcc--cEEEEC--CE----EEee-CCH
Confidence            45688899 999999998875     23 7888889876421 1246778999988  999763  22    1445 577


Q ss_pred             HHHHHHH
Q 021368          131 DKIKTFG  137 (313)
Q Consensus       131 ~~i~~fi  137 (313)
                      +.|.+++
T Consensus        67 ~~i~~~i   73 (74)
T TIGR02196        67 EKLDQLL   73 (74)
T ss_pred             HHHHHHh
Confidence            8888776

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.57  E-value=0.0034  Score=40.89  Aligned_cols=49  Identities=14%  Similarity=0.304  Sum_probs=38.1

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c-CCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~-~~v~~~P~i~~  238 (313)
                      +++|..+||+.|..+...|.+.        ++.+..+|++....  +   + .+..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            5789999999999998888554        47777788887743  2   2 28899999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=96.56  E-value=0.0021  Score=44.98  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             ccCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           46 FESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        46 ~~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      -.++++.+|+|+++| +.|+.+...+   .++...+.+.+.++.||.++.+   ......+ .++  |+++|++
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~---~~~~~~~-~~~--P~~~~ld   81 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED---PNAQFDR-QGY--PTFFFLD   81 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH---HHHHHHH-CSS--SEEEEEE
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC---hhHHhCC-ccC--CEEEEeC
Confidence            356778899999999 9999998877   4566656677999999998743   2222222 445  9998875

...

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.45  E-value=0.012  Score=47.38  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             CCCeEEEcCcChHHHhhcC--CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~--~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i  236 (313)
                      -+.|..+++..|-+.+...  +-.|+|..|...-+.|.-+...+..+|.+|..   +.|+++-.+.. ...|--...||+
T Consensus        90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~c-IpNYPe~nlPTl  165 (240)
T KOG3170|consen   90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTC-IPNYPESNLPTL  165 (240)
T ss_pred             ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccc-cCCCcccCCCeE
Confidence            3679999999999988543  34678889999999999999999999999986   67777654432 245666789999


Q ss_pred             EEEeCCCCCcC---ceeecc-CcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFD---PINVDV-DRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~---~~~y~g-~~~~~~l~~fi~~~~  268 (313)
                      ++|..|.....   +..+-| ..+.+.+..++-+..
T Consensus       166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag  201 (240)
T KOG3170|consen  166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG  201 (240)
T ss_pred             EEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence            99998865431   223444 346778877776654

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=96.44  E-value=0.023  Score=44.76  Aligned_cols=40  Identities=5%  Similarity=0.002  Sum_probs=35.1

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM   88 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~   88 (313)
                      ++.++|.|+++| +.|....|.+.++..+|.+ .+.|..|+|
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            446678899999 9999999999999999986 488999987

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.41  E-value=0.033  Score=44.97  Aligned_cols=109  Identities=14%  Similarity=0.054  Sum_probs=75.9

Q ss_pred             HHHHHhcCCCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchh
Q 021368           23 ADFVFSNKLPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS   98 (313)
Q Consensus        23 ~~fi~~~~~~~v~~lt~~~~~~~~---~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~   98 (313)
                      ..-........|.+++..++..-+   +.+..++|.+|... +.|.-+...|.++|.+|.. ++|+.+-.+.+.      
T Consensus        82 r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI------  154 (240)
T KOG3170|consen   82 RATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI------  154 (240)
T ss_pred             HHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc------
Confidence            333456677889999887776632   33434445589998 9999999999999999999 899988877643      


Q ss_pred             hhhCCCCCCCcEEEEEcCCCCc-----eeccCC-CCCHHHHHHHHHHH
Q 021368           99 EYFGITGEAPKVLAYTGNDDAK-----KHILDG-ELTLDKIKTFGEDF  140 (313)
Q Consensus        99 ~~~~v~~~~~P~i~~~~~~~~~-----~~~~~g-~~~~~~i~~fi~~~  140 (313)
                      -.|--..  .||+++|..|...     ...+.| ..+.+++..|+-+.
T Consensus       155 pNYPe~n--lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  155 PNYPESN--LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             CCCcccC--CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence            1232333  4999888776521     223444 36788888887764

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=96.40  E-value=0.015  Score=44.34  Aligned_cols=70  Identities=13%  Similarity=0.054  Sum_probs=43.5

Q ss_pred             cccCCCccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCc
Q 021368           45 VFESPIKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  120 (313)
Q Consensus        45 ~~~~~~~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~  120 (313)
                      .-+.+++.+|.|+++| +.|+.+....-   ++.......+..+.++.+..+.+..   ..| .+  .|+++|++.+...
T Consensus        19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---~~g-~~--vPtivFld~~g~v   92 (130)
T cd02960          19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---PDG-QY--VPRIMFVDPSLTV   92 (130)
T ss_pred             HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---ccC-cc--cCeEEEECCCCCC
Confidence            3467778889999999 99999977542   3445554345555666543210111   233 33  4999999876543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.38  E-value=0.0063  Score=44.57  Aligned_cols=82  Identities=12%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      ..+..++.++++.........+++|-.+.   +.+....=++-++.+.|.+.+..+.+.-..   ...+..+||+...  
T Consensus         9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~~--   83 (107)
T PF07449_consen    9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRRW--   83 (107)
T ss_dssp             -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TSS--
T ss_pred             cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCccC--
Confidence            35678888899988877644444444443   556666668889999999988888888544   4599999999988  


Q ss_pred             cEEEEEcCCC
Q 021368          109 KVLAYTGNDD  118 (313)
Q Consensus       109 P~i~~~~~~~  118 (313)
                      |++++++.|.
T Consensus        84 PaLvf~R~g~   93 (107)
T PF07449_consen   84 PALVFFRDGR   93 (107)
T ss_dssp             SEEEEEETTE
T ss_pred             CeEEEEECCE
Confidence            9999999875

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.35  E-value=0.0064  Score=51.56  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEE--Ee-----------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK--MD-----------------------------------  219 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~--vd-----------------------------------  219 (313)
                      +++.+++.|..+.|++|+.+.+.+.++...     ++.+..  +.                                   
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~  180 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS  180 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence            467889999999999999999888876431     122211  11                                   


Q ss_pred             ---CCCccc------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          220 ---GTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       220 ---~~~~~~------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                         |.....      ++++++++|+++ +.+|.      .+.|....+.|.++|.+.
T Consensus       181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~------~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGT------LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccccchHHHhHHHHHHcCCccccEEE-EcCCe------EeeCCCCHHHHHHHHHHc
Confidence               110000      345899999998 56665      457878899999999864

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.31  E-value=0.013  Score=39.63  Aligned_cols=64  Identities=13%  Similarity=0.200  Sum_probs=42.7

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-c----cCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H----RAKSDGFPTILFFPAGNKSFDPINVDVDRT  256 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~----~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~  256 (313)
                      +++|..+||+.|......+.+.        ++.+..+|++.+.. .    ..+...+|.+++  +|..      . |  .
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~------i-g--g   63 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGEL------I-G--G   63 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEE------E-e--C
Confidence            6788999999999998888753        35566667765543 1    236678999854  4443      2 2  3


Q ss_pred             HHHHHHHH
Q 021368          257 VVALYKFL  264 (313)
Q Consensus       257 ~~~l~~fi  264 (313)
                      .+.|.+|+
T Consensus        64 ~~~l~~~l   71 (72)
T cd03029          64 SDDLEKYF   71 (72)
T ss_pred             HHHHHHHh
Confidence            56666665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=96.28  E-value=0.021  Score=45.03  Aligned_cols=40  Identities=10%  Similarity=0.017  Sum_probs=34.0

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD   89 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~   89 (313)
                      ++.++|.|++.| + |....|.|.++.++|.+ .+.|+.|.++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            457778899999 8 99999999999999975 4888888764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.24  E-value=0.032  Score=40.91  Aligned_cols=91  Identities=14%  Similarity=0.200  Sum_probs=59.1

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCC----
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGN----  243 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~----  243 (313)
                      +.+.+++. ..+.++|-|+...-.   .....|.++|..++.  .+.|+..... .....+++  .|++++|+...    
T Consensus         9 ~~l~~f~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~~-~~~~~~~~--~~~ivl~~p~~~~~k   79 (104)
T cd03069           9 AEFEKFLS-DDDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTSDK-QLLEKYGY--GEGVVLFRPPRLSNK   79 (104)
T ss_pred             HHHHHHhc-cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEEChH-HHHHhcCC--CCceEEEechhhhcc
Confidence            45666553 456666666654322   567889999999987  5777654422 22356666  68888884311    


Q ss_pred             CCcCceeeccCcCHHHHHHHHHhc
Q 021368          244 KSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       244 ~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      .-...+.|.|..+.+.|.+||..+
T Consensus        80 ~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          80 FEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             cCcccccccCcCCHHHHHHHHHhh
Confidence            111335799988899999999876

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.22  E-value=0.022  Score=41.78  Aligned_cols=88  Identities=19%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             cccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC----
Q 021368           41 NAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN----  116 (313)
Q Consensus        41 ~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~----  116 (313)
                      .++.++......+|-||.....  .....|.++|..+.....|+.....      .+...+++  .  |.++++++    
T Consensus        10 ~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~--~~ivl~~p~~~~   77 (104)
T cd03069          10 EFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--G--EGVVLFRPPRLS   77 (104)
T ss_pred             HHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--C--CceEEEechhhh
Confidence            3455555555666667766421  5778888999999877888775542      56778888  4  44555532    


Q ss_pred             --CCCceeccCCCCCHHHHHHHHHHH
Q 021368          117 --DDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       117 --~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        -......|.|..+.+.|.+||...
T Consensus        78 ~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          78 NKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             cccCcccccccCcCCHHHHHHHHHhh
Confidence              112344589989999999999763

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.20  E-value=0.034  Score=40.57  Aligned_cols=91  Identities=14%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             CCccccccc-CCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC
Q 021368           39 RENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND  117 (313)
Q Consensus        39 ~~~~~~~~~-~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~  117 (313)
                      .+.++.+.. .....+|-||.....  .....|.++|..+.....|+.....      .+...+++. .  |.+.++...
T Consensus         8 ~~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~~-~--~~i~l~~~~   76 (102)
T cd03066           8 ERELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFDS------KVAKKLGLK-M--NEVDFYEPF   76 (102)
T ss_pred             HHHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECcH------HHHHHcCCC-C--CcEEEeCCC
Confidence            344666776 555566667766422  4667899999999777888765532      566777774 3  667677552


Q ss_pred             CCceecc-CCCCCHHHHHHHHHHH
Q 021368          118 DAKKHIL-DGELTLDKIKTFGEDF  140 (313)
Q Consensus       118 ~~~~~~~-~g~~~~~~i~~fi~~~  140 (313)
                      ......| .|..+.+.|.+||...
T Consensus        77 ~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          77 MEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCcccCCCCCCHHHHHHHHHHh
Confidence            3334568 7888999999999753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.18  E-value=0.019  Score=55.36  Aligned_cols=117  Identities=9%  Similarity=0.074  Sum_probs=84.1

Q ss_pred             ccccCCCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCccEE-EEEeeC-CchhhhhHHHHHHHHhccCeEEEE
Q 021368            9 ISYFADGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKNQL-LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFV   84 (313)
Q Consensus         9 ~~~y~~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~~v-~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~   84 (313)
                      .+.| .|==.=+++.+||..-  ....-..|+.+..+.+-.-..+.-| +|++++ +.|......+.+++....+ |..-
T Consensus       434 ~i~f-~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i~~~  511 (555)
T TIGR03143       434 GLKF-HGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-VEAE  511 (555)
T ss_pred             ceEE-EecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-ceEE
Confidence            4778 6665556666666432  1223345666665555443345445 467888 9999999999999999886 8899


Q ss_pred             EEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368           85 YVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus        85 ~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      .+|...   .++++++|+|.+.  |++++ ++    ...+.|..+.++|..++
T Consensus       512 ~i~~~~---~~~~~~~~~v~~v--P~~~i-~~----~~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       512 MIDVSH---FPDLKDEYGIMSV--PAIVV-DD----QQVYFGKKTIEEMLELI  554 (555)
T ss_pred             EEECcc---cHHHHHhCCceec--CEEEE-CC----EEEEeeCCCHHHHHHhh
Confidence            999988   6699999999988  99965 22    23457888999998876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.15  E-value=0.011  Score=39.56  Aligned_cols=49  Identities=14%  Similarity=0.238  Sum_probs=35.4

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~  238 (313)
                      ++.|+++||++|+.+...+.+..        +.+..+|+..+..  .    ..+...+|++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~   56 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI   56 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            56789999999999998888763        5566778776653  2    234567787754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.04  Score=42.76  Aligned_cols=90  Identities=8%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHHH---HHHHhccCeEEEEEEeCCCccc-------------ccchhhhhCCCCCCCc
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDV-------------GKPVSEYFGITGEAPK  109 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~~---~~a~~~~~~v~f~~vd~~~~~~-------------~~~l~~~~~v~~~~~P  109 (313)
                      -.++..+++|-++. ..|.++...+.   ++-+-+.+.+.+++++.+.+..             ..+|++.|+|+++  |
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst--P  117 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST--P  117 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC--c
Confidence            34444455566666 88998877654   3556677778888888655431             2489999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      ++++++..+...+..-|.+..+.+..-+.
T Consensus       118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         118 TFVFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             eEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            99999887655666788888887654443

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=96.13  E-value=0.044  Score=44.54  Aligned_cols=85  Identities=12%  Similarity=0.084  Sum_probs=59.3

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEE------EEEeCCCcc--------------------------ccc
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF------VYVQMDNED--------------------------VGK   95 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f------~~vd~~~~~--------------------------~~~   95 (313)
                      ++.++|-|++.| ++|+.-.|.+..++.+  + +.+      ..||.++..                          ...
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~-~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g  135 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--K-FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG  135 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHc--C-CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence            557788899999 9999999999999653  1 223      444444310                          012


Q ss_pred             chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368           96 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus        96 ~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      .+...+|+.+. |+++++++.++...+...|.++.+++.+++
T Consensus       136 ~v~~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       136 AVKNAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             hHHHhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            45568899888 556467777666677788999999887743

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=96.13  E-value=0.018  Score=43.28  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=36.9

Q ss_pred             CCCccEEEEEee-C-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc
Q 021368           48 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE   91 (313)
Q Consensus        48 ~~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~   91 (313)
                      .+++.+|.||.. | +.|....+.|.++..+++. .+.|+.|..+..
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~   70 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP   70 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence            446788889999 8 9999999999999999985 388888887654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.11  E-value=0.0095  Score=41.35  Aligned_cols=54  Identities=11%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ccCCCCcCceEEEEeCCC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------~~~~v~~~P~i~~~~~g~  243 (313)
                      +++|+++||+.|..+...+.++..      .+.+..++...+..       ...+..++|.+++  +|.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            578999999999999999988744      24555566554421       2346778899744  444

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.09  E-value=0.065  Score=39.07  Aligned_cols=97  Identities=11%  Similarity=0.154  Sum_probs=61.4

Q ss_pred             eEEE-cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEe
Q 021368          162 VKIV-VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP  240 (313)
Q Consensus       162 v~~l-~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~  240 (313)
                      ++.+ +.+.++.++......++|-|+...-.   .....|.++|..++.  .+.|+... +......+++ ..|++.+|+
T Consensus         2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~-~~~~~~~~~~-~~~~i~l~~   74 (102)
T cd03066           2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP--YIKFFATF-DSKVAKKLGL-KMNEVDFYE   74 (102)
T ss_pred             ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc--CCEEEEEC-cHHHHHHcCC-CCCcEEEeC
Confidence            3445 33456776631455555555544322   566789999999987  56776433 2222244555 469999997


Q ss_pred             CCCCCcCceee-ccCcCHHHHHHHHHhc
Q 021368          241 AGNKSFDPINV-DVDRTVVALYKFLKKN  267 (313)
Q Consensus       241 ~g~~~~~~~~y-~g~~~~~~l~~fi~~~  267 (313)
                      ....  .++.| .|..+.+.|..||..+
T Consensus        75 ~~~e--~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          75 PFME--EPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCC--CCcccCCCCCCHHHHHHHHHHh
Confidence            6333  34579 7788999999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=96.06  E-value=0.061  Score=43.31  Aligned_cols=92  Identities=15%  Similarity=0.106  Sum_probs=60.9

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++..+|.|| ..| +.|....+.|.+++.+|.. .+.++.|.++...                         ....+.+.
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~  108 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD  108 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence            445666777 688 9999999999999999975 3666666654311                         12356677


Q ss_pred             hCCC----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          101 FGIT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       101 ~~v~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      ||+.    ++..|+.++++.+....+.+    ...++.++|.+.|...
T Consensus       109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8886    22347777887666444444    2235677788888664

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.06  E-value=0.018  Score=39.00  Aligned_cols=64  Identities=11%  Similarity=0.107  Sum_probs=43.2

Q ss_pred             EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCCCCcCceeeccCcCH
Q 021368          183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV  257 (313)
Q Consensus       183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~  257 (313)
                      .+|..++|+.|......+.+.        ++.+-.+|++.+..     ...+..++|.+++  +|..     .+ |+.+.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~-----~~-~G~~~   65 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL-----SW-SGFRP   65 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc-----EE-eccCH
Confidence            568889999999998888753        46677778776653     2347778999866  4432     23 33566


Q ss_pred             HHHHH
Q 021368          258 VALYK  262 (313)
Q Consensus       258 ~~l~~  262 (313)
                      +.|.+
T Consensus        66 ~~~~~   70 (72)
T TIGR02194        66 DKLKA   70 (72)
T ss_pred             HHHHh
Confidence            65543

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=95.91  E-value=0.026  Score=44.11  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCe---EEEEEEeCCCcc----------------------cccchhhhhC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK---LIFVYVQMDNED----------------------VGKPVSEYFG  102 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~---v~f~~vd~~~~~----------------------~~~~l~~~~~  102 (313)
                      ++.+.++|-+-| ++|+.+.|++.++.......   +-++.|..+.+.                      --.+++.+|+
T Consensus        33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~  112 (157)
T KOG2501|consen   33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE  112 (157)
T ss_pred             CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence            446667788888 99999999999999888875   666666654432                      0156778899


Q ss_pred             CCCCCCcEEEEEcCCC
Q 021368          103 ITGEAPKVLAYTGNDD  118 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~  118 (313)
                      |.+.  |++.+...++
T Consensus       113 v~~i--P~l~i~~~dG  126 (157)
T KOG2501|consen  113 VKGI--PALVILKPDG  126 (157)
T ss_pred             cCcC--ceeEEecCCC
Confidence            9988  8888877654

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.83  E-value=0.067  Score=40.36  Aligned_cols=75  Identities=20%  Similarity=0.333  Sum_probs=56.2

Q ss_pred             CcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce-EEEEeCC
Q 021368          167 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT-ILFFPAG  242 (313)
Q Consensus       167 ~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~-i~~~~~g  242 (313)
                      +-..++.++ ...+.++|-|...|-+.|.++-..+.+++.+.++  -..++.+|.+.-+.  +-|.+. -|. +.||-++
T Consensus         8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn   84 (133)
T PF02966_consen    8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN   84 (133)
T ss_dssp             HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred             cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence            345566665 4468899999999999999999999999999988  68889999997665  567777 674 5555344


Q ss_pred             CC
Q 021368          243 NK  244 (313)
Q Consensus       243 ~~  244 (313)
                      +.
T Consensus        85 kh   86 (133)
T PF02966_consen   85 KH   86 (133)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PTZ00256 glutathione peroxidase; Provisional

Probab=95.80  E-value=0.097  Score=42.64  Aligned_cols=41  Identities=15%  Similarity=0.106  Sum_probs=33.0

Q ss_pred             CCccE-EEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC
Q 021368           49 PIKNQ-LLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD   89 (313)
Q Consensus        49 ~~~~~-v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~   89 (313)
                      ++.++ +++++.| +.|....|.|.++.++|.+. +.|+.|+|+
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            33443 4468999 99999999999999999863 888888874

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.72  E-value=0.02  Score=39.90  Aligned_cols=79  Identities=11%  Similarity=0.122  Sum_probs=55.4

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHH
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV  258 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~  258 (313)
                      .+++|..+.|.-|..+...+..+...    ..+.+-.+|++.++.  .+|+. .+|.+.+=..+... ......+..+.+
T Consensus         1 ~l~l~~k~~C~LC~~a~~~L~~~~~~----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~-~~~~~~~~~d~~   74 (81)
T PF05768_consen    1 TLTLYTKPGCHLCDEAKEILEEVAAE----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFK-EQEELKWRFDEE   74 (81)
T ss_dssp             -EEEEE-SSSHHHHHHHHHHHHCCTT----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGC-TSEEEESSB-HH
T ss_pred             CEEEEcCCCCChHHHHHHHHHHHHhh----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccc-ccceeCCCCCHH
Confidence            36789999999999998888876432    258899999997776  67884 89997762211111 123677789999


Q ss_pred             HHHHHHH
Q 021368          259 ALYKFLK  265 (313)
Q Consensus       259 ~l~~fi~  265 (313)
                      .|.+||+
T Consensus        75 ~L~~~L~   81 (81)
T PF05768_consen   75 QLRAWLE   81 (81)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9999984

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.72  E-value=0.052  Score=44.78  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=23.0

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHH
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNK  202 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~  202 (313)
                      +.+..++.|..+.|++|+.+.+.+..
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh
Confidence            36789999999999999999988875

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=95.71  E-value=0.019  Score=38.94  Aligned_cols=49  Identities=16%  Similarity=0.210  Sum_probs=35.9

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~  238 (313)
                      ++.|+.+||+.|+.+...|.+.        ++.+..+|+.....  .    ..+-..+|.+++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i   57 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF   57 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5778999999999998888864        46666778876553  1    224567899865

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.66  E-value=0.044  Score=52.39  Aligned_cols=121  Identities=10%  Similarity=-0.030  Sum_probs=86.8

Q ss_pred             cccccCCCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCcc-EEEEEeeC-CchhhhhHHHHHHHHhccCeEEE
Q 021368            8 KISYFADGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF   83 (313)
Q Consensus         8 ~~~~y~~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~-~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f   83 (313)
                      ..+.| +|==.=+++..||..-  ....-..|+++..+.+-.-..+. +.+|+++. +.|......+.+++.... .|.+
T Consensus        73 ~~i~f-~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~  150 (517)
T PRK15317         73 TGVRF-AGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITH  150 (517)
T ss_pred             ceEEE-EecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceE
Confidence            35788 7766667777776533  22334456666655544333344 55688888 999999999999999766 4889


Q ss_pred             EEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368           84 VYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus        84 ~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      -.+|...   +++++++|++...  |++++ ++    ...+.|..+.+.|.+.+...
T Consensus       151 ~~id~~~---~~~~~~~~~v~~V--P~~~i-~~----~~~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        151 TMIDGAL---FQDEVEARNIMAV--PTVFL-NG----EEFGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             EEEEchh---CHhHHHhcCCccc--CEEEE-CC----cEEEecCCCHHHHHHHHhcc
Confidence            9999988   6799999999988  99954 32    23467888888887777653

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=95.65  E-value=0.18  Score=36.49  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=64.1

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcccccchh----hhhCCCCCCCcEEEEEcCCC--Ccee
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGITGEAPKVLAYTGNDD--AKKH  122 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~~~~l~----~~~~v~~~~~P~i~~~~~~~--~~~~  122 (313)
                      +++.|-... +.-.++.++++++|+....  .+.|+.||-++..   -+.    +-|||.-. .|.|.+.+-..  +.-+
T Consensus        23 ~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP---llv~yWektF~IDl~-~PqIGVV~vtdadSvW~   98 (120)
T cd03074          23 HIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFGIDLF-RPQIGVVNVTDADSVWM   98 (120)
T ss_pred             eEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc---hhhHHHHhhcCcccC-CCceeeEecccccceeE
Confidence            344454444 7889999999999998885  6999999999854   444    56788866 69988887544  3344


Q ss_pred             ccCCC---CCHHHHHHHHHHHh
Q 021368          123 ILDGE---LTLDKIKTFGEDFL  141 (313)
Q Consensus       123 ~~~g~---~~~~~i~~fi~~~~  141 (313)
                      .+.+.   .+.+.|..|+++.+
T Consensus        99 ~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          99 EMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             ecccccccCcHHHHHHHHHhhC
Confidence            45443   78999999998864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.60  E-value=0.022  Score=38.77  Aligned_cols=49  Identities=14%  Similarity=0.239  Sum_probs=34.8

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCC-cCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSD-GFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~v~-~~P~i~~  238 (313)
                      +++|..++|+.|..+...|.+.        ++.+-.+|++.+..  +.    .+.. ++|.+++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i   57 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI   57 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence            5678899999999998888763        45666677776533  22    3444 8898765

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=95.58  E-value=0.015  Score=40.20  Aligned_cols=49  Identities=10%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~v~~~P~i~~  238 (313)
                      +++|+.+||+.|..+...+.+.        ++.+-.+|++.+..  +.    .+..++|++++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i   55 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI   55 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence            3578899999999999888764        34555566665543  22    35678899855

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=95.51  E-value=0.037  Score=37.67  Aligned_cols=68  Identities=6%  Similarity=0.059  Sum_probs=43.5

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhh-----hCCCCCCCcEEEEEcCCCCceeccCC
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY-----FGITGEAPKVLAYTGNDDAKKHILDG  126 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~-----~~v~~~~~P~i~~~~~~~~~~~~~~g  126 (313)
                      +++|+++| ++|+++.+.|.+++.      .+..+|.++..   .....     +++...  |++ +++++.  .   -.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~---~~~~~~~~~~~~~~~v--P~i-~~~~g~--~---l~   64 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDE---GAADRVVSVNNGNMTV--PTV-KFADGS--F---LT   64 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCH---hHHHHHHHHhCCCcee--CEE-EECCCe--E---ec
Confidence            56789999 999999999887643      34567877633   33333     277777  998 455442  1   12


Q ss_pred             CCCHHHHHHHH
Q 021368          127 ELTLDKIKTFG  137 (313)
Q Consensus       127 ~~~~~~i~~fi  137 (313)
                      ..+...+...+
T Consensus        65 ~~~~~~~~~~l   75 (77)
T TIGR02200        65 NPSAAQVKAKL   75 (77)
T ss_pred             CCCHHHHHHHh
Confidence            45556665544

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK15000 peroxidase; Provisional

Probab=95.45  E-value=0.032  Score=46.15  Aligned_cols=90  Identities=8%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368          177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------  225 (313)
                      .++.++|+||.. ||+.|....+.|.++..+|+.. ++.+..+.++....                              
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia  111 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ  111 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence            468999999994 9999999999999999999754 46666666553210                              


Q ss_pred             ccCCCC------cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhc
Q 021368          226 HRAKSD------GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN  267 (313)
Q Consensus       226 ~~~~v~------~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~  267 (313)
                      ..|++.      ..|+.+++.....+.....+.  -.++.+++++.|...
T Consensus       112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            124554      578888886443331111121  146889999999764

>KOG3414 consensus Component of the U4/U6

Probab=95.43  E-value=0.17  Score=37.76  Aligned_cols=91  Identities=13%  Similarity=0.113  Sum_probs=66.8

Q ss_pred             ccEEE-EEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC-C-
Q 021368           51 KNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD-G-  126 (313)
Q Consensus        51 ~~~v~-f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~-g-  126 (313)
                      ..+|+ |=.+| +.|-.+-..+.++|.....-+.++-||.++   -+.+.+-|++..  ||++++|-+++.-...+. | 
T Consensus        24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide---V~~~~~~~~l~~--p~tvmfFfn~kHmkiD~gtgd   98 (142)
T KOG3414|consen   24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE---VPDFVKMYELYD--PPTVMFFFNNKHMKIDLGTGD   98 (142)
T ss_pred             eEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch---hhhhhhhhcccC--CceEEEEEcCceEEEeeCCCC
Confidence            34444 55566 899999999999999999988899999987   679999999974  488877766553333331 2 


Q ss_pred             -------CCCHHHHHHHHHHHhcCCCC
Q 021368          127 -------ELTLDKIKTFGEDFLEGKLK  146 (313)
Q Consensus       127 -------~~~~~~i~~fi~~~~~~~~~  146 (313)
                             -.+.+.+.+-++....|..+
T Consensus        99 n~Kin~~~~~kq~~Idiie~iyRga~K  125 (142)
T KOG3414|consen   99 NNKINFAFEDKQEFIDIIETIYRGARK  125 (142)
T ss_pred             CceEEEEeccHHHHHHHHHHHHHhhhc
Confidence                   14577788888777665553

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.37  E-value=0.03  Score=40.67  Aligned_cols=55  Identities=13%  Similarity=0.207  Sum_probs=35.7

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----cc----CCCCcCceEEEEeCCCC
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HR----AKSDGFPTILFFPAGNK  244 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~----~~v~~~P~i~~~~~g~~  244 (313)
                      .-++.|..+||++|..+...|.+.        ++.+..+|++..+.     ..    -+..++|.+++  +|..
T Consensus         8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~   71 (99)
T TIGR02189         8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKL   71 (99)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEE
Confidence            346779999999999998877765        23344556554432     11    24578899854  5544

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>TIGR02180 GRX_euk Glutaredoxin

Probab=95.34  E-value=0.035  Score=38.54  Aligned_cols=56  Identities=9%  Similarity=-0.021  Sum_probs=39.4

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc--ccchhhhhCCCCCCCcEEE
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV--GKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~--~~~l~~~~~v~~~~~P~i~  112 (313)
                      +++|+++| +.|.++.+.|.++.  ..+.+.+..+|.+....  ...+.+..|+...  |+++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v--P~v~   59 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV--PNIF   59 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC--CeEE
Confidence            36789999 99999999999887  44446667776654210  0125566788877  9983

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=95.26  E-value=0.035  Score=40.69  Aligned_cols=82  Identities=16%  Similarity=0.168  Sum_probs=53.5

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhH---HHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEP---TYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~---~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      ....++.++++.++.. ....+ .|.+..|..|.+...   ++-++.+.|.+  .+..+.+.-.....  .+|++..+|+
T Consensus        10 g~~~vd~~~ld~~l~~-~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa   85 (107)
T PF07449_consen   10 GWPRVDADTLDAFLAA-PGDAV-LFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA   85 (107)
T ss_dssp             TEEEE-CCCHHHHHHC-CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred             CCeeechhhHHHHHhC-CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence            4677899999999853 44444 455555555555555   56666666766  56666666222222  6899999999


Q ss_pred             EEEEeCCCCCc
Q 021368          236 ILFFPAGNKSF  246 (313)
Q Consensus       236 i~~~~~g~~~~  246 (313)
                      +++|++|....
T Consensus        86 Lvf~R~g~~lG   96 (107)
T PF07449_consen   86 LVFFRDGRYLG   96 (107)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCEEEE
Confidence            99999998764

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=95.25  E-value=0.091  Score=40.41  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=30.4

Q ss_pred             CCccEEEEEe-eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCC
Q 021368           49 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD   89 (313)
Q Consensus        49 ~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~   89 (313)
                      ++..+|.||. .| +.|....+.+.++..++.+ .+.++.|..+
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d   66 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD   66 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4466777774 66 8899999999999998874 3666666543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=95.23  E-value=0.043  Score=39.67  Aligned_cols=53  Identities=13%  Similarity=0.221  Sum_probs=35.4

Q ss_pred             CCcEEEEEeC----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEE
Q 021368          178 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF  238 (313)
Q Consensus       178 ~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~  238 (313)
                      ..+++|+-.+    +||++|..+...|...        ++.+..+|+..+..      ..-+-.++|.+++
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            4556665442    8999999998888775        34566677765543      1234568898865

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR03137 AhpC peroxiredoxin

Probab=95.21  E-value=0.16  Score=41.52  Aligned_cols=92  Identities=10%  Similarity=-0.027  Sum_probs=59.2

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc----------------------ccccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE----------------------DVGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~----------------------~~~~~l~~~~~v  103 (313)
                      ++..+|.|| +.| +.|....+.|.++..+|.+ .+.++.|.++..                      +....+++.||+
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv  110 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV  110 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence            445667788 888 9999999999999999864 355555554421                      013467788898


Q ss_pred             CC----CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          104 TG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       104 ~~----~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      ..    ...|+.++++.++...+.+    ...+..+++.+.|+..
T Consensus       111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~  155 (187)
T TIGR03137       111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA  155 (187)
T ss_pred             cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            62    1247777776655333332    1235788888777543

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PHA03050 glutaredoxin; Provisional

Probab=95.20  E-value=0.04  Score=40.70  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=34.4

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------ccCCCCcCceEEE
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTILF  238 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------~~~~v~~~P~i~~  238 (313)
                      -++.|..+||++|......|.+..-..     -.+..+|++....         +.-+-.++|.+++
T Consensus        14 ~V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050         14 KVTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            477899999999999988887763211     1344445554211         2235678999966

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=95.19  E-value=0.047  Score=42.31  Aligned_cols=57  Identities=11%  Similarity=0.044  Sum_probs=42.0

Q ss_pred             CCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           49 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        49 ~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ++..++.||..|  +.|....+.|.++..++.+ +.|+.|+.+.......+.+.+++..+
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~   84 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEGVDNV   84 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcCCCCc
Confidence            456777899988  7899999999999999976 78888888653213445555555433

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.04  E-value=0.053  Score=38.54  Aligned_cols=56  Identities=21%  Similarity=0.402  Sum_probs=36.2

Q ss_pred             CCcEEEEEeC----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEEEeCCC
Q 021368          178 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       178 ~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~~~~g~  243 (313)
                      +++++|+-.+    +||+.|......+...        ++.+..+|+..+..      ..-+-.++|.+++  +|.
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~   72 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE   72 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence            4566665443    7999999998888776        34556666655433      1235678899854  444

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=94.70  E-value=0.075  Score=42.59  Aligned_cols=55  Identities=13%  Similarity=0.139  Sum_probs=42.6

Q ss_pred             CCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368           49 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        49 ~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      ++..+|.||..|  +.|....+.|.+++.++.+ +.++.|.++....+..+++.+|+.
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~-~~vv~vs~D~~~~~~~f~~~~~~~  100 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDN-TVVLCISADLPFAQKRFCGAEGLE  100 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCC-cEEEEEeCCCHHHHHHHHHhCCCC
Confidence            446778899999  7899999999999999964 778888777532255677777764

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=94.69  E-value=0.15  Score=39.62  Aligned_cols=54  Identities=6%  Similarity=0.006  Sum_probs=38.0

Q ss_pred             CccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCC
Q 021368           50 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        50 ~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      ...+|+|| ..| +.|+...+.+.++..++.+ .+.++.|..+.......+++..++
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~   80 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL   80 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence            35556665 788 9999999999999999964 388888887764312223444444

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=94.67  E-value=0.027  Score=41.10  Aligned_cols=94  Identities=17%  Similarity=0.245  Sum_probs=52.1

Q ss_pred             CCcccccccCCCccEEEEEeeCCchh---hhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEEEE
Q 021368           39 RENAPSVFESPIKNQLLLFAVSNDSE---KLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        39 ~~~~~~~~~~~~~~~v~f~~~~~~c~---~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      .+.++.+...+....+++|.-...|.   .....|++......+.+.++++|.-+..+ ...++.+|||.-- .|.++++
T Consensus         7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He-SPQ~ili   85 (105)
T PF11009_consen    7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE-SPQVILI   85 (105)
T ss_dssp             HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEE
T ss_pred             HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC-CCcEEEE
Confidence            34566666665566777777665664   55556666666666669999999877532 4567799999866 7888888


Q ss_pred             cCCCCceeccCCCCCHHHH
Q 021368          115 GNDDAKKHILDGELTLDKI  133 (313)
Q Consensus       115 ~~~~~~~~~~~g~~~~~~i  133 (313)
                      ++|+.....-...++.+.|
T Consensus        86 ~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   86 KNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             ETTEEEEEEEGGG-SHHHH
T ss_pred             ECCEEEEECccccCCHHhc
Confidence            8876332222335666655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=94.65  E-value=0.074  Score=45.76  Aligned_cols=90  Identities=9%  Similarity=0.038  Sum_probs=58.7

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------------c
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------------H  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------------~  225 (313)
                      .++.++++|| +.||+.|....+.|.++..+|+.. ++.+..+.++...                              .
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia  175 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS  175 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence            3567777777 899999999999999999998754 3555555554410                              0


Q ss_pred             ccCCCC-----cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhc
Q 021368          226 HRAKSD-----GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN  267 (313)
Q Consensus       226 ~~~~v~-----~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~  267 (313)
                      ..|++.     ..|+.++......+.....+.  ...+.+++++-|...
T Consensus       176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            234543     479989986444331222232  256889999888655

>PRK13191 putative peroxiredoxin; Provisional

Probab=94.60  E-value=0.066  Score=44.85  Aligned_cols=89  Identities=6%  Similarity=0.058  Sum_probs=58.6

Q ss_pred             CCcEE-EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------cc
Q 021368          178 SKDVL-LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR  227 (313)
Q Consensus       178 ~k~~l-v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~~  227 (313)
                      ++.++ ++|++.||+.|....+.|.++...|+.. ++.+..+.++....                             ..
T Consensus        33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            45544 4788999999999999999999999754 45666666554321                             12


Q ss_pred             CCCC-------cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhc
Q 021368          228 AKSD-------GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN  267 (313)
Q Consensus       228 ~~v~-------~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~  267 (313)
                      |++.       ..|+.+++.....+.....|.  -.++.+++++.|...
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            2331       368888886544441111222  246899999999765

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=94.59  E-value=0.059  Score=44.70  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++.|++.||+.|....+.+.++...|++. ++.+..+.++.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~   69 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS   69 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence            4556889999999999999999999999754 46666666554

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=94.58  E-value=0.11  Score=36.59  Aligned_cols=36  Identities=28%  Similarity=0.573  Sum_probs=27.0

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEe
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD  219 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd  219 (313)
                      +.+|+++.|++|..+.+.+.++......  ++.+....
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~   36 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRP   36 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEec
Confidence            4689999999999999999999855444  44444443

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=94.54  E-value=0.096  Score=42.82  Aligned_cols=101  Identities=11%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             ceEEeCC-CcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           33 LVTIFTR-ENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        33 ~v~~lt~-~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      .|.+++. +.|-+.+...   ...+|.+|-+. ..|..+...+.=||.++.- ++|..+..+.    ....++|..... 
T Consensus       139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~----~gas~~F~~n~l-  212 (273)
T KOG3171|consen  139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN----TGASDRFSLNVL-  212 (273)
T ss_pred             eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc----ccchhhhcccCC-
Confidence            6777765 3344444332   23345689998 9999999999999999998 9999998874    466788988888 


Q ss_pred             CcEEEEEcCCCCc--eec----cCCCCCHHHHHHHHHHH
Q 021368          108 PKVLAYTGNDDAK--KHI----LDGELTLDKIKTFGEDF  140 (313)
Q Consensus       108 ~P~i~~~~~~~~~--~~~----~~g~~~~~~i~~fi~~~  140 (313)
                       |+++||.+|...  ...    +..+.....+..|+.++
T Consensus       213 -P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  213 -PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             -ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence             999999988621  111    12234555666666664

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=94.51  E-value=0.3  Score=39.96  Aligned_cols=92  Identities=9%  Similarity=-0.068  Sum_probs=61.4

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc----------------------cccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~----------------------~~~~l~~~~~v  103 (313)
                      ++..++.|| +.| +.|....+.|.++..+|.+ .+.++.|..+...                      .+..+++.||+
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv  110 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence            345566677 788 9999999999999999964 2555555544311                      13477788888


Q ss_pred             C----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          104 T----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       104 ~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      .    +...|+.++++.++...+.+    ...++.+++.+.+..+
T Consensus       111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            4    22237777887665333332    3347899999888665

>PRK13599 putative peroxiredoxin; Provisional

Probab=94.43  E-value=0.084  Score=44.21  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=59.3

Q ss_pred             CCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------cc
Q 021368          178 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR  227 (313)
Q Consensus       178 ~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~~  227 (313)
                      ++. +|+.|++.||+.|...++.|.++..+|+.. ++.+..+.++....                             ..
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            454 467889999999999999999999999754 45555565554210                             22


Q ss_pred             CCC-------CcCceEEEEeCCCCCcCceeecc--CcCHHHHHHHHHhc
Q 021368          228 AKS-------DGFPTILFFPAGNKSFDPINVDV--DRTVVALYKFLKKN  267 (313)
Q Consensus       228 ~~v-------~~~P~i~~~~~g~~~~~~~~y~g--~~~~~~l~~fi~~~  267 (313)
                      |++       ...|+++++.....+.....|..  .++.+++++.|...
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            344       25799999965444412222322  46789999999764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.41  E-value=0.2  Score=47.87  Aligned_cols=122  Identities=9%  Similarity=0.014  Sum_probs=86.8

Q ss_pred             cccccCCCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCcc-EEEEEeeC-CchhhhhHHHHHHHHhccCeEEE
Q 021368            8 KISYFADGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF   83 (313)
Q Consensus         8 ~~~~y~~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~-~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f   83 (313)
                      ..+.| +|==.=+++..||..-  ....-..|+++..+.+-.-..+. +-+|+++. +.|......+.+++..... |..
T Consensus        74 ~~i~f-~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~-i~~  151 (515)
T TIGR03140        74 TGIRF-AGIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN-ISH  151 (515)
T ss_pred             cceEE-EecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-ceE
Confidence            45788 7765566677776532  22234566666655554333344 55677888 9999999999999999885 888


Q ss_pred             EEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368           84 VYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus        84 ~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      -.+|...   ++++.++|++...  |++++ ++.    ..+.|..+.+.+.+.+....
T Consensus       152 ~~id~~~---~~~~~~~~~v~~V--P~~~i-~~~----~~~~g~~~~~~~~~~l~~~~  199 (515)
T TIGR03140       152 TMIDGAL---FQDEVEALGIQGV--PAVFL-NGE----EFHNGRMDLAELLEKLEETA  199 (515)
T ss_pred             EEEEchh---CHHHHHhcCCccc--CEEEE-CCc----EEEecCCCHHHHHHHHhhcc
Confidence            8899988   6799999999988  99955 322    34678888888877776553

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=94.40  E-value=0.057  Score=41.28  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=38.7

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhh---hCCCCCCCcEEEEEcCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY---FGITGEAPKVLAYTGND  117 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~---~~v~~~~~P~i~~~~~~  117 (313)
                      ..+++|..+| ++|....|.+.++|+...+ +.+-.+--++   +.++.++   .|.+..  |++++++.+
T Consensus        43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~---~~el~~~~lt~g~~~I--P~~I~~d~~  107 (129)
T PF14595_consen   43 YNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDE---NKELMDQYLTNGGRSI--PTFIFLDKD  107 (129)
T ss_dssp             EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHH---HHHHTTTTTT-SS--S--SEEEEE-TT
T ss_pred             cEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecC---ChhHHHHHHhCCCeec--CEEEEEcCC
Confidence            4566788899 9999999999999998765 4444443333   4455544   466666  999999765

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=94.16  E-value=0.36  Score=35.55  Aligned_cols=94  Identities=13%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             CcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCC---
Q 021368          167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGN---  243 (313)
Q Consensus       167 ~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~---  243 (313)
                      .+.+.+++....+.++|-|+...-+   .....|.++|..++.  .+.|+.... ......+++. .|.+++|+...   
T Consensus         8 ~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~~-~~~~~~~~~~-~~~vvl~rp~~~~~   80 (107)
T cd03068           8 LKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTFD-SEIFKSLKVS-PGQLVVFQPEKFQS   80 (107)
T ss_pred             HHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEECh-HHHHHhcCCC-CCceEEECcHHHhh
Confidence            3456666644425566655554322   567789999999987  577765432 2222455654 57777774321   


Q ss_pred             -CCcCceeeccC-cCHHH-HHHHHHhc
Q 021368          244 -KSFDPINVDVD-RTVVA-LYKFLKKN  267 (313)
Q Consensus       244 -~~~~~~~y~g~-~~~~~-l~~fi~~~  267 (313)
                       .-.....|.|. .+.+. |.+||++|
T Consensus        81 k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          81 KYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             hcCcceeeeeccccchHHHHHHHHhcC
Confidence             11234578887 67656 99999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PRK10638 glutaredoxin 3; Provisional

Probab=94.15  E-value=0.087  Score=36.73  Aligned_cols=49  Identities=12%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~  238 (313)
                      +++|..+||++|..+...+.+.        ++.+..+|++.+..      +..+...+|++++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5678889999999998888764        35556677766542      1235568898855

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=94.15  E-value=0.38  Score=41.29  Aligned_cols=29  Identities=14%  Similarity=0.333  Sum_probs=23.9

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHH
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAK  205 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~  205 (313)
                      +.+.+++.|..+.|++|+.+...+..+..
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~  144 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVD  144 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence            45678999999999999999888766543

>PRK13189 peroxiredoxin; Provisional

Probab=94.05  E-value=0.1  Score=44.01  Aligned_cols=89  Identities=12%  Similarity=0.098  Sum_probs=57.6

Q ss_pred             CCCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------c
Q 021368          177 ESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------H  226 (313)
Q Consensus       177 ~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~  226 (313)
                      .++. +|++|++.||+.|....+.|.++..+|+.. ++.+..+.++....                             .
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~  112 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK  112 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence            3554 455778999999999999999999998753 45555555443110                             2


Q ss_pred             cCCCC-------cCceEEEEeCCCCCcCceee-c--cCcCHHHHHHHHHhc
Q 021368          227 RAKSD-------GFPTILFFPAGNKSFDPINV-D--VDRTVVALYKFLKKN  267 (313)
Q Consensus       227 ~~~v~-------~~P~i~~~~~g~~~~~~~~y-~--g~~~~~~l~~fi~~~  267 (313)
                      .|++.       ..|+.++......+ +.+.+ .  ..++.+++++.|...
T Consensus       113 ~ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        113 KLGMISPGKGTNTVRAVFIIDPKGII-RAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             HhCCCccccCCCceeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence            33432       46888888644444 22222 2  356788999999765

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=94.00  E-value=0.12  Score=40.19  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=27.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR  208 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~  208 (313)
                      +.+.+++.|+.++|++|..+.+.+..+...+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            35778999999999999999999998876653

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=93.98  E-value=0.031  Score=48.36  Aligned_cols=85  Identities=15%  Similarity=0.307  Sum_probs=65.9

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCcCceEEEEeCCCCCcCceeeccC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVD  254 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~v~~~P~i~~~~~g~~~~~~~~y~g~  254 (313)
                      ..++-+.||++||+..+...+.+.-.+..|....+..   ++-.....   .++++.+.|++.+....-..    +|-|.
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~----~~~~~  148 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYGIHSEPSNLMLNQTCPA----SYRGE  148 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccccccCCcceeeccccch----hhccc
Confidence            4578899999999999999999999998887532222   32222222   68899999999997655443    89999


Q ss_pred             cCHHHHHHHHHhcCC
Q 021368          255 RTVVALYKFLKKNAS  269 (313)
Q Consensus       255 ~~~~~l~~fi~~~~~  269 (313)
                      .+..+|..|..+.++
T Consensus       149 r~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  149 RDLASLVNFYTEITP  163 (319)
T ss_pred             ccHHHHHHHHHhhcc
Confidence            999999999999886

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=93.87  E-value=0.13  Score=42.45  Aligned_cols=90  Identities=11%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             CCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------c
Q 021368          178 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H  226 (313)
Q Consensus       178 ~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------~  226 (313)
                      ++.++|+||. .||..|......+.++..+|+.. ++.+..++++....                              .
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            5788889995 78999988888999999998764 56666666553221                              1


Q ss_pred             cCCCC------cCceEEEEeCCCCCcCceee--ccCcCHHHHHHHHHhcC
Q 021368          227 RAKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNA  268 (313)
Q Consensus       227 ~~~v~------~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~  268 (313)
                      .|++.      .+|+.+++.....+.....+  .-.++.+++++.|...-
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~  164 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ  164 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence            23443      35788888644433111111  12457788888886553

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=93.86  E-value=0.46  Score=39.92  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=43.1

Q ss_pred             CCCCeEEEcCcChHHHh--hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC
Q 021368          158 NDGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV  210 (313)
Q Consensus       158 ~~~~v~~l~~~~f~~~l--~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~  210 (313)
                      ++..|..+++.....++  ...++|.+|.|.+-.|++-..-...|++++++|.+.
T Consensus        80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~  134 (237)
T PF00837_consen   80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV  134 (237)
T ss_pred             CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence            45778888887743333  256899999999999999999999999999999874

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK10824 glutaredoxin-4; Provisional

Probab=93.82  E-value=0.12  Score=38.57  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=34.9

Q ss_pred             CCcEEEEEeC----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCcCceEEEEeCCCCC
Q 021368          178 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGNKS  245 (313)
Q Consensus       178 ~k~~lv~fy~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v~~~P~i~~~~~g~~~  245 (313)
                      ..+++|+--+    |||++|......|..+.        +.+..+|+..+..  .    .-+-..+|.|++  +|..+
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~I   81 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELV   81 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence            4556665443    69999999998888763        2333345554432  1    124567788777  55543

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.13  Score=35.68  Aligned_cols=49  Identities=16%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--c-----ccC-CCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----HRA-KSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--~-----~~~-~v~~~P~i~~  238 (313)
                      ++.|..++|++|......+.+.        ++.+..++++...  .     ... +..++|.|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            5678889999999998887743        4566666666655  2     233 6789999888

>PRK15000 peroxidase; Provisional

Probab=93.75  E-value=0.44  Score=39.42  Aligned_cols=92  Identities=15%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             CCccEEEEEee-C-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++..++.||.. | +.|....+.|.+++.+|.. .+.++.|.++...                         ....+++.
T Consensus        34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~  113 (200)
T PRK15000         34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA  113 (200)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence            44556667774 5 8999999999999999985 3666666665321                         12356667


Q ss_pred             hCCCC----CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          101 FGITG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       101 ~~v~~----~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      ||+..    ...|+.++++.++...+.+    ...++.+++.+.+..+
T Consensus       114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            88761    1237777777655333332    2347888888888664

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=93.73  E-value=0.52  Score=36.93  Aligned_cols=43  Identities=5%  Similarity=0.090  Sum_probs=32.0

Q ss_pred             CCCccEEEEEeeC--CchhhhhHHHHHHHHhccC-eEEEEEEeCCC
Q 021368           48 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN   90 (313)
Q Consensus        48 ~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~   90 (313)
                      .++..+|.||..|  +.|....+.+.++..++.+ .+.|+.|..+.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~   74 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK   74 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3446777788765  7799999999999999875 36677776543

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=93.71  E-value=0.66  Score=35.10  Aligned_cols=88  Identities=8%  Similarity=0.090  Sum_probs=61.9

Q ss_pred             ccEEE-EEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCC--------c
Q 021368           51 KNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA--------K  120 (313)
Q Consensus        51 ~~~v~-f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~--------~  120 (313)
                      ..+|+ |=.+| +.|-++-..+.++|.+.+.-..++.||.++   -+.+.+-|.+.  .|-+++||-.++.        .
T Consensus        21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~---Vpdfn~~yel~--dP~tvmFF~rnkhm~vD~Gtgn   95 (133)
T PF02966_consen   21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE---VPDFNQMYELY--DPCTVMFFFRNKHMMVDFGTGN   95 (133)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---THCCHHHTTS---SSEEEEEEETTEEEEEESSSSS
T ss_pred             eEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc---chhhhcccccC--CCeEEEEEecCeEEEEEecCCC
Confidence            34444 55566 899999999999999999999999999998   67899999997  4567777733332        2


Q ss_pred             eeccCCC-CCHHHHHHHHHHHhcC
Q 021368          121 KHILDGE-LTLDKIKTFGEDFLEG  143 (313)
Q Consensus       121 ~~~~~g~-~~~~~i~~fi~~~~~~  143 (313)
                      ..++.+. .+.+++..-++....|
T Consensus        96 nnKin~~~~~kqe~iDiie~iyrg  119 (133)
T PF02966_consen   96 NNKINWAFEDKQEFIDIIETIYRG  119 (133)
T ss_dssp             SSSBCS--SCHHHHHHHHHHHHHH
T ss_pred             ccEEEEEcCcHHHHHHHHHHHHHH
Confidence            2233333 3577887777766543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=93.58  E-value=0.14  Score=35.57  Aligned_cols=77  Identities=19%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             EEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC-CceeccCCCCCH
Q 021368           54 LLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHILDGELTL  130 (313)
Q Consensus        54 v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~~~~~g~~~~  130 (313)
                      |.||+..  +-|..+...+.+++....  +.+-.||.++   ++.+..+||. ..  |.+.+-+..+ .......+..+.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~---d~~l~~~Y~~-~I--PVl~~~~~~~~~~~~~~~~~~d~   73 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDE---DPELFEKYGY-RI--PVLHIDGIRQFKEQEELKWRFDE   73 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTT---THHHHHHSCT-ST--SEEEETT-GGGCTSEEEESSB-H
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCC---CHHHHHHhcC-CC--CEEEEcCcccccccceeCCCCCH
Confidence            3455544  789999999998766655  8888999987   5689999997 45  9986644211 112334667899


Q ss_pred             HHHHHHHH
Q 021368          131 DKIKTFGE  138 (313)
Q Consensus       131 ~~i~~fi~  138 (313)
                      +.|.+|+.
T Consensus        74 ~~L~~~L~   81 (81)
T PF05768_consen   74 EQLRAWLE   81 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99998874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=93.46  E-value=0.16  Score=37.10  Aligned_cols=77  Identities=14%  Similarity=0.180  Sum_probs=52.5

Q ss_pred             CcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcC-ceEEE
Q 021368          167 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGF-PTILF  238 (313)
Q Consensus       167 ~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~-P~i~~  238 (313)
                      .+.+++++.. ..++++|+=.++.|+-.......|++......+  .+.++.+|+-....      ..++|..- |.+++
T Consensus         7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il   84 (105)
T PF11009_consen    7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL   84 (105)
T ss_dssp             HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred             HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence            3566676643 367888888999999998888888888887765  48888899887654      57888754 99999


Q ss_pred             EeCCCCC
Q 021368          239 FPAGNKS  245 (313)
Q Consensus       239 ~~~g~~~  245 (313)
                      +++|..+
T Consensus        85 i~~g~~v   91 (105)
T PF11009_consen   85 IKNGKVV   91 (105)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            9999874

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=93.29  E-value=0.51  Score=36.60  Aligned_cols=41  Identities=15%  Similarity=0.151  Sum_probs=32.1

Q ss_pred             CccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCC
Q 021368           50 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN   90 (313)
Q Consensus        50 ~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~   90 (313)
                      ...+|.|| +.| +.|....+.+.++..++.+ .+.++.|..+.
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~   72 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS   72 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence            45566677 788 9999999999999999974 47777776544

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=93.23  E-value=0.25  Score=34.55  Aligned_cols=77  Identities=8%  Similarity=0.106  Sum_probs=51.7

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhC--CCCCCCcEEEEEcCCCCceeccCCCC
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFG--ITGEAPKVLAYTGNDDAKKHILDGEL  128 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~--v~~~~~P~i~~~~~~~~~~~~~~g~~  128 (313)
                      +++|..+| +.|.++...|++++.++.+ +.+..+|.+.... ..++....|  +..+  |+++ +++.   .+     -
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~v--P~if-i~g~---~i-----g   70 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETV--PQIF-VDQK---HI-----G   70 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcC--CEEE-ECCE---EE-----c
Confidence            55677788 9999999999999988766 8888888876310 123444444  3556  9984 4321   11     2


Q ss_pred             CHHHHHHHHHHHh
Q 021368          129 TLDKIKTFGEDFL  141 (313)
Q Consensus       129 ~~~~i~~fi~~~~  141 (313)
                      ..++|.+++++.+
T Consensus        71 g~~~~~~~~~~~~   83 (85)
T PRK11200         71 GCTDFEAYVKENL   83 (85)
T ss_pred             CHHHHHHHHHHhc
Confidence            4577777777654

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=92.77  E-value=0.61  Score=34.29  Aligned_cols=89  Identities=15%  Similarity=0.211  Sum_probs=56.3

Q ss_pred             CcccccccCC-CccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC
Q 021368           40 ENAPSVFESP-IKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD  118 (313)
Q Consensus        40 ~~~~~~~~~~-~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~  118 (313)
                      +.++.+.... ...+|-||.....  .....|.++|..+.....|+.....      .+...+++..   |.++++++..
T Consensus         9 ~ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~---~~vvl~rp~~   77 (107)
T cd03068           9 KQVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP---GQLVVFQPEK   77 (107)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC---CceEEECcHH
Confidence            3355555554 4556667766421  4667788999999887888775542      5667788752   4455664322


Q ss_pred             ------CceeccCCC-CCHHH-HHHHHHH
Q 021368          119 ------AKKHILDGE-LTLDK-IKTFGED  139 (313)
Q Consensus       119 ------~~~~~~~g~-~~~~~-i~~fi~~  139 (313)
                            .....|.|. .+.++ |.+|+.+
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence                  223446776 56666 9999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=92.71  E-value=2.7  Score=30.58  Aligned_cols=103  Identities=14%  Similarity=0.053  Sum_probs=75.0

Q ss_pred             EEEcCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-cCc
Q 021368          163 KIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFP  234 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~-~~P  234 (313)
                      +.++.+++.+...+. ....++.|--+--+.-.++.++++++|+....++++.|+-||-+..+.      +.|+|. .-|
T Consensus         4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P   83 (120)
T cd03074           4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP   83 (120)
T ss_pred             hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence            456667777766433 355677777777777889999999999999988899999999998875      345553 349


Q ss_pred             eEEEEeCCCCCcCceeec--cC---cCHHHHHHHHHhc
Q 021368          235 TILFFPAGNKSFDPINVD--VD---RTVVALYKFLKKN  267 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~--g~---~~~~~l~~fi~~~  267 (313)
                      .+-+..-...  ..+-|.  +.   .+++.|..||...
T Consensus        84 qIGVV~vtda--dSvW~~m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074          84 QIGVVNVTDA--DSVWMEMDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             ceeeEecccc--cceeEecccccccCcHHHHHHHHHhh
Confidence            9888765444  233333  33   5789999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=92.43  E-value=0.39  Score=37.76  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=35.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  220 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~  220 (313)
                      +.+.+++.|+...|++|..+.+.+.++...+-+...+.+...+.
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            45778999999999999999999999998883333677777765

...

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=92.22  E-value=0.28  Score=39.36  Aligned_cols=42  Identities=26%  Similarity=0.492  Sum_probs=34.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  220 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~  220 (313)
                      +.+..++.|+...|++|..+.+.+..+..++.+  .+.+..+..
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCC
Confidence            568899999999999999999999999888754  455554443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK13190 putative peroxiredoxin; Provisional

Probab=92.06  E-value=0.89  Score=37.63  Aligned_cols=87  Identities=11%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc------------------------ccccchhhhhCCCC----
Q 021368           56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------------------------DVGKPVSEYFGITG----  105 (313)
Q Consensus        56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~------------------------~~~~~l~~~~~v~~----  105 (313)
                      |.+.| +.|....+.|.++..+|.. .+.++.|.++..                        +....+++.||+..    
T Consensus        35 ~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g  114 (202)
T PRK13190         35 HPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSG  114 (202)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCC
Confidence            56777 9999999999999999974 255666655421                        01356777888841    


Q ss_pred             CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHHhc
Q 021368          106 EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~~  142 (313)
                      ...|+.++++.++...+.    ..+.++.+++.+.+..+..
T Consensus       115 ~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~  155 (202)
T PRK13190        115 ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV  155 (202)
T ss_pred             cEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence            123888888766533322    2456899999998887643

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=91.98  E-value=0.39  Score=36.93  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=35.0

Q ss_pred             CCCccEEEEEeeC-Cc-hhhhhHHHHHHHHhccC----eEEEEEEeCCC
Q 021368           48 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG----KLIFVYVQMDN   90 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~-c~~~~~~~~~~a~~~~~----~v~f~~vd~~~   90 (313)
                      .+...+|.|+..| +. |....+.+.++..++.+    ++.++.|.++.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            3456777899999 76 99999999999999976    38888887654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=91.95  E-value=1.4  Score=38.01  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             ccEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc-----------------c--------cccchhhhhC
Q 021368           51 KNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----------------D--------VGKPVSEYFG  102 (313)
Q Consensus        51 ~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~-----------------~--------~~~~l~~~~~  102 (313)
                      ..+++|| ..| +.|....+.|.++..+|.+. +.++.|.++..                 .        .+..+++.||
T Consensus       100 ~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayG  179 (261)
T PTZ00137        100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFG  179 (261)
T ss_pred             eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcC
Confidence            4555566 677 99999999999999999742 55555555431                 0        1356788899


Q ss_pred             CCC---CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHH
Q 021368          103 ITG---EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDF  140 (313)
Q Consensus       103 v~~---~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~  140 (313)
                      +..   ...|+.++++.++...+.    ....++.+++.+.+..+
T Consensus       180 v~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        180 LLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             CCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            852   224888788765533332    24457888888888765

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=91.74  E-value=0.69  Score=39.22  Aligned_cols=40  Identities=18%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368           94 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus        94 ~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +..+++++||+++  |+++ +.+|.    .+.|..+.+.|.+++.+.
T Consensus       191 ~~~la~~lgi~gT--Ptiv-~~~G~----~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        191 HYALGVQFGVQGT--PAIV-LSNGT----LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             hHHHHHHcCCccc--cEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence            6788999999999  9996 44443    347889999999998763

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=91.52  E-value=3.4  Score=29.58  Aligned_cols=75  Identities=11%  Similarity=0.068  Sum_probs=50.9

Q ss_pred             CCcE-EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368          178 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT  256 (313)
Q Consensus       178 ~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~  256 (313)
                      .+++ ++.|.... ..|..+...++++|..-   +++.+...+..         ...|++.+..+|..  ..++|.|-..
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~---------~~~P~~~i~~~~~~--~gIrF~GiP~   82 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDD---------ERKPSFSINRPGED--TGIRFAGIPM   82 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCC---------CCCCEEEEecCCCc--ccEEEEecCC
Confidence            4444 55565554 88988888888887653   24555433322         14799999877743  4679999888


Q ss_pred             HHHHHHHHHhc
Q 021368          257 VVALYKFLKKN  267 (313)
Q Consensus       257 ~~~l~~fi~~~  267 (313)
                      -+++..||...
T Consensus        83 GhEf~Slilai   93 (94)
T cd02974          83 GHEFTSLVLAL   93 (94)
T ss_pred             chhHHHHHHHh
Confidence            88888888653

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=91.36  E-value=1.3  Score=36.61  Aligned_cols=86  Identities=16%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc------------------------cccchhhhhCCCC----
Q 021368           56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG----  105 (313)
Q Consensus        56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~v~~----  105 (313)
                      |.++| +.|....+.|.+++.+|.+ .+.++.|.++...                        ....+++.||+..    
T Consensus        33 ~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~  112 (203)
T cd03016          33 HPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAG  112 (203)
T ss_pred             ecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCC
Confidence            55677 8999999999999999975 3667777665411                        1346778888862    


Q ss_pred             C--CCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHHh
Q 021368          106 E--APKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDFL  141 (313)
Q Consensus       106 ~--~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~  141 (313)
                      .  ..|..++++.++...+.+    ...++.+++.+.+..+-
T Consensus       113 ~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq  154 (203)
T cd03016         113 STLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ  154 (203)
T ss_pred             CCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            2  123566776655333332    22467888988887653

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=91.21  E-value=0.7  Score=30.53  Aligned_cols=53  Identities=13%  Similarity=0.166  Sum_probs=33.8

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccc-cchhhhhCCCCCCCcEEEE
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~i~~  113 (313)
                      +++|+++| +.|.++...+.+.     + +.+..+|.+..... ..+.+..++..+  |++.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-----~-i~~~~~~i~~~~~~~~~~~~~~~~~~v--P~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-----G-IPFEEVDVDEDPEALEELKKLNGYRSV--PVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-----C-CCeEEEeCCCCHHHHHHHHHHcCCccc--CEEEE
Confidence            45677888 9999998888763     3 56667777652211 122233366667  99855

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=0.82  Score=33.39  Aligned_cols=56  Identities=11%  Similarity=0.256  Sum_probs=37.0

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-----CCCCcCceEEEEeCCCC
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNK  244 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-----~~v~~~P~i~~~~~g~~  244 (313)
                      -+|.|..+||+.|..+..+|..    +..  ...+..+|-..+..  +.     -+-.++|.+++  +|+.
T Consensus        15 ~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~   77 (104)
T KOG1752|consen   15 PVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF   77 (104)
T ss_pred             CEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence            4556889999999998888877    333  46777777664432  11     13348898877  4443

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=89.75  E-value=1.1  Score=36.57  Aligned_cols=59  Identities=10%  Similarity=0.084  Sum_probs=42.8

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc--------ccccchhh-hhCCCCCCCcEE
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE--------DVGKPVSE-YFGITGEAPKVL  111 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~--------~~~~~l~~-~~~v~~~~~P~i  111 (313)
                      ++..+|.|++.| +.|.+ .+.|.++.++|.+ .+.+..+.|+..        .....+|+ .+|+. +  |.+
T Consensus        25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-F--pv~   94 (183)
T PRK10606         25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-F--PMF   94 (183)
T ss_pred             CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-c--eeE
Confidence            457788899999 88864 8899999999985 388999988531        11345565 57763 4  755

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=89.74  E-value=1.7  Score=37.38  Aligned_cols=41  Identities=10%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368           95 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus        95 ~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      ..+.+.+||+++  |++++-+++ +......|..+.+.|.+.+.
T Consensus       209 ~~l~~~lGv~GT--Paiv~~d~~-G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        209 QKLMDDLGANAT--PAIYYMDKD-GTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             HHHHHHcCCCCC--CEEEEECCC-CCEEEecCCCCHHHHHHHhC
Confidence            346678999999  999776543 33334578888888877653

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=89.48  E-value=1.5  Score=32.93  Aligned_cols=68  Identities=22%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             CCCccEEEEEe-------eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc----ccchhh--hhCCCCCCCcEEEE
Q 021368           48 SPIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV----GKPVSE--YFGITGEAPKVLAY  113 (313)
Q Consensus        48 ~~~~~~v~f~~-------~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~----~~~l~~--~~~v~~~~~P~i~~  113 (313)
                      .+.+.+|+|++       +| +.|....|.+.++-....+...|+.|...+...    +..+-.  .++|++.  ||++-
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I--PTLi~   95 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI--PTLIR   95 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SS--SEEEE
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec--ceEEE
Confidence            34466667774       46 889999999999888877778888887644210    122333  5899988  99988


Q ss_pred             EcCC
Q 021368          114 TGND  117 (313)
Q Consensus       114 ~~~~  117 (313)
                      ++++
T Consensus        96 ~~~~   99 (119)
T PF06110_consen   96 WETG   99 (119)
T ss_dssp             CTSS
T ss_pred             ECCC
Confidence            8665

; PDB: 1V9W_A 1WOU_A.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=89.05  E-value=0.82  Score=34.95  Aligned_cols=54  Identities=17%  Similarity=0.032  Sum_probs=37.8

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhh
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYF  101 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~  101 (313)
                      .+...+|.|| +.| +.|....+.+.++..++.. .+.|+.|..+.......+++.+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~   77 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE   77 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence            3456777777 567 8999999999999999853 4778888776532123444444

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=88.93  E-value=0.58  Score=43.30  Aligned_cols=49  Identities=10%  Similarity=0.183  Sum_probs=35.9

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c---------CCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R---------AKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~---------~~v~~~P~i~~  238 (313)
                      ++.|..+||++|..+...+.+.        ++.+..+|++....  .   +         .+..++|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            6789999999999998877775        46666777775542  1   1         25678899977

>PRK13189 peroxiredoxin; Provisional

Probab=88.84  E-value=2.5  Score=35.58  Aligned_cols=86  Identities=9%  Similarity=0.083  Sum_probs=56.1

Q ss_pred             EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc------------------------cccchhhhhCCCC----
Q 021368           56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG----  105 (313)
Q Consensus        56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~v~~----  105 (313)
                      |.++| +.|....+.|.+++.+|.. .+.++.|.++...                        ....+++.||+..    
T Consensus        43 ~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~  122 (222)
T PRK13189         43 HPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKG  122 (222)
T ss_pred             eCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccC
Confidence            34677 8999999999999999974 2555555554311                        1346678888762    


Q ss_pred             -CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHHh
Q 021368          106 -EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       106 -~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~  141 (313)
                       ...|+.++++.++...+.    ....++.+++.+.+..+.
T Consensus       123 ~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  163 (222)
T PRK13189        123 TNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ  163 (222)
T ss_pred             CCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence             123777777766533222    234578888888887653

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.72  E-value=1.9  Score=32.08  Aligned_cols=67  Identities=24%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             CCCccEEEEEe--------eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc----ccchhhhhCC-CCCCCcEEEE
Q 021368           48 SPIKNQLLLFA--------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV----GKPVSEYFGI-TGEAPKVLAY  113 (313)
Q Consensus        48 ~~~~~~v~f~~--------~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~----~~~l~~~~~v-~~~~~P~i~~  113 (313)
                      .++..+++|+.        +| +.|-+..|.+.++-+...+.+.|+.|+..+-..    +..+-...++ .+.  ||++=
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~v--PTLlr  101 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAV--PTLLR  101 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeec--ceeeE
Confidence            34445566653        56 899999999999999888899999999876321    3344455566 555  88766


Q ss_pred             EcC
Q 021368          114 TGN  116 (313)
Q Consensus       114 ~~~  116 (313)
                      +++
T Consensus       102 w~~  104 (128)
T KOG3425|consen  102 WKR  104 (128)
T ss_pred             EcC
Confidence            653

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=88.50  E-value=1.2  Score=30.61  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~  113 (313)
                      ..+++|..+| +.|.+....|.+.     + +.+..+|++.......+....|....  |.+.+
T Consensus         8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g~~~v--P~i~i   63 (79)
T TIGR02190         8 ESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTGATTV--PQVFI   63 (79)
T ss_pred             CCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHCCCCc--CeEEE
Confidence            4566777788 9999999999753     3 66667787764323455566688877  99843

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=88.41  E-value=0.38  Score=38.16  Aligned_cols=92  Identities=13%  Similarity=0.064  Sum_probs=59.4

Q ss_pred             HHHHHHhcCCCceEEeCC--CcccccccCCCccEEEEEeeC-CchhhhhH-HHH--HHHHhccCeEEEEEEeCCCccccc
Q 021368           22 IADFVFSNKLPLVTIFTR--ENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VFE--EAAKSFKGKLIFVYVQMDNEDVGK   95 (313)
Q Consensus        22 l~~fi~~~~~~~v~~lt~--~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~-~~~--~~a~~~~~~v~f~~vd~~~~~~~~   95 (313)
                      -.-|+..+..+.|....-  +.+...-+.+++.+|.++.+| +.|..+.. .|.  ++|..++..+.-++||.++   .+
T Consensus         8 ~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree---~P   84 (163)
T PF03190_consen    8 KSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE---RP   84 (163)
T ss_dssp             --HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----H
T ss_pred             CCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc---Cc
Confidence            345778887777766554  446666667778888899999 88998875 443  4888888888888999887   56


Q ss_pred             chhhhh--------CCCCCCCcEEEEEcCCC
Q 021368           96 PVSEYF--------GITGEAPKVLAYTGNDD  118 (313)
Q Consensus        96 ~l~~~~--------~v~~~~~P~i~~~~~~~  118 (313)
                      .+-..|        |.-+.  |+.+|..++.
T Consensus        85 did~~y~~~~~~~~~~gGw--Pl~vfltPdg  113 (163)
T PF03190_consen   85 DIDKIYMNAVQAMSGSGGW--PLTVFLTPDG  113 (163)
T ss_dssp             HHHHHHHHHHHHHHS---S--SEEEEE-TTS
T ss_pred             cHHHHHHHHHHHhcCCCCC--CceEEECCCC
Confidence            777776        67677  9888888765

; PDB: 3IRA_A.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=88.15  E-value=1.4  Score=36.15  Aligned_cols=37  Identities=8%  Similarity=0.294  Sum_probs=27.3

Q ss_pred             ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368           94 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus        94 ~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +..+++.+||++.  |+++ +.+|.    .+.|..+.+.|.+++
T Consensus       161 ~~~l~~~~gi~gt--Ptii-~~~G~----~~~G~~~~~~l~~~L  197 (197)
T cd03020         161 NLALGRQLGVNGT--PTIV-LADGR----VVPGAPPAAQLEALL  197 (197)
T ss_pred             HHHHHHHcCCCcc--cEEE-ECCCe----EecCCCCHHHHHhhC
Confidence            4678889999999  9996 54443    257878888887663

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=88.09  E-value=1.5  Score=30.67  Aligned_cols=77  Identities=9%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-cccchhhhhCC--CCCCCcEEEEEcCCCCceeccCCCC
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGI--TGEAPKVLAYTGNDDAKKHILDGEL  128 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-~~~~l~~~~~v--~~~~~P~i~~~~~~~~~~~~~~g~~  128 (313)
                      +++|..+| +.|.++...|.++..++.+ +.+..+|.+... ....+....|-  ...  |.+ ++++.    + ..   
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tV--P~i-fi~g~----~-ig---   69 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETV--PQI-FVDEK----H-VG---   69 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCc--CeE-EECCE----E-ec---
Confidence            45566777 9999999999998877655 777888876421 01245555553  455  998 44321    1 12   


Q ss_pred             CHHHHHHHHHHHh
Q 021368          129 TLDKIKTFGEDFL  141 (313)
Q Consensus       129 ~~~~i~~fi~~~~  141 (313)
                      ..++|.+++++..
T Consensus        70 G~~dl~~~~~~~~   82 (86)
T TIGR02183        70 GCTDFEQLVKENF   82 (86)
T ss_pred             CHHHHHHHHHhcc
Confidence            4577778777753

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=87.91  E-value=7.3  Score=27.86  Aligned_cols=73  Identities=12%  Similarity=0.056  Sum_probs=50.9

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ++.+.+|.+. ..|+.+...++++|.--.. |.+...+..      .        ..  |++.+..++....++|.|-..
T Consensus        20 pV~l~~f~~~~~~~~e~~~ll~e~a~lSdk-I~~~~~~~~------~--------~~--P~~~i~~~~~~~gIrF~GiP~   82 (94)
T cd02974          20 PVELVASLDDSEKSAELLELLEEIASLSDK-ITLEEDNDD------E--------RK--PSFSINRPGEDTGIRFAGIPM   82 (94)
T ss_pred             CEEEEEEeCCCcchHHHHHHHHHHHHhCCc-eEEEEecCC------C--------CC--CEEEEecCCCcccEEEEecCC
Confidence            4445566665 8899999999998876544 665432221      1        34  888887766545678899888


Q ss_pred             HHHHHHHHHHH
Q 021368          130 LDKIKTFGEDF  140 (313)
Q Consensus       130 ~~~i~~fi~~~  140 (313)
                      -.++..||..+
T Consensus        83 GhEf~Slilai   93 (94)
T cd02974          83 GHEFTSLVLAL   93 (94)
T ss_pred             chhHHHHHHHh
Confidence            88888888654

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PRK13191 putative peroxiredoxin; Provisional

Probab=87.59  E-value=3  Score=34.88  Aligned_cols=85  Identities=12%  Similarity=0.081  Sum_probs=56.0

Q ss_pred             EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCccc------------------------ccchhhhhCCC-----
Q 021368           56 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV------------------------GKPVSEYFGIT-----  104 (313)
Q Consensus        56 f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~------------------------~~~l~~~~~v~-----  104 (313)
                      |.++| +.|....+.|.+++.+|.. .+.++.|.++....                        +..+++.||+.     
T Consensus        41 ~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~  120 (215)
T PRK13191         41 HPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESS  120 (215)
T ss_pred             eCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccC
Confidence            45666 8999999999999999974 26666666654221                        23556677774     


Q ss_pred             CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          105 GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      +...|+.++++.++...+.+    ...++.+++.+.+..+
T Consensus       121 ~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        121 TATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             CceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            12247777777665333322    2347899998888765

>PRK13599 putative peroxiredoxin; Provisional

Probab=87.15  E-value=4.2  Score=34.02  Aligned_cols=86  Identities=14%  Similarity=0.059  Sum_probs=57.2

Q ss_pred             EEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc------------------------cccchhhhhCCCC---
Q 021368           55 LLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG---  105 (313)
Q Consensus        55 ~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~v~~---  105 (313)
                      .|.++| +.|....+.|.++..+|.. .+.++.|.++.-.                        .+..+++.||+..   
T Consensus        35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~  114 (215)
T PRK13599         35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK  114 (215)
T ss_pred             EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCC
Confidence            356677 9999999999999999964 3666666665410                        1346778888741   


Q ss_pred             --CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHH
Q 021368          106 --EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDF  140 (313)
Q Consensus       106 --~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~  140 (313)
                        ...|+.++++.++...+.    ....+..++|.+.+...
T Consensus       115 ~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        115 GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             CCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence              123777788765533222    13347888898888764

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=86.38  E-value=4.9  Score=33.08  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=57.2

Q ss_pred             CCccEEEEEe-eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++..+++||. .| ..|....+.|.+++.+|.. .+.++.|.++...                         ....+++.
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~  115 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS  115 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence            3345555664 45 8999888999999999985 3677777766421                         12357788


Q ss_pred             hCCC----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          101 FGIT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       101 ~~v~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      ||+.    +...|+.++++.++...+..    ...++.+++.+.+...
T Consensus       116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            8885    22236777777665322221    2235666666666544

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=86.14  E-value=1.3  Score=28.38  Aligned_cols=52  Identities=12%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccc-cchhhhhCCCCCCCcEEEE
Q 021368           54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~i~~  113 (313)
                      ++|..++ +.|..+...|++..      +.+..+|.+..... ..+.+..|...+  |++++
T Consensus         2 ~vy~~~~C~~C~~~~~~L~~~~------i~y~~~dv~~~~~~~~~l~~~~g~~~~--P~v~i   55 (60)
T PF00462_consen    2 VVYTKPGCPYCKKAKEFLDEKG------IPYEEVDVDEDEEAREELKELSGVRTV--PQVFI   55 (60)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTT------BEEEEEEGGGSHHHHHHHHHHHSSSSS--SEEEE
T ss_pred             EEEEcCCCcCHHHHHHHHHHcC------CeeeEcccccchhHHHHHHHHcCCCcc--CEEEE
Confidence            4566667 99999999985432      66778888774212 333344488888  99954

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=85.79  E-value=1.2  Score=37.06  Aligned_cols=40  Identities=28%  Similarity=0.624  Sum_probs=30.5

Q ss_pred             CCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEe
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMD  219 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd  219 (313)
                      +++.+|.|++-.|++|..+.+.+   ..+.+.+.+  ++.+..+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~   79 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYH   79 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEec
Confidence            46779999999999999999866   677777765  44555444

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=85.27  E-value=1.9  Score=29.39  Aligned_cols=55  Identities=7%  Similarity=0.057  Sum_probs=36.7

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc--ccchhhhhCCCCCCCcEEEEE
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV--GKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~--~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      +++|+.+| +.|..+.+.|.++...    ..+..++......  ...+.+..|...+  |.+ ++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~--P~v-~~   59 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTV--PNV-FI   59 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCC--CeE-EE
Confidence            46677888 9999999999987763    4456666654210  0134455688777  987 44

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=85.16  E-value=3.9  Score=34.86  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEe
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP  240 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~  240 (313)
                      ...+++..+    +..++|+.+++..+.||+.|...+-.+..+-.+|..- .+....-|...      .-..+|++.|..
T Consensus        45 ~~~kvsn~d----~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~~d------~~pn~Ptl~F~~  113 (249)
T PF06053_consen   45 NFFKVSNQD----LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDPYD------NYPNTPTLIFNN  113 (249)
T ss_pred             ceeeecCcc----cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCccc------CCCCCCeEEEec
Confidence            344555443    3467899999999999999977776666666666553 33333333211      124678877764


Q ss_pred             C
Q 021368          241 A  241 (313)
Q Consensus       241 ~  241 (313)
                      -
T Consensus       114 ~  114 (249)
T PF06053_consen  114 Y  114 (249)
T ss_pred             C
Confidence            4

>PRK10329 glutaredoxin-like protein; Provisional

Probab=85.01  E-value=4.2  Score=28.08  Aligned_cols=75  Identities=12%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  131 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~  131 (313)
                      +.+|..++ +.|.+....|.+     .| |.|-.+|.+........++..|....  |++.+ ++   ..   -+....+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g~~~v--Pvv~i-~~---~~---~~Gf~~~   67 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQGFRQL--PVVIA-GD---LS---WSGFRPD   67 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcCCCCc--CEEEE-CC---EE---EecCCHH
Confidence            34455677 999999998865     34 78888898874312223344566666  99854 22   11   2257888


Q ss_pred             HHHHHHHHHhc
Q 021368          132 KIKTFGEDFLE  142 (313)
Q Consensus       132 ~i~~fi~~~~~  142 (313)
                      .|.+.+...+.
T Consensus        68 ~l~~~~~~~~~   78 (81)
T PRK10329         68 MINRLHPAPHA   78 (81)
T ss_pred             HHHHHHHhhhh
Confidence            88888877643

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=84.51  E-value=1.8  Score=33.82  Aligned_cols=49  Identities=6%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             EEEEeCC------CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCC----CcCceEEE
Q 021368          182 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKS----DGFPTILF  238 (313)
Q Consensus       182 lv~fy~~------~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~v----~~~P~i~~  238 (313)
                      ++.|.++      +|++|..+..+|...        .+.+-.+|++....  +    .++.    ..+|.+++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            4567777      899999998888765        46777888876543  1    1222    57888777

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=83.57  E-value=2  Score=28.04  Aligned_cols=52  Identities=8%  Similarity=0.091  Sum_probs=34.5

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCCCCCcEEE
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~i~  112 (313)
                      +++|.+++ +.|+.+...|.+..      +.+..+|...... ...+.+..|....  |++.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~--P~~~   55 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTV--PQIF   55 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCc--CEEE
Confidence            45667788 99999999988765      6677788876331 1223344566555  8873

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=83.34  E-value=1.1  Score=38.94  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE  127 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~  127 (313)
                      ...+-..||..| +..+...|.+.-.+..|.. +....++-..  --+.+...+|+++.  |++.+....  -+..|.|.
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~--~lpsv~s~~~~~~~--ps~~~~n~t--~~~~~~~~  148 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQ--ALPSVFSSYGIHSE--PSNLMLNQT--CPASYRGE  148 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHh--hcccchhccccccC--Ccceeeccc--cchhhccc
Confidence            445567799999 8788888898888888885 3333333222  14678899999999  998777543  36678999


Q ss_pred             CCHHHHHHHHHHHhc
Q 021368          128 LTLDKIKTFGEDFLE  142 (313)
Q Consensus       128 ~~~~~i~~fi~~~~~  142 (313)
                      ++..+|.+|..++++
T Consensus       149 r~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  149 RDLASLVNFYTEITP  163 (319)
T ss_pred             ccHHHHHHHHHhhcc
Confidence            999999999999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.75  E-value=37  Score=30.73  Aligned_cols=162  Identities=11%  Similarity=0.107  Sum_probs=101.6

Q ss_pred             CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368           61 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus        61 ~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      ...+++...+.++|..- +++.+-..+..              .+.  |.+.+-+.+......|-|-.--.++..++...
T Consensus        31 ~~s~~~~~ll~eia~~S-~kis~~~~~~~--------------~Rk--pSF~i~r~g~~~gv~FAglPlGHEftSlVLaL   93 (520)
T COG3634          31 EKSKEIKELLDEIASLS-DKISLEEDSDL--------------VRK--PSFSINRPGEDQGVRFAGLPLGHEFTSLVLAL   93 (520)
T ss_pred             cccHHHHHHHHHHHhhc-cceeeeecCcc--------------ccC--CceeecCCCcccceEEecCcccchHHHHHHHH
Confidence            56788888888888766 43655443111              123  88888887776677777766666666666554


Q ss_pred             hc--CCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEE
Q 021368          141 LE--GKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM  218 (313)
Q Consensus       141 ~~--~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v  218 (313)
                      +.  |+-                 -.+..+-+++.-.-++...+=-|++-.|..|...-..+.-++-.   ++++.-..+
T Consensus        94 lqv~G~p-----------------pk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvl---Np~I~H~~I  153 (520)
T COG3634          94 LQVGGHP-----------------PKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL---NPRIKHTAI  153 (520)
T ss_pred             HHhcCCC-----------------CchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc---CCCceeEEe
Confidence            42  211                 12333334443222345567777788888887666655555432   346777778


Q ss_pred             eCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          219 DGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       219 d~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      |......  ..-+|..+|++++  +|..     .=+|-++.++|+.-|..
T Consensus       154 dGa~Fq~Evear~IMaVPtvfl--nGe~-----fg~GRmtleeilaki~~  196 (520)
T COG3634         154 DGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKIDT  196 (520)
T ss_pred             cchhhHhHHHhccceecceEEE--cchh-----hcccceeHHHHHHHhcC
Confidence            8776554  4568999999887  5554     34567888888877755

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=82.41  E-value=11  Score=27.55  Aligned_cols=101  Identities=17%  Similarity=0.253  Sum_probs=57.8

Q ss_pred             EeCCCcccccccCCCccEEEEEeeC--CchhhhhHHHHHHHHhccC--------eEEEEEEeCCCcccccchhhhh-CCC
Q 021368           36 IFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--------KLIFVYVQMDNEDVGKPVSEYF-GIT  104 (313)
Q Consensus        36 ~lt~~~~~~~~~~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~--------~v~f~~vd~~~~~~~~~l~~~~-~v~  104 (313)
                      .|++.+...+-..  +.+|+|-...  +.-+...+.+..+|.+...        ......+..+++  -....+.| |+.
T Consensus         3 ~Lse~~a~~Ln~~--p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede--~tdsLRDf~nL~   78 (116)
T cd03071           3 ELSESNAVQLNEG--PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD--MTDSLRDYTNLP   78 (116)
T ss_pred             cccHHHHHhhcCC--ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch--HHHHHHHhcCCC
Confidence            3444444433222  4555555433  5677777888777765441        222223333331  22444444 555


Q ss_pred             CCCCcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHHh
Q 021368          105 GEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFL  141 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~~  141 (313)
                      .. -|.+++.+-.....|... ..+|.+.+.+|+.+++
T Consensus        79 d~-~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl  115 (116)
T cd03071          79 EA-APLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL  115 (116)
T ss_pred             cc-CceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence            33 588888876555555543 4689999999999986

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>PHA03075 glutaredoxin-like protein; Provisional

Probab=82.13  E-value=1.1  Score=32.90  Aligned_cols=29  Identities=21%  Similarity=0.502  Sum_probs=26.0

Q ss_pred             CcEEEEEeCCCCccchhhhHHHHHHHHHh
Q 021368          179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHL  207 (313)
Q Consensus       179 k~~lv~fy~~~C~~C~~~~~~~~~la~~~  207 (313)
                      |.++|.|..|.|+-|.....++.++.++|
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY   30 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY   30 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence            57899999999999999999998887765

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=81.98  E-value=2.7  Score=28.15  Aligned_cols=67  Identities=16%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             EEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHH
Q 021368           55 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKI  133 (313)
Q Consensus        55 ~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i  133 (313)
                      +|..++ +.|.+....|.+.     + +.|..+|.++...........|....  |++.+ +++.     .-+..+.+.|
T Consensus         3 ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~~di~~~~~~~~~~~~~g~~~v--P~v~~-~g~~-----~~~G~~~~~~   68 (72)
T TIGR02194         3 VYSKNNCVQCKMTKKALEEH-----G-IAFEEINIDEQPEAIDYVKAQGFRQV--PVIVA-DGDL-----SWSGFRPDKL   68 (72)
T ss_pred             EEeCCCCHHHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHcCCccc--CEEEE-CCCc-----EEeccCHHHH
Confidence            445566 9999999998752     3 67778888764312233334477767  99844 3221     2334666666


Q ss_pred             HH
Q 021368          134 KT  135 (313)
Q Consensus       134 ~~  135 (313)
                      .+
T Consensus        69 ~~   70 (72)
T TIGR02194        69 KA   70 (72)
T ss_pred             Hh
Confidence            54

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=81.75  E-value=5  Score=27.81  Aligned_cols=60  Identities=17%  Similarity=0.199  Sum_probs=42.7

Q ss_pred             EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-----------------------------ccchhhhhCC
Q 021368           54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-----------------------------GKPVSEYFGI  103 (313)
Q Consensus        54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-----------------------------~~~l~~~~~v  103 (313)
                      ++|+... ++|..+.+.+.++.....+++.+..+...-...                             ...+...+|+
T Consensus         2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~   81 (98)
T cd02972           2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV   81 (98)
T ss_pred             eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence            4566667 999999999999987777777777776533210                             1234567899


Q ss_pred             CCCCCcEEEEEc
Q 021368          104 TGEAPKVLAYTG  115 (313)
Q Consensus       104 ~~~~~P~i~~~~  115 (313)
                      .+.  |++++.+
T Consensus        82 ~g~--Pt~v~~~   91 (98)
T cd02972          82 TGT--PTFVVNG   91 (98)
T ss_pred             CCC--CEEEECC
Confidence            888  9996653

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=80.32  E-value=4.5  Score=26.91  Aligned_cols=68  Identities=9%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  131 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~  131 (313)
                      +++|..++ +.|.+....|.+.     + +.+..+|.+.......+....|...+  |.+ ++++.   .  +.   ..+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-----~-i~~~~~~v~~~~~~~~~~~~~g~~~v--P~i-fi~g~---~--ig---g~~   65 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-----G-ISYEEIPLGKDITGRSLRAVTGAMTV--PQV-FIDGE---L--IG---GSD   65 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----C-CCcEEEECCCChhHHHHHHHhCCCCc--CeE-EECCE---E--Ee---CHH
Confidence            45566677 9999999998853     3 66777787664312233344577777  998 44321   1  12   366


Q ss_pred             HHHHHH
Q 021368          132 KIKTFG  137 (313)
Q Consensus       132 ~i~~fi  137 (313)
                      +|.+|+
T Consensus        66 ~l~~~l   71 (72)
T cd03029          66 DLEKYF   71 (72)
T ss_pred             HHHHHh
Confidence            666664

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		3e-45
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		4e-33
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		8e-09
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-29
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		2e-25
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		2e-07
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		8e-25
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		9e-22
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		4e-21
2k18_A	228	Solution Structure Of Bb' Domains Of Human Protein		8e-17
3bj5_A	147	Alternative Conformations Of The X Region Of Human		6e-16
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		7e-12
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		6e-11
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		8e-11
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		1e-10
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		2e-10
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		9e-10
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		2e-09
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		2e-09
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		4e-09
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		4e-09
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		3e-08
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		2e-07
4f9z_D	227	Crystal Structure Of Human Erp27 Length = 227		2e-07
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		2e-06
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		3e-06
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		3e-06
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		5e-06
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		1e-05
3tco_A	109	Crystallographic And Spectroscopic Characterization		3e-05
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		3e-05
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		4e-05
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		5e-05
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		6e-05
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		6e-05
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		8e-05
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		9e-05
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		9e-05
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		1e-04
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		1e-04
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		1e-04
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		1e-04
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		1e-04
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		1e-04
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		1e-04
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		2e-04
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		2e-04
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		2e-04
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		2e-04
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		2e-04
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		2e-04
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		2e-04
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		2e-04
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		2e-04
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		2e-04
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		2e-04
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		3e-04
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		4e-04
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		5e-04
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		7e-04
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		7e-04
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		8e-04
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		8e-04

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/262 (39%), Positives = 154/262 (58%), Gaps = 9/262 (3%)
Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVF 70
           +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D +  L  F
Sbjct: 99  EGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYDGKLSNF 157
Query: 71  EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDGE-L 128
           + AA+SFKGK++F+++  D+ D  + + E+FG+  E  P V   T  ++  K+  + E L
Sbjct: 158 KTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEEL 216
Query: 129 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYA 187
           T ++I  F   FLEGK+KP   S  +PE  D   VK++VG NF+++  DE K+V +E YA
Sbjct: 217 TAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYA 276
Query: 188 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD 247
           PWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA      
Sbjct: 277 PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADR-T 335
Query: 248 PINVDVDRTVVALYKFLKKNAS 269
            I+ + +RT+    KFL+    
Sbjct: 336 VIDYNGERTLDGFKKFLESGGQ 357

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 9/182 (4%)
Query: 101 FGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPFFKSDPIP 155
           FG+    GE P V   T     +K ++  E + D   ++ F +D+ +G LK + KS+PIP
Sbjct: 290 FGLESTAGEIPVVAIRTAK--GEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIP 347
Query: 156 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 215
           E+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y +L + L    +IVI
Sbjct: 348 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVI 407
Query: 216 AKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 274
           AKMD T N+     +  GFPTI F PA NK  +P   +  R +     +L++ A+ P  I
Sbjct: 408 AKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREATNPPVI 466
Query: 275 QK 276
           Q+
Sbjct: 467 QE 468

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 161 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           DV  +  +NF+  + D      +L+E +APWCGH +   P Y   A  L+G+  + +AK+
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 219 DGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN---ASIPFK 273
           D T  TN  ++    G+PT+  F  G ++      D  RT   +   LKK    AS+P +
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAG---AYDGPRTADGIVSHLKKQAGPASVPLR 116
Query: 274 IQK 276
            ++
Sbjct: 117 TEE 119

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 141 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY 200
            +G LK + KS+PIPE+NDG VK+VV  NFDEIV +E+KDVL+E YAPWCGHC+  EP Y
Sbjct: 8   FDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKY 67
Query: 201 NKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 259
            +L + L    +IVIAKMD T N+     +  GFPTI F PA NK  +P   +  R +  
Sbjct: 68  KELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSD 126
Query: 260 LYKFLKKNAS 269
              +L++ A+
Sbjct: 127 FISYLQREAT 136

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 5   ETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSE 64
           + E + YF  G+ D S  A +V S  LPL  +F                       ND E
Sbjct: 216 QVEALPYF--GEIDGSVFAQYVESG-LPLGYLFY----------------------NDEE 250
Query: 65  KL---LPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK 121
           +L    P+F E AK  +G + FV   +D    G+       +  + P    +   +D K 
Sbjct: 251 ELEEYKPLFTELAKKNRGLMNFV--SIDARKFGRHAGN-LNMKEQFPLFAIHDMTEDLKY 307
Query: 122 HI----------LDGELTLDK--IKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNN 169
            +          L  ++ L+   I++  +DFL+G   P  KS  I E  D  V  +VG N
Sbjct: 308 GLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKN 367
Query: 170 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHHRA 228
            DEIV D  KDVL+  YAPWCGHC+   PTY +LA  +      ++IAK+D T N+    
Sbjct: 368 HDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGV 427
Query: 229 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
             +G+PTI+ +P G KS + +     R++ +L+ F+K+N 
Sbjct: 428 VIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENG 466

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 159 DGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
           D  V  +  ++F+E +  +S D VL E +APWCGHC+   P Y K A+ L    +I +A+
Sbjct: 13  DSAVVKLATDSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQ 69
Query: 218 MDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
           +D T N+    + +  GFP++  F   + + + I+ +  RT  A+ +F+ K + 
Sbjct: 70  IDCTENQDLCMEHNIPGFPSLKIFKNSDVN-NSIDYEGPRTAEAIVQFMIKQSQ 122

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
           + G VK+VVG  FD IV+D  KDVL+E YAPWCGHC+  EP Y  L K  +G   +VIAK
Sbjct: 5   SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64
Query: 218 MDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNASIPFKI 274
           MD T N+  + + K +GFPTI F P+G+K  +PI  +  +R +  L KF+ ++A+   + 
Sbjct: 65  MDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKRSRT 123
Query: 275 QKPTSAPKT 283
           ++  S P +
Sbjct: 124 KEELSGPSS 132

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 155 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---D 211
           P  ++G V +VV  N++EIVLD++KDVL+E YAPWCGHC+A  P Y +L          D
Sbjct: 2   PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 212 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
            +VIAK+D T N+    +  GFPTI  +PAG K   P+     RTV  L KF+ +N 
Sbjct: 62  RVVIAKVDATANDVPD-EIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENG 116

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
           + G VK++VG NF+++  DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAK
Sbjct: 5   SSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 64
Query: 218 MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
           MD T NE    K   FPT+ FFPA       I+ + +RT+    KFL+
Sbjct: 65  MDSTANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLE 111

>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein Disulfide Isomerase Length = 228

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF---AVSNDSEKLLPVF 70
           +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +VS D +  L  F
Sbjct: 88  EGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS-DYDGKLSNF 146
Query: 71  EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDG-EL 128
           + AA+SFKGK++F+++  D+ D  + + E+FG+   E P V   T  ++  K+  +  EL
Sbjct: 147 KTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEEL 205
Query: 129 TLDKIKTFGEDFLEGKLKPFFKS 151
           T ++I  F   FLEGK+KP   S
Sbjct: 206 TAERITEFCHRFLEGKIKPHLMS 228

>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein Disulphide- Isomerase Modulate Exposure Of The Substrate Binding B' Domain Length = 147

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 29  NKLPLVTIFTRENAPSVFESPIKNQLLLF--AVSNDSEKLLPVFEEAAKSFKGKLIFVYV 86
           N+LPLV  FT + AP +F   IK  +LLF     +D +  L  F+ AA+SFKGK++F ++
Sbjct: 11  NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 87  QMDNEDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGK 144
             D+ D  + + E+FG+   E P V   T  ++  K+  +  ELT ++I  F   FLEGK
Sbjct: 71  DSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 129
Query: 145 LKPFFKSDPIPETND 159
           +KP   S  +PE  D
Sbjct: 130 IKPHLMSQELPEDWD 144

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDG 220
           V ++   NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  L+  D  I +AK+D 
Sbjct: 19  VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 77
Query: 221 TTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRT 256
           T+     +K D  G+PTI     G      ++ D  RT
Sbjct: 78  TSASMLASKFDVSGYPTIKILKKGQA----VDYDGSRT 111

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 147 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
           P    D +    +  V ++   NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  
Sbjct: 2   PLGSEDDLEVKEENGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANI 60
Query: 207 LRGVD-SIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 243
           L+  D  I +AK+D T+     ++ D  G+PTI     G 
Sbjct: 61  LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ 100

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 155 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-I 213
           PE  D  V ++  +NF E  L   K +L+E YAPWCGHC+A  P Y K A  L+   S I
Sbjct: 3   PEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 214 VIAKMDGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
            +AK+D T  ++   +    G+PTI FF  G+ +  P      R    +  +LKK 
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKKR 115

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV--DSIVI 215
           + GDV  +  ++FD+ VLD     ++E YAPWCGHC+  EP +   A  ++      + +
Sbjct: 5   SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKL 64
Query: 216 AKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 256
           A +D T N+    R    GFPTI  F  G     P++ D  RT
Sbjct: 65  AAVDATVNQVLASRYGIRGFPTIKIFQKGES---PVDYDGGRT 104

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 148 FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 207
           F+ SDP        +  +   +FD+ + + +   L+E YAPWCGHC+    T+ K AK L
Sbjct: 12  FYDSDP-------HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64
Query: 208 RGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFF 239
            GV  +     D   N+   AK D  GFPT++ F
Sbjct: 65  DGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIA 216
           + G V  +  NNFD+ + +      ++ YAPWCGHC+   PT+ +L+ K   G+  + IA
Sbjct: 5   SSGTVLALTENNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 62
Query: 217 KMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
           ++D T   +  +K    G+PT+L F  G K  +       R + +L++F+   A
Sbjct: 63  EVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSG---GRDLDSLHRFVLSQA 113

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGT--TNE 224
           +NFD++V + +  +L+E YAPWCGHC+   P Y K AK L +    I +AK+D T  T+ 
Sbjct: 15  DNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 73
Query: 225 HHRAKSDGFPTILFFPAGNKSFD 247
             R    G+PT+  F  G + FD
Sbjct: 74  AKRFDVSGYPTLKIFRKG-RPFD 95

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 161 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           DV  +  +NF+  + D      +L+E +APWCGHC+   P Y   A  L+G+  + +AK+
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 219 DGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
           D T  TN  ++    G+PT+  F  G ++      D  RT   +   LKK A 
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAG---AYDGPRTADGIVSHLKKQAG 109

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 226
           NNFD+ + +      ++ YAPWCGHC+   PT+ +L+ K   G+  + IA++D T   + 
Sbjct: 13  NNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 70
Query: 227 RAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
            +K    G+PT+L F  G K  +       R + +L++F+   A
Sbjct: 71  CSKYSVRGYPTLLLFRGGKKVSEHSG---GRDLDSLHRFVLSQA 111

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 226
           NNFD+ + +      ++ YAPWCGHC+   PT+ +L+ K   G+  + IA++D T   + 
Sbjct: 8   NNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 65
Query: 227 RAKSD--GFPTILFFPAGNK 244
            +K    G+PT+L F  G K
Sbjct: 66  CSKYSVRGYPTLLLFRGGKK 85

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
           DV  +  +NF+  V+      L+E YAPWCGHCQ   P + K A  L+ V  +     D 
Sbjct: 18  DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK 77
Query: 221 TTNEHHRAKSDGFPTILFFPA 241
             +   +    GFPTI  F A
Sbjct: 78  HQSLGGQYGVQGFPTIKIFGA 98

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 224
           V   NF++ VL   K VL++ +APWCG C+   P   +LAK   G   +V   +D   N 
Sbjct: 6   VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 225 HHRAKSDGFPTILFFPAGN 243
             +      PT+L F  G 
Sbjct: 66  AAQYGIRSIPTLLLFKNGQ 84

>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27 Length = 227

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 18  DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAK 75
           D + ++ F+  N L +VT +       +F S I+  LLL     S + E+ +  +++AAK
Sbjct: 99  DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAK 158
Query: 76  SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKT 135
            F+GK++F+ V    ++ GK +S +     + P +  Y   DD    +   E++++ ++ 
Sbjct: 159 LFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQN 218
Query: 136 FGEDFLEGK 144
           F + FL GK
Sbjct: 219 FCDGFLSGK 227

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
           +V+ V  +++ E VL+    V+++ +APWCG C+   P  ++LAK   G  ++     D 
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 221 TTNEHHRAKSDGFPTILFFPAGNK 244
                 +      PT+LFF  G +
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGER 84

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           +++ E VL+    V+++ +APWCG C+   P  ++LAK   G  ++     D       +
Sbjct: 7   SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 228 AKSDGFPTILFFPAGNK 244
                 PT+LFF  G +
Sbjct: 67  YNIRSIPTVLFFKNGER 83

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 174 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEHHRAKSD- 231
           VL       +E +A WCGHC AF PT+  LA+ ++    ++ +A +D     +     D 
Sbjct: 26  VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 232 ---GFPTILFFPA 241
              GFPT+ FF A
Sbjct: 86  NIPGFPTVRFFXA 98

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           + F  +VL+ S  VL++ +APWCG C+   P  +++A   +     V    D + N    
Sbjct: 9   DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 228 AKSDGFPTILFFPAGNKS 245
                 PTI+ F  G K 
Sbjct: 69  YGIRSIPTIMVFKGGKKC 86

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCGHC+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 161 DVKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           DV +V+   NFDE++ + +K VL++ +A WC  C  +EP Y K+A+  +G    V  +++
Sbjct: 4   DVTLVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLN 60
Query: 220 GTTNEHHRAKSD--GFPTILFFPAG 242
              N+    K      PT L F  G
Sbjct: 61  VDENQKIADKYSVLNIPTTLIFVNG 85

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
           +V+ V  +++ E VL+    V+++ +APWCG  +   P  ++LAK   G  ++     D 
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 221 TTNEHHRAKSDGFPTILFFPAGNK 244
                 +      PT+LFF  G +
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGER 84

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH 225
             F+E VL      +++ YAPWCG CQ F P +  LA+ ++G   +   K+D        
Sbjct: 11  QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTC 68
Query: 226 HRAKSDGFPTILFFP--AGNKSF--DPINVDVDRTVVAL 260
            +A    +P++  +      KS   + IN    +T+ AL
Sbjct: 69  QKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAAL 107

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 228
           N +E   +  K  +++ YA WCG C+   P  ++LAK   G   IVI K+D T  E   A
Sbjct: 29  NPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVD-TEKEQELA 85
Query: 229 KSDG---FPTILFFPAGNK 244
            + G    P+ILF P   K
Sbjct: 86  GAFGIRSIPSILFIPMEGK 104

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 223
           V   NFDE  L +   VL++ +A WC  C+   P   ++AK   G   +++AK+D   N 
Sbjct: 7   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 63
Query: 224 -EHHRAKSDGFPTILFFPAGN 243
               R +    PT++ F  G 
Sbjct: 64  KTAXRYRVXSIPTVILFKDGQ 84

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 223
           V   NFDE  L +   VL++ +A WC  C+   P   ++AK   G   +++AK+D   N 
Sbjct: 6   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 62
Query: 224 -EHHRAKSDGFPTILFFPAGN 243
               R +    PT++ F  G 
Sbjct: 63  KTAXRYRVXSIPTVILFKDGQ 83

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
           + G+V+++   N+ E++     D ++E YAPWC  CQ  +P +   A+    ++ + IAK
Sbjct: 5   SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VNIAK 60
Query: 218 MDGT 221
           +D T
Sbjct: 61  VDVT 64

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 224
           V  ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D     
Sbjct: 7   VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 225 HHRAKSDGFPTILFFPAG 242
             +    G PT+L F  G
Sbjct: 67  APKYGIRGIPTLLLFKNG 84

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A+  +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAGN 243
               G PT+L F  G+
Sbjct: 70  YGIRGIPTLLLFKNGD 85

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 20  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 79
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 80  YGIRGIPTLLLFKNG 94

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 223
           V   +F   VL  +K VL++ +A WCG C+   P   ++A   R  D + +AK+D  TN 
Sbjct: 12  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 69
Query: 224 EHHRA-KSDGFPTILFFPAGN 243
           E  R  +    PT++ F  G 
Sbjct: 70  ETARNFQVVSIPTLILFKDGQ 90

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 228
           +FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       + 
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY 70
Query: 229 KSDGFPTILFFPAG 242
              G PT+L F  G
Sbjct: 71  GIRGIPTLLLFKNG 84

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 174 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEHHRAKSD- 231
           VL  S    +E +A WCGH  AF PT+ +LA  ++    ++ +A +D     +     + 
Sbjct: 26  VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 232 ---GFPTILFFPAGNKS 245
              GFPT+ FF A  K+
Sbjct: 86  NIAGFPTVRFFQAFTKN 102

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 223
           V   +F   VL  +K VL++ +A WCG C+   P   ++A   R  D + +AK+D  TN 
Sbjct: 17  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 74
Query: 224 EHHRA-KSDGFPTILFFPAGN 243
           E  R  +    PT++ F  G 
Sbjct: 75  ETARNFQVVSIPTLILFKDGQ 95

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  + +A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P   ++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 158 NDGD----VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGV 210
           NDG+    V  +    FD IV+D  KDV +  Y PW  H  A    ++ L+      R  
Sbjct: 9   NDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNH 68
Query: 211 DSIVIAKMDGTT--NEHHRAKSDGFPTILFFPAGNK 244
            + V A++DG    +   R +  GFPT+ ++   +K
Sbjct: 69  LTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDK 104

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 11  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 71  YGIRGTPTLLLFKNG 85

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           DG+V        D+++ D+   V+ + +APWCG C++F P + + A    G    V    
Sbjct: 37  DGEVINATAETLDKLLQDDLPXVI-DFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95
Query: 219 DGTTNEHHRAKSDGFPTILFFPAGNKSFDPIN 250
           +       R +    PTI  +  G K  D +N
Sbjct: 96  EAEPALSTRFRIRSIPTIXLYRNG-KXIDXLN 126

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++F+  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YGIRGIPTLLLFKNG 84

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           G +K V  ++F++ VL   K VL++ +A WCG C+   P+   +A      D I I K++
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLN 62
Query: 220 GTTNEHHRAKSD--GFPTILFFPAG 242
              N    AK      PT+  +  G
Sbjct: 63  IDENPGTAAKYGVMSIPTLNVYQGG 87

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  ++     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
               G PT+L F  G
Sbjct: 70  YIERGIPTLLLFKNG 84

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD+ VL  S  VL++ +A WCG C+   P   ++ K   G  ++    +D      + 
Sbjct: 10  SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 228 AKSDGFPTILFFPAG 242
            +    PT++    G
Sbjct: 70  YQVRSIPTLMLVRDG 84

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           ++FD  VL     +L++ +A WCG C+   P  +++A   +G  ++    +D       +
Sbjct: 10  DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 228 AKSDGFPTILFFPAG 242
                 PT+L F  G
Sbjct: 70  YGIRSIPTLLLFKNG 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	8e-69
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-57
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-23
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	6e-52
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-18
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	8e-06
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-48
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	3e-46
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	1e-43
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-39
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-32
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-12
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	5e-32
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	7e-32
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	7e-17
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	7e-04
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	1e-30
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	2e-30
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	5e-12
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	9e-30
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	3e-08
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	4e-29
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	6e-29
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	8e-29
1mek_A	120	Protein disulfide isomerase; electron transport, r	9e-29
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-28
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	6e-28
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-11
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	8e-09
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	7e-27
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	7e-27
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-24
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	3e-25
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	6e-25
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	1e-23
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	2e-22
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-11
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	2e-21
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-13
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	5e-10
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-21
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	8e-19
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	2e-12
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	8e-11
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	9e-11
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	2e-10
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-10
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-10
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-10
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-10
2l57_A	126	Uncharacterized protein; structural genomics, unkn	9e-10
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-09
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	3e-09
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	4e-09
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	1e-08
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	1e-08
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	1e-08
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-08
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	2e-08
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-08
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	2e-08
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	3e-08
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	3e-08
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	4e-08
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	4e-08
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	4e-08
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	5e-08
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	6e-08
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	6e-08
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	6e-08
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	6e-08
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	7e-08
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	7e-08
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	8e-08
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	1e-07
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	1e-07
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-07
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	2e-07
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	3e-07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-07
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	3e-07
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	3e-07
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	4e-07
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	4e-07
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	4e-07
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	4e-07
2kuc_A	130	Putative disulphide-isomerase; structural genomics	5e-07
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	5e-07
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	9e-07
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	5e-05
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	2e-06
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	2e-06
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-06
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-06
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	3e-06
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	3e-06
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	5e-06
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	6e-06
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	7e-06
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	8e-06
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	1e-05
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-05
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	1e-05
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	2e-05
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-05
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	2e-05
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	2e-05
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	4e-05
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	4e-05
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-05
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	9e-05
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	1e-04
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	4e-04
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	4e-04
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	6e-04

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  217 bits (554), Expect = 8e-69
 Identities = 100/272 (36%), Positives = 153/272 (56%), Gaps = 5/272 (1%)

Query: 2   VKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN 61
           + K+ ++     +G+  K  + DF+  N+LPLV  FT + AP +F   IK  +LLF   +
Sbjct: 87  LFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKS 146

Query: 62  --DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 119
             D +  L  F+ AA+SFKGK++F+++  D+ D  + +  +     E P V   T  ++ 
Sbjct: 147 VSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEM 206

Query: 120 KKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDE 177
            K+  +  ELT ++I  F   FLEGK+KP   S  +PE  D   VK++VG NF+++  DE
Sbjct: 207 TKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDE 266

Query: 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTIL 237
            K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ 
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLK 326

Query: 238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
           FFPA       I+ + +RT+    KFL+    
Sbjct: 327 FFPASADR-TVIDYNGERTLDGFKKFLESGGQ 357

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  192 bits (489), Expect = 1e-57
 Identities = 83/325 (25%), Positives = 131/325 (40%), Gaps = 24/325 (7%)

Query: 2   VKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN 61
              E    +       D      ++    LP              ES +    L +    
Sbjct: 191 AMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEE 250

Query: 62  DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK 121
           + E+  P+F E AK  +G + FV +           +    +  + P    +   +D K 
Sbjct: 251 ELEEYKPLFTELAKKNRGLMNFVSIDARKF---GRHAGNLNMKEQFPLFAIHDMTEDLKY 307

Query: 122 HILD------------GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNN 169
            +                L    I++  +DFL+G   P  KS  I E  D  V  +VG N
Sbjct: 308 GLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKN 367

Query: 170 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEHHRA 228
            DEIV D  KDVL+  YAPWCGHC+   PTY +LA       S ++IAK+D T N+    
Sbjct: 368 HDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGV 427

Query: 229 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTS 288
             +G+PTI+ +P G KS + +     R++ +L+ F+K+N              K     +
Sbjct: 428 VIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENGHFDVD-------GKALYEEA 479

Query: 289 EPKAESSDIKESHESSSDKDVKDEL 313
           + KA      ++  +  +  + DEL
Sbjct: 480 QEKAAEEADADAELADEEDAIHDEL 504

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =   99 bits (248), Expect = 1e-23
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 147 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
              + + +    D  V  +  ++F+E +      VL E +APWCGHC+   P Y K A+ 
Sbjct: 2   GHMQQEAVAP-EDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAET 59

Query: 207 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 264
           L    +I +A++D T N+    + +  GFP++  F   + + + I+ +  RT  A+ +F+
Sbjct: 60  LVE-KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN-NSIDYEGPRTAEAIVQFM 117

Query: 265 KKNASIPFKIQKPTSAPKTEKPTSEP 290
            K +     +     A    +    P
Sbjct: 118 IKQSQPAVAVVADLPAYLANETFVTP 143

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 16/213 (7%)

Query: 63  SEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 122
            + + P + +AA++   K I +  Q+D     + +     I G  P +  +  +D     
Sbjct: 46  CKNMAPEYVKAAETLVEKNITL-AQIDC-TENQDLCMEHNIPG-FPSLKIFKNSDVNNSI 102

Query: 123 ILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVL 182
             +G  T + I  F     +  +                  ++V           S  + 
Sbjct: 103 DYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQ----------SGKID 152

Query: 183 LEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFF 239
            +  A +          Y+ ++          SI +         ++  K+D     +F 
Sbjct: 153 ADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFE 212

Query: 240 PAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272
                   P   ++D +V A Y          F
Sbjct: 213 KWLQVEALPYFGEIDGSVFAQYVESGLPLGYLF 245

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  176 bits (448), Expect = 6e-52
 Identities = 88/290 (30%), Positives = 130/290 (44%), Gaps = 9/290 (3%)

Query: 3   KKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN- 61
           K E + ++Y  + K     I  F+  N   +    T +N   +    +            
Sbjct: 190 KFEDKTVAYT-EQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKN 248

Query: 62  --DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA---PKVLAYTGN 116
              S          AK F      +   + +          FG+   A   P V   T  
Sbjct: 249 AKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAK 308

Query: 117 DDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD 176
            +      +       ++ F +D+ +G LK + KS+PIPE+NDG VK+VV  NFDEIV +
Sbjct: 309 GEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNN 368

Query: 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT 235
           E+KDVL+E YAPWCGHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPT
Sbjct: 369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPT 428

Query: 236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEK 285
           I F PA  K  +P   +  R +     +L++ A+ P  IQ+     K + 
Sbjct: 429 IYFSPANKKL-NPKKYEGGRELSDFISYLQREATNPPVIQEEKPKKKKKA 477

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 83.8 bits (206), Expect = 3e-18
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 161 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           DV  +  +NF+  + D      +L+E +APWCGH +   P Y   A  L+G   + +AK+
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKV 59

Query: 219 DGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 271
           D T N +   K    G+PT+  F  G ++      D  RT   +   LKK A   
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAGA---YDGPRTADGIVSHLKKQAGPA 111

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 33/227 (14%)

Query: 63  SEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 122
           +++L P +E AA   KG +    V   +          +G++G  P +  +   ++A  +
Sbjct: 36  AKRLAPEYEAAATRLKGIVPLAKV---DCTANTNTCNKYGVSG-YPTLKIFRDGEEAGAY 91

Query: 123 ILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVL 182
             DG  T D I +  +                          +      +  + +    +
Sbjct: 92  --DGPRTADGIVSHLKKQAG-----------------PASVPLRTEEEFKKFISDKDASI 132

Query: 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAG 242
           +  +             + K A +LR         ++   NE+     +G   ILF P+ 
Sbjct: 133 VGFFDDSFSEAH---SEFLKAASNLRDNYRFAHTNVESLVNEYD---DNGEGIILFRPSH 186

Query: 243 NKS-FDPINVDVD---RTVVALYKFLKKNASIPFKIQKPTSAPKTEK 285
             + F+   V       T   + KF+++N           +    + 
Sbjct: 187 LTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG 233

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  158 bits (401), Expect = 1e-48
 Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 4/130 (3%)

Query: 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 216
            + G VK+VVG  FD IV+D  KDVL+E YAPWCGHC+  EP Y  L K  +G   +VIA
Sbjct: 4   GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63

Query: 217 KMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNASIPFK 273
           KMD T N+  + + K +GFPTI F P+G+K  +PI  +  +R +  L KF+ ++A+   +
Sbjct: 64  KMDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKRSR 122

Query: 274 IQKPTSAPKT 283
            ++  S P +
Sbjct: 123 TKEELSGPSS 132

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  151 bits (384), Expect = 3e-46
 Identities = 53/120 (44%), Positives = 71/120 (59%), Gaps = 5/120 (4%)

Query: 155 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---D 211
           P  ++G V +VV  N++EIVLD++KDVL+E YAPWCGHC+A  P Y +L          D
Sbjct: 2   PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61

Query: 212 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 271
            +VIAK+D T N+    +  GFPTI  +PAG K   P+     RTV  L KF+ +N    
Sbjct: 62  RVVIAKVDATAND-VPDEIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGKYK 119

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  144 bits (366), Expect = 1e-43
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 149 FKSDPIPETNDG--DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
             +  +    +    V  +    FD IV+D  KDV +  Y PW  H  A    ++ L+  
Sbjct: 2   HMASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMS 61

Query: 207 LRGV---DSIVIAKMDGTTN--EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALY 261
                   + V A++DG        R +  GFPT+ ++   +K  +P      R +  + 
Sbjct: 62  QSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQ-EPFEYSGQRYLSLVD 120

Query: 262 KFLKKN 267
            F+ +N
Sbjct: 121 SFVFQN 126

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  146 bits (370), Expect = 1e-39
 Identities = 34/272 (12%), Positives = 76/272 (27%), Gaps = 27/272 (9%)

Query: 14  DGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSND----SEKLLPV 69
           +G      I +F+   + P V   T      + +    +++ +    +     S+ L+P 
Sbjct: 525 EGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPE 584

Query: 70  FEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 129
           ++  A++  G +    V                +    P++  Y                
Sbjct: 585 WKRMARTLTGLINVGSVDCGQY---HSFCTQENVQR-YPEIRFYPQKSSKAYQY------ 634

Query: 130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPW 189
                     +       +                +    F+E VL      +++ YAPW
Sbjct: 635 --------HSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPW 686

Query: 190 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFD 247
            G  Q F P +  LA+ ++    +   K+D         +A    +P++  +        
Sbjct: 687 SGPSQNFAPEFELLARMIK--GKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKS 744

Query: 248 PINVDV-DRTVVALYKFLKKNASIPFKIQKPT 278
                +  R    +   +           K  
Sbjct: 745 IWEEQINSRDAKTIAALIYGKLETLQSQVKRN 776

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  126 bits (318), Expect = 1e-32
 Identities = 43/288 (14%), Positives = 87/288 (30%), Gaps = 37/288 (12%)

Query: 2   VKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN 61
              + EK S       D   I   +  N LP   + +               L+ F    
Sbjct: 306 TLNDREKSSVLFLNSLDAKEIYMEIIHN-LPDFELLSANQLEDRLAH--HRWLVFFHFGK 362

Query: 62  DSEKLLPVFEEAAKSFKGKLI-FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
           +     P  ++     K + I  V     +      +     +    P +  + G    +
Sbjct: 363 NENANDPELKKLKTLLKNEHIQVVRF---DCSSAPGICSDLYVFQ--PSLAVFKGQGTKE 417

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
             I  G+  L  I  F                   E+ +  V  +   NF      + + 
Sbjct: 418 YEIHHGKKILYDILAF-----------------AKESVNSHVTTLGPQNFPA---SDKEP 457

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 238
            L++ +APW    +A  P   K +  L G   + +  +D T +E   +      +PT + 
Sbjct: 458 WLVDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCTIHEGLCNMYNIQAYPTTVV 515

Query: 239 FPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKP 286
           F   +        +   +   + +F++   +       P++  +  K 
Sbjct: 516 FNQSS----IHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQ 559

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 70.2 bits (171), Expect = 1e-13
 Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 27/229 (11%)

Query: 65  KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL 124
            L P + E AK   G L    V   ++   + +    G+    P +  +     A K+  
Sbjct: 150 DLAPTWREFAKEVDGLLRIGAVNCGDD---RMLCRMKGVNS-YPSLFIFRSGMAAVKY-- 203

Query: 125 DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLE 184
           +G+ + + +      F    ++               V  +   NF   + + +    + 
Sbjct: 204 NGDRSKESLV----AFAMQHVRS-------------TVTELSTGNFVNAI-ETAFAAGVG 245

Query: 185 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG 242
               +C   +    +  +L         + +  +D    +       +    T  F P  
Sbjct: 246 WLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGA 305

Query: 243 N-KSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEP 290
                +  +V    ++ A   +++   ++P       +  +        
Sbjct: 306 TLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRW 354

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 67.5 bits (164), Expect = 1e-12
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 15/176 (8%)

Query: 95  KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPI 154
                 F     A +VL     D+  +   D           G  +       +      
Sbjct: 58  PNAHGDFLKINRAYEVL----KDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYD 113

Query: 155 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 214
               D ++  +    FD  V +  +   +  Y+P   H     PT+ + AK + G+  + 
Sbjct: 114 D---DPEIITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL--LR 167

Query: 215 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
           I  ++   +         + +P++  F +G  +        DR+  +L  F  ++ 
Sbjct: 168 IGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNG---DRSKESLVAFAMQHV 220

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  115 bits (290), Expect = 5e-32
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 16/146 (10%)

Query: 150 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 209
             D +    +  V ++   NFD  V D+   VLLE YAPWCGHC+ F P Y K+A  L+ 
Sbjct: 7   GDDDLEVKEENGVWVLNDGNFDNFVADK-DTVLLEFYAPWCGHCKQFAPEYEKIASTLKD 65

Query: 210 VDS-IVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
            D  I +AK+D T+      +    G+PTI     G      ++ D  RT   +   +++
Sbjct: 66  NDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQ----AVDYDGSRTQEEIVAKVRE 121

Query: 267 NASIPFKIQKPTSAPKTEKPTSEPKA 292
            +       +P   P  E  TS P +
Sbjct: 122 VS-------QPDWTPPPE-VTSGPSS 139

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  121 bits (304), Expect = 7e-32
 Identities = 30/188 (15%), Positives = 54/188 (28%), Gaps = 11/188 (5%)

Query: 3   KKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN- 61
              +     +     +     +++    +PLV   T EN   + E  +   +L     + 
Sbjct: 190 PGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDT 249

Query: 62  -DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 120
              E           S KG + F++   D +    P+        + P +   +      
Sbjct: 250 ESLEIFQNEVARQLISEKGTINFLHA--DCDKFRHPLLHIQKTPADCPVIAIDSFRHMYV 307

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
                  L   K+K F  D   GKL   F   P P           G    ++     + 
Sbjct: 308 FGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTA------PGEQAQDVASSPPES 361

Query: 181 VLLEIYAP 188
              +  AP
Sbjct: 362 SFQK-LAP 368

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 79.3 bits (195), Expect = 7e-17
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR----GVDSIV 214
             ++  +   N DE +L+ +   L+  YA WC   Q   P + + +  ++      + +V
Sbjct: 4   GSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62

Query: 215 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272
            A++D   +     R +   +PT+  F  G            R+V AL  ++++  S P 
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMM--KREYRGQRSVKALADYIRQQKSDPI 120

Query: 273 KIQKPTSAPKT 283
           +  +  +   T
Sbjct: 121 QEIRDLAEITT 131

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 37/212 (17%)

Query: 63  SEKLLPVFEEAAKSFK------GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 116
           S+ L P+FEEA+   K       +++F  V   + D    +++ + I+   P  L    N
Sbjct: 37  SQMLHPIFEEASDVIKEEFPNENQVVFARV---DCDQHSDIAQRYRISKY-P-TLKLFRN 91

Query: 117 DDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD 176
               K    G+ ++  +  +                        D    + +  +   LD
Sbjct: 92  GMMMKREYRGQRSVKALADYIRQQK------------------SDPIQEIRDLAEITTLD 133

Query: 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI 236
            SK  ++  +             + ++A  L    + +         +  + +      I
Sbjct: 134 RSKRNIIGYFE---QKDSDNYRVFERVANILHDDCAFLS-----AFGDVSKPERYSGDNI 185

Query: 237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
           ++ P G+ + D + +         Y +++   
Sbjct: 186 IYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKC 217

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147

 Score =  112 bits (280), Expect = 1e-30
 Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 25  FVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLI 82
            +  N+LPLV  FT + AP +F   IK  +LLF   +  D +  L  F+ AA+SFKGK++
Sbjct: 7   HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKIL 66

Query: 83  FVYVQMDNEDVGKPVSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDF 140
           F ++  D+ D  + + E+FG+  E  P V   T  ++  K+  +  ELT ++I  F   F
Sbjct: 67  FAFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRF 125

Query: 141 LEGKLKPFFKSDPIPETND 159
           LEGK+KP   S  +PE  D
Sbjct: 126 LEGKIKPHLMSQELPEDWD 144

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  113 bits (285), Expect = 2e-30
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVI 215
           +    + ++  +     VL       +E +A WCGHC AF PT+  LA+ ++     + +
Sbjct: 9   SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYL 68

Query: 216 AKMDGTTNEHHRAKSD----GFPTILFFPAGN-KSFDPINVDVDRTVVALYKFLKKNASI 270
           A +D     +     D    GFPT+ FF A        +       V  L + L      
Sbjct: 69  AALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128

Query: 271 PFKIQKPTSAPKTEKPTSEPKAESSDIKESH 301
                 P   P       E     +   E +
Sbjct: 129 HHDTWPPACPPLEPAXLEEIDGFFARNNEEY 159

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 20/206 (9%)

Query: 65  KLLPVFEEAAKSFKGKLIFVYV-QMD-NEDVGKPVSEYFGITGEAP--KVLAYTGNDDAK 120
              P +   A+  K     +Y+  +D  E+    V   F I G  P  +       + + 
Sbjct: 47  AFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG-FPTVRFFXAFTXNGSG 105

Query: 121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
                    +  ++    D LE     +  + P  E         +         +  + 
Sbjct: 106 AVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEP------AXLEEIDGFFARNNEEY 159

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTI-LF 238
           + L          +       ++A  L     + + ++  T      +     FP+  L 
Sbjct: 160 LALIFEXGGSYLAR-------EVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL 212

Query: 239 FPAGNKSFDPINVDVDRTVVALYKFL 264
           F  G+ S  P+ ++      A  + L
Sbjct: 213 FRNGSVSRVPVLMESRSFYTAYLQRL 238

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  117 bits (293), Expect = 9e-30
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV-I 215
           ++   + ++  ++    VL  S    +E +A WCGH  AF PT+ +LA  ++     + +
Sbjct: 9   SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNL 68

Query: 216 AKMDGTTNEHHRAKSD----GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 271
           A +D     +     +    GFPT+ FF A  K+     +      V   +    +A   
Sbjct: 69  AVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128

Query: 272 FKIQKPTSAPKTEKPTSE 289
            +   P + P  E     
Sbjct: 129 HRDTWPPACPPLEPAKLN 146

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 35/255 (13%), Positives = 80/255 (31%), Gaps = 23/255 (9%)

Query: 65  KLLPVFEEAAKSFKGKLIFVYV-QMD-NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 122
              P ++E A   K     + +  +D  E+    V   F I G  P V  +         
Sbjct: 47  AFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF-PTVRFFQAFTKNGSG 105

Query: 123 ILD--GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD 180
                    +  ++    D LE     +  + P  E      K+   + F      +   
Sbjct: 106 ATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEP----AKLNDIDGFFTRNKADYLA 161

Query: 181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI-LF 238
           ++ E    + G     + +            ++ + ++  T ++  ++     FP+  L 
Sbjct: 162 LVFEREDSYLGREVTLDLSQY---------HAVAVRRVLNTESDLVNKFGVTDFPSCYLL 212

Query: 239 FPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDIK 298
              G+ S  P+ V+          +L+    +       T+ P T    +    + +D  
Sbjct: 213 LRNGSVSRVPVLVESRSFYT---SYLRGLPGLTRDAPPTTATPVTADKIAPTVWKFADRS 269

Query: 299 ESHESSSDKDVKDEL 313
           + + +  +  +   L
Sbjct: 270 KIYMADLESALHYIL 284

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score =  107 bits (268), Expect = 4e-29
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 31  LPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDN 90
            PL+     E       + I    +    + + ++L    +  A++ +G + F  +  D 
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTI--DA 62

Query: 91  EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD--GELTLDKIKTFGEDFLEGKLKPF 148
           +  G        +  +     A       +K   D   E+T + IK F +DF+ GK++P 
Sbjct: 63  KAFGAHA-GNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS 121

Query: 149 FKSDPIPETNDG 160
            KS+PIPE  +G
Sbjct: 122 IKSEPIPEKQEG 133

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  107 bits (268), Expect = 6e-29
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 216
           ++  DV  +  +NF+  V+      L+E YAPWCGHCQ   P + K A  L+ V  + + 
Sbjct: 14  SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVG 71

Query: 217 KMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
            ++   ++    +    GFPTI  F A      P +    RT  A+        
Sbjct: 72  AVNADKHQSLGGQYGVQGFPTIKIFGANKNK--PEDYQGGRTGEAIVDAALSAL 123

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  106 bits (267), Expect = 8e-29
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 15/140 (10%)

Query: 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIV 214
            + GDV  +  ++FD+ VLD     ++E YAPWCGHC+  EP +   A  ++      + 
Sbjct: 4   GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63

Query: 215 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272
           +A +D T N+    R    GFPTI  F  G     P++ D  RT   +        S   
Sbjct: 64  LAAVDATVNQVLASRYGIRGFPTIKIFQKGES---PVDYDGGRTRSDIVSRALDLFS--- 117

Query: 273 KIQKPTSAPKTEKPTSEPKA 292
                 +AP  E   S P +
Sbjct: 118 -----DNAPPPELLESGPSS 132

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  106 bits (266), Expect = 9e-29
 Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 154 IPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS- 212
            PE  D  V ++  +NF E  L   K +L+E YAPWCGHC+A  P Y K A  L+   S 
Sbjct: 2   APEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE 59

Query: 213 IVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
           I +AK+D T       +    G+PTI FF  G+ +  P      R    +  +LKK  
Sbjct: 60  IRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKKRT 116

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  105 bits (265), Expect = 1e-28
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 21/143 (14%)

Query: 155 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 214
              + G+V+++   N+ E++     D ++E YAPWC  CQ  +P +   A+    ++ + 
Sbjct: 2   SSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VN 57

Query: 215 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272
           IAK+D T       R   +  PTI     G            RT      F+        
Sbjct: 58  IAKVDVTEQPGLSGRFIINALPTIYHCKDGE----FRRYQGPRTKKDFINFISDK----- 108

Query: 273 KIQKPTSAPKTEKPTSEPKAESS 295
                      E  +S     SS
Sbjct: 109 ------EWKSIEPVSSWFSGPSS 125

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  110 bits (276), Expect = 6e-28
 Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             +   E+     D    +  I +FV  ++   +     E+    +E  +    ++    
Sbjct: 197 FYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAE 256

Query: 61  NDSE---KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY---FGITGEAPKVLAYT 114
                  + L + +  A+          + +D +D    V  +   F I   AP++    
Sbjct: 257 EADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVN 316

Query: 115 GNDDAKKHI----LDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD 161
             D     +     +   + ++++ + ED LEG++      D   + +D D
Sbjct: 317 VTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTEDDDDEDDDDDDDD 367

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 17/135 (12%)

Query: 150 KSDPIPETNDGDVKIVV--GNNFDEIVLDESKDVLLEIYAPWCGHC------QAFEPTYN 201
           +    PE  DG  +++     N+   V  + + + L  + P           +  E    
Sbjct: 2   EGLDFPE-YDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILE 59

Query: 202 KLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA 259
             A+ L     +    +D   +     K       +I  F         I  D + +   
Sbjct: 60  LAAQVLED-KGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDE----VIEYDGEFSADT 114

Query: 260 LYKFLKKNASIPFKI 274
           L +FL      P ++
Sbjct: 115 LVEFLLDVLEDPVEL 129

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 55.0 bits (132), Expect = 8e-09
 Identities = 38/274 (13%), Positives = 81/274 (29%), Gaps = 38/274 (13%)

Query: 4   KETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDS 63
           KE E I Y  DG+F   T+ +F+       V +   E     FE+      L+    N  
Sbjct: 99  KEDEVIEY--DGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKD 156

Query: 64  EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 123
            +    F+EAA+ F   + F             V++   +     ++  Y    +    I
Sbjct: 157 SEHYKAFKEAAEEFHPYIPFFAT------FDSKVAKKLTLKL--NEIDFYEAFMEEPVTI 208

Query: 124 LDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDE-SKDVL 182
            D   + ++I     +F+E   +               ++ +   +  E   D+     +
Sbjct: 209 PDKPNSEEEIV----NFVEEHRRST-------------LRKLKPESMYETWEDDMDGIHI 251

Query: 183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA----------KSDG 232
           +            F      +A+       + I  +D                    +  
Sbjct: 252 VAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQ 311

Query: 233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
              +    A +   +  + +   +   L  +L+ 
Sbjct: 312 IGVVNVTDADSVWMEMDDEEDLPSAEELEDWLED 345

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  100 bits (252), Expect = 7e-27
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAK 217
              V  +  NNFD+ + +      ++ YAPWCGHC+   PT+ +L+K      + + IA+
Sbjct: 4   GSTVLALTENNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61

Query: 218 MDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
           +D T   +   +    G+PT+L F  G K  +       R + +L++F+   A
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGGKKVSE---HSGGRDLDSLHRFVLSQA 111

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  104 bits (261), Expect = 7e-27
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 147 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
           P    D +    +  V ++   NFD  V  +   VLLE YAPWCGHC+ F P Y K+A  
Sbjct: 2   PLGSEDDLEVKEENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANI 60

Query: 207 LRGVDS-IVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKF 263
           L+  D  I +AK+D T+     ++ D  G+PTI     G      ++ +  RT   +   
Sbjct: 61  LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ----AVDYEGSRTQEEIVAK 116

Query: 264 LKKNASIPFKIQKPTSAPKTEK 285
           +++ +   +      +   T++
Sbjct: 117 VREVSQPDWTPPPEVTLVLTKE 138

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 98.8 bits (246), Expect = 1e-24
 Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 22/207 (10%)

Query: 65  KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL 124
           +  P +E+ A   K K   + V   +      ++  F ++G  P +         +    
Sbjct: 49  QFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG-YPTIKILKKG---QAVDY 104

Query: 125 DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLE 184
           +G  T ++I     +  +          P          ++   NFDE+V +++  +L+E
Sbjct: 105 EGSRTQEEIVAKVREVSQ----------PDWTPPPEVTLVLTKENFDEVV-NDADIILVE 153

Query: 185 IYAPWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEH--HRAKSDGFPTILFFPA 241
            YAPWCGHC+   P Y K AK L      I +AK+D T       R    G+PT+  F  
Sbjct: 154 FYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK 213

Query: 242 GNKSFDPINVDVDRTVVALYKFLKKNA 268
           G     P + +  R    +  ++ + +
Sbjct: 214 GR----PYDYNGPREKYGIVDYMIEQS 236

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  100 bits (250), Expect = 3e-25
 Identities = 23/155 (14%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT------ 221
             F +++  +SK VL++    +    +     + +LA++    D +++A++  +      
Sbjct: 13  VTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKL 69

Query: 222 ---TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPT 278
               +E ++   + +P    F  G+   +P+       V A+ ++LK        +  P 
Sbjct: 70  NMELSEKYKLDKESYPVFYLFRDGDFE-NPVPYTGAVKVGAIQRWLKGQGV---YLGMPG 125

Query: 279 SAPKTEKPTSEPKAESSDIKESHESSSDKDVKDEL 313
             P  +    E    S            +D    +
Sbjct: 126 CLPVYDALAGEFIRASGVEARQALLKQGQDNLSSV 160

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score = 99.8 bits (248), Expect = 6e-25
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 6/169 (3%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
           +  K  +K   + + K     I  F+  N   +    T +N   +    +          
Sbjct: 83  LTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYE 142

Query: 61  N---DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV-LAYTGN 116
                S          AK F      +   + +          FG+   A ++ +     
Sbjct: 143 KNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRT 202

Query: 117 DDAKKHILDGE--LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVK 163
              +K ++  E       ++ F +D+ +G LK + KS+PIPE+NDG   
Sbjct: 203 AKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGAAA 251

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score = 96.0 bits (238), Expect = 1e-23
 Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 3   KKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAV--- 59
           K E         G  + S I D+V  + LPLV      N    +       +        
Sbjct: 87  KYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYSKRPLVVVYYSVDFSF 146

Query: 60  --SNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 117
                ++       E AK F     + +   D ED    V +  G++     V A   ++
Sbjct: 147 DYRTATQFWRNKVLEVAKDFPE---YTFAIADEEDYATEV-KDLGLSESGGDVNAAILDE 202

Query: 118 DAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVK 163
             KK  ++  E   D ++ F   F +GKLKP  KS P+P+ N G   
Sbjct: 203 SGKKFAMEPEEFDSDALREFVMAFKKGKLKPVIKSQPVPKNNKGAAA 249

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 94.0 bits (233), Expect = 2e-22
 Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 216
            +D  +  +   +FD+ + + +   L+E YAPWCGHC+    T+ K AK L GV  +   
Sbjct: 14  DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAV 73

Query: 217 KMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV--------------DRTVVAL 260
             D   N+    +   +GFPT++ F            +                RT+  +
Sbjct: 74  NCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPI 133

Query: 261 YKFLKKNASIPFKIQKPTSAPKTEKPTSEPKAESSDI 297
             F            +          T       S  
Sbjct: 134 VDFSLSRI-------RSYVKKFVRIDTLGSLLRKSPK 163

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 45/265 (16%), Positives = 78/265 (29%), Gaps = 44/265 (16%)

Query: 65  KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG--------------EAPKV 110
           KL   F +AAK   G +    V  D  +  K +   + + G                P  
Sbjct: 52  KLSSTFRKAAKRLDGVVQVAAVNCD-LNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPID 110

Query: 111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG--- 167
            A          +  G  TL  I  F    +   +K F + D +        K+ V    
Sbjct: 111 NAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFS 170

Query: 168 ------NNFDEIVLDESKDVLLEIYAPWCGHCQA---FEPTYNKLAKHLRGVDSIVIAKM 218
                   +  I LD       + Y+      +      PTY K  +  + +  ++  + 
Sbjct: 171 KQDKISPVYKSIALDWLGKF--DFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQR 228

Query: 219 DGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPT 278
                            ++ F A    F     +       + KFL+   S     + P 
Sbjct: 229 QSDK-----------SKLVVFDADKDKFWEYEGN-SINKNDISKFLRDTFS-ITPNEGPF 275

Query: 279 SAPKTEKPTSEPKAESSDIKESHES 303
           S  +  +  +  K     IK++H S
Sbjct: 276 S--RRSEYIAYLKTGKKPIKKNHSS 298

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 92.1 bits (228), Expect = 2e-21
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 10/155 (6%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS 60
             +   ++     D  + +  + +FV  ++ P +     E+    +E  +    ++    
Sbjct: 195 FYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAE 254

Query: 61  N---DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY---FGITGEAPKVLAYT 114
               D  + L + ++ A+          V +D +D    V+ +   F I    P++    
Sbjct: 255 RSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVN 314

Query: 115 GNDDAKKHIL----DGELTLDKIKTFGEDFLEGKL 145
             D     +     D   T ++++ + ED L GK+
Sbjct: 315 VTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKI 349

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 69.7 bits (170), Expect = 1e-13
 Identities = 20/147 (13%), Positives = 38/147 (25%), Gaps = 15/147 (10%)

Query: 153 PIPE-TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV- 210
             P       V  +   NF +++  +  DVL   Y       +  +  +      L  V 
Sbjct: 3   NFPTYDGKDRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVA 60

Query: 211 -----DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKF 263
                  I    +D         +   D   ++            I  D +     L +F
Sbjct: 61  QVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDR----TIEFDGEFAADVLVEF 116

Query: 264 LKKNASIPFKIQKPTSAPKTEKPTSEP 290
           L      P +I       +  +   + 
Sbjct: 117 LLDLIEDPVEIINSKLEVQAFERIEDQ 143

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 58.9 bits (142), Expect = 5e-10
 Identities = 37/267 (13%), Positives = 80/267 (29%), Gaps = 34/267 (12%)

Query: 10  SYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPV 69
           +   DG+F    + +F+       V I   +     FE       L+    ++  +    
Sbjct: 101 TIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKA 160

Query: 70  FEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 129
           FEEAA+ F+  + F           K V++   +     +V  Y    D    I D   T
Sbjct: 161 FEEAAEHFQPYIKFFAT------FDKGVAKKLSLKM--NEVDFYEPFMDEPIAIPDKPYT 212

Query: 130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPW 189
            +++     +F++   +P               ++   + F+    D +   ++      
Sbjct: 213 EEELV----EFVKEHQRPTL------------RRLRPEDMFETWEDDLNGIHIVAFAERS 256

Query: 190 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA----------KSDGFPTILFF 239
                 F     ++A+       + I  +D        A                 +   
Sbjct: 257 DPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVT 316

Query: 240 PAGNKSFDPINVDVDRTVVALYKFLKK 266
            A +   +  + D   T   L  +++ 
Sbjct: 317 DADSVWMEIPDDDDLPTAEELEDWIED 343

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 86.3 bits (214), Expect = 3e-21
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
               +    F+E VL      +++ YAPWCG CQ F P +  LA+ ++G   +   K+D 
Sbjct: 4   ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDC 61

Query: 221 TTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVD--RTVVALYKFLKKNAS 269
                   +A    +P++  +         I  +    R    +   +     
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKLE 113

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 85.4 bits (210), Expect = 8e-19
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 150 KSDPIPE--TNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKH 206
              P P     D  V  + G++F  +         ++  Y   CG C+ +  T++K A  
Sbjct: 11  TGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGG 70

Query: 207 LRG------VDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKS 245
           L+       +     A ++  +      +   +  P + FF   +  
Sbjct: 71  LKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSC 117

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 13/110 (11%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHR 227
           +F++ V +     +++         +     +   +K        ++IA +         
Sbjct: 25  SFEKTV-ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELE 81

Query: 228 AK---------SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
            K            FP+I  F      +  +   VD T+  L  F+  N 
Sbjct: 82  NKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT 131

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 58.9 bits (142), Expect = 8e-11
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 172 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---EHHRA 228
           +        +++ I+  WCG C+A +P + +  +      + V+  ++       E    
Sbjct: 40  KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 99

Query: 229 KSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKK 266
                P ILF  P+G    + IN + + +    Y   ++
Sbjct: 100 DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQ 138

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 164 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 223
             +          +   +L++ +APWCG C+   P +   A  L G   + +AK+D   +
Sbjct: 50  AGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAH 107

Query: 224 EHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
                +    G P  + F  G +        + R   A   
Sbjct: 108 PAVAGRHRIQGIPAFILFHKGRE--------LARAAGARPA 140

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 159 DGDVKIVVGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
            G +K       DE +  D+    ++E +A W   CQ+F P Y  L+        +   K
Sbjct: 6   SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGK 64

Query: 218 MDGTTNEHHRAK--------SDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
           +D         +        +   PT++ F  G +          R      K
Sbjct: 65  VDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKE--------AMRRPQIDKK 109

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 13/106 (12%)

Query: 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           DG+V        D+ +L +   ++++ +APWCG C++F P + + A    G   +   K+
Sbjct: 37  DGEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKV 93

Query: 219 DGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
           +         +      PTI+ +  G          +D    A+ K
Sbjct: 94  NTEAEPALSTRFRIRSIPTIMLYRNGKM--------IDMLNGAVPK 131

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 15/116 (12%)

Query: 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           G V+++   +  + V    K V+++ +A WCG C+   P + K++    G D +   K+D
Sbjct: 15  GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD 73

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 269
                    +      PT +FF  G K        +D  V A    L   + ++++
Sbjct: 74  VDEQSQIAQEVGIRAMPTFVFFKNGQK--------IDTVVGADPSKLQAAITQHSA 121

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
           N   +       + + V D  K V++  Y+P C +C+A EP + + AK      S V  +
Sbjct: 4   NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGR 61

Query: 218 MDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
           ++  TN     K    G PT  FF  G          V   V  +Y 
Sbjct: 62  INIATNPWTAEKYGVQGTPTFKFFCHGRP--------VWEQVGQIYP 100

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 57.2 bits (138), Expect = 6e-10
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 148 FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 207
           +++ D     +D ++  +    FD  V +  +   +  Y+P C HC    PT+ + AK +
Sbjct: 85  YYRYDFGIYDDDPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEV 143

Query: 208 RGVDSI--VIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
            G+  I  V    D          S  +P++  F +G      +  + DR+  +L  F  
Sbjct: 144 DGLLRIGAVNCGDDRMLCRMKGVNS--YPSLFIFRSGM---AAVKYNGDRSKESLVAFAM 198

Query: 266 KNASIPFKIQKPTS 279
           +   +   + + ++
Sbjct: 199 Q--HVRSTVTELST 210

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 170 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 229
            +     E    ++      C +C   +   + ++K   G  +I  A+++   N     K
Sbjct: 18  ENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYK 77

Query: 230 SD--GFPTILFFPAGNKSFD 247
            D    PT +F       F 
Sbjct: 78  YDANIVPTTVFLDKEGNKFY 97

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
             V       F + V   +   L++ +APWCG C+   P   +LA+   G   + + K++
Sbjct: 33  PWVVEADEKGFAQEVA-GAPLTLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVN 89

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
              +    A+      PT++ F  G          V   V A  +
Sbjct: 90  VDEHPGLAARYGVRSVPTLVLFRRGAP--------VATWVGASPR 126

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 150 KSDPIPETNDGDVKIVVGN---NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
            +  +      +    V N   N +E   +  K  +++ YA WCG C+   P  ++LAK 
Sbjct: 7   GNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKE 66

Query: 207 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNK 244
             G   IVI K+D    +           P+ILF P   K
Sbjct: 67  YDG--QIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGK 104

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 172 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRA-- 228
            +V  + K V+L++YA WC  C+ FE       +  + +   V+ + + T N     A  
Sbjct: 25  ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALL 84

Query: 229 ---KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
                 G PTILFF    +      V            L+    
Sbjct: 85  KHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP 128

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
           +V+ V  +++ E VL+    V+++ +APWCG C+   P  ++LAK   G   I + K++ 
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNT 58

Query: 221 TTNEHHRAKSD--GFPTILFFPAGNK 244
                   + +    PT+LFF  G +
Sbjct: 59  DEAPGIATQYNIRSIPTVLFFKNGER 84

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 160 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
           G+++ + GN +   V +  +D  V++ +Y      C       + LA+           K
Sbjct: 3   GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPET---KFVK 59

Query: 218 MDGTTNEHHRAKSDGFPTILFFPAGN 243
                +       +  PTI  +  G 
Sbjct: 60  AI-VNSCIQHYHDNCLPTIFVYKNGQ 84

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 18/106 (16%)

Query: 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-----VDSI 213
           DG +  +    F +++     D +L +Y+  C HC    P   + +K +       +   
Sbjct: 15  DGRLIYITPEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGS 71

Query: 214 VIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTV 257
           +I + + +       K+   G PT++F+  G          VD+ V
Sbjct: 72  LIGERELSAARLEMNKAGVEGTPTLVFYKEGRI--------VDKLV 109

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           ++ +  N F++++ DE K  L+      C  CQ   P   +L  +     S     +D  
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVE 63

Query: 222 TNEHHRAKSD--GFPTILFFPAGN 243
             +    +    G P IL+F  G 
Sbjct: 64  EEKTLFQRFSLKGVPQILYFKDGE 87

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
           SDPI   N               + +    VL++ +A WCG CQ        +A+     
Sbjct: 2   SDPIVHFNGTH------EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--- 52

Query: 211 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
             +   K+D   N +          P + F          ++  V   V  +   ++K 
Sbjct: 53  KDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 165 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 224
             G+N    V  ++  ++L  +A WC  C       +KL K+      I + K+D   NE
Sbjct: 29  QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNE 86

Query: 225 HHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK-----FLKKN 267
               K      PTI+               + R    +        +KK+
Sbjct: 87  SLARKFSVKSLPTIILLKNKTM--------LARKDHFVSSNDLIALIKKH 128

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
           S            I  G +F + V++    V+++ +A WCG C+   P   K+     G 
Sbjct: 4   SHHHHHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG- 62

Query: 211 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK-----F 263
             +V+AK+D   +     + +    PT+L    G+         VD+ V    +     F
Sbjct: 63  -KVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDV--------VDKFVGIKDEDQLEAF 113

Query: 264 LKKN 267
           LKK 
Sbjct: 114 LKKL 117

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 156 ETNDGDVKIVV-GNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 213
           E     V+ V     F+E++  ++   +++  +APW   C        +LAK L     +
Sbjct: 8   EAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQV 64

Query: 214 VIAKMD----GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLK 265
              K++       +E +   S   PT LFF    K        +DR   A    L K ++
Sbjct: 65  SFVKLEAEGVPEVSEKYEISS--VPTFLFFKNSQK--------IDRLDGAHAPELTKKVQ 114

Query: 266 KNASIPFKIQKPTSAPKTEKPTSEPKAESSDIKESHES 303
           ++AS    +        T+  +S     ++ ++  H  
Sbjct: 115 RHASSGSFLPSAKVKVDTDPNSSSVDKLAAALEHHHHH 152

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
           S+     +D        ++FD+ VL  S  VL++ +A WCG C+   P   ++ K   G 
Sbjct: 1   SEHTLAVSD--------SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG- 51

Query: 211 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 243
             + +AK++   N            PT++    G 
Sbjct: 52  -KVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGK 85

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           G +K V  ++F++ VL   K VL++ +A WCG C+   P+   +A        I I K++
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLN 62

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGN 243
              N    AK      PT+  +  G 
Sbjct: 63  IDENPGTAAKYGVMSIPTLNVYQGGE 88

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 160 GDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           G V  V  + F  IV     K V+L+++  WCG  +A  P Y KLA+    V   +  K+
Sbjct: 5   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV---IFLKL 61

Query: 219 DGTTNEHHRAKSDG---FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
           D        AK  G    PT       +         V     A Y  L +
Sbjct: 62  DCNQENKTLAKELGIRVVPTFKILKENSV--------VGEVTGAKYDKLLE 104

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 147 PFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 205
               S  +P  +  D +  +  ++FD  VL     +L++ +A WCG  +   P  +++A 
Sbjct: 8   HHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIAD 67

Query: 206 HLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 243
             +G   + +AK++   N     K    G PT+L F  G 
Sbjct: 68  EYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 105

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
             ++   NFDE V+  +K VL++ +A WC  C  +EP Y K+A+  +G    V  +++  
Sbjct: 6   TLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVD 62

Query: 222 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
            N+    K      PT L F  G          VD  V A+ +
Sbjct: 63  ENQKIADKYSVLNIPTTLIFVNGQL--------VDSLVGAVDE 97

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           ++ +          +   D ++  +   C HC+  E   +K       V    I+ +D +
Sbjct: 4   IRDITTEAGMA-HFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQV---AISSVD-S 58

Query: 222 TNEHHRAKSDGF---PTILFFPAG 242
                  K  GF   PT++F   G
Sbjct: 59  EARPELMKELGFERVPTLVFIRDG 82

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 160 GDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           G V  V  + F  IV     K V+L+++  WCG C+A  P Y KLA+    V   +  K+
Sbjct: 18  GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDV---IFLKL 74

Query: 219 DGTTNEHHRAKSDG---FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
           D        AK  G    PT       +         V     A Y  L +
Sbjct: 75  DCNQENKTLAKELGIRVVPTFKILKENSV--------VGEVTGAKYDKLLE 117

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           V  V   NF++ VL   K VL++ +APWCG C+   P   +LAK   G   + + K++  
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVD 60

Query: 222 TNEHHRAKSD--GFPTILFFPAGNK 244
            N +  A+      PT+L F  G  
Sbjct: 61  ENPNTAAQYGIRSIPTLLLFKNGQV 85

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 160 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
           G+++ + GN +   V +  KD  V++ +Y      C       + LA+           K
Sbjct: 10  GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPET---KFVK 66

Query: 218 MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASIPFK 273
                +       +  PTI  +  G      I +     ++  +  L   L +  +I   
Sbjct: 67  AI-VNSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQSD 125

Query: 274 IQKPTSAPKT 283
           + +  S P +
Sbjct: 126 L-EENSGPSS 134

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 25/124 (20%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
           S  +    D          F+  VL   + VL+  +A WCG CQ   P  N  A      
Sbjct: 6   SKGVITITD--------AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD- 56

Query: 211 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA-----LYKF 263
             + + K++   N     K    G P +                +D T        L  F
Sbjct: 57  -RLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQI--------LDSTEGVISKDKLLSF 107

Query: 264 LKKN 267
           L  +
Sbjct: 108 LDTH 111

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
              V  + F  +VL+ S  VL++ +APWCG C+   P  +++A   +    +   K++  
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTD 60

Query: 222 TNEHHRAKSD--GFPTILFFPAGNK 244
            + +  ++      PTI+ F  G K
Sbjct: 61  ESPNVASEYGIRSIPTIMVFKGGKK 85

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
           SD I    D        ++FD  VL     +L++ +A WCG C+   P  +++A   +G 
Sbjct: 1   SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG- 51

Query: 211 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 243
             + +AK++   N     K    G PT+L F  G 
Sbjct: 52  -KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 20/120 (16%)

Query: 160 GDVKIVVG-NNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 215
           G V ++     +D  +    +E K ++++  A WCG C+   P +  L+        ++ 
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIF 59

Query: 216 AKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 269
            K+D          +     PT   +  G K         D  V A    L   + K+A+
Sbjct: 60  LKVDVDAVAAVAEAAGITAMPTFHVYKDGVK--------ADDLVGASQDKLKALVAKHAA 111

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 156 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 215
                 V  V        ++ E    +    A WCG C+  E    K+A       ++  
Sbjct: 15  RARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKF 71

Query: 216 AKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
           AK+D   N    +K      PT +   +G      I  +       L   +K N
Sbjct: 72  AKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKDN 125

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 150 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 209
           +   + ++       V   +F   VL  +K VL++ +A WCG C+   P   ++A     
Sbjct: 2   RWGSMTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT 61

Query: 210 VDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 243
              + +AK+D  TN            PT++ F  G 
Sbjct: 62  --DLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 95

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA-------- 228
             K  LL   A WC  C+A + +               + K+D    + +          
Sbjct: 28  THKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDP 87

Query: 229 KSDGFPTILFF-PAGN 243
             DG P ++     G 
Sbjct: 88  IQDGIPAVVVVNSDGK 103

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
           SD I    D        ++FD  VL     +L++ +A WCG C+   P  +++A   +G 
Sbjct: 11  SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG- 61

Query: 211 DSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 243
             + +AK++   N     K    G PT+L F  G 
Sbjct: 62  -KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 95

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 168 NNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225
           +N  + VL++S    VL   ++    HC    P    LA    G    ++AK+D   +  
Sbjct: 15  SNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLD--CDAE 69

Query: 226 HRAKS----DGFPTILFFPAG 242
               +       PT+  F  G
Sbjct: 70  QMIAAQFGLRAIPTVYLFQNG 90

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
                  ++E + VLL I    CG C       N + ++    + +   ++     +   
Sbjct: 9   EELAT-YIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQEIA 64

Query: 228 AKSD--GFPTILFFPAG 242
            +      PT+L F  G
Sbjct: 65  GRYAVFTGPTVLLFYNG 81

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 168 NNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225
           +  D+  +    D  +LL                  +L +     D   +A  D   +E 
Sbjct: 25  STVDD-WIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD-WQVAVADLEQSEA 82

Query: 226 HRAKSD--GFPTILFFPAG 242
              + +   FP  L F  G
Sbjct: 83  IGDRFNVRRFPATLVFTDG 101

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
                V   NFDE  L +   VL++ +A WC  C+   P   ++AK   G   +++AK+D
Sbjct: 1   AKPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLD 57

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
              N     +      PT++ F  G          V+  V A  K
Sbjct: 58  VDENPKTAMRYRVMSIPTVILFKDGQP--------VEVLVGAQPK 94

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 150 KSDPIPETNDGDVKIVVGN---NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
                      +    + +   +  E      K  +++ YA WCG C+   P   +L+K 
Sbjct: 20  PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKE 79

Query: 207 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNK 244
             G   I I K++                PTI F P   +
Sbjct: 80  YAG--KIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGE 117

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
            +    + FD   + + K V+++ YA WCG C+   P   K ++           K+D  
Sbjct: 9   TQFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADFYKLDVD 64

Query: 222 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTV----VALYKFLKKNA 268
                  K++    PT+L F  G +        V + V     A+ + +  NA
Sbjct: 65  ELGDVAQKNEVSAMPTLLLFKNGKE--------VAKVVGANPAAIKQAIAANA 109

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 17/114 (14%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           VKIV      + ++ +++ V+++ +A WCG C+   P Y + +K       +V  K+D  
Sbjct: 10  VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVD 66

Query: 222 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTV----VALYKFLKKNAS 269
                  K +    PT   +  G+         VD  +     AL + ++K A+
Sbjct: 67  EVSEVTEKENITSMPTFKVYKNGSS--------VDTLLGANDSALKQLIEKYAA 112

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 169 NFDEIVL---DESKDVLLEIYAPWCGHCQAFEPT--YNKLAKHLRGVDSIVIAKMDGTTN 223
           +F E +     E K + ++ +  WCG C+        + L          V  KMD    
Sbjct: 15  SFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEKG 73

Query: 224 EHHRAKSD----GFPTILFFPAGNKSFDPI 249
           E    +       +PT+LF  +  +    +
Sbjct: 74  EGVELRKKYGVHAYPTLLFINSSGEVVYRL 103

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           V  +   NFD   L   +  +++ +A WC  C    P   +LA+       +   K++  
Sbjct: 1   VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSD 56

Query: 222 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
            N    A+      PT++FF  G          VD  + A+ +
Sbjct: 57  ENPDIAARYGVMSLPTVIFFKDGEP--------VDEIIGAVPR 91

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 8/110 (7%)

Query: 172 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVIAKMDGTTNEHHRA 228
           +    E   + L   A  C  CQ  E    +         G D I +      T++    
Sbjct: 16  QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETE 75

Query: 229 KS--DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQK 276
           K   D  PTI+     +     I        +     +     +  +  +
Sbjct: 76  KYGVDRVPTIVIEGDKDY---GIRYIGLPAGLEFTTLINGIFHVSQRKPQ 122

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 24/204 (11%), Positives = 59/204 (28%), Gaps = 30/204 (14%)

Query: 44  SVFESPIKN--QLLLFAVSNDSEK---LLPVFEEAAKSFKGKLI--FVYVQMDNEDVGKP 96
            + +   K    + LF+ +   E       + +E  +     +    + + + +    K 
Sbjct: 13  ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72

Query: 97  VSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPE 156
            +E +G+    P ++     D   ++   G     +  T          +    S+    
Sbjct: 73  ETEKYGVDR-VPTIVIEGDKDYGIRY--IGLPAGLEFTTLINGIFHVSQRKPQLSE---- 125

Query: 157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 216
                         + + + +    +       CG+C +        A      D I   
Sbjct: 126 -----------KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA---NDYITSK 171

Query: 217 KMDGTTNEHHRAKSD--GFPTILF 238
            +D + N+    +    G P I+ 
Sbjct: 172 VIDASENQDLAEQFQVVGVPKIVI 195

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
             +  +        ++ ++  ++++ YA WCG C+  +P   KL +       +   K D
Sbjct: 12  TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY---PDVRFVKCD 68

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
              +     + +    PT +    G          + + + A    L+K
Sbjct: 69  VDESPDIAKECEVTAMPTFVLGKDGQL--------IGKIIGANPTALEK 109

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
              +   NF +  +     VL++ +A WCG C+   P   + A+       + +AK++  
Sbjct: 2   TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVD 58

Query: 222 TNEHHRAKSD--GFPTILFFPAGN 243
            N    ++      PT++ F  G 
Sbjct: 59  ENPETTSQFGIMSIPTLILFKGGR 82

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 12/112 (10%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 162 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           +++    + ++ V   +++  ++++  A WC  C   +  +     +      + +  +D
Sbjct: 23  IELKNTGSLNQ-VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNY----YYVTLVDID 77

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
              +     + +    PT  F+   N  +  ++         + K  +K   
Sbjct: 78  VDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCL 129

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 163 KIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           K+      D+ +   + K ++L         C   +   +K +  L       I  +D  
Sbjct: 7   KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVD 64

Query: 222 TNEH--HRAKSDGFPTILFFPAG 242
                         P+ +FF  G
Sbjct: 65  QTAVYTQYFDISYIPSTVFFFNG 87

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 168 NNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 226
            + D  +   S K V+L+ +A WCG C+   P   +L+      D++V+ K+D    E  
Sbjct: 9   ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDI 66

Query: 227 RAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
             + +    PT +F   G K        V+    A  K L+ 
Sbjct: 67  AMEYNISSMPTFVFLKNGVK--------VEEFAGANAKRLED 100

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 156 ETNDGDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 213
             + G VK +      +  LD + D  V+++  A WCG  +  +P ++ L++    V   
Sbjct: 7   HHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNV--- 63

Query: 214 VIAKMDGTTNEHHRAKSD--GFPTILFFPAGNK 244
           +  ++D    +   ++ +    PT  FF  G K
Sbjct: 64  IFLEVDVDDCQDVASECEVKSMPTFQFFKKGQK 96

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 23/131 (17%)

Query: 159 DGDVKIVVG-NNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 214
           +G V        FD  +    D  K V+++  A WCG C+   P + + AK   G    +
Sbjct: 5   EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA---I 61

Query: 215 IAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 272
             K+D    +      +    PT LF   G K        VD  V      +        
Sbjct: 62  FLKVDVDELKDVAEAYNVEAMPTFLFIKDGEK--------VDSVVGGRKDDIHT------ 107

Query: 273 KIQKPTSAPKT 283
           KI     +  T
Sbjct: 108 KIVALMGSAST 118

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 20/117 (17%)

Query: 162 VKIVVGNNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 218
           +     + FD  +    +  K V+++  A WCG C+   P + + AK   G    V  K+
Sbjct: 17  IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA---VFLKV 73

Query: 219 DGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 269
           D    +    K +    PT LF   G +         D+ V A    L   + K+  
Sbjct: 74  DVDELKEVAEKYNVEAMPTFLFIKDGAE--------ADKVVGARKDDLQNTIVKHVG 122

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 176 DESKDVLLEIYAPWCGHCQAFEP-TYN--KLAKHLRGVDSIVIAKMDGTTNEHHRAKSD- 231
              + V++  ++  C +CQ       +   +++ L      V+A +   T E        
Sbjct: 17  AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE--ARFVVASVSVDTPEGQELARRY 74

Query: 232 ---GFPTILFFPAGNKSFDPI 249
              G PT +F      +++ +
Sbjct: 75  RVPGTPTFVFLVPKAGAWEEV 95

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           +  V   +FD  V       L++ +A  CG C+   P   +LA    G     I K+D  
Sbjct: 5   IVKVTDADFDSKVES--GVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVD 60

Query: 222 TNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
            N    AK +    PT++ F  G          VD+ V    K
Sbjct: 61  ENPSTAAKYEVMSIPTLIVFKDGQP--------VDKVVGFQPK 95

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 169 NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           + ++++ + + + ++++ +A WCG C+   P    LAK +     +  AK+D   NE   
Sbjct: 9   DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI---PEVEFAKVDVDQNEEAA 65

Query: 228 AKSD--GFPTILFFPAGNK 244
           AK      PT +F   G +
Sbjct: 66  AKYSVTAMPTFVFIKDGKE 84

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 169 NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 227
           +F   +    S+  +++     CG C    P ++ ++         V  ++D    +   
Sbjct: 11  DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQA---VFLEVDVHQCQGTA 67

Query: 228 AKSD--GFPTILFFPAGNK 244
           A ++    PT  FF    +
Sbjct: 68  ATNNISATPTFQFFRNKVR 86

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 160 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 217
            ++  +  +   E +L++ K+  V+++ +A WCG C+   P + +L++        +  K
Sbjct: 13  SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVK 68

Query: 218 MDGTTNEHHRAKSD--GFPTILFFPAGNK 244
           +D    E    K +    PT +    G K
Sbjct: 69  VDVDKLEETARKYNISAMPTFIAIKNGEK 97

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 162 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           VK +      +  LD + D  V+++  A WCG C+  +P ++ L++    V   +  ++D
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV---IFLEVD 58

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGNK 244
               +   ++S+    PT  FF  G K
Sbjct: 59  VDDCQDVASESEVKSMPTFQFFKKGQK 85

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 22/109 (20%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD----GTTNE 224
           +F++      K ++++  A WC  C+   P + +LAK      ++   K+D        E
Sbjct: 18  HFEK-GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAVAE 73

Query: 225 HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA----LYKFLKKNAS 269
               ++   PT +F   G          VD+TV A    L   + K+A+
Sbjct: 74  EWNVEA--MPTFIFLKDGKL--------VDKTVGADKDGLPTLVAKHAT 112

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 156 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG----VD 211
             N  D+++       E + D+ +     I    C +C+ F  T + +    +     ++
Sbjct: 8   LDNIKDLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFIN 66

Query: 212 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 264
           S   ++++       R      P  +    G  +   +  D   +   +  F 
Sbjct: 67  SEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQIN---VRCDSSMSAQEIKDFA 116

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 25/127 (19%)

Query: 155 PETNDGDVKIVVG-NNFDEI---VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
             + +G V        ++E      +    V+++  A WCG C+   P +  LAK L  V
Sbjct: 11  MASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNV 70

Query: 211 DSIVIAKMD----GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA----LYK 262
              +  K+D     +       ++   PT +F   G          +D+ V A    L  
Sbjct: 71  ---LFLKVDTDELKSVASDWAIQA--MPTFMFLKEGKI--------LDKVVGAKKDELQS 117

Query: 263 FLKKNAS 269
            + K+ +
Sbjct: 118 TIAKHLA 124

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 27/138 (19%)

Query: 151 SDPIPETNDGDVKIVV-GNNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
           +         +V  V     +   +       K V+++  A WCG C+   P +  LAK 
Sbjct: 3   ASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKK 62

Query: 207 LRGVDSIVIAKMD----GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 262
                  V  K+D        E    ++   PT LF   G+          DR V A+ +
Sbjct: 63  FPNA---VFLKVDVDELKPIAEQFSVEA--MPTFLFMKEGDV--------KDRVVGAIKE 109

Query: 263 FLKKNASIPFKIQKPTSA 280
            L        K+    +A
Sbjct: 110 ELTA------KVGLHAAA 121

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 26/109 (23%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCG--------------HCQAF 196
           SD I    D        ++FD  VL     +L++ +A WCG               C+  
Sbjct: 2   SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMI 53

Query: 197 EPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 243
            P  +++A   +G   + +AK++   N     K    G PT+L F  G 
Sbjct: 54  APILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           +      +F     +    VL + +APWCG  +   P   +L + +     + I K+D  
Sbjct: 3   IVKATDQSFSAETSE--GVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVD 58

Query: 222 TNEHHRAKSD--GFPTILFFPAGN 243
            N+    K      PT+L    G 
Sbjct: 59  ENQETAGKYGVMSIPTLLVLKDGE 82

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 228
            +        K ++L  +  W   C+A +  +  ++      + +    +D   N     
Sbjct: 12  TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN-VSFLSIDADENSEISE 70

Query: 229 KSD--GFPTILFFPAGNK 244
             +    P  +    G  
Sbjct: 71  LFEISAVPYFIIIHKGTI 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 65/275 (23%)

Query: 64  EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 123
           + +L VFE+A   F        V    +D+ K +     ++ E    +  + +  +    
Sbjct: 19  KDILSVFEDA---FVDNFDCKDV----QDMPKSI-----LSKEEIDHIIMSKDAVSGTLR 66

Query: 124 LDGELTLDKIKTFGEDFLEGKLKPFFK--SDPI-PETNDGDVKIVVGNNFDEIVLDESKD 180
           L   L L K +   + F+E  L+  +K    PI  E            +    +  E +D
Sbjct: 67  LFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--------PSMMTRMYIEQRD 117

Query: 181 VLL---EIYAPWCGHCQAFEPTYNKLAKHLRGVDS---IVIAKMDGTTNEHHRAKS---- 230
            L    +++A +  +    +P Y KL + L  +     ++I  + G+       K+    
Sbjct: 118 RLYNDNQVFAKY--NVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS------GKTWVAL 168

Query: 231 ---DGFPTILFFPAGNKSF--DPINVDVDRTVV----ALYKFLKKNASIPFKIQKPTSAP 281
                +          K F  +  N +   TV+     L   +  N +      +   + 
Sbjct: 169 DVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-----SRSDHSS 221

Query: 282 KTEKPTSEPKAESSDI--KESHESS---SDKDVKD 311
             +      +AE   +   + +E+       +V++
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN 255

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 151 SDPIPETNDGDVKIVVG-NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 206
            +P  E   G+V ++     +D+ +     + K VL    A WCG  +   P Y +L+++
Sbjct: 15  DEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSEN 74

Query: 207 LRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 264
              +   +   +D        A  +    PT  F   G +        VD+ V A    L
Sbjct: 75  YPSL---MFLVIDVDELSDFSASWEIKATPTFFFLRDGQQ--------VDKLVGANKPEL 123

Query: 265 KKNASIPFKIQK-PTSAPKTEK 285
            K      KI     S P ++K
Sbjct: 124 HK------KITAILDSLPPSDK 139

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD----GF 233
           SK  +    +P C HC A +    ++A  +    ++ +  ++    E+ +   +      
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYIN--VMENPQKAMEYGIMAV 57

Query: 234 PTILFFPAG 242
           PTI+     
Sbjct: 58  PTIVINGDV 66

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 172 EIVLDESKDVLLEIYAPWCGHCQAFEPTY--NKLAKHLRGVDSIVIAKMDGTTNEHHRAK 229
                  K +++  +   C + QA +  +  N+  + +     I++  M  TT+++    
Sbjct: 38  FYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPD 97

Query: 230 SDGFPTILFF-PAGNKSFDPIN 250
               P I+F  P+     D   
Sbjct: 98  GQYVPRIMFVDPSLTVRADIAG 119

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 164 IVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           +  G  F E +  E K   +++ IY      C A   +   LA     V      K+  +
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMV---KFCKIKAS 173

Query: 222 TNE-HHRAKSDGFPTILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASIPFKIQK 276
                 R  SD  PT+L +  G    + I+V      +     +  FL +   +P K   
Sbjct: 174 NTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEMH 233

Query: 277 PTSAPKTE 284
                  E
Sbjct: 234 VLEQTNME 241

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 30/204 (14%), Positives = 57/204 (27%), Gaps = 28/204 (13%)

Query: 46  FESPIKNQLLLFAVSNDSEK---LLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFG 102
             +P+K  L++F   +  +    L  + +E +     KL +  V  D  +  +    Y  
Sbjct: 20  MVNPVK--LIVFVRKDHCQYCDQLKQLVQELS-ELTDKLSYEIVDFDTPEGKELAKRY-- 74

Query: 103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDV 162
              +       T +         G     +   F ED ++        S       D   
Sbjct: 75  -RIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVD-------VSREETNLMD--- 123

Query: 163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK--HLRGVDSIVIAKMDG 220
                     I   +    +L    P C +C       +K A      G   I+   ++ 
Sbjct: 124 -----ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA 178

Query: 221 TTNEHHRAKSD--GFPTILFFPAG 242
                   + +    P I+    G
Sbjct: 179 IEYPEWADQYNVMAVPKIVIQVNG 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.97
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.95
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.95
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.93
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.91
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.91
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.9
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.89
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.86
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.83
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.83
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.82
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.82
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.82
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.81
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.81
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.8
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.79
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.78
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.78
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.77
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.76
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.76
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.76
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.75
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.75
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.75
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.75
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.74
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.74
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.74
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.73
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.73
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.73
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.73
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.73
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.73
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.73
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.73
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.72
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.72
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.72
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.72
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.72
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.72
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.72
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.72
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.72
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.71
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.71
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.71
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.71
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.71
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.71
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.71
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.71
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.7
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.7
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.7
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.69
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.69
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.69
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.69
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.68
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.68
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.67
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.67
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.66
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.66
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.66
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.66
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.66
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.66
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.66
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.65
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.65
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.65
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.65
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.65
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.65
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.64
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.64
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.64
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.64
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.63
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.63
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.63
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.63
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.63
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.63
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.62
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.61
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.6
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.6
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.6
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.6
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.6
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.39
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.6
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.59
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.59
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.59
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.58
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.58
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.58
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.57
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.57
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.57
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.57
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.54
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.54
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.54
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.54
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.53
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.53
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.53
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.53
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.52
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.52
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.52
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.52
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.52
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.52
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.52
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.51
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.51
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.51
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.51
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.51
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.5
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.5
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.5
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.5
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.49
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.49
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.49
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.49
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.49
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.49
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.49
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.49
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.48
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.48
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.48
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.47
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.47
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.47
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.46
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.46
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.46
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.46
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.46
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.46
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.45
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.45
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.45
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.45
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.44
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.44
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.44
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.43
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.43
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.43
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.42
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.42
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.42
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.42
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.42
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.41
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.41
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.4
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.39
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.39
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.39
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.39
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.39
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.39
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.09
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.38
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.37
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.36
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.36
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.36
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.36
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.35
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.33
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.33
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.31
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.31
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.31
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.3
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.3
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.29
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.29
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.28
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.27
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.27
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.27
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.92
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.25
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.25
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.25
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.25
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.24
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.24
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.24
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.23
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.23
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.22
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.22
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.21
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.21
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.21
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.2
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.2
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.19
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.19
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.19
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.18
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.18
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.17
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.16
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.16
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.16
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.16
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.15
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.15
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.13
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.13
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.13
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.12
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.12
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.11
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.11
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.1
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.09
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.08
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.08
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.07
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.06
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.63
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.05
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.05
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	99.04
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.04
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.03
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.03
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.03
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.02
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.99
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.99
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.99
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.98
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.97
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.96
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.95
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.95
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.94
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.93
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.93
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.91
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.91
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.9
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.9
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.89
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.88
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.87
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	98.87
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.85
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.85
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.84
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.83
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.82
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.82
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.82
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.8
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.8
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.79
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.79
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.79
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.27
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.75
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.74
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.74
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.72
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.72
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.71
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.71
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.7
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.7
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.69
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.69
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.15
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.68
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.67
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.66
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.66
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.66
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.65
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.64
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.64
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.64
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.63
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.63
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.63
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.59
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.58
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.56
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.56
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.55
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.55
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.55
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.54
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.53
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.53
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.52
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.52
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.49
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.49
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.47
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.47
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.45
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.45
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.45
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.43
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.41
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.4
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.4
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.4
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.39
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.39
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.38
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.37
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.37
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.35
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.34
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.34
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.32
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.3
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.3
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.29
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.28
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.28
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.27
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.26
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.23
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.2
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.2
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.18
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.18
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.18
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.17
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.16
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.16
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.16
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.14
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.14
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.14
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.12
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.1
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.1
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.09
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.04
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.03
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.03
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.02
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.98
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.98
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.98
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	97.97
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.94
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	97.94
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.94
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.91
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	97.91
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.89
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.12
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.88
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.88
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.86
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.85
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.83
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.8
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.8
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	97.8
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	97.76
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	96.96
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	97.74
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.73
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	97.73
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	97.72
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.71
3me7_A	170	Putative uncharacterized protein; electron transfe	97.7
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.7
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.69
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.66
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.64
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.62
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	97.62
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.62
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	97.62
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.61
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	97.6
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	97.59
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.53
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.53
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.52
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.51
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	97.5
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.5
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.47
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.46
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.46
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	97.45
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.42
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.4
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.39
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.38
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.35
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.34
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.33
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.33
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.32
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.31
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.31
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.3
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	97.3
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.29
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.27
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.27
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	97.27
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.27
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.23
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	97.21
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.21
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.16
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.16
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.15
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.1
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.09
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.02
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.01
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.98
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.91
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	96.87
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	96.86
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	96.83
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	96.81
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	96.77
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	96.76
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.63
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	96.54
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	96.53
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	96.52
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	96.42
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	96.39
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	96.32
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	96.27
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	96.25
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	96.21
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	96.2
1kte_A	105	Thioltransferase; redox-active center, electron tr	96.19
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	96.12
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	96.11
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	96.1
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.09
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	96.09
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	95.99
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	95.94
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	95.88
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	95.84
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	95.73
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	95.72
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	95.64
3me7_A	170	Putative uncharacterized protein; electron transfe	95.63
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	95.62
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	95.6
1z6m_A	175	Conserved hypothetical protein; structural genomic	95.57
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	95.54
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	95.54
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	95.43
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	95.43
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	95.15
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	95.05
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	95.04
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	95.04
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	95.04
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	95.02
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	94.98
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	94.97
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	94.95
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	94.58
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	94.57
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	94.43

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=100.00  E-value=1.2e-41  Score=307.39  Aligned_cols=267  Identities=38%  Similarity=0.699  Sum_probs=237.6

Q ss_pred             CCcccCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCC-ccEEEEEeeC-CchhhhhHHHHHHHHhcc
Q 021368            1 MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFK   78 (313)
Q Consensus         1 ~~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~-~~~v~f~~~~-~~c~~~~~~~~~~a~~~~   78 (313)
                      |||+.|+..+.| +|+++..+|.+||..++.|+|.+++++++..++.... .++++||++| ++|+++.+.|+++|.+|+
T Consensus        87 lfk~f~~~~~~~-~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~  165 (361)
T 3uem_A           87 LFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK  165 (361)
T ss_dssp             EEESSTTSEEEC-CSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGT
T ss_pred             EEEecCCCcccc-CCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHcc
Confidence            478888999999 9999999999999999999999999999999887654 4567799999 999999999999999999


Q ss_pred             CeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC-CceeccC-CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021368           79 GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPE  156 (313)
Q Consensus        79 ~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~~~~~-g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~  156 (313)
                      +++.|+.|||+... ++.+|+.|||.+...|+++++..+. ..+|.+. |.++.++|.+|+.+++.|++++..+|+++|+
T Consensus       166 ~~i~f~~vd~~~~~-~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~  244 (361)
T 3uem_A          166 GKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPE  244 (361)
T ss_dssp             TTCEEEEECTTSGG-GHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCT
T ss_pred             CceEEEEecCChHH-HHHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCc
Confidence            99999999999433 7799999999982239999998744 3455543 7899999999999999999999999999998


Q ss_pred             C-CCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCce
Q 021368          157 T-NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT  235 (313)
Q Consensus       157 ~-~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~  235 (313)
                      . ....|..+++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+++...+.++.+|++.+...+++|.++|+
T Consensus       245 ~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt  324 (361)
T 3uem_A          245 DWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPT  324 (361)
T ss_dssp             TTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCBCSSCCCCSSSE
T ss_pred             ccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccchhhcCCcccCe
Confidence            6 578899999999999998889999999999999999999999999999998866799999999999989999999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      +++|++|... .+..|.|.++.+.|.+||+++...
T Consensus       325 ~~~~~~~~~~-~~~~~~G~~~~~~l~~~l~~~~~~  358 (361)
T 3uem_A          325 LKFFPASADR-TVIDYNGERTLDGFKKFLESGGQD  358 (361)
T ss_dssp             EEEECSSSSC-CCEECCSCSSHHHHHHHHTTTSCS
T ss_pred             EEEEECCCCc-ceeEecCCCCHHHHHHHHHhcCCC
Confidence            9999777443 567999999999999999998643

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=3.8e-34  Score=267.79  Aligned_cols=262  Identities=34%  Similarity=0.563  Sum_probs=229.7

Q ss_pred             ccCCcccccCC-CCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC-C-c---hhhhhHHHHHHHHhc
Q 021368            4 KETEKISYFAD-GKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS-N-D---SEKLLPVFEEAAKSF   77 (313)
Q Consensus         4 ~~~~~~~~y~~-g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~-~---c~~~~~~~~~~a~~~   77 (313)
                      +.++..+.| + |.++..+|.+||..+..|++.++|.+++..+...  +.++.|+... . .   ++.+...+.++|.+|
T Consensus       190 ~~~~~~~~y-~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~  266 (481)
T 3f8u_A          190 KFEDKTVAY-TEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK--DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKF  266 (481)
T ss_dssp             TTBCSEEEC-CCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHHTTS--SEEEEEECCCTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccc-CCCCCCHHHHHHHHHHhCCCCccccChhHHHHhcCC--CceEEEEecccccchhhHHHHHHHHHHHHHHh
Confidence            567888999 8 7899999999999999999999999999988754  4555565543 2 2   234688899999999


Q ss_pred             cCe---EEEEEEeCCCcccccchhhhhCCCCC--CCcEEEEEcCCCCceeccCCCCCHH--HHHHHHHHHhcCCCCCCCC
Q 021368           78 KGK---LIFVYVQMDNEDVGKPVSEYFGITGE--APKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPFFK  150 (313)
Q Consensus        78 ~~~---v~f~~vd~~~~~~~~~l~~~~~v~~~--~~P~i~~~~~~~~~~~~~~g~~~~~--~i~~fi~~~~~~~~~~~~~  150 (313)
                      .++   +.|+.+|+.+   +..+++.||+...  ..|.++++.. ...+|.+.+..+.+  +|.+|+.+++.|++.++++
T Consensus       267 ~~k~~~i~F~~~D~~~---~~~~l~~~gl~~~~~~~P~~~i~~~-~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~~~~~  342 (481)
T 3f8u_A          267 LDAGHKLNFAVASRKT---FSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLK  342 (481)
T ss_dssp             HHTTCCCEEEEEETTT---THHHHGGGTCCCCTTCSCEEEEECS-SSCEEECCSCCCTTSHHHHHHHHHHHHTCCCCCCC
T ss_pred             cCCCceEEEEEEcHHH---HHHHHHHcCCCcccCCCcEEEEEcC-CCcccCCCcccCccHHHHHHHHHHHhcCCcccccc
Confidence            998   9999999988   5588899999832  4699998873 34678888889999  9999999999999999999


Q ss_pred             CCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCC
Q 021368          151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAK  229 (313)
Q Consensus       151 s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~  229 (313)
                      |+++|......|..+++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+++..++.++.+|++.++. ..++
T Consensus       343 s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~~~~~~~  422 (481)
T 3f8u_A          343 SEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYE  422 (481)
T ss_dssp             CCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSCCCTTCC
T ss_pred             cCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchhhHhhCC
Confidence            999999888999999999999999877899999999999999999999999999999886679999999999866 6899


Q ss_pred             CCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCcc
Q 021368          230 SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       230 v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  273 (313)
                      +.++||+++|++|..+ .+..|.|..+.+.|.+||.++++.+..
T Consensus       423 v~~~Pt~~~~~~~~~~-~~~~~~G~~~~~~l~~~l~~~~~~~~~  465 (481)
T 3f8u_A          423 VRGFPTIYFSPANKKL-NPKKYEGGRELSDFISYLQREATNPPV  465 (481)
T ss_dssp             CCSSSEEEEECTTCTT-SCEECCSCCSHHHHHHHHHHHCSSCCC
T ss_pred             CcccCEEEEEeCCCeE-eeeEeCCCCCHHHHHHHHHHhcCCccc
Confidence            9999999999998875 567999999999999999999875554

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=1.6e-34  Score=271.88  Aligned_cols=266  Identities=30%  Similarity=0.486  Sum_probs=232.6

Q ss_pred             CcccCCcccccCCCC-C---CHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhc
Q 021368            2 VKKETEKISYFADGK-F---DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSF   77 (313)
Q Consensus         2 ~~~~~~~~~~y~~g~-~---~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~   77 (313)
                      +|..+ ..+.| +|+ +   +..+|..||..+..|.+.++|.+++..++..+....++|+.....-+.+...|+++|.++
T Consensus       189 ~~~~~-~~~~~-~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~~  266 (504)
T 2b5e_A          189 PSAMD-EPVVY-NGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKN  266 (504)
T ss_dssp             TTEEE-EEEEC-CSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCC-ccccc-CCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCCCcEEEEEecCcccHHHHHHHHHHHHHhc
Confidence            45545 77889 999 7   999999999999999999999999999998887766667655422378999999999999


Q ss_pred             cCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC--CC-----------CCHHHHHHHHHHHhcCC
Q 021368           78 KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD--GE-----------LTLDKIKTFGEDFLEGK  144 (313)
Q Consensus        78 ~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~--g~-----------~~~~~i~~fi~~~~~~~  144 (313)
                      .+++.|+++||+.   .+.+|+.||+ ....|++++++.....+|.+.  +.           .+.+.|..|+.+++.|+
T Consensus       267 ~~~i~F~~id~~~---~~~~~~~~gl-~~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~  342 (504)
T 2b5e_A          267 RGLMNFVSIDARK---FGRHAGNLNM-KEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD  342 (504)
T ss_dssp             TTTCEEEEEEHHH---HTTHHHHTTC-CSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTC
T ss_pred             CCeeEEEEEehhh---hHHHHHHcCC-cccCCEEEEEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCC
Confidence            9999999999987   5689999999 655699999987655667665  55           88999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhc-CCCcEEEEEEeCCCc
Q 021368          145 LKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTN  223 (313)
Q Consensus       145 ~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~-~~~~v~~~~vd~~~~  223 (313)
                      +.+..+|+++|....+.|..+++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+. ....+.++.+|++.+
T Consensus       343 ~~p~~~s~~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~  422 (504)
T 2b5e_A          343 ASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN  422 (504)
T ss_dssp             CCCCCCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC
T ss_pred             CChhhhcCCCCccccccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcc
Confidence            9999999999988888999999999999998889999999999999999999999999999987 334799999999988


Q ss_pred             ccccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021368          224 EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       224 ~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      ....+++.++||+++|++|... .+..|.|..+.+.|.+||++++......
T Consensus       423 ~~~~~~v~~~Pt~~~~~~G~~~-~~~~~~G~~~~~~l~~~i~~~~~~~~~~  472 (504)
T 2b5e_A          423 DVRGVVIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENGHFDVDG  472 (504)
T ss_dssp             CCSSCCCSSSSEEEEECCTTSC-CCCBCCSCCCHHHHHHHHHHHCTTCCCH
T ss_pred             ccccCCceecCeEEEEeCCcee-cceEecCCCCHHHHHHHHHhcCCCCCCH
Confidence            7755999999999999988764 4568999999999999999998766543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=100.00  E-value=4.6e-33  Score=237.02  Aligned_cols=219  Identities=21%  Similarity=0.390  Sum_probs=192.0

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe---EEEEEEeCCCcccccchhhhhCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK---LIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~---v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .+.+..|+.++|+..+..+..++|.||++| ++|+.+.|.|.+++.++.+.   +.|+.|||+.   ++.+|++|||+++
T Consensus        14 ~~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~   90 (241)
T 3idv_A           14 ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS---ASVLASRFDVSGY   90 (241)
T ss_dssp             ETTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT---CHHHHHHTTCCSS
T ss_pred             CCCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC---CHHHHHhcCCCcC
Confidence            346899999999999988889999999999 99999999999999999876   9999999998   6699999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEe
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY  186 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy  186 (313)
                        |+++++++|.  ...+.|.++.+.|.+|+.+.+.....          .....+..++.++|++.+ ..+++++|+||
T Consensus        91 --Pt~~~~~~g~--~~~~~g~~~~~~l~~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~v~f~  155 (241)
T 3idv_A           91 --PTIKILKKGQ--AVDYEGSRTQEEIVAKVREVSQPDWT----------PPPEVTLVLTKENFDEVV-NDADIILVEFY  155 (241)
T ss_dssp             --SEEEEEETTE--EEECCSCSCHHHHHHHHHHHHSTTCC----------CCCCSSEECCTTTHHHHH-HHCSEEEEEEE
T ss_pred             --CEEEEEcCCC--cccccCcccHHHHHHHHhhccCcccc----------cccccceeccHHHHHHhh-ccCCeEEEEEE
Confidence              9999997664  45689999999999999998763221          123567889999999988 45789999999


Q ss_pred             CCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHH
Q 021368          187 APWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKF  263 (313)
Q Consensus       187 ~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~f  263 (313)
                      ++||++|+.+.+.|.+++..+++. ..+.++.+|++.+..  .+|+|.++|++++|++|+.+    .|.|..+.+.|.+|
T Consensus       156 a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~----~~~g~~~~~~l~~~  231 (241)
T 3idv_A          156 APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPY----DYNGPREKYGIVDY  231 (241)
T ss_dssp             CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE----ECCSCCSHHHHHHH
T ss_pred             CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCeEE----EecCCCCHHHHHHH
Confidence            999999999999999999999763 459999999998865  78999999999999988654    69999999999999


Q ss_pred             HHhcCCCC
Q 021368          264 LKKNASIP  271 (313)
Q Consensus       264 i~~~~~~~  271 (313)
                      |+++++..
T Consensus       232 l~~~~~~~  239 (241)
T 3idv_A          232 MIEQSGAA  239 (241)
T ss_dssp             HHHHTTCT
T ss_pred             HHhhhCCC
Confidence            99997643

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=2.7e-32  Score=269.24  Aligned_cols=239  Identities=19%  Similarity=0.280  Sum_probs=212.5

Q ss_pred             CcccC-CcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC
Q 021368            2 VKKET-EKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG   79 (313)
Q Consensus         2 ~~~~~-~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~   79 (313)
                      ++..+ +.+..| .|+++..+|..|+..+..+.|.+++.++|..+  .+..++|.||++| ++|+.+.|.|.++|.++++
T Consensus       410 ~~~~~~e~~~~~-~g~~~~~~i~~f~~~~~~~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~  486 (780)
T 3apo_A          410 FKGQGTKEYEIH-HGKKILYDILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYG  486 (780)
T ss_dssp             EESSTTSSEEEC-CSCCCHHHHHHHHHHHHTSCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCCcceeeec-ccHhhHHHHHHHhhhccCCCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC
Confidence            44555 568889 99999999999999999999999999999988  5668899999999 9999999999999999998


Q ss_pred             eEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 021368           80 KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETND  159 (313)
Q Consensus        80 ~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~  159 (313)
                      ++.|+.|||++   +..+|+.|||+++  |+++++++|.  .+.|.|.++.++|.+|+.+++.                 
T Consensus       487 ~v~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~~~g~--~~~~~g~~~~~~l~~fi~~~~~-----------------  542 (780)
T 3apo_A          487 QLKVGTLDCTI---HEGLCNMYNIQAY--PTTVVFNQSS--IHEYEGHHSAEQILEFIEDLRN-----------------  542 (780)
T ss_dssp             TCEEEEEETTT---CHHHHHHTTCCSS--SEEEEEETTE--EEEECSCSCHHHHHHHHHHHHS-----------------
T ss_pred             CeEEEEEeCCC---CHHHHHHcCCCcC--CeEEEEcCCc--eeeecCcccHHHHHHHHHhhcc-----------------
Confidence            99999999998   5699999999998  9999997653  4778999999999999999986                 


Q ss_pred             CCeEEEcCcChHHHhhcC--CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          160 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~--~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      +.|..|+.++|++++.+.  ++.++|.||+|||++|+.+.+.|.++|..+++  .+.|+.+||+.+..  ..+++.++|+
T Consensus       543 ~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt  620 (780)
T 3apo_A          543 PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYPE  620 (780)
T ss_dssp             CSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             cceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--CeEEEEEECcchHHHHHHcCCCCCCe
Confidence            458889999999988653  46789999999999999999999999999987  69999999998765  6899999999


Q ss_pred             EEEEeCCCCC-cCceeecc-CcCHHHHHHHHHhcCC
Q 021368          236 ILFFPAGNKS-FDPINVDV-DRTVVALYKFLKKNAS  269 (313)
Q Consensus       236 i~~~~~g~~~-~~~~~y~g-~~~~~~l~~fi~~~~~  269 (313)
                      +++|+.|... ..++.|.| .++.+.|.+||.+.+.
T Consensus       621 i~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  656 (780)
T 3apo_A          621 IRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP  656 (780)
T ss_dssp             EEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSC
T ss_pred             EEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcc
Confidence            9999887652 14668999 8999999999999874

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.97  E-value=2.1e-31  Score=262.92  Aligned_cols=235  Identities=16%  Similarity=0.305  Sum_probs=208.0

Q ss_pred             CcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccC---CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEE
Q 021368            7 EKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLI   82 (313)
Q Consensus         7 ~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~---~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~   82 (313)
                      +....| .|.++..+|..|+.....+.|..|+.++|++++..   ...++|.||++| ++|+++.|.|+++|..+++.+.
T Consensus       519 g~~~~~-~g~~~~~~l~~fi~~~~~~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~  597 (780)
T 3apo_A          519 SSIHEY-EGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLIN  597 (780)
T ss_dssp             TEEEEE-CSCSCHHHHHHHHHHHHSCSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSE
T ss_pred             Cceeee-cCcccHHHHHHHHHhhcccceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCeE
Confidence            455788 99999999999999998899999999999997754   345688999999 9999999999999999999999


Q ss_pred             EEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCC---ceeccCC-CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 021368           83 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA---KKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN  158 (313)
Q Consensus        83 f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~---~~~~~~g-~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~  158 (313)
                      |+.+||+.   +..+|+.++|.++  |+++++..+..   ....|.| .++.++|.+|+.+.+.                
T Consensus       598 ~~~vd~~~---~~~l~~~~~v~~~--Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~----------------  656 (780)
T 3apo_A          598 VGSVDCGQ---YHSFCTQENVQRY--PEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP----------------  656 (780)
T ss_dssp             EEEEETTT---THHHHHHTTCCSS--SEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSC----------------
T ss_pred             EEEEECcc---hHHHHHHcCCCCC--CeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcc----------------
Confidence            99999998   6699999999998  99999987653   2456899 8999999999998753                


Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                       ..+..++.++|.+.+...+++++|+||++||++|+.+.|.|.+++..+++  ++.++.+|++.+..  .+++|.++|++
T Consensus       657 -~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~  733 (780)
T 3apo_A          657 -QASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSV  733 (780)
T ss_dssp             -CCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             -cccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CceEEEEECCCCHHHHHhcCCCcCCEE
Confidence             34778999999988877889999999999999999999999999999976  69999999998865  78999999999


Q ss_pred             EEEeCCCCCcCceeecc----CcCHHHHHHHHHhcCC
Q 021368          237 LFFPAGNKSFDPINVDV----DRTVVALYKFLKKNAS  269 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~~  269 (313)
                      ++|++|..+.   ++.|    ..+.+.|.+||.+++.
T Consensus       734 ~~~~~g~~~~---~~~G~~~g~~~~~~l~~~l~~~l~  767 (780)
T 3apo_A          734 KLYQYERAKK---SIWEEQINSRDAKTIAALIYGKLE  767 (780)
T ss_dssp             EEEEEETTTT---EEEEEEECCCCHHHHHHHHHHHTT
T ss_pred             EEEcCCCccc---cccCcccCCcCHHHHHHHHHHHHH
Confidence            9999888764   4555    5799999999999973

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.95  E-value=2.3e-28  Score=206.04  Aligned_cols=195  Identities=14%  Similarity=0.167  Sum_probs=160.2

Q ss_pred             ccEEEEEee-C-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCC
Q 021368           51 KNQLLLFAV-S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL  128 (313)
Q Consensus        51 ~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~  128 (313)
                      ..+++||++ | ++|+.+.|.|+++|.. .+++.|+.|||++.. ++++|++|||.++  |+++++.+|......|.|.+
T Consensus        24 v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~-~~~~~~~~~v~~~--Pt~~~~~~g~~~~~~~~G~~   99 (226)
T 1a8l_A           24 VKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPE-GKELAKRYRIDRA--PATTITQDGKDFGVRYFGLP   99 (226)
T ss_dssp             EEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHH-HHHHHHHTTCCSS--SEEEEEETTBCCSEEEESCC
T ss_pred             eEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcc-cHHHHHHcCCCcC--ceEEEEcCCceeeEEEeccC
Confidence            456779999 9 9999999999999965 566999999999732 4599999999988  99999977654446788989


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcE-EEEEeCCCCccchhhhHHHHHHHHHh
Q 021368          129 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHL  207 (313)
Q Consensus       129 ~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~-lv~fy~~~C~~C~~~~~~~~~la~~~  207 (313)
                      +.+.+..|+...+....               .+..++.++++.+. ..++++ +|.||++||++|+.+.|.|.+++..+
T Consensus       100 ~~~~l~~~l~~~l~~~~---------------~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~  163 (226)
T 1a8l_A          100 AGHEFAAFLEDIVDVSR---------------EETNLMDETKQAIR-NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIEN  163 (226)
T ss_dssp             CTTHHHHHHHHHHHHHH---------------TCCCCCHHHHHHHT-TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcC---------------CCCCCCHHHHHHHH-hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhc
Confidence            99999999988764211               12346667777754 445566 99999999999999999999999998


Q ss_pred             cC--CCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          208 RG--VDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       208 ~~--~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .+  ..++.++.+|++.+..  .+|++.++|++++|++|+...   .|.|..+.+.|.+||++.+
T Consensus       164 ~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          164 TKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRV---EFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             ccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCceeE---EEcCCCCHHHHHHHHHHhh
Confidence            72  1369999999998765  789999999999999887653   8999999999999998764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.95  E-value=2.4e-27  Score=200.27  Aligned_cols=190  Identities=13%  Similarity=0.101  Sum_probs=157.9

Q ss_pred             CCccEEEEE-----eeC-CchhhhhHHHHHHHHhc--cCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCc
Q 021368           49 PIKNQLLLF-----AVS-NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  120 (313)
Q Consensus        49 ~~~~~v~f~-----~~~-~~c~~~~~~~~~~a~~~--~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~  120 (313)
                      ..+++|.||     ++| ++|+.+.|.|.++|..+  .+++.|+.|||+.   ++.+|++|||+++  |++++|+++ ..
T Consensus        20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Ptl~~~~~~-~~   93 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFT---HKEETEKYGVDRV--PTIVIEGDK-DY   93 (229)
T ss_dssp             CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTT---CHHHHHHTTCCBS--SEEEEESSS-CC
T ss_pred             cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcc---cHHHHHHcCCCcC--cEEEEECCC-cc
Confidence            345666666     788 99999999999999988  6789999999998   6799999999999  999999753 34


Q ss_pred             eeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcE-EEEEeCCCCccchhhhHH
Q 021368          121 KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPT  199 (313)
Q Consensus       121 ~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~-lv~fy~~~C~~C~~~~~~  199 (313)
                      ...|.|.++.+++..|+...+...               +.+..++.++|++.+ ..++++ +++||++||++|+.+.+.
T Consensus        94 ~~~~~G~~~~~~l~~~~~~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~~~  157 (229)
T 2ywm_A           94 GIRYIGLPAGLEFTTLINGIFHVS---------------QRKPQLSEKTLELLQ-VVDIPIEIWVFVTTSCGYCPSAAVM  157 (229)
T ss_dssp             CEEEESCCCTTHHHHHHHHHHHHH---------------TTCCSCCHHHHHHHT-TCCSCEEEEEEECTTCTTHHHHHHH
T ss_pred             cceecCCccHHHHHHHHHHHHhcc---------------CCccCCCHHHHHHHH-hcCCCeEEEEEECCCCcchHHHHHH
Confidence            667899999999999998876411               123457778888876 344555 889999999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          200 YNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       200 ~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +.+++..+.   ++.++.+|++.+..  .+|++.++|++++  +|. +   .+|.|..+.+.|.+||++.+.
T Consensus       158 ~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~---~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          158 AWDFALAND---YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-V---AEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHHHHHCT---TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-T---EEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCC---CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-E---EEeeCCCCHHHHHHHHHHHhh
Confidence            999999972   69999999998765  7899999999998  555 3   269999999999999998763

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.93  E-value=6.6e-25  Score=186.79  Aligned_cols=197  Identities=12%  Similarity=0.090  Sum_probs=154.8

Q ss_pred             CccEEEEEeeC---CchhhhhHHHHHHHHh---ccCe--EEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCce
Q 021368           50 IKNQLLLFAVS---NDSEKLLPVFEEAAKS---FKGK--LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK  121 (313)
Q Consensus        50 ~~~~v~f~~~~---~~c~~~~~~~~~~a~~---~~~~--v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~  121 (313)
                      .++.|.||++|   ++|+.+.+.++++|..   ++++  |.|+.+|+++   ++.+|++|||+++  |+++++ ++   .
T Consensus        26 ~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~---~~~~~~~~gv~~~--Pt~~i~-~g---~   96 (243)
T 2hls_A           26 NPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRES---DSDKFSEFKVERV--PTVAFL-GG---E   96 (243)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTT---THHHHHHTTCCSS--SEEEET-TT---T
T ss_pred             CCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCc---CHHHHHhcCCCcC--CEEEEE-CC---c
Confidence            46778899998   7899999999999998   5555  9999999998   6799999999988  999998 33   4


Q ss_pred             eccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHH
Q 021368          122 HILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYN  201 (313)
Q Consensus       122 ~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~  201 (313)
                      ..|.|..+.+.+..|+..++.....+.               .++.+.+..+....++.+++.||++||++|+.+.|.|.
T Consensus        97 ~~~~G~~~~~~l~~fv~~~l~~~~~~~---------------~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~  161 (243)
T 2hls_A           97 VRWTGIPAGEEIRALVEVIMRLSEDES---------------GLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAH  161 (243)
T ss_dssp             EEEESCCCTTHHHHHHHHHHHHHTTCC---------------CCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHH
T ss_pred             eeEcCCCcHHHHHHHHHHHHhccCCCC---------------CCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHH
Confidence            567788888999999988764211110               13333444432223567799999999999999999999


Q ss_pred             HHHHHhc--CCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCccccCC
Q 021368          202 KLAKHLR--GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKP  277 (313)
Q Consensus       202 ~la~~~~--~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~~~  277 (313)
                      +++..+.  +..++.++.+|++.+..  ..|+|.++|++++  +|..     .|.|..+.+.|.+||.+.++........
T Consensus       162 ~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~-----~~~G~~~~~~l~~~l~~~~~~~~~~~g~  234 (243)
T 2hls_A          162 MFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYL-----VFVGVPYEEDFLDYVKSAAEGRLTVKGP  234 (243)
T ss_dssp             HHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE-----EEESCCCHHHHHHHHHHHHTTCCCCCC-
T ss_pred             HHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEE-----EEeCCCCHHHHHHHHHHHhhcccccCCC
Confidence            9999983  22369999999998765  6899999999988  5542     5999999999999999998765554433

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.91  E-value=1.2e-23  Score=189.72  Aligned_cols=210  Identities=17%  Similarity=0.198  Sum_probs=172.1

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-Cchhhhh------HHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLL------PVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFG  102 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~------~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~  102 (313)
                      .+.|..||.++|++++.....++|.||++| ++|....      |.|+++|..+++ .+.|+.|||+.   ++.+|++||
T Consensus        12 ~~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~---~~~l~~~~~   88 (367)
T 3us3_A           12 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK---DAAVAKKLG   88 (367)
T ss_dssp             CCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---THHHHHHHT
T ss_pred             CCccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc---cHHHHHHcC
Confidence            346899999999999888888999999999 8873332      689999999987 49999999998   679999999


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcChHHHhhcCCCcE
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDV  181 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~l~~~~k~~  181 (313)
                      |+++  ||+.+|++|.  ...|.|.++.+.|.+|+.+.++                 ..+..++ .+++.+++....+.+
T Consensus        89 V~~~--PTl~~f~~G~--~~~y~G~~~~~~i~~~i~~~~~-----------------~~v~~i~~~~~~~~~~~~~~~~~  147 (367)
T 3us3_A           89 LTEE--DSIYVFKEDE--VIEYDGEFSADTLVEFLLDVLE-----------------DPVELIEGERELQAFENIEDEIK  147 (367)
T ss_dssp             CCST--TEEEEEETTE--EEECCSCCSHHHHHHHHHHHHS-----------------CSEEECCSHHHHHHHHHCCSSCE
T ss_pred             CCcC--ceEEEEECCc--EEEeCCCCCHHHHHHHHHHhcC-----------------CCcEEcCCHHHHHHHhccCCCcE
Confidence            9999  9999998764  5689999999999999999876                 4467775 477888774356889


Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC-cCHHHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVAL  260 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l  260 (313)
                      +|.|+++||.   ...+.|.++|..+++  .+.|+.+.. .....+++++. |++++|+.+..  .++.|.|. .+.+.|
T Consensus       148 vv~ff~~~~~---~~~~~f~~~A~~~~~--~~~F~~~~~-~~~~~~~~v~~-p~i~lf~~~~~--~~~~y~g~~~~~~~l  218 (367)
T 3us3_A          148 LIGYFKNKDS---EHYKAFKEAAEEFHP--YIPFFATFD-SKVAKKLTLKL-NEIDFYEAFME--EPVTIPDKPNSEEEI  218 (367)
T ss_dssp             EEEECSCTTC---HHHHHHHHHHHHHTT--TSCEEEECC-HHHHHHHTCCT-TCEEEECTTCS--SCEECSSSSCCHHHH
T ss_pred             EEEEECCCCc---hHHHHHHHHHHhhcC--CcEEEEECC-HHHHHHcCCCC-CeEEEEcCCCC--CCeecCCCCCCHHHH
Confidence            9999999865   667889999999987  578887653 22336788875 99999988654  56789994 899999


Q ss_pred             HHHHHhcCCCCcc
Q 021368          261 YKFLKKNASIPFK  273 (313)
Q Consensus       261 ~~fi~~~~~~~~~  273 (313)
                      .+||+.+.-+.+.
T Consensus       219 ~~fi~~~~~p~v~  231 (367)
T 3us3_A          219 VNFVEEHRRSTLR  231 (367)
T ss_dssp             HHHHHHTCSCSEE
T ss_pred             HHHHHHcCcccee
Confidence            9999999755443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.91  E-value=1.5e-23  Score=188.12  Aligned_cols=209  Identities=17%  Similarity=0.182  Sum_probs=172.1

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHH-------HHHHHHhccC-eEEEEEEeCCCcccccchhhhhC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPV-------FEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFG  102 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~-------~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~  102 (313)
                      +.|..|+.++|+..+.....++|.||++| + |+.+.|.       |+++|..+++ .+.|+.|||+.   ++.+|++||
T Consensus        11 ~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~---~~~l~~~~~   86 (350)
T 1sji_A           11 DRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK---EAKLAKKLG   86 (350)
T ss_dssp             CCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT---THHHHHHHT
T ss_pred             CccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC---CHHHHHhcC
Confidence            45889999999999888888999999999 8 9999888       9999999987 49999999999   669999999


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcChHHHhhcCCCcE
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDV  181 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~l~~~~k~~  181 (313)
                      |+++  |++++|++|.  ...|.|.++.+.|.+|+.+.++                 ..+..++ .+++++++....+.+
T Consensus        87 v~~~--Pt~~~~~~g~--~~~~~G~~~~~~l~~~i~~~~~-----------------~~~~~l~~~~~~~~~~~~~~~~~  145 (350)
T 1sji_A           87 FDEE--GSLYVLKGDR--TIEFDGEFAADVLVEFLLDLIE-----------------DPVEIINSKLEVQAFERIEDQIK  145 (350)
T ss_dssp             CCST--TEEEEEETTE--EEEECSCCCHHHHHHHHHTTSS-----------------CSEEECCSHHHHHHHHHCCSSCE
T ss_pred             CCcc--ceEEEEECCc--EEEecCCCCHHHHHHHHHHhcC-----------------CcceeccchHHHHHHhccCCCcE
Confidence            9999  9999998775  5688999999999999998765                 3466774 467888764145678


Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC-cCHHHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVAL  260 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l  260 (313)
                      +|.|+++||.   ...+.|.++|..++.  .+.|+.+.. .....++++. +|++++|+.+..  .++.|.|. .+.+.|
T Consensus       146 vv~ff~~~~~---~~~~~~~~~A~~~~~--~~~f~~~~~-~~~~~~~~v~-~p~i~~~~~~~~--~~~~y~g~~~~~~~l  216 (350)
T 1sji_A          146 LIGFFKSEES---EYYKAFEEAAEHFQP--YIKFFATFD-KGVAKKLSLK-MNEVDFYEPFMD--EPIAIPDKPYTEEEL  216 (350)
T ss_dssp             EEEECSCTTS---HHHHHHHHHHHHTTT--TSEEEEECC-HHHHHHHTCC-TTCEEEECTTCS--SCEECSSSSCCHHHH
T ss_pred             EEEEECCCCc---HHHHHHHHHHHhhcc--CcEEEEECC-HHHHHHcCCC-CCcEEEEeCCCC--CceecCCCCCCHHHH
Confidence            9999999864   556889999999976  688887742 2223678888 999999987654  45689996 899999


Q ss_pred             HHHHHhcCCCCccc
Q 021368          261 YKFLKKNASIPFKI  274 (313)
Q Consensus       261 ~~fi~~~~~~~~~~  274 (313)
                      .+||+.+.-+.+.-
T Consensus       217 ~~fi~~~~~p~v~e  230 (350)
T 1sji_A          217 VEFVKEHQRPTLRR  230 (350)
T ss_dssp             HHHHHHHCCCSEEE
T ss_pred             HHHHHHcCccchhh
Confidence            99999987544433

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.90  E-value=9.6e-23  Score=184.95  Aligned_cols=207  Identities=14%  Similarity=0.206  Sum_probs=150.9

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhc------cCeEEEEEEeCCCcccccchhhhhCCC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF------KGKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~------~~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      ..|..|+.++|+.++..+..++|.||++| ++|+++.|.|.++|..+      .+.+.|+.|||+.   +..+|++|||+
T Consensus         5 ~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~---~~~l~~~~~v~   81 (382)
T 2r2j_A            5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ---HSDIAQRYRIS   81 (382)
T ss_dssp             ---CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT---CHHHHHHTTCC
T ss_pred             CceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc---cHHHHHhcCCC
Confidence            35788999999998887888999999999 99999999999999998      4569999999998   66999999999


Q ss_pred             CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcChHHHhhcCCCcEEE
Q 021368          105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDVLL  183 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~l~~~~k~~lv  183 (313)
                      ++  |++++|.+|......|.|.++.+.|.+|+.+.+..                 .+..++ .+++.. + ...+.++|
T Consensus        82 ~~--Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~-----------------~v~~l~~~~~l~~-l-~~~~~~~v  140 (382)
T 2r2j_A           82 KY--PTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSD-----------------PIQEIRDLAEITT-L-DRSKRNII  140 (382)
T ss_dssp             EE--SEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSC-----------------CCEEC--------------CCEEE
T ss_pred             cC--CEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccC-----------------CceecCCHHHHHH-h-cCCCCEEE
Confidence            99  99999987753333689999999999999999862                 344453 345666 4 45678899


Q ss_pred             EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCc-CHHHHHH
Q 021368          184 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDR-TVVALYK  262 (313)
Q Consensus       184 ~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~-~~~~l~~  262 (313)
                      .|++++|.+   ....|.++|..+++  .+.|+....  .....+++.+.| +++++.+... .+..|.|.+ +.+.|..
T Consensus       141 ~ff~~~~~~---~~~~f~~~A~~~~~--~~~F~~~~~--~~~~~~~v~~~p-i~~~~~~~~~-~~~~y~g~~~~~~~l~~  211 (382)
T 2r2j_A          141 GYFEQKDSD---NYRVFERVANILHD--DCAFLSAFG--DVSKPERYSGDN-IIYKPPGHSA-PDMVYLGAMTNFDVTYN  211 (382)
T ss_dssp             EEESCSSSH---HHHHHHHHHHHHTT--TCEEEEEES--CC--------CE-EEEECSSSSS-CCEECCSCTTCHHHHHH
T ss_pred             EEECCCCCh---hHHHHHHHHHHhhc--cceEEEEeh--hhHHhhCCCCCc-eEECCCCCCC-cCcccCCCCCCHHHHHH
Confidence            999987654   46789999999987  567776665  234678888999 5555543322 456899988 8999999


Q ss_pred             HHHhcCCCC
Q 021368          263 FLKKNASIP  271 (313)
Q Consensus       263 fi~~~~~~~  271 (313)
                      ||+.+..+.
T Consensus       212 fi~~~~~p~  220 (382)
T 2r2j_A          212 WIQDKCVPL  220 (382)
T ss_dssp             HHHHHHSCS
T ss_pred             HHHhcccCc
Confidence            999986433

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.2e-22  Score=172.92  Aligned_cols=210  Identities=16%  Similarity=0.200  Sum_probs=168.5

Q ss_pred             CCCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+.|.+|+.++|++.+ ..+..++|.||++| ++|+.+.|.|.+++..+.+.+.|+.|||+... +..+|++|||.++ 
T Consensus        15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~-~~~l~~~~~I~~~-   92 (298)
T 3ed3_A           15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK-NKALCAKYDVNGF-   92 (298)
T ss_dssp             SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT-THHHHHHTTCCBS-
T ss_pred             CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCcc-CHHHHHhCCCCcc-
Confidence            45689999999999988 45667889999999 99999999999999999998999999998544 6799999999999 


Q ss_pred             CcEEEEEcCCCC----------------ceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEc-CcCh
Q 021368          108 PKVLAYTGNDDA----------------KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNF  170 (313)
Q Consensus       108 ~P~i~~~~~~~~----------------~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f  170 (313)
                       |++++|..|..                ....|.|.++.+.|.+|+.+.+.                 ..+..++ .+++
T Consensus        93 -Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~-----------------~~v~~i~~~~~l  154 (298)
T 3ed3_A           93 -PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR-----------------SYVKKFVRIDTL  154 (298)
T ss_dssp             -SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC-----------------CCEEECSCGGGH
T ss_pred             -ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc-----------------cccEEcCCHHHH
Confidence             99999987751                35678999999999999999865                 4466674 4678


Q ss_pred             HHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCC-----C-----------
Q 021368          171 DEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAK-----S-----------  230 (313)
Q Consensus       171 ~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~-----v-----------  230 (313)
                      ++++....++.+++|..     .....+.|..+|..+++  .+.|+.++......    .+++     |           
T Consensus       155 ~~~l~~~~~~~vi~fs~-----~~~~~~~f~~~A~~~~~--~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~  227 (298)
T 3ed3_A          155 GSLLRKSPKLSVVLFSK-----QDKISPVYKSIALDWLG--KFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQ  227 (298)
T ss_dssp             HHHHTSCSSEEEEEEES-----SSSCCHHHHHHHHHTBT--TEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCceEEEEEcC-----CCcchHHHHHHHHHhhc--CcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccc
Confidence            88876555677777632     23456899999999988  79999988543221    1222     2           


Q ss_pred             --CcCceEEEEeCCCCCcCceeecc-CcCHHHHHHHHHhcC
Q 021368          231 --DGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNA  268 (313)
Q Consensus       231 --~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~~  268 (313)
                        ...|++++|+....  +++.|.| ..+.+.|.+||.++.
T Consensus       228 ~~~~~P~lv~~~~~~~--~~~~y~g~~~~~~~i~~fi~~~~  266 (298)
T 3ed3_A          228 RQSDKSKLVVFDADKD--KFWEYEGNSINKNDISKFLRDTF  266 (298)
T ss_dssp             TTCSSCEEEEEETTTT--EEEECCCSSCCHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEcCCCC--ceEEeccccCCHHHHHHHHHhhc
Confidence              67999999987655  5779996 689999999999543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.86  E-value=5.8e-21  Score=178.41  Aligned_cols=214  Identities=16%  Similarity=0.183  Sum_probs=171.2

Q ss_pred             ceEEeCCCcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           33 LVTIFTRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .|..||.++|+..+...   ..++|.||++| ++|+.+.|.|.++|..+++.+.|+.|||+.   ++.+|++|||+++  
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--   76 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTA---NTNTCNKYGVSGY--   76 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTT---CHHHHHHTTCCEE--
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCC---CHHHHHhcCCCCC--
Confidence            47899999999988776   78899999999 999999999999999999999999999999   6699999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEE-cCcChHHHhhcCCCcEEEEEeC
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIV-VGNNFDEIVLDESKDVLLEIYA  187 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l-~~~~f~~~l~~~~k~~lv~fy~  187 (313)
                      |++++|++|. ....|.|.++.+.|.+|+.+.++                 ..+..+ +.+++.+++ .....++|.|+.
T Consensus        77 Ptl~~~~~g~-~~~~~~G~~~~~~l~~~~~~~~~-----------------~~~~~i~~~~~~~~~~-~~~~~~vv~~~~  137 (481)
T 3f8u_A           77 PTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAG-----------------PASVPLRTEEEFKKFI-SDKDASIVGFFD  137 (481)
T ss_dssp             SEEEEEETTE-EEEECCSCSSHHHHHHHHHHHTS-----------------CSEEEECSHHHHHHHT-TSSSCEEEEEES
T ss_pred             CEEEEEeCCc-eeeeecCccCHHHHHHHHHhhcc-----------------cCceecCCHHHHHHHH-hcCCcEEEEEEC
Confidence            9999998764 45678999999999999999876                 346666 446677765 456788888998


Q ss_pred             CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCC----CCCcCceeec-cCcCHHHHHH
Q 021368          188 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAG----NKSFDPINVD-VDRTVVALYK  262 (313)
Q Consensus       188 ~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g----~~~~~~~~y~-g~~~~~~l~~  262 (313)
                      ++|.   .....|.++|..+++  .+.|+.+. +.....+++++..| +++|+.+    .....+..|. |..+.+.|.+
T Consensus       138 ~~~~---~~~~~f~~~a~~~~~--~~~F~~~~-~~~~~~~~~v~~~~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~  210 (481)
T 3f8u_A          138 DSFS---EAHSEFLKAASNLRD--NYRFAHTN-VESLVNEYDDNGEG-IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKK  210 (481)
T ss_dssp             CTTC---HHHHHHHHHHHHHTT--TSCEEEEC-CHHHHHHHCSSSEE-EEEECCGGGCBTTBCSEEECCCSSCCHHHHHH
T ss_pred             CCcc---chHHHHHHHHHHhcc--CceEEEEC-CHHHHHHhCCCCCc-EEEEecccccCccCCcccccCCCCCCHHHHHH
Confidence            8765   456789999999977  57777654 22333678887765 7888722    1111456898 7889999999


Q ss_pred             HHHhcCCCCccccCC
Q 021368          263 FLKKNASIPFKIQKP  277 (313)
Q Consensus       263 fi~~~~~~~~~~~~~  277 (313)
                      ||..+.-+.+.-..+
T Consensus       211 fi~~~~~p~v~e~t~  225 (481)
T 3f8u_A          211 FIQENIFGICPHMTE  225 (481)
T ss_dssp             HHHHHTTTTSCEECT
T ss_pred             HHHHhCCCCccccCh
Confidence            999997655444433

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.83  E-value=3.2e-20  Score=141.82  Aligned_cols=108  Identities=27%  Similarity=0.482  Sum_probs=97.0

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC---CCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~---~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      .+.|..|+.++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+..   ...+.++.+|++.+..  .+++|.++
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~   93 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGF   93 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccC
Confidence            467999999999999977789999999999999999999999999998752   2469999999998865  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      |++++|++|... .+..|.|..+.+.|.+||.++
T Consensus        94 Pt~~~~~~g~~~-~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           94 PTMRYYTRIDKQ-EPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SEEEEECSSCSS-SCEECCSCCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCC-CceEecCCccHHHHHHHHHhc
Confidence            999999998876 567899999999999999886

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.83  E-value=1.6e-19  Score=162.51  Aligned_cols=214  Identities=14%  Similarity=0.114  Sum_probs=166.8

Q ss_pred             HHHhcCCCceEEeCC-CcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCC
Q 021368           25 FVFSNKLPLVTIFTR-ENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        25 fi~~~~~~~v~~lt~-~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      |+.....+.+..+++ +++++++......+|.||.+.  +......|.++|..+. .+.|+.++      +..+|+.+|+
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vvgff~~~--~~~~~~~f~~~A~~~~-~~~F~~t~------~~~v~~~~~v   80 (361)
T 3uem_A           10 LFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFKDV--ESDSAKQFLQAAEAID-DIPFGITS------NSDVFSKYQL   80 (361)
T ss_dssp             GTSCCCCSSSEECCSHHHHHHHHHTSSEEEEEECSCT--TSHHHHHHHHHHHHCS-SSCEEEEC------CHHHHHHTTC
T ss_pred             EecCCccccceecCCHHHHHHHHhcCCcEEEEEEcCC--CchHHHHHHHHHhcCC-CceEEEEC------cHHHHHHhCC
Confidence            344445566777755 667777776655666677653  3344679999999995 48887654      3489999999


Q ss_pred             CCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEE
Q 021368          104 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLL  183 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv  183 (313)
                      ..   |.+++|+.-...+..|.|..+.++|.+|+.....                 +.|..++.+++.+.+....++++|
T Consensus        81 ~~---~~i~lfk~f~~~~~~~~g~~~~~~i~~fi~~~~~-----------------p~v~~~~~~~~~~~~~~~~~~~~v  140 (361)
T 3uem_A           81 DK---DGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQL-----------------PLVIEFTEQTAPKIFGGEIKTHIL  140 (361)
T ss_dssp             SS---SEEEEEESSTTSEEECCSCCCHHHHHHHHHHHSS-----------------CSEEECSTTTHHHHHSCSCCEEEE
T ss_pred             CC---CeEEEEEecCCCccccCCcCCHHHHHHHHHHcCC-----------------CcceecCcccHHHHhcCCCCcEEE
Confidence            63   6777777644456788999999999999999754                 568899999999988666678899


Q ss_pred             EEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCCc--CceEEEEeCCCCCcCceeec---cC
Q 021368          184 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDG--FPTILFFPAGNKSFDPINVD---VD  254 (313)
Q Consensus       184 ~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~v~~--~P~i~~~~~g~~~~~~~~y~---g~  254 (313)
                      +||++||++|+.+.+.|.++|..+++  .+.|+.+|++.  +..  +.|++.+  +|++++|..+....   .|.   |.
T Consensus       141 ~F~~~~~~~~~~~~~~~~~~A~~~~~--~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~---ky~~~~~~  215 (361)
T 3uem_A          141 LFLPKSVSDYDGKLSNFKTAAESFKG--KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMT---KYKPESEE  215 (361)
T ss_dssp             EECCSSSSSHHHHHHHHHHHHGGGTT--TCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--CC---EECCSSCC
T ss_pred             EEEeCCchhHHHHHHHHHHHHHHccC--ceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCccc---ccCCCccc
Confidence            99999999999999999999999987  69999999983  333  7899987  99999998865432   565   78


Q ss_pred             cCHHHHHHHHHhcCCCCc
Q 021368          255 RTVVALYKFLKKNASIPF  272 (313)
Q Consensus       255 ~~~~~l~~fi~~~~~~~~  272 (313)
                      .+.+.|.+|+.+.+....
T Consensus       216 ~~~~~l~~fi~~~l~g~~  233 (361)
T 3uem_A          216 LTAERITEFCHRFLEGKI  233 (361)
T ss_dssp             CCHHHHHHHHHHHHTTCS
T ss_pred             cCHHHHHHHHHHHhcCCC
Confidence            999999999999876443

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.82  E-value=4.6e-20  Score=142.23  Aligned_cols=127  Identities=21%  Similarity=0.333  Sum_probs=112.2

Q ss_pred             cCCCceEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           29 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        29 ~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      ++.|++.++|.++|++++....+.+|.||++|++|+.+.|.++++|.+|.|++.|++||.++   ++.+++.|||++...
T Consensus         3 c~~plv~~~t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~---~~~~a~~~gi~~~~i   79 (133)
T 2djk_A            3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA---FGAHAGNLNLKTDKF   79 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT---TGGGTTTTTCCSSSS
T ss_pred             cccCceeccChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHH---hHHHHHHcCCCcccC
Confidence            56889999999999998887778888899888999999999999999999999999999987   678999999998223


Q ss_pred             cEEEEEcCCCCceeccC--CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 021368          109 KVLAYTGNDDAKKHILD--GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN  158 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~--g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~  158 (313)
                      |+++++..+.+..+.+.  |..+.+.|.+|+.+++.|+++++++|+++|+.+
T Consensus        80 Ptl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl~p~~kSe~iP~~~  131 (133)
T 2djk_A           80 PAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQ  131 (133)
T ss_dssp             SEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTS
T ss_pred             CEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCcCccccCCCCCCcC
Confidence            99999986333446665  999999999999999999999999999999864

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.82  E-value=3.9e-19  Score=166.96  Aligned_cols=201  Identities=15%  Similarity=0.150  Sum_probs=160.7

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .+.|..||.++|+..+..+..++|.||++| ++|+.+.|.|.++|..+++. +.|+.|||+.   ++.+|++|||+++  
T Consensus        13 ~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--   87 (504)
T 2b5e_A           13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE---NQDLCMEHNIPGF--   87 (504)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             CCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC---CHHHHHhcCCCcC--
Confidence            356899999999999988888999999999 99999999999999999985 9999999999   6699999999999  


Q ss_pred             cEEEEEcCCCCc-eeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCC-CcEEEEEe
Q 021368          109 KVLAYTGNDDAK-KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES-KDVLLEIY  186 (313)
Q Consensus       109 P~i~~~~~~~~~-~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~-k~~lv~fy  186 (313)
                      |++++|++|... ...|.|.++.+.|.+|+.+.++                 ..+..++.  +++++.... ...+|.|+
T Consensus        88 Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~-----------------~~v~~i~~--~~~~~~~~~~~~~~v~~f  148 (504)
T 2b5e_A           88 PSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ-----------------PAVAVVAD--LPAYLANETFVTPVIVQS  148 (504)
T ss_dssp             SEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTS-----------------CSEEECSC--HHHHHHHSCCSSCEEEEE
T ss_pred             CEEEEEeCCccccceeecCCCCHHHHHHHHHHhcC-----------------CcceeHHH--HHHHHhcCCCceEEEEEe
Confidence            999999887532 6788999999999999999876                 44667766  888775544 14455555


Q ss_pred             CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccC-c---CHHHHHH
Q 021368          187 APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-R---TVVALYK  262 (313)
Q Consensus       187 ~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~-~---~~~~l~~  262 (313)
                      .+..   ......|..+|..++.  .+.|+.++   ...+.+++.    +++|+...   .++.|.|. .   +.+.|.+
T Consensus       149 ~~~~---~~~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~----i~l~~~~~---~~~~~~g~~~~~~~~~~l~~  213 (504)
T 2b5e_A          149 GKID---ADFNATFYSMANKHFN--DYDFVSAE---NADDDFKLS----IYLPSAMD---EPVVYNGKKADIADADVFEK  213 (504)
T ss_dssp             ESCC---HHHHHHHHHHHHHTTT--TCEEEEEE---CTTSCCEEE----EEETTEEE---EEEECCSCHHHHTSHHHHHH
T ss_pred             CCCC---chHHHHHHHHHHHhhc--CcEEEEEH---HHHHhcCCe----EEecCCCC---cccccCCcccccCCHHHHHH
Confidence            5443   4567789999999987  67888777   223555554    66665422   34578897 6   8999999


Q ss_pred             HHHhcCCC
Q 021368          263 FLKKNASI  270 (313)
Q Consensus       263 fi~~~~~~  270 (313)
                      ||..+.-+
T Consensus       214 fi~~~~~p  221 (504)
T 2b5e_A          214 WLQVEALP  221 (504)
T ss_dssp             HHHHHSSC
T ss_pred             HHHhcccC
Confidence            99987644

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.82  E-value=8.3e-19  Score=157.19  Aligned_cols=236  Identities=14%  Similarity=0.113  Sum_probs=187.1

Q ss_pred             CCcccccCCCCCCHHHHHHHHHhcCCCceEEeC-CCccccccc-CCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEE
Q 021368            6 TEKISYFADGKFDKSTIADFVFSNKLPLVTIFT-RENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIF   83 (313)
Q Consensus         6 ~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt-~~~~~~~~~-~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f   83 (313)
                      ++....| .|..+..+|..|+.....+.+.+++ .++++.+.. ....++|.||.++  |....+.|.++|..+.+.+.|
T Consensus        98 ~g~~~~~-~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~--~~~~~~~~~~~A~~~~~~~~f  174 (350)
T 1sji_A           98 GDRTIEF-DGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSE--ESEYYKAFEEAAEHFQPYIKF  174 (350)
T ss_dssp             TTEEEEE-CSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCT--TSHHHHHHHHHHHHTTTTSEE
T ss_pred             CCcEEEe-cCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCC--CcHHHHHHHHHHHhhccCcEE
Confidence            4457789 9999999999999999999999996 467777765 5556777788774  677789999999999888999


Q ss_pred             EEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCe
Q 021368           84 VYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDV  162 (313)
Q Consensus        84 ~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v  162 (313)
                      +.++.      ..+|+++||. +  |++++++.....+..|.|. ++.++|.+|+.+...                 +.|
T Consensus       175 ~~~~~------~~~~~~~~v~-~--p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~-----------------p~v  228 (350)
T 1sji_A          175 FATFD------KGVAKKLSLK-M--NEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQR-----------------PTL  228 (350)
T ss_dssp             EEECC------HHHHHHHTCC-T--TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCC-----------------CSE
T ss_pred             EEECC------HHHHHHcCCC-C--CcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCc-----------------cch
Confidence            98853      4799999998 6  9998998755556778887 999999999998643                 468


Q ss_pred             EEEcCcChHHHhhcCC-CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-cCc
Q 021368          163 KIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFP  234 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~~-k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~-~~P  234 (313)
                      ..++.+++.++..... +..++.|+.++|+.|..+.+.+.++|.++++...+.|+.+|+.....      ..+++. ++|
T Consensus       229 ~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~~~~P  308 (350)
T 1sji_A          229 RRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKP  308 (350)
T ss_dssp             EECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCSCTTSC
T ss_pred             hhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCCCccCC
Confidence            8999999998764322 44566699999999999999999999999854468899999987654      347776 589


Q ss_pred             eEEEEeCCCCCcCcee-e---ccCcCHHHHHHHHHhcCCCC
Q 021368          235 TILFFPAGNKSFDPIN-V---DVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~-y---~g~~~~~~l~~fi~~~~~~~  271 (313)
                      +++++...+.. +... +   .|..+.+.|.+|+++.+.-+
T Consensus       309 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~F~~d~~~Gk  348 (350)
T 1sji_A          309 QIGVVNVTDAD-SVWMEIPDDDDLPTAEELEDWIEDVLSGK  348 (350)
T ss_dssp             EEEEEESSSSC-EEESCSSCCSCCCCHHHHHHHHHHHHTSC
T ss_pred             cEEEEeccccc-ccccCCCcccccCCHHHHHHHHHHHhcCc
Confidence            99999763331 1111 2   35789999999999987544

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.81  E-value=1.4e-18  Score=147.79  Aligned_cols=219  Identities=13%  Similarity=0.127  Sum_probs=158.4

Q ss_pred             CCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      .+.|..|+.++|+..+ ..+..++|.||++| ++|+++.|.|.+++.++.+   .+.|+.|||+... ++.+|++|||.+
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~~l~~~~~v~~   89 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET-NSAVCRDFNIPG   89 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT-THHHHHHTTCCS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh-hHHHHHHcCCCc
Confidence            4578999999999865 44478888999999 9999999999999999997   7999999996544 789999999999


Q ss_pred             CCCcEEEEEcCCCC----ceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcC-CCc
Q 021368          106 EAPKVLAYTGNDDA----KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDE-SKD  180 (313)
Q Consensus       106 ~~~P~i~~~~~~~~----~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~-~k~  180 (313)
                      +  |++++++.+..    ..+.+.| .+.+.|.+++.+.+.....      ..|.. ...+..++..++..++... .++
T Consensus        90 ~--Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~------~~p~~-~p~l~~~~~~~l~~~~~~~~~~~  159 (244)
T 3q6o_A           90 F--PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHD------TWPPA-CPPLEPAXLEEIDGFFARNNEEY  159 (244)
T ss_dssp             S--SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTT------SCCTT-SCCCSCCCHHHHHTHHHHCCCSE
T ss_pred             c--CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccc------cCCCC-CCCcccccHHHHHHHhhcCCCce
Confidence            9  99999987442    2334556 7999999999999874332      11111 1223345566777766443 456


Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEeCCCCCcCceeecc-CcCHH
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVV  258 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~  258 (313)
                      ..+.|....|.       ...+++..+.....+.+..++-..... .+|+|+++|++++|..+...   ..++. ..+.+
T Consensus       160 ~al~f~~~~~~-------~~~~~~~d~~~~~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~g~~---~~~~~~~~~r~  229 (244)
T 3q6o_A          160 LALIFEXGGSY-------LAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSV---SRVPVLMESRS  229 (244)
T ss_dssp             EEEEEECTTCC-------HHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCE---EECCCSSSSHH
T ss_pred             EEEEEEECCcc-------hHHHHHHHhccCCceEEEEEeCchHHHHHHcCCCCCCeEEEEeCCCCe---EeeccccccHH
Confidence            66777766533       445566666655578888877543333 89999999999998765543   25654 55778


Q ss_pred             HHHHHHHhcCCC
Q 021368          259 ALYKFLKKNASI  270 (313)
Q Consensus       259 ~l~~fi~~~~~~  270 (313)
                      .+..+|++..+.
T Consensus       230 ~~~~~l~~~~~~  241 (244)
T 3q6o_A          230 FYTAYLQRLSGL  241 (244)
T ss_dssp             HHHHHHHTC---
T ss_pred             HHHHHHHhCCCC
Confidence            888888877654

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=2.5e-19  Score=137.78  Aligned_cols=113  Identities=49%  Similarity=0.935  Sum_probs=98.8

Q ss_pred             CCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       158 ~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      +.+.|..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+.....+.++.+|++.+..  .+|++.++|+
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   84 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT   84 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSE
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCE
Confidence            35679999999999988766899999999999999999999999999999864479999999998876  6799999999


Q ss_pred             EEEEeCCCCCcCceeec-cCcCHHHHHHHHHhcCCCC
Q 021368          236 ILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~-g~~~~~~l~~fi~~~~~~~  271 (313)
                      +++|.+|..+ .++.|. |..+.+.|.+||.+++...
T Consensus        85 ~~~~~~g~~~-~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           85 IYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             EEEECTTCTT-SCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EEEEeCCCcc-cceEecCCCcCHHHHHHHHHHhcccc
Confidence            9999988766 455788 4589999999999998654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.80  E-value=6.2e-19  Score=133.25  Aligned_cols=115  Identities=46%  Similarity=0.867  Sum_probs=98.5

Q ss_pred             CCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC---CCcEEEEEEeCCCcccccCCCC
Q 021368          155 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNEHHRAKSD  231 (313)
Q Consensus       155 ~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~---~~~v~~~~vd~~~~~~~~~~v~  231 (313)
                      |+...+.|..+++++|.+.+...+++++|+||++||++|+.+.+.|.+++..+.+   ...+.++.+|++.+.... ++.
T Consensus         2 p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~-~v~   80 (121)
T 2djj_A            2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-EIQ   80 (121)
T ss_dssp             CCCCSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS-CCS
T ss_pred             CccCCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc-ccC
Confidence            3345578999999999998767789999999999999999999999999999976   236999999999887655 999


Q ss_pred             cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          232 GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       232 ~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      ++|++++|++|..+ ....|.|..+.+.|.+||.+++...
T Consensus        81 ~~Pt~~~~~~~~~~-~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           81 GFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             SSSEEEEECSSCTT-SCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             cCCeEEEEeCcCCC-CceEecCCCCHHHHHHHHHhccCcC
Confidence            99999999888652 2348999999999999999997644

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.79  E-value=6.5e-18  Score=157.95  Aligned_cols=222  Identities=13%  Similarity=0.125  Sum_probs=161.7

Q ss_pred             CCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ...|..++.++|+..+ ..+..++|.||++| ++|+.+.|.|++++.++.+   .+.|+.|||+.+. ++.+|++|||.+
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~-~~~l~~~~~V~~   89 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET-NSAVCREFNIAG   89 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG-GHHHHHHTTCCS
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc-cHHHHHHcCCcc
Confidence            3468899999999865 45567888999999 9999999999999999997   7999999997644 779999999999


Q ss_pred             CCCcEEEEEcCCCC---ceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcC-CCcE
Q 021368          106 EAPKVLAYTGNDDA---KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDE-SKDV  181 (313)
Q Consensus       106 ~~~P~i~~~~~~~~---~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~-~k~~  181 (313)
                      +  |++++|+.+..   ....+.|.++.+.|.+++.+.+.....      ..|. ....+..++.+++..++... .+++
T Consensus        90 ~--PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~------~~P~-~~p~l~~it~~~l~~~l~~~~~~~v  160 (519)
T 3t58_A           90 F--PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRD------TWPP-ACPPLEPAKLNDIDGFFTRNKADYL  160 (519)
T ss_dssp             B--SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCS------CCCT-TCCCCSBCCHHHHTTGGGSCCCSEE
T ss_pred             c--CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccc------cCCC-CCCccCcCCHHHHHHHhccCCCCeE
Confidence            9  99999986431   234456779999999999999874331      1111 12234456667777766443 4567


Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCceEEEEeCCCCCcCceeecc-CcCHHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVA  259 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~  259 (313)
                      +|.|....       ......++..+.....+.+..++-..... .+|+|+.+|+++++..+.+..   .+.. ......
T Consensus       161 allF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kfgV~~~Pslvl~~~nGk~~---~~~v~~~~r~~  230 (519)
T 3t58_A          161 ALVFERED-------SYLGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVS---RVPVLVESRSF  230 (519)
T ss_dssp             EEEEECTT-------CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCEE---ECCCSSCSHHH
T ss_pred             EEEecCCc-------hHHHHHHHHHhhccCCeeEEEecCchHHHHHHcCCCCCCeEEEEeCCCcee---ecccccccHHH
Confidence            77777654       22567777777766678888776543333 899999999999997766532   3443 234566


Q ss_pred             HHHHHHhcCCCCc
Q 021368          260 LYKFLKKNASIPF  272 (313)
Q Consensus       260 l~~fi~~~~~~~~  272 (313)
                      +..++.+..+...
T Consensus       231 ~~~~l~~l~~~~~  243 (519)
T 3t58_A          231 YTSYLRGLPGLTR  243 (519)
T ss_dssp             HHHHHTTSTTCCC
T ss_pred             HHHHHHHccCCCC
Confidence            7778776555443

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.78  E-value=5.2e-19  Score=130.37  Aligned_cols=98  Identities=26%  Similarity=0.501  Sum_probs=84.7

Q ss_pred             EEEc-CcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          163 KIVV-GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       163 ~~l~-~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      ..++ .++|++.+.+. +++++|.|||+||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .+|+|.++||+++
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~V~~~PT~~~   79 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECEDIAQDNQIACMPTFLF   79 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC---CeEEEEEecccCHHHHHHcCCCeecEEEE
Confidence            3443 46888888643 6899999999999999999999999999875   48999999998876  7999999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      |++|..+.   ++.| .+.+.|.+||++|
T Consensus        80 ~~~G~~v~---~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           80 MKNGQKLD---SLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EETTEEEE---EEES-CCHHHHHHHHHHH
T ss_pred             EECCEEEE---EEeC-cCHHHHHHHHHhc
Confidence            99998875   7888 5889999999886

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.78  E-value=1.2e-18  Score=139.23  Aligned_cols=121  Identities=17%  Similarity=0.243  Sum_probs=100.9

Q ss_pred             CCeEEEcCcChHHHhhcC-CCcEEEEEeC-------CCCccchhhhHHHHHHHHHhcCC---CcEEEEEEeCCCccc--c
Q 021368          160 GDVKIVVGNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH--H  226 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~-~k~~lv~fy~-------~~C~~C~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~~~--~  226 (313)
                      +.|..|++++|++.+... +.+++|+|||       +||++|+.+.|+|+++|..+.+.   .++.|+++|++.+..  .
T Consensus        18 ~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~   97 (178)
T 3ga4_A           18 TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVK   97 (178)
T ss_dssp             TSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHH
T ss_pred             CCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHH
Confidence            568999999999987543 5679999999       49999999999999999998611   379999999999876  7


Q ss_pred             cCCCCcCceEEEEeCCCCCc---------Cceee---cc-CcCHHHHHHHHHhcCCCCccccCCCCC
Q 021368          227 RAKSDGFPTILFFPAGNKSF---------DPINV---DV-DRTVVALYKFLKKNASIPFKIQKPTSA  280 (313)
Q Consensus       227 ~~~v~~~P~i~~~~~g~~~~---------~~~~y---~g-~~~~~~l~~fi~~~~~~~~~~~~~~~~  280 (313)
                      +|+|.++||+++|++|....         .+..|   .| ..+++.|.+||.+.++..+.+.+|..-
T Consensus        98 ~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I~rp~ny  164 (178)
T 3ga4_A           98 DLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITVPQAFNV  164 (178)
T ss_dssp             HTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCCCCSCC-
T ss_pred             HcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccccCCCCh
Confidence            99999999999999987532         23456   35 789999999999999988887776543

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.77  E-value=5.4e-18  Score=152.77  Aligned_cols=239  Identities=12%  Similarity=0.099  Sum_probs=190.5

Q ss_pred             CCcccccCCCCCCHHHHHHHHHhcCCCceEEeCC-Cccccccc-CCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEE
Q 021368            6 TEKISYFADGKFDKSTIADFVFSNKLPLVTIFTR-ENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIF   83 (313)
Q Consensus         6 ~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~-~~~~~~~~-~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f   83 (313)
                      ++..+.| .|..+...|..||.....+.+..++. ++++.+.. ....++|.||.+  .|....+.|.++|..+.+.+.|
T Consensus       100 ~G~~~~y-~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~--~~~~~~~~f~~~A~~~~~~~~F  176 (367)
T 3us3_A          100 EDEVIEY-DGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKN--KDSEHYKAFKEAAEEFHPYIPF  176 (367)
T ss_dssp             TTEEEEC-CSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSC--TTCHHHHHHHHHHHHHTTTSCE
T ss_pred             CCcEEEe-CCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECC--CCchHHHHHHHHHHhhcCCcEE
Confidence            4567899 99999999999999999999999964 67887776 455677778877  4778889999999999988999


Q ss_pred             EEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCe
Q 021368           84 VYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDV  162 (313)
Q Consensus        84 ~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v  162 (313)
                      +.+..      ..+++++||. .  |+|++|+.....+..|.|. ++.++|.+||....-                 +.|
T Consensus       177 ~~~~~------~~~~~~~~v~-~--p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~-----------------p~v  230 (367)
T 3us3_A          177 FATFD------SKVAKKLTLK-L--NEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRR-----------------STL  230 (367)
T ss_dssp             EEECC------HHHHHHHTCC-T--TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCS-----------------CSE
T ss_pred             EEECC------HHHHHHcCCC-C--CeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCc-----------------cce
Confidence            98764      3789999996 3  8888998755567788885 999999999998643                 468


Q ss_pred             EEEcCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccc------cCCCC-cCc
Q 021368          163 KIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------RAKSD-GFP  234 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~------~~~v~-~~P  234 (313)
                      ..++.+++.+...+. .++.++.|+..+|..|..+...+..+|..+++...+.|+.+|+......      .|++. .+|
T Consensus       231 ~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P  310 (367)
T 3us3_A          231 RKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAP  310 (367)
T ss_dssp             EECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSC
T ss_pred             eecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCC
Confidence            899999998876543 4567788999999999999999999999999754599999999987642      27776 899


Q ss_pred             eEEEEeCCCCCcCceeecc---CcCHHHHHHHHHhcCCCCcc
Q 021368          235 TILFFPAGNKSFDPINVDV---DRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g---~~~~~~l~~fi~~~~~~~~~  273 (313)
                      +++++...........+.+   ..+.+.|.+|+++.+.-+++
T Consensus       311 ~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~  352 (367)
T 3us3_A          311 QIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEIN  352 (367)
T ss_dssp             EEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSC
T ss_pred             eEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcC
Confidence            9999976543101112443   68999999999998765444

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.76  E-value=4.2e-18  Score=125.92  Aligned_cols=104  Identities=25%  Similarity=0.506  Sum_probs=93.5

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|.+.+...+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|+++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            46889999999988877889999999999999999999999999999876  69999999998775  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|+.+.   .+.|..+.+.|.+||++.+
T Consensus        80 ~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           80 LFKNGEVAA---TKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEeCCEEEE---EEecCCCHHHHHHHHHHhh
Confidence            998887654   7889899999999998864

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.76  E-value=7.4e-18  Score=125.70  Aligned_cols=103  Identities=20%  Similarity=0.341  Sum_probs=92.9

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..++.++|++.+  .+++++|+||++||++|+.+.+.+.+++..+.+  ++.++.+|++.+..  .++++.++|++++|
T Consensus         3 v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQETAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             CEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT--TCEEEEEETTTCCSHHHHTTCCSBSEEEEE
T ss_pred             eEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            6788999999988  789999999999999999999999999999976  69999999998875  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      ++|+.+.   .+.|..+.+.|.+|+.++++.+
T Consensus        79 ~~G~~~~---~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           79 KDGEVVE---TSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHHHTTSCSC
T ss_pred             eCCEEEE---EEeCCCCHHHHHHHHHHHHHhh
Confidence            8887654   7899999999999999997644

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.76  E-value=2e-18  Score=128.31  Aligned_cols=104  Identities=20%  Similarity=0.306  Sum_probs=94.6

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      ..|..++.++|.+.+.+.+++++|+||++||++|+.+.+.+.+++..+.+  ++.++.+|++.+..  ..+++.++|+++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            45888999999999977889999999999999999999999999999876  69999999998875  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|..+.   ++.|..+.+.|.+||++.+
T Consensus        82 ~~~~g~~~~---~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           82 YFKDGEYKG---KMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             EEETTEEEE---EEESSCCHHHHHHHHHHHH
T ss_pred             EEECCEEEE---EEeccCCHHHHHHHHHHHh
Confidence            999888764   7899999999999999875

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.75  E-value=3.3e-17  Score=137.82  Aligned_cols=202  Identities=15%  Similarity=0.096  Sum_probs=158.5

Q ss_pred             EEe-CCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368           35 TIF-TRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        35 ~~l-t~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~  113 (313)
                      .+| +.+++++++.....++|.||.+|  |..+.+.|.++|..+. .+.|+...      +..+|+++++.   .|+|++
T Consensus        12 ~~l~s~~~~~~~l~~~~v~vVgff~~~--~~~~~~~f~~~A~~l~-~~~F~~t~------~~~v~~~~~v~---~p~i~l   79 (227)
T 4f9z_D           12 TWLTDVPAAMEFIAATEVAVIGFFQDL--EIPAVPILHSMVQKFP-GVSFGIST------DSEVLTHYNIT---GNTICL   79 (227)
T ss_dssp             EECCSHHHHHHHHHTSSEEEEEECSCS--CSTHHHHHHHHTTTCT-TSEEEEEC------CHHHHHHTTCC---SSEEEE
T ss_pred             eeeCCHHHHHHHHhcCCeEEEEEecCC--CchhHHHHHHHHHhCC-CceEEEEC------CHHHHHHcCCC---CCeEEE
Confidence            344 45778887777777778899884  8999999999999995 68898753      34899999995   388888


Q ss_pred             EcCCCCceeccC----CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCC
Q 021368          114 TGNDDAKKHILD----GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPW  189 (313)
Q Consensus       114 ~~~~~~~~~~~~----g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~  189 (313)
                      |+.....+..|.    |.++.+.|.+||.+..-                 +.|..++.+++.++........+++|+.+|
T Consensus        80 fk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~-----------------plv~e~t~~n~~~~~~~~~~~~~l~f~~~~  142 (227)
T 4f9z_D           80 FRLVDNEQLNLEDEDIESIDATKLSRFIEINSL-----------------HMVTEYNPVTVIGLFNSVIQIHLLLIMNKA  142 (227)
T ss_dssp             EETTTTEEEEECHHHHHTCCHHHHHHHHHHHCC-----------------CSEEECCHHHHHHHHHSSCCEEEEEEECTT
T ss_pred             EEecCcccccccccccCCCCHHHHHHHHHHhCC-----------------CceeecCcccHHHHhccCCceEEEEEEcCC
Confidence            886544455677    47999999999999743                 568899999999887443355667788999


Q ss_pred             CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCC--cCceEEEEeCCCCCcCceee-ccCcCHHHHHH
Q 021368          190 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSD--GFPTILFFPAGNKSFDPINV-DVDRTVVALYK  262 (313)
Q Consensus       190 C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~v~--~~P~i~~~~~g~~~~~~~~y-~g~~~~~~l~~  262 (313)
                      |..|..+.+.|.++|+.+++  .+.|+.+|++.  +..  ..|++.  .+|+++++..+...  ...+ .+..+.+.|.+
T Consensus       143 ~~~~~~~~~~~~~vAk~~k~--~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~--ky~~~~~~~t~~~i~~  218 (227)
T 4f9z_D          143 SPEYEENMHRYQKAAKLFQG--KILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDE--WDTLPTAEVSVEHVQN  218 (227)
T ss_dssp             STTHHHHHHHHHHHHHHTTT--TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCC--EEEETTCCCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhC--CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCc--cccCCcCCCCHHHHHH
Confidence            99999999999999999998  69999999974  222  678887  89999999865432  1133 36789999999


Q ss_pred             HHHhcCC
Q 021368          263 FLKKNAS  269 (313)
Q Consensus       263 fi~~~~~  269 (313)
                      |+++.+.
T Consensus       219 Fv~~~~~  225 (227)
T 4f9z_D          219 FCDGFLS  225 (227)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            9998753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.75  E-value=1.2e-17  Score=123.05  Aligned_cols=104  Identities=22%  Similarity=0.415  Sum_probs=93.4

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|.+.+...+++++|+||++||++|+.+.+.+.+++..+.+  ++.++.+|++.+..  ..+++.++|+++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--SEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC--cEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            46889999999988877789999999999999999999999999999976  69999999998775  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|..+.   .+.|..+.+.|.+||++++
T Consensus        80 ~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           80 LVRDGKVID---KKVGALPKSQLKAWVESAQ  107 (107)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHTC
T ss_pred             EEeCCEEEE---EecCCCCHHHHHHHHHhcC
Confidence            998888754   7889899999999998763

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.75  E-value=2.2e-18  Score=131.27  Aligned_cols=104  Identities=11%  Similarity=0.070  Sum_probs=94.0

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCC--ccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWC--GHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C--~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      .....++.++|++.+.+.+++++|+||++||  ++|+.+.|++.+++..|.+  .+.|+++|++.+..  .+|+|.++||
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~--~v~~~KVdvDe~~~la~~ygV~siPT   92 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG--RLVAAEVAAEAERGLMARFGVAVCPS   92 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT--TEEEEEECGGGHHHHHHHHTCCSSSE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCccCCE
Confidence            3456899999999997666699999999999  9999999999999999976  79999999998876  7999999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +++|++|+.+.   +..|..+.+.|.+||++++
T Consensus        93 lilFkdG~~v~---~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           93 LAVVQPERTLG---VIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEEEECCEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCEEEE---EEeCCCCHHHHHHHHHHHh
Confidence            99999999986   8899999999999999886

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.75  E-value=9.9e-18  Score=128.17  Aligned_cols=104  Identities=24%  Similarity=0.471  Sum_probs=93.5

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|++.+...+++++|+||++||++|+.+.+.|.+++..+.+  ++.++.+|++.+..  ..|++.++|+++
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   99 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   99 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT--TEEEEEEETTTCCTTSGGGTCCSSSEEE
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCccCEEE
Confidence            56889999999988877889999999999999999999999999999876  69999999998775  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|+.+.   .+.|..+.+.|.+||++.+
T Consensus       100 ~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          100 LFKNGEVAA---TKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEeCCEEEE---EEcCCCCHHHHHHHHHHhh
Confidence            998887654   7889999999999998864

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=9.1e-18  Score=130.19  Aligned_cols=110  Identities=33%  Similarity=0.664  Sum_probs=96.2

Q ss_pred             CCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCc
Q 021368          158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       158 ~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      ....|..++.++|++.+ ..+++++|+||++||++|+.+.+.|.+++..+.+. ..+.++.+|++.+..  .+|++.++|
T Consensus        15 ~~~~v~~l~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P   93 (140)
T 2dj1_A           15 EENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYP   93 (140)
T ss_dssp             EETTEEECCTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSS
T ss_pred             CCCCCEEcChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccC
Confidence            35779999999999977 45789999999999999999999999999998763 249999999998765  789999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      ++++|++|+ +.   .|.|..+.+.|.+||++++....
T Consensus        94 t~~~~~~G~-~~---~~~g~~~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           94 TIKILKKGQ-AV---DYDGSRTQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             EEEEEETTE-EE---ECCSCCCHHHHHHHHHHHHSSSC
T ss_pred             eEEEEECCc-EE---EcCCCCCHHHHHHHHHHhcCCCC
Confidence            999998887 42   89999999999999999976544

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=8.7e-18  Score=129.01  Aligned_cols=108  Identities=33%  Similarity=0.586  Sum_probs=95.3

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC--CCcEEEEEEeCCCccc--ccCCCCcCc
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG--VDSIVIAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~--~~~v~~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      ...|..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+..  ...+.++.+|++.+..  .+|++.++|
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   85 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFP   85 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSS
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeC
Confidence            467899999999998877789999999999999999999999999999871  1269999999998765  789999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++++|.+|..+.   .|.|..+.+.|.+||.+.+.
T Consensus        86 t~~~~~~g~~~~---~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           86 TIKIFQKGESPV---DYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             EEEEEETTEEEE---EECSCCSHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCceE---EecCCCCHHHHHHHHHHHhh
Confidence            999999877543   89999999999999999864

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.74  E-value=1.1e-17  Score=124.21  Aligned_cols=103  Identities=30%  Similarity=0.611  Sum_probs=92.5

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      +.|..++.++|++.+.  +++++|+||++||++|+.+.+.|.+++..+... ..+.++.+|++.+..  .++++.++|++
T Consensus         5 ~~v~~l~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            5 STVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             CCSEECCTTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcceEcChhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence            5688999999999986  779999999999999999999999999987643 479999999998865  79999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      ++|++|+.+.   .+.|..+.+.|.+||.++
T Consensus        83 ~~~~~g~~~~---~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGGKKVS---EHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETTEEEE---EECSCCSHHHHHHHHHHH
T ss_pred             EEEeCCcEEE---eccCCcCHHHHHHHHHhc
Confidence            9999988754   899999999999999876

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=1.5e-17  Score=127.19  Aligned_cols=106  Identities=29%  Similarity=0.530  Sum_probs=94.7

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      .+.|..++.++|++.+...+++++|+||++||++|+.+.+.|.+++..+.+  .+.++.+|++.+..  .++++.++|++
T Consensus        16 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (130)
T 2dml_A           16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQSLGGQYGVQGFPTI   93 (130)
T ss_dssp             TSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             CCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHcCCCccCEE
Confidence            467899999999998877889999999999999999999999999999876  58999999998865  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|.+|..  ....|.|..+.+.|.+||.+.+
T Consensus        94 ~~~~~~~~--~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           94 KIFGANKN--KPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             EEESSCTT--SCEECCSCCSHHHHHHHHHHHH
T ss_pred             EEEeCCCC--eEEEeecCCCHHHHHHHHHHHH
Confidence            99988776  2348999999999999999875

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.73  E-value=1.8e-17  Score=124.58  Aligned_cols=110  Identities=35%  Similarity=0.661  Sum_probs=96.2

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      +.|..++.++|++.+. .+++++|+||++||++|+.+.+.+.+++..++.. ..+.++.+|++.+..  .++++.++|++
T Consensus         7 ~~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (120)
T 1mek_A            7 DHVLVLRKSNFAEALA-AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             TTEEECCTTTHHHHHH-HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCcEEechhhHHHHHc-cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEE
Confidence            5688999999999774 6789999999999999999999999999998753 369999999998765  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      ++|++|+.+ .+..|.|..+.+.|.+||+++++..
T Consensus        86 ~~~~~g~~~-~~~~~~g~~~~~~l~~~l~~~~~~~  119 (120)
T 1mek_A           86 KFFRNGDTA-SPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEESSCSS-SCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEeCCCcC-CcccccCccCHHHHHHHHHhccCCC
Confidence            999988865 3458999999999999999987654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.73  E-value=9.6e-18  Score=129.80  Aligned_cols=105  Identities=11%  Similarity=0.137  Sum_probs=87.8

Q ss_pred             eEEEc-CcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          162 VKIVV-GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l~-~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      |..|+ .++|++.+++ .+++++|.|||+||++|+.+.|.+.++|.++.+  .+.|+++|++.+..  ..|+|.+.||++
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~--~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN--FCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            44454 4789988874 678999999999999999999999999999976  69999999999887  799999999999


Q ss_pred             EEeCCCCC--c----CceeeccCcC-HHHHHHHHHhcC
Q 021368          238 FFPAGNKS--F----DPINVDVDRT-VVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~--~----~~~~y~g~~~-~~~l~~fi~~~~  268 (313)
                      +|++|+.+  .    +.-...|... .+.|.++|..++
T Consensus       101 fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          101 FFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             EEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            99999874  0    0014677655 889999998875

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.73  E-value=1.5e-17  Score=123.77  Aligned_cols=105  Identities=24%  Similarity=0.459  Sum_probs=93.7

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|.+.+.+.+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|+++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   82 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLNIDENPGTAAKYGVMSIPTLN   82 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC--CeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence            45789999999998877789999999999999999999999999999876  59999999998765  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++|..+.   .+.|..+.+.|.+||++.+.
T Consensus        83 ~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           83 VYQGGEVAK---TIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHTHHHHC
T ss_pred             EEeCCEEEE---EEeCCCCHHHHHHHHHHHhh
Confidence            999887754   78899999999999988753

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.73  E-value=8.2e-18  Score=126.89  Aligned_cols=107  Identities=24%  Similarity=0.420  Sum_probs=95.2

Q ss_pred             CCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCc
Q 021368          157 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       157 ~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      .....+..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+..  .+.++.+|++.+..  .+|++.++|
T Consensus        10 ~~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~P   87 (119)
T 1w4v_A           10 HGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHTDLAIEYEVSAVP   87 (119)
T ss_dssp             CCCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--SSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             CCceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCHHHHHHcCCCccc
Confidence            34577889999999998888889999999999999999999999999999876  69999999998765  789999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++++|++|+.+.   .+.|..+.+.|.+||++.+
T Consensus        88 t~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           88 TVLAMKNGDVVD---KFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEE---EEcCCCCHHHHHHHHHHHh
Confidence            999998887654   7889889999999998864

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.73  E-value=1.8e-17  Score=121.96  Aligned_cols=101  Identities=27%  Similarity=0.387  Sum_probs=91.7

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      .+..++.++|.+.+  .+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  ..+++.++|++++
T Consensus         4 ~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 3die_A            4 AIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENPSTAAKYEVMSIPTLIV   79 (106)
T ss_dssp             CCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             ceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEECCcCHHHHHhCCCcccCEEEE
Confidence            57889999999988  789999999999999999999999999999986  59999999998875  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      |++|+.+.   .+.|..+.+.|.+||++++
T Consensus        80 ~~~G~~~~---~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           80 FKDGQPVD---KVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EETTEEEE---EEESCCCHHHHHHHHHTTC
T ss_pred             EeCCeEEE---EEeCCCCHHHHHHHHHHhC
Confidence            99887764   7899999999999998764

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=3.9e-17  Score=126.03  Aligned_cols=109  Identities=16%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             CCCeEEEcCcChHHHhhcC--CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~--~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i  236 (313)
                      .+.|..++.++|.+.+...  +++++|+||++||++|+.+.|.|.+++..+.   .+.|+.+|++.+. .+|+|.++||+
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~~-~~~~i~~~Pt~   84 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSCI-EHYHDNCLPTI   84 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSSC-SSCCSSCCSEE
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcCc-ccCCCCCCCEE
Confidence            3668889999999988654  3689999999999999999999999999874   5999999998764 78999999999


Q ss_pred             EEEeCCCCCcCceeeccCc-------CHHHHHHHHHhcCCCCccc
Q 021368          237 LFFPAGNKSFDPINVDVDR-------TVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~-------~~~~l~~fi~~~~~~~~~~  274 (313)
                      ++|++|+.+.   ++.|..       +.+.|.++|.++...+.+.
T Consensus        85 ~~~~~G~~v~---~~~G~~~~~~~~~~~~~l~~~l~~~~~i~~~~  126 (135)
T 2dbc_A           85 FVYKNGQIEG---KFIGIIECGGINLKLEELEWKLSEVGAIQSDL  126 (135)
T ss_dssp             EEESSSSCSE---EEESTTTTTCTTCCHHHHHHHHHHHTSSCCCS
T ss_pred             EEEECCEEEE---EEEeEEeeCCCcCCHHHHHHHHHHcCCccccc
Confidence            9999998775   666643       7899999999997655443

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.73  E-value=2.1e-17  Score=124.07  Aligned_cols=103  Identities=16%  Similarity=0.221  Sum_probs=88.6

Q ss_pred             CCeEEEcCcChHHHhhcCCC--cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESK--DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k--~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~  237 (313)
                      +.|..++.++|.+.+.+.++  +++|+||++||++|+.+.|.+.++|.++.   ++.|+++|++.. ..+|+|.++||++
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~-~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC-IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT-STTCCGGGCSEEE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HHHCCCCCCCEEE
Confidence            46788999999998876554  89999999999999999999999999885   489999999876 5889999999999


Q ss_pred             EEeCCCCCcCceeecc-------CcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDV-------DRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g-------~~~~~~l~~fi~~~~~  269 (313)
                      +|++|..+.   ++.|       ..+.+.|..+|.+..-
T Consensus        79 ~fk~G~~v~---~~~G~~~~gg~~~~~~~le~~L~~~g~  114 (118)
T 3evi_A           79 VYKNGQIEA---KFIGIIECGGINLKLEELEWKLAEVGA  114 (118)
T ss_dssp             EEETTEEEE---EEESTTTTTCSSCCHHHHHHHHHTTTS
T ss_pred             EEECCEEEE---EEeChhhhCCCCCCHHHHHHHHHHcCC
Confidence            999999876   5555       3478999999987654

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.72  E-value=2.7e-17  Score=121.54  Aligned_cols=103  Identities=25%  Similarity=0.467  Sum_probs=93.1

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|++.+. .+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  ..+++.++|+++
T Consensus         4 ~~v~~l~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   80 (109)
T 3tco_A            4 DVTLVLTEENFDEVIR-NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDENQKIADKYSVLNIPTTL   80 (109)
T ss_dssp             CCCEECCTTTHHHHHH-HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CeEEEecHHHHHHHHh-cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC--CceEEEEccccCHHHHHhcCcccCCEEE
Confidence            5678899999999884 589999999999999999999999999999986  69999999998865  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|..+.   .+.|..+.+.|.+||++.+
T Consensus        81 ~~~~g~~~~---~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           81 IFVNGQLVD---SLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHC
T ss_pred             EEcCCcEEE---eeeccCCHHHHHHHHHHHh
Confidence            998888764   7999999999999999875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.72  E-value=2.4e-17  Score=123.07  Aligned_cols=105  Identities=22%  Similarity=0.392  Sum_probs=94.4

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|.+.+...+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|+++
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~   84 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALR   84 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC--cEEEEEEEcCCCHHHHHHcCCCceeEEE
Confidence            56889999999998877889999999999999999999999999999876  59999999998765  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++|..+.   .+.|..+.+.|.+||.+.++
T Consensus        85 ~~~~G~~~~---~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           85 LVKGEQILD---STEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHHC
T ss_pred             EEcCCEEEE---EecCCCCHHHHHHHHHHHhc
Confidence            998887654   78898999999999998764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.72  E-value=3.7e-17  Score=126.30  Aligned_cols=108  Identities=25%  Similarity=0.422  Sum_probs=94.0

Q ss_pred             CCCeEEEcCcChHHHhhc-----------CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--
Q 021368          159 DGDVKIVVGNNFDEIVLD-----------ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--  225 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~-----------~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--  225 (313)
                      ...|..++.++|.+.+.+           .+++++|+||++||++|+.+.+.|.+++..+.+  .+.++.+|++.+..  
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~   85 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQELA   85 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHH
Confidence            457889999999998864           468999999999999999999999999999876  59999999998765  


Q ss_pred             ccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368          226 HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       226 ~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      .+|++.++|++++| ++|..+    .+.|..+.+.|.+||.+.++...
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~~~----~~~G~~~~~~l~~~l~~~~~~~~  129 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGKPE----MAQGAMPKASFKKAIDEFLLKKE  129 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSCCE----EEESCCCHHHHHHHHHHHHTSCT
T ss_pred             HHcCCCCCCEEEEECCCCcEE----EEeCCCCHHHHHHHHHHHhhccC
Confidence            78999999999999 666653    68899999999999999975443

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.72  E-value=9.7e-18  Score=130.27  Aligned_cols=107  Identities=22%  Similarity=0.333  Sum_probs=96.6

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      ...|..++.++|.+.+...+++++|+||++||++|+.+.+.|.+++..+.+  .+.|+.+|++.+..  ..|++.++|++
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNPWTAEKYGVQGTPTF   82 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTCHHHHHHHTCCEESEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCcCHhHHHHCCCCcCCEE
Confidence            356899999999977777899999999999999999999999999999987  69999999998865  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      ++|++|..+.   .+.|..+.+.|.+||.+.+..
T Consensus        83 ~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           83 KFFCHGRPVW---EQVGQIYPSILKNAVRDMLQH  113 (140)
T ss_dssp             EEEETTEEEE---EEESSCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCcEEE---EEcCCCCHHHHHHHHHHHhcc
Confidence            9999888764   899999999999999998754

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.72  E-value=2.1e-17  Score=121.89  Aligned_cols=102  Identities=23%  Similarity=0.478  Sum_probs=91.5

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..++.++|.+.+...+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCCcCCEEEEE
Confidence            678999999998877789999999999999999999999999999876  59999999998765  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|..+.   .+.|..+.+.|.++|++.+
T Consensus        81 ~~G~~~~---~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           81 KGGKKCE---TIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSSSEEE---EEESCCCHHHHHHHHHHHC
T ss_pred             eCCEEEE---EEeCCCCHHHHHHHHHHHh
Confidence            8887654   7889899999999998875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3.8e-17  Score=124.40  Aligned_cols=108  Identities=26%  Similarity=0.490  Sum_probs=92.3

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      .+.|..++.++|++.+.   +.++|+||++||++|+.+.+.|.+++..+.+. ++.++.+|++.+..  .+|++.++|++
T Consensus         6 ~~~v~~l~~~~f~~~~~---~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            6 SGNVRVITDENWRELLE---GDWMIEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCSEEECCTTTHHHHTS---SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCccEEecHHHHHHHhC---CCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            46789999999998763   23999999999999999999999999998742 58999999998875  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      ++|++|..    ..|.|..+.+.|.+||.+.+......
T Consensus        82 ~~~~~G~~----~~~~G~~~~~~l~~~l~~~~~~~~~~  115 (126)
T 1x5e_A           82 YHCKDGEF----RRYQGPRTKKDFINFISDKEWKSIEP  115 (126)
T ss_dssp             EEEETTEE----EECCSCCCHHHHHHHHHTCGGGGSCE
T ss_pred             EEEeCCeE----EEeecCCCHHHHHHHHHHHhhccCCC
Confidence            99988763    28999999999999999987554443

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.72  E-value=5.4e-17  Score=136.06  Aligned_cols=111  Identities=23%  Similarity=0.461  Sum_probs=99.2

Q ss_pred             CCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          156 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       156 ~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      ....+.+..++.++|++.+.+.+++++|+||++||++|+.+.+.|.+++..+++  .+.++.+|++.+..  .+|+|.++
T Consensus         8 ~~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~   85 (222)
T 3dxb_A            8 HPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGI   85 (222)
T ss_dssp             -CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCTTTGGGGTCCSB
T ss_pred             CCCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCCCHHHHHHcCCCcC
Confidence            344678899999999998878899999999999999999999999999999986  59999999998865  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      |++++|++|+.+.   .+.|..+.+.|.+||.+.+...
T Consensus        86 Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           86 PTLLLFKNGEVAA---TKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             SEEEEEETTEEEE---EEESCCCHHHHHHHHHHHSCCS
T ss_pred             CEEEEEECCeEEE---EeccccChHHHHHHHHhhcccc
Confidence            9999999888764   8899999999999999998643

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.72  E-value=3.5e-17  Score=120.15  Aligned_cols=102  Identities=26%  Similarity=0.524  Sum_probs=91.1

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..++.++|.+.+...+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|++++|
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC--ceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            567899999998877789999999999999999999999999999876  59999999998765  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|..+.   .+.|..+.+.|.++|++.+
T Consensus        80 ~~g~~~~---~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           80 KNGERKE---SIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             ETTEEEE---EEEECCCHHHHHHHHHHHC
T ss_pred             eCCeEEE---EEecCCCHHHHHHHHHhhC
Confidence            9887754   7889899999999998763

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.72  E-value=2e-17  Score=125.51  Aligned_cols=105  Identities=25%  Similarity=0.504  Sum_probs=88.5

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCc--------------cchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCG--------------HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH  225 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~--------------~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~  225 (313)
                      +.|..++.++|++.+.+.+++++|+||++||+              +|+.+.|.|.+++..+.+  ++.++.+|++.+..
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~--~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPG   80 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCTT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC--CeEEEEEECCCCHH
Confidence            45788999999988877889999999999999              999999999999998876  59999999998875


Q ss_pred             --ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          226 --HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       226 --~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                        .+|++.++|++++|++|..+.   .+.|..+.+.|.+||+++++
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGEVAA---TKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSSEEE---EEESCCCHHHHHHHHTTTCC
T ss_pred             HHHHcCCCccCEEEEEECCEEEE---EEeCCCCHHHHHHHHHHHhC
Confidence              789999999999998888764   79999999999999988753

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.71  E-value=3.4e-17  Score=120.92  Aligned_cols=104  Identities=24%  Similarity=0.444  Sum_probs=91.4

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      .|..++.++|.+.+ ..+++++|+||++||++|+.+.+.+.+++..+.+  ++.++.+|++.+..  .++++.++|++++
T Consensus         2 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (109)
T 2yzu_A            2 KPIEVTDQNFDETL-GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLDVDENPKTAMRYRVMSIPTVIL   78 (109)
T ss_dssp             CCEECCTTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEccHhHHHHHh-cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--ceEEEEEECCCCHhHHHhCCCCcCCEEEE
Confidence            47789999999665 5688999999999999999999999999999986  69999999998875  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      |++|+.+.   .+.|..+.+.|.+||++.++.
T Consensus        79 ~~~g~~~~---~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           79 FKDGQPVE---VLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EETTEEEE---EEESCCCHHHHHHHHHTTC--
T ss_pred             EeCCcEee---eEeCCCCHHHHHHHHHHHhhh
Confidence            98887654   788999999999999998754

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.71  E-value=2.3e-17  Score=130.47  Aligned_cols=106  Identities=23%  Similarity=0.499  Sum_probs=94.7

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      .+.+..++.++|.+.+ ..+++++|+||++||++|+.+.+.|.+++..+.+  .+.|+.+|++.+..  .+|+|.++|++
T Consensus        46 ~~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~  122 (155)
T 2ppt_A           46 TGKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAF  122 (155)
T ss_dssp             CSSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTSTHHHHHTTCCSSSEE
T ss_pred             CCCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC--CEEEEEEeCCccHHHHHHcCCCcCCEE
Confidence            3567889999999988 6789999999999999999999999999999986  59999999998875  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      ++|++|+.+.   ++.|..+.+.|.+||++.++.
T Consensus       123 ~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          123 ILFHKGRELA---RAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEETTEEEE---EEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEeCCeEEE---EecCCCCHHHHHHHHHHHhcc
Confidence            9999888764   789999999999999998754

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.71  E-value=2.7e-17  Score=124.10  Aligned_cols=106  Identities=25%  Similarity=0.443  Sum_probs=94.3

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      ...|..++.++|.+.+...+++++|+||++||++|+.+.+.+.+++..+.+  ++.++.+|++.+..  .++++.++|++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~   88 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNPETARNFQVVSIPTL   88 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhcCCCcCCEE
Confidence            467889999999998877889999999999999999999999999999876  69999999998765  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++|++|..+.   .+.|..+.+.|.+||++.++
T Consensus        89 ~~~~~g~~~~---~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           89 ILFKDGQPVK---RIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEETTEEEE---EEESCCCHHHHHHHTCSCCC
T ss_pred             EEEECCEEEE---EecCCCCHHHHHHHHHHHHh
Confidence            9999887654   78999999999999988764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.71  E-value=3.9e-17  Score=120.01  Aligned_cols=101  Identities=20%  Similarity=0.393  Sum_probs=89.1

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..++.++|.+.+ ..+++++|+||++||++|+.+.+.+.+++..+.+  .+.++.+|++.+..  .++++.++|++++|
T Consensus         2 v~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            2 TMTLTDANFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHH-SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccHHhHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence            6789999999654 6779999999999999999999999999999876  59999999998765  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|+.+.   .+.|..+.+.|.+||.+.+
T Consensus        79 ~~G~~~~---~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           79 KGGRPVK---QLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHTTTTT
T ss_pred             eCCeEEE---EEecCCCHHHHHHHHHHHh
Confidence            8887654   7889899999999998765

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.71  E-value=4e-17  Score=126.71  Aligned_cols=107  Identities=21%  Similarity=0.370  Sum_probs=92.7

Q ss_pred             CCCCeEEEcCcChHHHhhc-----------CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-
Q 021368          158 NDGDVKIVVGNNFDEIVLD-----------ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-  225 (313)
Q Consensus       158 ~~~~v~~l~~~~f~~~l~~-----------~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-  225 (313)
                      ....|..++.++|.+.+.+           .+++++|+||++||++|+.+.+.|.+++..+.+  .+.++.+|++.+.. 
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~   97 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEPEL   97 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEECCCCHHH
Confidence            3567899999999998876           478999999999999999999999999999986  69999999998865 


Q ss_pred             -ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          226 -HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       226 -~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                       ..|++.++|++++|..+..+   +.+.|..+.+.|.+||.+.+.
T Consensus        98 ~~~~~v~~~Pt~~~~~~~g~~---~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           98 ARDFGIQSIPTIWFVPMKGEP---QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHHTTCCSSSEEEEECSSSCC---EEEESCCCHHHHHHHHHHTTC
T ss_pred             HHHcCCCCcCEEEEEeCCCCE---EEEeCCCCHHHHHHHHHHHHc
Confidence             79999999999999655443   288999999999999999875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.71  E-value=3.7e-18  Score=130.58  Aligned_cols=102  Identities=15%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCC--CccchhhhHHHHHHHHHhcCCCc-EEEEEEeCCCccc--ccCCCCcCce
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~--C~~C~~~~~~~~~la~~~~~~~~-v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      .+..++.++|++.+. .+++++|+||++|  |++|+.+.|++.+++..|.+  . +.|+++|++.+..  .+|+|.++||
T Consensus        18 g~~~~t~~~F~~~v~-~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g--~~v~~~KVdvDe~~~lA~~ygV~sIPT   94 (140)
T 2qgv_A           18 GWTPVSESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD--YTWQVAIADLEQSEAIGDRFGAFRFPA   94 (140)
T ss_dssp             TCEECCHHHHHHHHH-TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT--SCCEEEECCHHHHHHHHHHHTCCSSSE
T ss_pred             CCccCCHHHHHHHHh-CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC--CeEEEEEEECCCCHHHHHHcCCccCCE
Confidence            356899999999984 7789999999999  99999999999999999976  6 9999999998876  7999999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +++|++|+.+.   +..|..+...|.+||++++
T Consensus        95 lilFk~G~~v~---~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           95 TLVFTGGNYRG---VLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             EEEEETTEEEE---EEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCEEEE---EEecCCCHHHHHHHHHHHh
Confidence            99999999986   8899899999999999886

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.71  E-value=3.8e-17  Score=128.07  Aligned_cols=105  Identities=21%  Similarity=0.520  Sum_probs=95.5

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      .+.+..++.++|.+.+ ..+++++|+||++||++|+.+.+.|.+++..+..  ++.++.+|++.+..  .+|++.++|++
T Consensus        37 ~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~  113 (148)
T 3p2a_A           37 DGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEPALSTRFRIRSIPTI  113 (148)
T ss_dssp             CCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC--ceEEEEEECcCCHHHHHHCCCCccCEE
Confidence            4678999999999988 7789999999999999999999999999999876  69999999998876  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++|++|+.+.   +|.|..+.+.|.+||++.+.
T Consensus       114 ~~~~~G~~~~---~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          114 MLYRNGKMID---MLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             EEEETTEEEE---EESSCCCHHHHHHHHHHHHH
T ss_pred             EEEECCeEEE---EEeCCCCHHHHHHHHHHHhc
Confidence            9999888764   79999999999999999864

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.71  E-value=2.3e-17  Score=124.76  Aligned_cols=105  Identities=21%  Similarity=0.481  Sum_probs=92.2

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|.+.+...+++++|+||++||++|+.+.+.|.+++..+.+  ++.++.+|++.+..  .++++.++|+++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK   80 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCHHHHHHcCCCccceEE
Confidence            45888999999887777889999999999999999999999999999986  69999999998875  789999999999


Q ss_pred             EEeCCCCCcCceeeccC----cCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVD----RTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~----~~~~~l~~fi~~~~~  269 (313)
                      +|.+|..+.   .+.|.    .+.+.|.+||.+.+.
T Consensus        81 ~~~~~~~~~---~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           81 LYQYERAKK---SIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEGGGT---EEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEeCCCccc---eeeccccCcCCHHHHHHHHHHHHH
Confidence            997776653   66664    799999999998864

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=8.3e-17  Score=140.75  Aligned_cols=115  Identities=26%  Similarity=0.492  Sum_probs=98.8

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc--cc--ccCCCCcCc
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EH--HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~--~~--~~~~v~~~P  234 (313)
                      ...|..|+.++|++.+.+.+++++|+|||+||++|+.+.|.|.+++..+.+  .+.++.+||+..  ..  .+|+|.++|
T Consensus        16 ~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~--~~~~~~v~~d~~~~~~l~~~~~I~~~P   93 (298)
T 3ed3_A           16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG--VVQVAAVNCDLNKNKALCAKYDVNGFP   93 (298)
T ss_dssp             CTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTSTTTHHHHHHTTCCBSS
T ss_pred             CCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccC--CcEEEEEEccCccCHHHHHhCCCCccc
Confidence            577999999999999977789999999999999999999999999999976  588999999843  22  789999999


Q ss_pred             eEEEEeCCCCC--------------cCceeeccCcCHHHHHHHHHhcCCCCcccc
Q 021368          235 TILFFPAGNKS--------------FDPINVDVDRTVVALYKFLKKNASIPFKIQ  275 (313)
Q Consensus       235 ~i~~~~~g~~~--------------~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~  275 (313)
                      ++++|++|..+              ..+..|.|.++.+.|.+|+.+.++......
T Consensus        94 t~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i  148 (298)
T 3ed3_A           94 TLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKF  148 (298)
T ss_dssp             EEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEEC
T ss_pred             eEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEc
Confidence            99999998620              025689999999999999999987665543

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.70  E-value=2.3e-17  Score=123.85  Aligned_cols=102  Identities=19%  Similarity=0.344  Sum_probs=88.7

Q ss_pred             CCeEEEcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          160 GDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      ......+.++|++.+.+ .+++++|+||++||++|+.+.+.|.+++..+.+   +.|+.+|++.+..  ..|++.++|++
T Consensus        12 ~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~vd~d~~~~l~~~~~v~~~Pt~   88 (116)
T 3qfa_C           12 SVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKSMPTF   88 (116)
T ss_dssp             CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT---SEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             cccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCccccEE
Confidence            44556788999998853 689999999999999999999999999988754   8999999998865  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|++|+.+.   .+.|. +.+.|.+||++++
T Consensus        89 ~~~~~G~~~~---~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           89 QFFKKGQKVG---EFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EEESSSSEEE---EEESC-CHHHHHHHHHHHC
T ss_pred             EEEeCCeEEE---EEcCC-CHHHHHHHHHHhC
Confidence            9998888764   78888 9999999998764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.70  E-value=9.5e-17  Score=119.30  Aligned_cols=103  Identities=24%  Similarity=0.386  Sum_probs=88.3

Q ss_pred             CCCeEEEcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCCCCcCc
Q 021368          159 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~v~~~P  234 (313)
                      .+.|..++.++|.+.+.+ .+++++|+||++||++|+.+.+.+.+++..+.+   +.++.+|++ .+..  .+|++.++|
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~---v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC---eEEEEEecCcchHHHHHHcCCCeee
Confidence            467899999999998864 578999999999999999999999999998863   899999998 3433  789999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++++|++|..+.   .+.|. +.+.|.++|++.+
T Consensus        81 t~~~~~~G~~~~---~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKILKENSVVG---EVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEESSSSEEE---EEESS-CHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEE---EEcCC-CHHHHHHHHHHhh
Confidence            999998888754   67786 4889999998763

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.69  E-value=1e-16  Score=134.88  Aligned_cols=142  Identities=23%  Similarity=0.409  Sum_probs=120.9

Q ss_pred             CCcccCCcccccCCC----CCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEE-eeC-CchhhhhHHHHHHH
Q 021368            1 MVKKETEKISYFADG----KFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF-AVS-NDSEKLLPVFEEAA   74 (313)
Q Consensus         1 ~~~~~~~~~~~y~~g----~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~-~~~-~~c~~~~~~~~~~a   74 (313)
                      |||..++....| +|    +++..+|.+||..+..|+|.++|.+++..++..+.+..+++| .+| .+|+.+.+.|+++|
T Consensus        79 lfk~~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA  157 (227)
T 4f9z_D           79 LFRLVDNEQLNL-EDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAA  157 (227)
T ss_dssp             EEETTTTEEEEE-CHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHH
T ss_pred             EEEecCcccccc-cccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHH
Confidence            467777788899 84    799999999999999999999999999999887767666655 557 88999999999999


Q ss_pred             HhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHHhcCC
Q 021368           75 KSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGK  144 (313)
Q Consensus        75 ~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~~~~~  144 (313)
                      ++|++++.|+++|+++.. +..+++.||+.....|++++++.....+|.+. +..+.++|.+|+.+++.|+
T Consensus       158 k~~k~~i~F~~vd~~~~~-~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          158 KLFQGKILFILVDSGMKE-NGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             HHTTTTCEEEEEETTSGG-GHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             HHhhCCEEEEEeCCccHh-HHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence            999999999999998644 66789999998444599999987655556664 7899999999999999874

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.69  E-value=7.5e-17  Score=117.90  Aligned_cols=101  Identities=20%  Similarity=0.366  Sum_probs=89.6

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..++.++|++.+ ..+++++|+||++||++|+.+.+.+.+++..+.+   +.++.+|++.+..  ..+++.++|++++|
T Consensus         1 V~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   76 (104)
T 2e0q_A            1 VIHLDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENPDIAARYGVMSLPTVIFF   76 (104)
T ss_dssp             CEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC---ceEEEEECCCCHHHHHhCCccccCEEEEE
Confidence            4678999999988 5688999999999999999999999999998865   8999999998765  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++|..+.   .+.|..+.+.|.+||.+.++
T Consensus        77 ~~g~~~~---~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           77 KDGEPVD---EIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHHHHHHT
T ss_pred             ECCeEhh---hccCCCCHHHHHHHHHHHhc
Confidence            8887654   78899999999999998754

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.69  E-value=4.2e-17  Score=120.08  Aligned_cols=96  Identities=17%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368          166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~  243 (313)
                      +.++|++.+ +.+++++|+||++||++|+.+.|.+.+++..+.   ++.++.+|++.+..  .+|++.++|++++|++|+
T Consensus         7 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~   82 (105)
T 4euy_A            7 TIEELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK   82 (105)
T ss_dssp             ---CCSSST-TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------CCCCEEEEEETTE
T ss_pred             CHHHHHHHH-hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe
Confidence            457777776 578999999999999999999999999999873   59999999998875  789999999999999888


Q ss_pred             CCcCceeeccCcCHHHHHHHHHhcC
Q 021368          244 KSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       244 ~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .+.   ++.|..+.+.|.++|++++
T Consensus        83 ~~~---~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           83 EIL---RESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEE---EEESSCCHHHHHHHHHTTC
T ss_pred             EEE---EEeCCcCHHHHHHHHHHhh
Confidence            764   7889999999999998875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.69  E-value=1.2e-16  Score=117.89  Aligned_cols=101  Identities=18%  Similarity=0.271  Sum_probs=85.3

Q ss_pred             eEEE-cCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          162 VKIV-VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l-~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      |..+ +.++|++.+.+ .+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  .++++.++|+++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            4555 56889998864 68999999999999999999999999999983   59999999998765  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++|..+.   ++.|. +.+.|.+||+++++
T Consensus        80 ~~~~G~~~~---~~~G~-~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           80 FFRNKVRID---QYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETTEEEE---EEESS-CHHHHHHHHHHHHC
T ss_pred             EEECCeEEE---EEeCC-CHHHHHHHHHHhcC
Confidence            999988764   78884 45669999988753

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.68  E-value=5e-16  Score=132.47  Aligned_cols=152  Identities=24%  Similarity=0.380  Sum_probs=113.9

Q ss_pred             cCCcccccCC--CCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC-C-----chhhhhHHHHHHHHh
Q 021368            5 ETEKISYFAD--GKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS-N-----DSEKLLPVFEEAAKS   76 (313)
Q Consensus         5 ~~~~~~~y~~--g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~-----~c~~~~~~~~~~a~~   76 (313)
                      .|+..+.| +  |+++..+|.+||..+..|+|.++|.+++..++. +.+.+++|+... .     .++.+...++++|++
T Consensus        88 fde~~~~y-~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~  165 (250)
T 3ec3_A           88 YEPRMHVM-DVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYS-KRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKD  165 (250)
T ss_dssp             TSCSCEEE-ECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHSC-SSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTT
T ss_pred             ccccceec-cCCCCCCHHHHHHHHHHcCCCceeecCccchhhhhc-cCccEEEEEecccccccchhHHHHHHHHHHHHHh
Confidence            47888999 8  579999999999999999999999999988774 556666666533 2     245689999999999


Q ss_pred             ccCeEEEEEEeCCCcccccchhhhhCCCCCC-CcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 021368           77 FKGKLIFVYVQMDNEDVGKPVSEYFGITGEA-PKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPI  154 (313)
Q Consensus        77 ~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~-~P~i~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~~~~~~~~~~~s~~~  154 (313)
                      |+ ++.|+++|+.+   +...++.||+.... +|.+++++. ...+|.+. +..+.++|.+|+.+++.|+++++++|+++
T Consensus       166 ~k-ki~F~~~d~~~---~~~~l~~fgl~~~~~~p~~~~~~~-~~~ky~~~~~~~t~~~i~~Fv~~~~~Gkl~p~~kSepi  240 (250)
T 3ec3_A          166 FP-EYTFAIADEED---YATEVKDLGLSESGGDVNAAILDE-SGKKFAMEPEEFDSDALREFVMAFKKGKLKPVIKSQPV  240 (250)
T ss_dssp             CT-TSEEEEEETTT---THHHHHHTTCSSCSCSCEEEEECT-TSCEEECCCCSCCHHHHHHHHHHHHTTCCCCCC-----
T ss_pred             hc-ceeEEEEcHHH---HHHHHHHcCCCccCCCcEEEEEcC-CCceecCCcccCCHHHHHHHHHHHHCCCccceeecCCC
Confidence            99 89999999987   55788999998643 456666653 34577776 67999999999999999999999999999


Q ss_pred             CCCCCCCeE
Q 021368          155 PETNDGDVK  163 (313)
Q Consensus       155 ~~~~~~~v~  163 (313)
                      |+.++++|.
T Consensus       241 Pe~~~~pV~  249 (250)
T 3ec3_A          241 PKNNKGAAA  249 (250)
T ss_dssp             ---------
T ss_pred             CCCCCCCCC
Confidence            998766663

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.68  E-value=2.2e-16  Score=116.02  Aligned_cols=101  Identities=25%  Similarity=0.440  Sum_probs=87.7

Q ss_pred             eEEEcC-cChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          162 VKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l~~-~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      |..++. ++|.+.+.+ .+++++|+||++||++|+.+.+.+.+++..++.  ++.++.+|++.+..  .++++.++|+++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC--CeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            456777 889888864 688999999999999999999999999999864  69999999998765  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|..+.   .+.| .+.+.|.+||++++
T Consensus        80 ~~~~G~~~~---~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           80 FLKNGVKVE---EFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             EEETTEEEE---EEES-CCHHHHHHHHHHTC
T ss_pred             EEcCCcEEE---EEcC-CCHHHHHHHHHHhC
Confidence            999887654   7888 78899999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.68  E-value=2.1e-16  Score=137.51  Aligned_cols=104  Identities=17%  Similarity=0.325  Sum_probs=94.2

Q ss_pred             CCeEEEcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          160 GDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      +.|..++.++|++.+.. .+++++|+||++||++|+.+.|.|.+++..+.+  .+.|+.+|++.+..  ..|+|.++||+
T Consensus         7 ~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             TTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS--SSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            57899999999997753 379999999999999999999999999999986  69999999998865  79999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|++|..+.   .|.|..+.+.+..|+...+
T Consensus        85 ~~~~~G~~~~---~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           85 YLFQNGQPVD---GFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEETTEEEE---EEESCCCHHHHHHHHHHHS
T ss_pred             EEEECCEEEE---EeeCCCCHHHHHHHHHHHc
Confidence            9999887764   7999999999999999986

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.67  E-value=4.6e-16  Score=121.44  Aligned_cols=133  Identities=36%  Similarity=0.631  Sum_probs=106.7

Q ss_pred             HHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhh
Q 021368           24 DFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYF  101 (313)
Q Consensus        24 ~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~  101 (313)
                      +-|..++.|+|.++|.++...++..+.+..+++|...  ...+.+.+.++++|.+|+|++.|+.+|.+... +..+++.|
T Consensus         6 ~~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~-~~~~l~~f   84 (147)
T 3bj5_A            6 HHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTD-NQRILEFF   84 (147)
T ss_dssp             ---------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGG-GHHHHHHT
T ss_pred             cchhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHh-HHHHHHHc
Confidence            3567889999999999999999988877777766653  55788999999999999999999999985433 56788999


Q ss_pred             CCCCCCCcEEEEEcC-CCCceeccC-CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 021368          102 GITGEAPKVLAYTGN-DDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPET  157 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~-~~~~~~~~~-g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~  157 (313)
                      |+.....|+++++.. +...+|.+. +..+.+.|.+|+.+++.|+++++++|+++|+.
T Consensus        85 Gl~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~p~~KSEpiPe~  142 (147)
T 3bj5_A           85 GLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED  142 (147)
T ss_dssp             TCCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSCEEECCSCCCGG
T ss_pred             CCCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCccccccCCCCCCC
Confidence            999755699999875 445577765 78999999999999999999999999999987

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.67  E-value=1.6e-16  Score=131.92  Aligned_cols=109  Identities=20%  Similarity=0.464  Sum_probs=96.7

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      ...|..+++++|...+ ..+++++|+||++||++|+.+.|.|.+++..+.+  .+.|+.+|++.+..  ..+++.++|++
T Consensus        96 ~~~v~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~  172 (210)
T 3apq_A           96 DPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPSL  172 (210)
T ss_dssp             CTTSEECCHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCceEEecHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC--ceEEEEEECCccHHHHHHcCCCcCCeE
Confidence            4568899999999988 5689999999999999999999999999999976  69999999998875  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCcc
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  273 (313)
                      ++|++|..+.   .+.|..+.+.|.+||.++++..+.
T Consensus       173 ~~~~~G~~~~---~~~G~~~~~~l~~~i~~~l~~~~~  206 (210)
T 3apq_A          173 FIFRSGMAAV---KYNGDRSKESLVAFAMQHVRSTVT  206 (210)
T ss_dssp             EEECTTSCCE---ECCSCCCHHHHHHHHHHHHHCCSS
T ss_pred             EEEECCCcee---EecCCCCHHHHHHHHHHhCcccce
Confidence            9998888654   899999999999999998765443

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.66  E-value=3.1e-16  Score=119.29  Aligned_cols=100  Identities=23%  Similarity=0.326  Sum_probs=88.9

Q ss_pred             CeEEEcC-cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          161 DVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       161 ~v~~l~~-~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      -|..++. ++|++.+ ..+++++|+||++||++|+.+.+.|.+++..+.   ++.|+.+|++.+..  ..|++.++|+++
T Consensus        20 mv~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   95 (125)
T 1r26_A           20 SVVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFI   95 (125)
T ss_dssp             CCEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            4788999 9999988 678999999999999999999999999999984   59999999998775  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|..+.   .+.| .+.+.|.+||.+.+
T Consensus        96 i~~~G~~~~---~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           96 IARSGKMLG---HVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             EEETTEEEE---EEES-SCHHHHHHHHHHHH
T ss_pred             EEeCCeEEE---EEeC-CCHHHHHHHHHHHh
Confidence            999888764   7888 68899999998875

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.66  E-value=1.9e-16  Score=122.82  Aligned_cols=104  Identities=21%  Similarity=0.349  Sum_probs=78.9

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.|..++.++|.+.+...++ ++|+||++||++|+.+.+.|.+++..+.+  ++.|+.+|++.+..  ..|++.++|+++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  109 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHPGLAARYGVRSVPTLV  109 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHCCCCccCEEE
Confidence            55778999999998876666 99999999999999999999999999976  69999999998765  689999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++|..+.   .+.|..+.+.|.+||.+.++
T Consensus       110 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          110 LFRRGAPVA---TWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHHT
T ss_pred             EEeCCcEEE---EEeCCCCHHHHHHHHHHHHc
Confidence            999887654   78899999999999998764

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.66  E-value=2.5e-15  Score=136.08  Aligned_cols=229  Identities=15%  Similarity=0.117  Sum_probs=159.3

Q ss_pred             ccCCCCCCHHHHHHHHHhcCCCceEEeCC-CcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCC
Q 021368           11 YFADGKFDKSTIADFVFSNKLPLVTIFTR-ENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMD   89 (313)
Q Consensus        11 ~y~~g~~~~~~l~~fi~~~~~~~v~~lt~-~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~   89 (313)
                      .| .|..+...|..||.....+.+..++. ++++. +.....++|.||.++  +....+.|.++|..+.+.+.|+...+ 
T Consensus        98 ~~-~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~--~~~~~~~f~~~A~~~~~~~~F~~~~~-  172 (382)
T 2r2j_A           98 EY-RGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQK--DSDNYRVFERVANILHDDCAFLSAFG-  172 (382)
T ss_dssp             EC-CSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCS--SSHHHHHHHHHHHHHTTTCEEEEEES-
T ss_pred             ee-cCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCC--CChhHHHHHHHHHHhhccceEEEEeh-
Confidence            69 99999999999999988888888864 46776 455556778888775  33457789999999998888888876 


Q ss_pred             CcccccchhhhhCCCCCCCcEEEEEcCCC-CceeccCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcC
Q 021368           90 NEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHILDGEL-TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG  167 (313)
Q Consensus        90 ~~~~~~~l~~~~~v~~~~~P~i~~~~~~~-~~~~~~~g~~-~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~  167 (313)
                            .+++.+++.++  | +++...+. .....|.|.+ +.++|.+||.+...                 +.|..++.
T Consensus       173 ------~~~~~~~v~~~--p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~-----------------p~v~elt~  226 (382)
T 2r2j_A          173 ------DVSKPERYSGD--N-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV-----------------PLVREITF  226 (382)
T ss_dssp             ------CC--------C--E-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS-----------------CSSEECCH
T ss_pred             ------hhHHhhCCCCC--c-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhccc-----------------CceEecCh
Confidence                  24677899877  8 66665532 3457789988 99999999998753                 45788999


Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCc-cchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC--cCceEEEEeCC
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--GFPTILFFPAG  242 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~--~~P~i~~~~~g  242 (313)
                      +++.+++ ..+.+++|.|+.++|. .|..+...+.+++..+++  .+.|+.+|++.+..  ..+++.  .+|++.++..+
T Consensus       227 ~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~--~i~f~~id~~~~~~~~~~~gl~~~~~P~i~i~~~~  303 (382)
T 2r2j_A          227 ENGEELT-EEGLPFLILFHMKEDTESLEIFQNEVARQLISEKG--TINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFR  303 (382)
T ss_dssp             HHHHHHH-TTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTT--TSEEEEEETTTTHHHHHHTTCCGGGCSEEEEECSS
T ss_pred             hhHHHHh-cCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCC--eeEEEEEchHHhHHHHHHcCCCccCCCEEEEEcch
Confidence            9998865 5678899999999874 355565666666666665  79999999997764  577776  78999887654


Q ss_pred             CCCcCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021368          243 NKSFDPINVDVDRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       243 ~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      ... ..-.+.+..+.+.|.+|+++.+.-+++.
T Consensus       304 ~~y-~~~~~~~~~~~~~i~~F~~d~~~Gkl~p  334 (382)
T 2r2j_A          304 HMY-VFGDFKDVLIPGKLKQFVFDLHSGKLHR  334 (382)
T ss_dssp             CEE-ECCCSGGGGSTTHHHHHHHHHHHTTTSS
T ss_pred             hcC-CCCccccccCHHHHHHHHHHHHCCCccc
Confidence            321 1112344556788999999998766644

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.66  E-value=2.5e-16  Score=119.06  Aligned_cols=104  Identities=21%  Similarity=0.349  Sum_probs=91.0

Q ss_pred             CCCeEEEcCcChHHHhhc---CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          159 DGDVKIVVGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~---~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      ...+..++.++|.+.+..   .+++++|+||++||++|+.+.+.|.+++..+.+   +.++.+|++.+..  .+|++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~   88 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAM   88 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---cEEEEEECCCCHHHHHHcCCCcc
Confidence            345677888999998866   689999999999999999999999999998864   8999999998765  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      |++++|++|+.+.   ++.|.. .+.|.+||.+++.
T Consensus        89 Pt~~~~~~G~~~~---~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           89 PTFLFMKEGDVKD---RVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SEEEEEETTEEEE---EEESSC-HHHHHHHHHHHHS
T ss_pred             cEEEEEeCCEEEE---EEeCcC-HHHHHHHHHHHhc
Confidence            9999999888754   788977 9999999998764

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.66  E-value=5.7e-16  Score=132.34  Aligned_cols=153  Identities=24%  Similarity=0.369  Sum_probs=114.5

Q ss_pred             cCCcccccCCCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC-C-c---hhhhhHHHHHHHHhccC
Q 021368            5 ETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS-N-D---SEKLLPVFEEAAKSFKG   79 (313)
Q Consensus         5 ~~~~~~~y~~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~-~---c~~~~~~~~~~a~~~~~   79 (313)
                      .++....|..|+++..+|.+||..+..|+|.++|.+++..+...  +.++.|+... . .   .+.+...+.++|.+|.+
T Consensus        87 f~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~  164 (252)
T 2h8l_A           87 FEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK--DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLD  164 (252)
T ss_dssp             TSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHSSS--SEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhcCC--CeEEEEeecchhhcchhHHHHHHHHHHHHHHccc
Confidence            46777777457899999999999999999999999999987543  5566666543 2 1   23688899999999998


Q ss_pred             e---EEEEEEeCCCcccccchhhhhCC--CCCCCcEEEEEcCCCCceeccCCCCCHHH--HHHHHHHHhcCCCCCCCCCC
Q 021368           80 K---LIFVYVQMDNEDVGKPVSEYFGI--TGEAPKVLAYTGNDDAKKHILDGELTLDK--IKTFGEDFLEGKLKPFFKSD  152 (313)
Q Consensus        80 ~---v~f~~vd~~~~~~~~~l~~~~~v--~~~~~P~i~~~~~~~~~~~~~~g~~~~~~--i~~fi~~~~~~~~~~~~~s~  152 (313)
                      +   +.|+++|++.   ...+++.||+  .....|.+++++.. ..+|.+.+..+.+.  |.+|+.+++.|+++++++|+
T Consensus       165 k~~~~~F~~~d~~~---~~~~~~~fgl~~~~~~~P~v~i~~~~-~~ky~~~~~~t~~~~~i~~F~~~~~~Gkl~~~~kSe  240 (252)
T 2h8l_A          165 AGHKLNFAVASRKT---FSHELSDFGLESTAGEIPVVAIRTAK-GEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSE  240 (252)
T ss_dssp             TTCCCEEEEEETTT---THHHHGGGTCCCCSCSSCEEEEECTT-SCEEECCSCCCTTSHHHHHHHHHHHHTCSCCCC---
T ss_pred             cCceEEEEEEchHH---HHHHHHHcCCCCccCCCCEEEEEeCc-CcEecCCcccCcchHHHHHHHHHHHCCCccccccCC
Confidence            7   9999999987   5578999999  44556999998653 45777888889899  99999999999999999999


Q ss_pred             CCCCCCCCCeE
Q 021368          153 PIPETNDGDVK  163 (313)
Q Consensus       153 ~~~~~~~~~v~  163 (313)
                      ++|+.++++|+
T Consensus       241 ~iPe~~~~pV~  251 (252)
T 2h8l_A          241 PIPESNDGAAA  251 (252)
T ss_dssp             -----------
T ss_pred             CCCCCCCCCCC
Confidence            99998766664

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.66  E-value=2.9e-16  Score=116.38  Aligned_cols=99  Identities=23%  Similarity=0.474  Sum_probs=85.5

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      ....+.++|++.+ ..+++++|+||++||++|+.+.+.+.+++..+.+   +.++.+|++.+..  ..+++.++|++++|
T Consensus         9 ~~~~~~~~f~~~~-~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~---~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   84 (109)
T 3f3q_A            9 TQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ---ADFYKLDVDELGDVAQKNEVSAMPTLLLF   84 (109)
T ss_dssp             EECCSHHHHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cCCCCHHHHHHHH-hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            4456778888877 4689999999999999999999999999999854   8999999998765  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|+.+.   ++.|. +.+.|.++|++++
T Consensus        85 ~~G~~~~---~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           85 KNGKEVA---KVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             ETTEEEE---EEESS-CHHHHHHHHHHHC
T ss_pred             ECCEEEE---EEeCC-CHHHHHHHHHhhC
Confidence            9887764   78886 7799999998764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.66  E-value=1.9e-16  Score=117.65  Aligned_cols=103  Identities=20%  Similarity=0.430  Sum_probs=88.8

Q ss_pred             CeEEE-cCcChHHHhhc-C--CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCc
Q 021368          161 DVKIV-VGNNFDEIVLD-E--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       161 ~v~~l-~~~~f~~~l~~-~--~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      .|..+ +.++|++.+.. .  +++++|+||++||++|+.+.+.|.+++..+.+  ++.++.+|++.+..  ..+++.++|
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchHHHHHHcCCCccc
Confidence            46777 45889988854 3  78999999999999999999999999999876  69999999998765  789999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++++|++|..+.   .+.|. +.+.|.+||++++.
T Consensus        81 t~~~~~~G~~~~---~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYKDGVKAD---DLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTEEEE---EEESC-CHHHHHHHHHHHHC
T ss_pred             EEEEEECCeEEE---EEcCC-CHHHHHHHHHHHhc
Confidence            999999888754   78887 89999999998753

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.65  E-value=2.9e-16  Score=123.19  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=87.5

Q ss_pred             EcCcChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeC
Q 021368          165 VVGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA  241 (313)
Q Consensus       165 l~~~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~  241 (313)
                      .+.++|++.+. ..+++++|+||++||++|+.+.|.+.+++..+.+  .+.++.+|++.+..  ..|+|.++|++++|++
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~   86 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN   86 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT--TEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence            46678998886 5689999999999999999999999999998866  59999999988876  7899999999999999


Q ss_pred             CCCC---------cCceeecc-CcCHHHHHHHHHhcC
Q 021368          242 GNKS---------FDPINVDV-DRTVVALYKFLKKNA  268 (313)
Q Consensus       242 g~~~---------~~~~~y~g-~~~~~~l~~fi~~~~  268 (313)
                      |+.+         .   ++.| ..+.+.|.++|+...
T Consensus        87 G~~v~~~~g~~~~~---~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           87 GQHMKVDYGSPDHT---KFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             TEEEEEECSSSCCS---CEESCCSSHHHHHHHHHHHH
T ss_pred             CeEEEeecCCCCCC---eEeeecCCHHHHHHHHHHHH
Confidence            9876         4   7888 889999999998874

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.4e-16  Score=116.42  Aligned_cols=102  Identities=12%  Similarity=0.237  Sum_probs=84.0

Q ss_pred             eEEEcC-cChHHHhh--cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          162 VKIVVG-NNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       162 v~~l~~-~~f~~~l~--~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      |..++. ++|++.+.  ..+++++|+||++||++|+.+.+.+.+++..++.. ++.++.+|++.+..  .++++.++|++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNS-NVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGT-TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCC-CEEEEEEecccCHHHHHHcCCCcccEE
Confidence            667887 89999885  34789999999999999999999999999986432 59999999998775  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|++|+.+.   ++.|. ....|.++|.+.+
T Consensus        81 ~~~~~G~~~~---~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           81 IIIHKGTILK---ELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEETTEEEE---EECSC-CHHHHHHHHHHHH
T ss_pred             EEEECCEEEE---EecCC-CHHHHHHHHHHHH
Confidence            9999888764   77886 4556999998764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.65  E-value=7e-16  Score=116.94  Aligned_cols=103  Identities=25%  Similarity=0.432  Sum_probs=88.2

Q ss_pred             CCCeEEEcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-ccc--ccCCCCcCc
Q 021368          159 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~--~~~~v~~~P  234 (313)
                      .+.|..++.++|.+.+.. .+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++. +..  .++++.++|
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~v~~~P   93 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP   93 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcchHHHHHHcCCCeee
Confidence            366899999999998864 67899999999999999999999999999886   38999999983 433  689999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++++|++|+.+.   ++.|.. .+.|.++|++.+
T Consensus        94 t~~~~~~G~~~~---~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           94 TFKILKENSVVG---EVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             EEEEEETTEEEE---EEESSC-HHHHHHHHHHHT
T ss_pred             EEEEEeCCcEEE---EEcCCC-HHHHHHHHHHhh
Confidence            999999988764   677864 889999998764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.65  E-value=3.8e-16  Score=117.20  Aligned_cols=100  Identities=19%  Similarity=0.449  Sum_probs=86.8

Q ss_pred             CeEEEcC-cChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          161 DVKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       161 ~v~~l~~-~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      .|..++. ++|.+.+.+ .+++++|+||++||++|+.+.+.+.+++..+    ++.++.+|++.+..  .++++.++|++
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccceE
Confidence            3778887 899998864 6789999999999999999999999998876    58999999998765  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|++|+.+.   .+.| .+.+.|.++|++++
T Consensus        90 ~~~~~G~~~~---~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           90 IAIKNGEKVG---DVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEETTEEEE---EEES-SCHHHHHHHHHHHC
T ss_pred             EEEeCCcEEE---EEeC-CCHHHHHHHHHHhC
Confidence            9999888764   7788 68889999998764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.65  E-value=3.7e-16  Score=116.37  Aligned_cols=102  Identities=22%  Similarity=0.425  Sum_probs=89.4

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      ++....++.++|++.+ +.+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  .++++.++|++
T Consensus         8 ~~~~~~~~~~~f~~~~-~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A            8 HMVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             -CCEEECSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             eeEEEECCHHHHHHHH-ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            3557788999999988 478999999999999999999999999999875   48999999998765  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|++|..+.   .+.|. +.+.|.+||++.+
T Consensus        84 ~~~~~G~~~~---~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           84 KVYKNGSSVD---TLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEEETTEEEE---EEESC-CHHHHHHHHHTTC
T ss_pred             EEEECCcEEE---EEeCC-CHHHHHHHHHHhh
Confidence            9999887754   78888 9999999998865

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.65  E-value=6.4e-16  Score=113.08  Aligned_cols=99  Identities=19%  Similarity=0.497  Sum_probs=85.0

Q ss_pred             EEEcC-cChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          163 KIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       163 ~~l~~-~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      ..++. ++|++.+.+ .+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  ..+++.++|++++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            45666 788888754 67899999999999999999999999999875   58999999998765  7899999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      |++|..+.   .+.| .+.+.|.+||++++
T Consensus        79 ~~~g~~~~---~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           79 IKDGKEVD---RFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EETTEEEE---EEES-SCHHHHHHHHHHHC
T ss_pred             EeCCcEEE---EEeC-CCHHHHHHHHHhhC
Confidence            99887654   7788 68899999998764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.64  E-value=9.2e-16  Score=116.89  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=92.5

Q ss_pred             CCCceEEeCCCccccccc-CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc-----CeEEEEEEeCCCcccccchhhhhC
Q 021368           30 KLPLVTIFTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-----GKLIFVYVQMDNEDVGKPVSEYFG  102 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~-~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-----~~v~f~~vd~~~~~~~~~l~~~~~  102 (313)
                      ..+.|..|+.++|+..+. .+..++|.||++| ++|+.+.|.|.++|..+.     +.+.|+.|||++   ++.+|++|+
T Consensus        13 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~   89 (127)
T 3h79_A           13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK---YPDVIERMR   89 (127)
T ss_dssp             CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT---CHHHHHHTT
T ss_pred             CCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc---cHhHHHhcC
Confidence            355789999999999874 5778889999999 999999999999998764     469999999998   679999999


Q ss_pred             CCCCCCcEEEEEcCCCC-ceeccCCCCCHHHHHHHHHHH
Q 021368          103 ITGEAPKVLAYTGNDDA-KKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~-~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      |.++  |++++|..+.. .+..|.|.++.+.|.+|+.+.
T Consensus        90 v~~~--Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           90 VSGF--PTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             CCSS--SEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CccC--CEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            9999  99999987764 346789999999999999874

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.64  E-value=2.7e-16  Score=120.06  Aligned_cols=89  Identities=24%  Similarity=0.347  Sum_probs=79.8

Q ss_pred             hhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceee
Q 021368          174 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINV  251 (313)
Q Consensus       174 l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y  251 (313)
                      ....+++++|+||++||++|+.+.+.+.+++..+++  ++.++.+|++.+..  .++++.++|++++|++|+.+.   ++
T Consensus        38 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~---~~  112 (128)
T 3ul3_B           38 VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLA---RK  112 (128)
T ss_dssp             TTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG--GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEE---EE
T ss_pred             HHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEE---Ee
Confidence            445789999999999999999999999999999985  79999999998866  789999999999998887654   88


Q ss_pred             ccCcCHHHHHHHHHhc
Q 021368          252 DVDRTVVALYKFLKKN  267 (313)
Q Consensus       252 ~g~~~~~~l~~fi~~~  267 (313)
                      .|..+.+.|.+||+++
T Consensus       113 ~G~~~~~~l~~~l~~~  128 (128)
T 3ul3_B          113 DHFVSSNDLIALIKKH  128 (128)
T ss_dssp             SSCCCHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHhC
Confidence            9999999999999764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.64  E-value=1e-15  Score=116.19  Aligned_cols=103  Identities=22%  Similarity=0.390  Sum_probs=88.8

Q ss_pred             CCCeEEE-cCcChHHHhhc---CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc
Q 021368          159 DGDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  232 (313)
Q Consensus       159 ~~~v~~l-~~~~f~~~l~~---~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~  232 (313)
                      ...|..+ +.++|++.+..   .+++++|+||++||++|+.+.+.|.+++..+.   ++.++.+|++.+..  ..|++.+
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~   91 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   91 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCCc
Confidence            3557777 66889888864   58899999999999999999999999999885   59999999998765  7899999


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++++|++|..+.   ++.| .+.+.|.++|.+.+
T Consensus        92 ~Pt~~~~~~G~~~~---~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           92 MPTFMFLKEGKILD---KVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SSEEEEEETTEEEE---EEES-CCHHHHHHHHHHHC
T ss_pred             cCEEEEEECCEEEE---EEeC-CCHHHHHHHHHHhc
Confidence            99999999888764   6778 58899999998875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.64  E-value=8.6e-16  Score=112.66  Aligned_cols=96  Identities=20%  Similarity=0.409  Sum_probs=83.5

Q ss_pred             cCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCC
Q 021368          166 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  242 (313)
Q Consensus       166 ~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g  242 (313)
                      +.++|++.+.. .+++++|+||++||++|+.+.+.+.+++..+.+   +.++.+|++.+..  ..+++.++|++++|++|
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   83 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASESEVKSMPTFQFFKKG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT---SEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC---eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECC
Confidence            45677777743 578999999999999999999999999998864   8999999998865  78999999999999988


Q ss_pred             CCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          243 NKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       243 ~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +.+.   .+.|. +.+.|.+||++++
T Consensus        84 ~~~~---~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           84 QKVG---EFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEE---EEESS-CHHHHHHHHHHHC
T ss_pred             eEEE---EEeCC-CHHHHHHHHHHhC
Confidence            8764   78888 9999999998764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.63  E-value=1.6e-15  Score=128.95  Aligned_cols=112  Identities=26%  Similarity=0.444  Sum_probs=93.9

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC-CCcEEEEEEeCCC--ccc--ccCCCCcC
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTT--NEH--HRAKSDGF  233 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~vd~~~--~~~--~~~~v~~~  233 (313)
                      .+.|..++.++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+.+ ...+.++.+||+.  +..  .+|+|.++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            467999999999999988889999999999999999999999999999975 2369999999954  333  78999999


Q ss_pred             ceEEEEeCCCCCc--CceeeccCcCHHHHHHHHHhcCCCC
Q 021368          234 PTILFFPAGNKSF--DPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       234 P~i~~~~~g~~~~--~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      |++++|.+|....  ..+.+.| .+.+.|.+||.+.+...
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~  129 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESH  129 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTC
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhc
Confidence            9999999876642  2234555 69999999999987543

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=7.1e-17  Score=124.82  Aligned_cols=103  Identities=20%  Similarity=0.373  Sum_probs=85.8

Q ss_pred             CCCeEEEcCcChHHHhhcCC-CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC----
Q 021368          159 DGDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD----  231 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~-k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~----  231 (313)
                      .+.|..++.++|++.+.... ++++|+||++||++|+.+.|.|.+++..+.+. ++.|+.+|++.+..  .+|++.    
T Consensus         6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~~~   84 (137)
T 2dj0_A            6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYTDVSTRYKVSTSPL   84 (137)
T ss_dssp             CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSS-SCEEEECCTTTCHHHHHHTTCCCCSS
T ss_pred             CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCccCHHHHHHccCcccCC
Confidence            35688999999999886554 48999999999999999999999999999742 69999999998765  789998    


Q ss_pred             --cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHH
Q 021368          232 --GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK  265 (313)
Q Consensus       232 --~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~  265 (313)
                        ++|++++|++|+.+.   ++.|..+.+.|.+||.
T Consensus        85 ~~~~Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           85 TKQLPTLILFQGGKEAM---RRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             SSCSSEEEEESSSSEEE---EESCBCSSSCBCCCCC
T ss_pred             cCCCCEEEEEECCEEEE---EecCcCchHHHHHHHh
Confidence              999999998888764   6778666555555553

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.63  E-value=1.8e-16  Score=133.80  Aligned_cols=134  Identities=18%  Similarity=0.231  Sum_probs=100.7

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCCCCeEEE-cCcChHHHhhc--CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCC
Q 021368          135 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIV-VGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD  211 (313)
Q Consensus       135 ~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l-~~~~f~~~l~~--~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~  211 (313)
                      .|+.++..+++....++.. +....+.|..| +.++|.+.+.+  .+++++|+||++||++|+.+.|.|.+++..+.+  
T Consensus        88 ~fL~~~r~~Rl~el~~~~~-~~~~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~--  164 (245)
T 1a0r_P           88 NCLRKYRRQCMQDMHQKLS-FGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM--  164 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CCCCCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHHHHHHHHHhh-ccCCCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC--
Confidence            4566655555555443322 23345778888 78999998864  378999999999999999999999999999863  


Q ss_pred             cEEEEEEeCCCccc-ccCCCCcCceEEEEeCCCCCcCceeec---c-CcCHHHHHHHHHhcCCCCc
Q 021368          212 SIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       212 ~v~~~~vd~~~~~~-~~~~v~~~P~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~~~  272 (313)
                       +.|+.+|++.... ..|+|.++||+++|++|..+...+.+.   | ..+.+.|..||.++..++.
T Consensus       165 -v~f~kVd~d~~~l~~~~~I~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~l~~  229 (245)
T 1a0r_P          165 -VKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPE  229 (245)
T ss_dssp             -SEEEEEEHHHHCCTTSSCTTTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTCSCC
T ss_pred             -CEEEEEeCCcHHHHHHCCCCCCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcCCCCC
Confidence             8999999876333 689999999999999998765223332   1 1467889999999865433

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.63  E-value=1e-16  Score=133.53  Aligned_cols=128  Identities=19%  Similarity=0.250  Sum_probs=101.0

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEE-cCcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCC
Q 021368          134 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIV-VGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV  210 (313)
Q Consensus       134 ~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l-~~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~  210 (313)
                      ..|+.++..+++.....+.. +....+.|..+ +.++|.+.+.+..  ++++|+||++||++|+.+.+.|..++..+.  
T Consensus        74 ~~fl~~~r~~Rl~el~~~~~-~~~~~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--  150 (217)
T 2trc_P           74 EGCLRKYRRQCMQDMHQKLS-FGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--  150 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-CCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--
Confidence            45777776666655443322 33345778888 8899999886554  899999999999999999999999999874  


Q ss_pred             CcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcC-------HHHHHHHHHhcCC
Q 021368          211 DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRT-------VVALYKFLKKNAS  269 (313)
Q Consensus       211 ~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~-------~~~l~~fi~~~~~  269 (313)
                       .+.|+.+|++ +..  ..|++.++||+++|++|..+.   .+.|..+       .+.|.+||.++..
T Consensus       151 -~v~f~~vd~~-~~~l~~~~~i~~~PTl~~~~~G~~v~---~~~G~~~~~g~~~~~~~Le~~L~~~g~  213 (217)
T 2trc_P          151 -MVKFCKIRAS-NTGAGDRFSSDVLPTLLVYKGGELIS---NFISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             -TSEEEEEEHH-HHTCSTTSCGGGCSEEEEEETTEEEE---EETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             -CeEEEEEECC-cHHHHHHCCCCCCCEEEEEECCEEEE---EEeCCcccCcccCCHHHHHHHHHHcCC
Confidence             5899999998 432  689999999999999988764   6777544       4899999998754

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.63  E-value=2.2e-15  Score=118.66  Aligned_cols=106  Identities=23%  Similarity=0.379  Sum_probs=89.7

Q ss_pred             CCeEEEc-CcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          160 GDVKIVV-GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       160 ~~v~~l~-~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      +.+..++ .++|.+.+.+. +++++|+||++||++|+.+.+.|.+++..+.   ++.|+.+|++.+..  .+|++.++|+
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt   88 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVPEVSEKYEISSVPT   88 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCHHHHHHcCCCCCCE
Confidence            5577787 48888877543 7899999999999999999999999999873   59999999998875  7899999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      +++|.+|+.+.   .+.| .+.+.|.+||.+.++...
T Consensus        89 ~~~~~~G~~~~---~~~G-~~~~~l~~~i~~~l~~~~  121 (153)
T 2wz9_A           89 FLFFKNSQKID---RLDG-AHAPELTKKVQRHASSGS  121 (153)
T ss_dssp             EEEEETTEEEE---EEES-SCHHHHHHHHHHHSCTTS
T ss_pred             EEEEECCEEEE---EEeC-CCHHHHHHHHHHHhcccc
Confidence            99999877653   6777 577889999999986543

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.63  E-value=5.1e-16  Score=116.07  Aligned_cols=100  Identities=18%  Similarity=0.335  Sum_probs=82.6

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      +.+..++..+..+.+...+++++|+||++||++|+.+.+.+.+++..+.+   +.++.+|++.+..  .++++.++|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~~~vd~~~~~~l~~~~~v~~~Pt~~   88 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESPDIAKECEVTAMPTFV   88 (114)
T ss_dssp             GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHCCCCcccEEE
Confidence            34455555444443446789999999999999999999999999998864   8999999998765  789999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      +|++|+.+.   ++.|.. .+.|.+||++
T Consensus        89 ~~~~G~~~~---~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LGKDGQLIG---KIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEETTEEEE---EEESSC-HHHHHHHHHT
T ss_pred             EEeCCeEEE---EEeCCC-HHHHHHHHHh
Confidence            999888764   788877 8999999975

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.62  E-value=8e-16  Score=114.21  Aligned_cols=101  Identities=14%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      +..++.++| +.+ ..+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  .++++.++|++++|
T Consensus         5 ~~~~~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   79 (110)
T 2l6c_A            5 RDITTEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARPELMKELGFERVPTLVFI   79 (110)
T ss_dssp             SBCGGGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             eecCCHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCHHHHHHcCCcccCEEEEE
Confidence            345778899 655 357899999999999999999999999998764   58899999987765  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      ++|+.+.   ++.|..+.+.|.+++.+..+.
T Consensus        80 ~~G~~v~---~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           80 RDGKVAK---VFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             ESSSEEE---EEESCCCHHHHHHHHHTC---
T ss_pred             ECCEEEE---EEcCCCCHHHHHHHHHHHhhh
Confidence            9888765   888989999999999988653

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.61  E-value=2.7e-15  Score=119.92  Aligned_cols=116  Identities=13%  Similarity=0.072  Sum_probs=96.4

Q ss_pred             HHHHHhcCCCceEEeCCCcccccccCC--CccEEEEEe-------eC-CchhhhhHHHHHHHHhcc-----CeEEEEEEe
Q 021368           23 ADFVFSNKLPLVTIFTRENAPSVFESP--IKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFK-----GKLIFVYVQ   87 (313)
Q Consensus        23 ~~fi~~~~~~~v~~lt~~~~~~~~~~~--~~~~v~f~~-------~~-~~c~~~~~~~~~~a~~~~-----~~v~f~~vd   87 (313)
                      .+++.....+.|.+||+++|++++..+  ..++|.|++       .| ++|+.+.|+|+++|.++.     +++.|+.||
T Consensus         9 ~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD   88 (178)
T 3ga4_A            9 DDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVD   88 (178)
T ss_dssp             HHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred             HHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEE
Confidence            345555556789999999999987543  346777888       48 999999999999999998     889999999


Q ss_pred             CCCcccccchhhhhCCCCCCCcEEEEEcCCCCce-----------ecc--C-C-CCCHHHHHHHHHHHhcC
Q 021368           88 MDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK-----------HIL--D-G-ELTLDKIKTFGEDFLEG  143 (313)
Q Consensus        88 ~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~-----------~~~--~-g-~~~~~~i~~fi~~~~~~  143 (313)
                      +++   ++.++++|||++.  |++++|.+|....           +.|  . | .++++.|.+||.+.++-
T Consensus        89 ~d~---~~~la~~~~I~si--Ptl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~  154 (178)
T 3ga4_A           89 VNE---VPQLVKDLKLQNV--PHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI  154 (178)
T ss_dssp             TTT---CHHHHHHTTCCSS--CEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred             Ccc---CHHHHHHcCCCCC--CEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence            998   7899999999999  9999999886433           334  2 4 79999999999998873

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.60  E-value=1.4e-15  Score=114.82  Aligned_cols=103  Identities=22%  Similarity=0.502  Sum_probs=88.0

Q ss_pred             CCeEEEcC-cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          160 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~-~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      ..+..++. ++|++.+ ..+++++|+||++||++|+.+.+.|.+++..+.+. ++.++.+|++.+..  ..+++.++|++
T Consensus        15 ~~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~   92 (121)
T 2j23_A           15 GSVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTF   92 (121)
T ss_dssp             CCEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             cceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEE
Confidence            45666666 7888877 67899999999999999999999999999877652 38999999998765  78999999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|++|..+.   .+.|. +.+.|.+||.+.+
T Consensus        93 ~~~~~G~~~~---~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           93 VFFKNGQKID---TVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEETTEEEE---EEESS-CHHHHHHHHHHHT
T ss_pred             EEEECCeEEe---eEcCC-CHHHHHHHHHHhh
Confidence            9999887654   78887 9999999999875

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.60  E-value=5.1e-16  Score=120.55  Aligned_cols=105  Identities=14%  Similarity=0.136  Sum_probs=75.8

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCC--CccchhhhHHHHHHHHHhcCCCcEE--EEEEeCCCccc--ccCCCCcCc
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIV--IAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~--C~~C~~~~~~~~~la~~~~~~~~v~--~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      .+..++.++|++.+. ..+.++|+|++.|  |++|+.+.|.|.+++..+ +  .+.  |+.+|++.+..  .+|+|.++|
T Consensus        18 ~~~~l~~~~f~~~i~-~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~--~v~~~~~~Vd~d~~~~la~~~~V~~iP   93 (142)
T 2es7_A           18 GWQPVEASTVDDWIK-RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P--QFDWQVAVADLEQSEAIGDRFNVRRFP   93 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T--TSCCEEEEECHHHHHHHHHTTTCCSSS
T ss_pred             cCcccccccHHHHHH-hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c--ccceeEEEEECCCCHHHHHhcCCCcCC
Confidence            467889999999885 4556888999877  999999999999999988 4  577  99999998765  789999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCc
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      |+++|++|+.+.   ++.|..+.+.|.+||++.+..+.
T Consensus        94 T~~~fk~G~~v~---~~~G~~~~~~l~~~i~~~l~~~~  128 (142)
T 2es7_A           94 ATLVFTDGKLRG---ALSGIHPWAELLTLMRSIVDTPA  128 (142)
T ss_dssp             EEEEESCC-------CEESCCCHHHHHHHHHHHHC---
T ss_pred             eEEEEeCCEEEE---EEeCCCCHHHHHHHHHHHhcccc
Confidence            999999998765   89999999999999999875433

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.60  E-value=3e-15  Score=116.39  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=82.7

Q ss_pred             cCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCC
Q 021368          166 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  242 (313)
Q Consensus       166 ~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g  242 (313)
                      +.++|++.+.+ .+++++|+||++||++|+.+.|.+.+++..+.+  .+.++.+|++.+..  .+|++.++|++++|++|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            45788877765 689999999999999999999999999999976  69999999998875  78999999999999988


Q ss_pred             CCCcC------ceeeccCc-CHHHHHHHHHhcC
Q 021368          243 NKSFD------PINVDVDR-TVVALYKFLKKNA  268 (313)
Q Consensus       243 ~~~~~------~~~y~g~~-~~~~l~~fi~~~~  268 (313)
                      ..+..      ...+.|.. +.+.|.++|.+.+
T Consensus        88 ~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           88 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence            76520      01245544 4888999998875

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.60  E-value=3.3e-16  Score=120.79  Aligned_cols=103  Identities=17%  Similarity=0.289  Sum_probs=86.7

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC---------CCccc--cc
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG---------TTNEH--HR  227 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~---------~~~~~--~~  227 (313)
                      .+.+..++.++|.+.+..   +++|+||++||++|+.+.|.|.+++..+.    +.|+.+|+         +.+..  .+
T Consensus        15 ~~~v~~l~~~~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~~~~d~~~~l~~~   87 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGERELSAARLEMNK   87 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS---SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cCceeecCHHHHHHHhCC---cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhhhhhhhhHHHHHH
Confidence            356888999999998843   99999999999999999999999998764    78888888         33333  58


Q ss_pred             CCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          228 AKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       228 ~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      |++.++|++++|++|+.+.   ++.|..+.+.+.+++++.+...
T Consensus        88 ~~v~~~Pt~~~~~~G~~v~---~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           88 AGVEGTPTLVFYKEGRIVD---KLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             HTCCSSSEEEEEETTEEEE---EEESCCCHHHHHHHHHHHC---
T ss_pred             cCCceeCeEEEEcCCEEEE---EEeCCCCHHHHHHHHHHHhCCC
Confidence            9999999999999888765   8999999999999999987543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.60  E-value=1.7e-15  Score=113.93  Aligned_cols=104  Identities=15%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             CeEEE--cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceE
Q 021368          161 DVKIV--VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI  236 (313)
Q Consensus       161 ~v~~l--~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i  236 (313)
                      .|..+  +..+|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+ .  ++.|+.+|++.+..  ..|++.++|++
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~--~v~~~~vd~~~~~~~~~~~~i~~~Pt~   80 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K--DVTFIKVDVDKNGNAADAYGVSSIPAL   80 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T--TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C--CeEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            46667  567888777667899999999999999999999999999998 3  69999999998765  78999999999


Q ss_pred             EEEeC----CCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          237 LFFPA----GNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       237 ~~~~~----g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      ++|++    |..+.   ++.|.. ...|.+.+.++...+
T Consensus        81 ~~~~~~~~~G~~~~---~~~G~~-~~~l~~~~~~~~~~~  115 (118)
T 2f51_A           81 FFVKKEGNEIKTLD---QFVGAD-VSRIKADIEKFKHHH  115 (118)
T ss_dssp             EEEEEETTEEEEEE---EEESCC-HHHHHHHHHHHC---
T ss_pred             EEEeCCCCcceEEE---eecCCC-HHHHHHHHHHhhhcc
Confidence            99987    65543   677854 456999999987654

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.39  E-value=7.3e-17  Score=118.42  Aligned_cols=101  Identities=30%  Similarity=0.534  Sum_probs=88.8

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |..++.++|.+.+...+++++|+||++||++|+.+.+.+.+++..+.+  ++.++.+|++.+..  ..+++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            567888999988877789999999999999999999999999998875  68999999987765  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      ++|+.+.   .+.|..+.+.|.+||++.
T Consensus        81 ~~g~~~~---~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 KNGQVVD---RLVGAQPKEALKERIDKH  105 (106)
Confidence            8887654   788988889999999865

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.60  E-value=4.4e-15  Score=125.48  Aligned_cols=104  Identities=21%  Similarity=0.352  Sum_probs=90.3

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEe--CCCCccchhhhHHHHHHHHHhcC-CCcEEEEEEeCCC-----ccc--ccC
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIY--APWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTT-----NEH--HRA  228 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy--~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~vd~~~-----~~~--~~~  228 (313)
                      ...|..|+..+|++.+ +.+++++|.||  +|||+    +.|.|.++|..+.+ .+.+.|+.|||+.     +..  .+|
T Consensus        15 ~~~v~~Lt~~nF~~vi-~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTV-ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             CTTCEECCTTTHHHHH-TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             CCCcEECCHHHHHHHH-hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            3568899999999955 67789999999  99998    99999999999965 4479999999998     443  789


Q ss_pred             CCC--cCceEEEEeCCCCCcCceee--ccCcCHHHHHHHHHhcCC
Q 021368          229 KSD--GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       229 ~v~--~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~  269 (313)
                      +|.  ++||+++|+ |... .+..|  .|..+.+.|.+||+++++
T Consensus        90 ~V~~~~~PTl~~F~-G~~~-~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           90 KVDDKNFPSIFLFK-GNAD-EYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TCCTTSCCEEEEES-SSSS-SEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCCcCCCCeEEEEe-CCcC-cceeecccCCCCHHHHHHHHHHhhc
Confidence            999  999999999 8732 45688  999999999999999987

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.59  E-value=2.2e-15  Score=114.56  Aligned_cols=91  Identities=15%  Similarity=0.170  Sum_probs=79.1

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEe--CCCccc--ccCCCCcCceEEEEe-CCCCCcCcee
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD--GTTNEH--HRAKSDGFPTILFFP-AGNKSFDPIN  250 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd--~~~~~~--~~~~v~~~P~i~~~~-~g~~~~~~~~  250 (313)
                      ..+++++|+||++||++|+.+.+.+.+++..++.  ++.++.+|  ++.+..  ..|++.++|++++|. +|+.+.   .
T Consensus        24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~---~   98 (126)
T 2l57_A           24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG--KFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFY---V   98 (126)
T ss_dssp             CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS--SCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEE---E
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEE---E
Confidence            5678999999999999999999999999999874  69999999  776554  789999999999998 676653   7


Q ss_pred             eccCcCHHHHHHHHHhcCCCC
Q 021368          251 VDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       251 y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      +.|..+.+.|.+||++++...
T Consensus        99 ~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           99 HQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             EESCCCHHHHHHHHHHHCCCC
T ss_pred             ecCCCCHHHHHHHHHHHhccc
Confidence            889999999999999997543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.59  E-value=2.8e-15  Score=112.31  Aligned_cols=103  Identities=22%  Similarity=0.397  Sum_probs=88.0

Q ss_pred             CCeEEE-cCcChHHHhhc---CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          160 GDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       160 ~~v~~l-~~~~f~~~l~~---~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      +.+..+ +.++|++.+..   .+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  ..+++.++
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~   82 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAM   82 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSB
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCcC
Confidence            456677 56888888854   47899999999999999999999999999886   48999999998765  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      |++++|++|..+.   .+.| .+.+.|.++|.+.+.
T Consensus        83 Pt~~~~~~g~~~~---~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           83 PTFLFIKDGEKVD---SVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             SEEEEEETTEEEE---EEES-CCHHHHHHHHHHHHC
T ss_pred             cEEEEEeCCeEEE---EecC-CCHHHHHHHHHHHhc
Confidence            9999999888764   6778 588999999998864

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.59  E-value=1.3e-14  Score=110.67  Aligned_cols=107  Identities=20%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             CCceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           31 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        31 ~~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .+.+..++.++|+. +...+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   +..++++|+|.++  
T Consensus        16 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~--   90 (130)
T 2dml_A           16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK---HQSLGGQYGVQGF--   90 (130)
T ss_dssp             TSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHHTCCSS--
T ss_pred             CCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCC---CHHHHHHcCCCcc--
Confidence            45688999999998 4456678889999999 999999999999999999889999999998   6699999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      |++++++.+......+.|.++.+.|.+|+.+.+.
T Consensus        91 Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           91 PTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             SEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            9999998876546678999999999999998864

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.58  E-value=2.5e-15  Score=111.71  Aligned_cols=102  Identities=21%  Similarity=0.374  Sum_probs=86.7

Q ss_pred             CCeEEE-cCcChHHHhhc---CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          160 GDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       160 ~~v~~l-~~~~f~~~l~~---~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      +.+..+ +.++|++.+..   .+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  ..+++.++
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~   80 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCcc
Confidence            456777 56889988854   47899999999999999999999999999875   59999999998765  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      |++++|++|..+.   .+.| .+.+.|.++|.+.+
T Consensus        81 Pt~~~~~~G~~~~---~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           81 PTFIFLKDGKLVD---KTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TEEEEEETTEEEE---EEEC-CCTTHHHHHHHHHH
T ss_pred             cEEEEEeCCEEEE---EEec-CCHHHHHHHHHHhh
Confidence            9999999887654   6777 57788999998764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.58  E-value=4.1e-15  Score=115.01  Aligned_cols=104  Identities=20%  Similarity=0.342  Sum_probs=88.4

Q ss_pred             CCCeEEEc-CcChHHHhh---cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc
Q 021368          159 DGDVKIVV-GNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  232 (313)
Q Consensus       159 ~~~v~~l~-~~~f~~~l~---~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~  232 (313)
                      ...+..++ .++|.+.+.   ..+++++|+||++||++|+.+.+.+.+++..+.   ++.++.+|++.+..  ..|++.+
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   99 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKA   99 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccHHHHHHcCCCc
Confidence            45566664 689998774   347899999999999999999999999999884   58999999998765  7899999


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++++|++|..+.   .+.|. +.+.|.++|.+.+.
T Consensus       100 ~Pt~~~~~~G~~~~---~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A          100 TPTFFFLRDGQQVD---KLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             ESEEEEEETTEEEE---EEESC-CHHHHHHHHHHHHH
T ss_pred             ccEEEEEcCCeEEE---EEeCC-CHHHHHHHHHHHhc
Confidence            99999998887764   67787 88999999998864

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.58  E-value=7.1e-15  Score=124.32  Aligned_cols=129  Identities=17%  Similarity=0.195  Sum_probs=113.9

Q ss_pred             CCcccccCCCCCCHHHHHHHHHhcCCC-------ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhc
Q 021368            6 TEKISYFADGKFDKSTIADFVFSNKLP-------LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF   77 (313)
Q Consensus         6 ~~~~~~y~~g~~~~~~l~~fi~~~~~~-------~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~   77 (313)
                      ++..+.| .|..+..+|..|+.....+       .+..++.++|+..+.....++|.||++| ++|+.+.|.|.+++.++
T Consensus        98 ~g~~~~~-~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~  176 (241)
T 3idv_A           98 KGQAVDY-EGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKEL  176 (241)
T ss_dssp             TTEEEEC-CSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHH
T ss_pred             CCCcccc-cCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHH
Confidence            4566789 9999999999999876443       5788999999998888888899999999 99999999999999999


Q ss_pred             cCe---EEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           78 KGK---LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        78 ~~~---v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .+.   +.|+.|||+.   ++.++++|||.++  |++++|++|.  ...|.|.++.+.|.+|+.+.++
T Consensus       177 ~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~~~~g~--~~~~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          177 SKRSPPIPLAKVDATA---ETDLAKRFDVSGY--PTLKIFRKGR--PYDYNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             HTSSSCCCEEEEETTT---CHHHHHHTTCCSS--SEEEEEETTE--EEECCSCCSHHHHHHHHHHHTT
T ss_pred             hccCCcEEEEEEECCC---CHHHHHHcCCccc--CEEEEEECCe--EEEecCCCCHHHHHHHHHhhhC
Confidence            764   9999999998   6699999999999  9999998764  4568999999999999999865

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=1.3e-14  Score=112.27  Aligned_cols=107  Identities=13%  Similarity=0.167  Sum_probs=95.8

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe---EEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK---LIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~---v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+..++.++|+..+..+..++|+||++| ++|+.+.|.|.+++.++.+.   +.|+.|||++   +..++++|+|.++ 
T Consensus        17 ~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~-   92 (140)
T 2dj1_A           17 NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS---ASMLASKFDVSGY-   92 (140)
T ss_dssp             TTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT---CHHHHHHTTCCSS-
T ss_pred             CCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc---cHHHHHHCCCCcc-
Confidence            46889999999998888888999999999 99999999999999999875   9999999998   6699999999998 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                       |+++++.+|.  ...+.|.++.+.|.+|+.+.+....
T Consensus        93 -Pt~~~~~~G~--~~~~~g~~~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           93 -PTIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             -SEEEEEETTE--EEECCSCCCHHHHHHHHHHHHSSSC
T ss_pred             -CeEEEEECCc--EEEcCCCCCHHHHHHHHHHhcCCCC
Confidence             9999997664  5678899999999999999987544

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.57  E-value=2.3e-15  Score=113.11  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=79.7

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------c--ccCCCCc
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------H--HRAKSDG  232 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------~--~~~~v~~  232 (313)
                      .+..++.++|.+.+ ..+++++|+||++||++|+.+.|.+.+++..+..  .+.++  |++...      .  .++++.+
T Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~--~~~~~~~~~~~~~~~~~~~i~~   87 (118)
T 1zma_A           13 DLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFI--NSEEPSQLNDLQAFRSRYGIPT   87 (118)
T ss_dssp             TSEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEE--ETTCGGGHHHHHHHHHHHTCCS
T ss_pred             hhhcCCHHHHHHHH-hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC--eEEEE--ECCCcCcHHHHHHHHHHcCCCC
Confidence            46778889999887 4578999999999999999999999999998864  35444  544432      1  5789999


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHH
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLK  265 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~  265 (313)
                      +|++++|++|..+.   ++.|..+.+.|.+||+
T Consensus        88 ~Pt~~~~~~G~~~~---~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           88 VPGFVHITDGQINV---RCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             SCEEEEEETTEEEE---ECCTTCCHHHHHHHHT
T ss_pred             CCeEEEEECCEEEE---EecCCCCHHHHHHHhh
Confidence            99999999888754   7899999999999985

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.57  E-value=2.4e-15  Score=115.64  Aligned_cols=104  Identities=11%  Similarity=0.241  Sum_probs=85.6

Q ss_pred             CCCeEEEcC-cChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCc
Q 021368          159 DGDVKIVVG-NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~~-~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P  234 (313)
                      ...+..++. ++|.+.+... +++++|+||++||++|+.+.+.|.+++..+    .+.++.+|++.+..  .+|++.++|
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~P   94 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALP   94 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCC
Confidence            456777875 7888877543 579999999999999999999999988766    48999999998765  789999999


Q ss_pred             eEEEEe--CCC--CCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          235 TILFFP--AGN--KSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       235 ~i~~~~--~g~--~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      ++++|+  +|+  .+.   ++.|. +.+.|.++|.+.+..
T Consensus        95 t~~~~~~~~g~g~~~~---~~~G~-~~~~l~~~l~~~l~~  130 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVH---TVEGA-NQNDIEKAFQKYCLE  130 (133)
T ss_dssp             EEEEEEEETTEEEEEE---EEESC-CHHHHHHHHHHHSEE
T ss_pred             EEEEEEecCCCeEEEE---EEcCC-CHHHHHHHHHHHHHh
Confidence            999996  776  332   67786 889999999998753

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.57  E-value=1.8e-14  Score=121.34  Aligned_cols=103  Identities=20%  Similarity=0.350  Sum_probs=89.1

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeC--CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----ccc--ccCCC
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYA--PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NEH--HRAKS  230 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~--~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----~~~--~~~~v  230 (313)
                      ..|..|+..+|++.+ +.+++++|.||+  |||+    +.|.|.+++..+.+.+.+.|+.||++.     +..  .+|+|
T Consensus         5 ~~v~~Lt~~nF~~~i-~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHHHG-GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHHHH-cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            468899999999976 567899999999  9999    999999999999765579999999654     443  78999


Q ss_pred             C--cCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          231 D--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       231 ~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .  ++||+++|++|... .+..|.|..+.+.|.+||++++
T Consensus        80 ~~~~~PTl~~f~~G~~~-~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFE-NPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEETTCSS-CCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCcC-cceeecCCCCHHHHHHHHHHhc
Confidence            9  99999999999821 3568999999999999999996

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.54  E-value=3.7e-14  Score=104.41  Aligned_cols=104  Identities=18%  Similarity=0.268  Sum_probs=90.0

Q ss_pred             CceEEeCCCccccc-ccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           32 PLVTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        32 ~~v~~lt~~~~~~~-~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.|..++.++|+.. ...+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|||.++  |
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--P   76 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--P   76 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CTTHHHHTTCCSS--S
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCC---CHHHHHHcCCccc--C
Confidence            46789999999854 456678888999999 999999999999999999889999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +++++.+|. ....+.|..+.+.|.+|+.+.+
T Consensus        77 t~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           77 TLLLFKNGE-VAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCE-EEEEEecCCCHHHHHHHHHHhh
Confidence            998886553 3445688999999999999875

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.54  E-value=1.3e-14  Score=106.94  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=93.9

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      .+.+..++.++|+..+..+..++|+||++| ++|+.+.|.|.+++..+.+.+.|+.||++.   ++.++++|+|.++  |
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--P   77 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDE---NQKIADKYSVLNI--P   77 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEcccc---CHHHHHhcCcccC--C
Confidence            457889999999999888888999999999 999999999999999999889999999998   6799999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +++++.+|. ....+.|..+.+.|.+++.+++
T Consensus        78 t~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           78 TTLIFVNGQ-LVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEEEETTE-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEEEcCCc-EEEeeeccCCHHHHHHHHHHHh
Confidence            998886554 3455789999999999999875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.54  E-value=3.2e-14  Score=105.88  Aligned_cols=107  Identities=16%  Similarity=0.225  Sum_probs=92.4

Q ss_pred             CCCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      +.+.+..++.++|+..+ ..+..++|+||++| ++|+.+.|.|.+++..+.+.+.|+.||++.   ++.++++|||.++ 
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~---~~~~~~~~~v~~~-   80 (115)
T 1thx_A            5 MSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP---NPTTVKKYKVEGV-   80 (115)
T ss_dssp             -CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT---CHHHHHHTTCCSS-
T ss_pred             ccCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCC---CHHHHHHcCCCce-
Confidence            44568999999998754 56678888999999 999999999999999999889999999998   6699999999998 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       |+++++.+|. ....+.|..+.+.|.+|+.+.++
T Consensus        81 -Pt~~~~~~G~-~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           81 -PALRLVKGEQ-ILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             -SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -eEEEEEcCCE-EEEEecCCCCHHHHHHHHHHHhc
Confidence             9998986553 34457899999999999999876

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.54  E-value=1.3e-14  Score=107.38  Aligned_cols=104  Identities=17%  Similarity=0.316  Sum_probs=92.1

Q ss_pred             ceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           33 LVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        33 ~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      .+..++.++|+..+ ..+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|+|.++  |+
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt   79 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE---EKTLFQRFSLKGV--PQ   79 (111)
T ss_dssp             CSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---CHHHHHHTTCCSS--CE
T ss_pred             cceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc---ChhHHHhcCCCcC--CE
Confidence            47788999999988 67778889999999 999999999999999999889999999998   6699999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++++.+|. ....+.|..+.+.|.+|+.+.++
T Consensus        80 ~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           80 ILYFKDGE-YKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEEEETTE-EEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEECCE-EEEEEeccCCHHHHHHHHHHHhc
Confidence            99997654 34457899999999999999864

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.53  E-value=2.1e-14  Score=109.32  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=91.1

Q ss_pred             ceEEeCCCcccccccCCC-ccEEEEEeeC---CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           33 LVTIFTRENAPSVFESPI-KNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~-~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .+..+|.++|+..+.... +++|.||++|   ++|+.+.|++.+++.+|.+++.|++||.++   ++.++.+|||++.  
T Consensus        16 g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe---~~~la~~ygV~si--   90 (137)
T 2qsi_A           16 APTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEA---ERGLMARFGVAVC--   90 (137)
T ss_dssp             -CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGG---HHHHHHHHTCCSS--
T ss_pred             CCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCC---CHHHHHHcCCccC--
Confidence            456899999998776555 7888899988   899999999999999999999999999998   7799999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ||+++|++|+. .-...|..+.+.|.+++.+++.
T Consensus        91 PTlilFkdG~~-v~~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           91 PSLAVVQPERT-LGVIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             SEEEEEECCEE-EEEEESCCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCEE-EEEEeCCCCHHHHHHHHHHHhc
Confidence            99999998863 3446789999999999998873

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.53  E-value=4.5e-14  Score=119.26  Aligned_cols=147  Identities=13%  Similarity=0.032  Sum_probs=114.2

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEE--eeCCchhhhhHHHHHHHHhcc---CeEEEEEEeCCCc--ccccchhhhhCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLF--AVSNDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNE--DVGKPVSEYFGI  103 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~--~~~~~c~~~~~~~~~~a~~~~---~~v~f~~vd~~~~--~~~~~l~~~~~v  103 (313)
                      .+.+..|++.+|+.++.....++|.||  ++|  |. +.|.|+++|..+.   +.+.|+.|||+++  ..++.+|++|||
T Consensus        15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApW--Cg-l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V   91 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPY--GE-KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV   91 (248)
T ss_dssp             CTTCEECCTTTHHHHHTTSSEEEEEEEESSCC--SH-HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC
T ss_pred             CCCcEECCHHHHHHHHhcCCCEEEEEECCCCC--Cc-cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCC
Confidence            446889999999998877778899999  787  33 9999999999994   4799999999982  115699999999


Q ss_pred             C--CCCCcEEEEEcCCC-Cceecc--CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCC
Q 021368          104 T--GEAPKVLAYTGNDD-AKKHIL--DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES  178 (313)
Q Consensus       104 ~--~~~~P~i~~~~~~~-~~~~~~--~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~  178 (313)
                      +  ++  ||+++|. |. .....|  .|.++.+.|.+|+.+.++..     .+  .    .+.     -..++.++.   
T Consensus        92 ~~~~~--PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~-----~~--~----~g~-----i~~~d~l~~---  149 (248)
T 2c0g_A           92 DDKNF--PSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLY-----IG--R----DGC-----IKEFNEVLK---  149 (248)
T ss_dssp             CTTSC--CEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCC-----CC--C----TTC-----CHHHHHHHT---
T ss_pred             CcCCC--CeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccc-----cC--C----CCc-----hHHHHHHHH---
Confidence            9  89  9999998 65 345677  89999999999999986511     00  0    111     134555543   


Q ss_pred             CcEEEEEeCCCCccchhhhHHHHHHHHHh
Q 021368          179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHL  207 (313)
Q Consensus       179 k~~lv~fy~~~C~~C~~~~~~~~~la~~~  207 (313)
                           .|.+.||..|..+...+++++..+
T Consensus       150 -----~f~~~~~~~~~~~~~~~~~~~~~l  173 (248)
T 2c0g_A          150 -----NYANIPDAEQLKLIEKLQAKQEQL  173 (248)
T ss_dssp             -----TGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             -----HHhcccchhHHHHHHHHHHHHHHc
Confidence                 277888999988888888877765

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.53  E-value=2.9e-14  Score=105.95  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=90.3

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      +..++.++|++.+ .+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||+++   ++.++++|||.++  |+++
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~   76 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE---NQETAGKYGVMSI--PTLL   76 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTT---CCSHHHHTTCCSB--SEEE
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCC---CHHHHHHcCCCcc--cEEE
Confidence            5689999999888 7778889999999 999999999999999998889999999998   6699999999999  9998


Q ss_pred             EEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          113 YTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       113 ~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++.+|. ....+.|..+.+.|.+|+.+.+.
T Consensus        77 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~~~  105 (112)
T 2voc_A           77 VLKDGE-VVETSVGFKPKEALQELVNKHLL  105 (112)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHTTSC
T ss_pred             EEeCCE-EEEEEeCCCCHHHHHHHHHHHHH
Confidence            886553 34567899999999999998865

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.53  E-value=6.1e-14  Score=131.08  Aligned_cols=114  Identities=25%  Similarity=0.397  Sum_probs=95.5

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC-CCcEEEEEEeCCC--ccc--ccCCCCcC
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTT--NEH--HRAKSDGF  233 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~vd~~~--~~~--~~~~v~~~  233 (313)
                      .+.|..++.++|++.+.+.+++++|+|||+||++|+.+.|.|.+++..+.+ ...+.|+.+||+.  +..  .+|+|.++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            467999999999999987789999999999999999999999999999976 3369999999975  322  78999999


Q ss_pred             ceEEEEeCCCCCcC-ceeeccCcCHHHHHHHHHhcCCCCc
Q 021368          234 PTILFFPAGNKSFD-PINVDVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       234 P~i~~~~~g~~~~~-~~~y~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      |++++|.+|..... ...+.|..+.+.|.++|.+.+....
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            99999997654211 2356678999999999999976433

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.52  E-value=2.4e-15  Score=137.40  Aligned_cols=99  Identities=16%  Similarity=0.276  Sum_probs=82.2

Q ss_pred             CCCeEEEcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCC------cEEEEEEeCCCccc--ccCC
Q 021368          159 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD------SIVIAKMDGTTNEH--HRAK  229 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~------~v~~~~vd~~~~~~--~~~~  229 (313)
                      ...|..++.++|++.+.. ..++++|+|||+||++|+.+.|.|.+++..+....      .+.|+.||++.+..  .+|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            567999999999998853 34799999999999999999999999999997432      49999999998865  7899


Q ss_pred             CCcCceEEEEeCCCCCcCceeeccCcCHH
Q 021368          230 SDGFPTILFFPAGNKSFDPINVDVDRTVV  258 (313)
Q Consensus       230 v~~~P~i~~~~~g~~~~~~~~y~g~~~~~  258 (313)
                      |.++||+++|.+|... .+..|.|..+.+
T Consensus       102 V~~~PTlilf~~gg~~-~~~~y~G~r~~e  129 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSC-RSNEECGTSSLE  129 (470)
T ss_dssp             CCSSCEEEEEEESSCC-CTTSCCCCCCEE
T ss_pred             CCccCeEEEEECCCce-EEEEeeCCCCHH
Confidence            9999999999766543 455788754433

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=4.1e-14  Score=108.26  Aligned_cols=107  Identities=19%  Similarity=0.180  Sum_probs=94.1

Q ss_pred             CCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc----CeEEEEEEeCCCcccccchhhhhCCC
Q 021368           31 LPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK----GKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~----~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      ...+..++.++|+..+ ..+..++|+||++| ++|+.+.|.|.+++.++.    +.+.|+.|||+.   ++.++++|+|.
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~   82 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV---NQVLASRYGIR   82 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT---CCHHHHHHTCC
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC---CHHHHHhCCCC
Confidence            4568899999999865 56677888999999 999999999999999998    679999999998   66999999999


Q ss_pred             CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      ++  |++++++.|. ....+.|.++.+.|.+|+.+.+..
T Consensus        83 ~~--Pt~~~~~~g~-~~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           83 GF--PTIKIFQKGE-SPVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             SS--SEEEEEETTE-EEEEECSCCSHHHHHHHHHHHHHH
T ss_pred             ee--CeEEEEeCCC-ceEEecCCCCHHHHHHHHHHHhhc
Confidence            99  9999998754 456688999999999999998864

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.52  E-value=3.5e-14  Score=104.11  Aligned_cols=101  Identities=13%  Similarity=0.168  Sum_probs=90.1

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      .+..++.++|+..+ .+..++|+||++| ++|+.+.|.|.+++.++.+++.|+.||++.   ++.++++|+|.++  |++
T Consensus         4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   77 (106)
T 3die_A            4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE---NPSTAAKYEVMSI--PTL   77 (106)
T ss_dssp             CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSB--SEE
T ss_pred             ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCc---CHHHHHhCCCccc--CEE
Confidence            57889999999988 7778899999999 999999999999999999989999999998   6699999999999  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +++++|. ....+.|..+.+.|.+|+.++
T Consensus        78 ~~~~~G~-~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           78 IVFKDGQ-PVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEEETTE-EEEEEESCCCHHHHHHHHHTT
T ss_pred             EEEeCCe-EEEEEeCCCCHHHHHHHHHHh
Confidence            9997554 344678999999999999875

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.52  E-value=5.5e-14  Score=107.67  Aligned_cols=110  Identities=11%  Similarity=0.250  Sum_probs=93.8

Q ss_pred             CCCceEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           30 KLPLVTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ..+.|..++.++|+..+.. +..++|+||++| ++|+.+.|.|.+++.++.  +.+.|+.|||+.   +..++++|+|.+
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~   81 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA---NDITNDQYKVEG   81 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT---SCCCCSSCCCSS
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc---CHHHHhhcCCCc
Confidence            4567899999999997754 678888999999 999999999999999998  469999999998   558999999999


Q ss_pred             CCCcEEEEEcCCCC-ceeccC-CCCCHHHHHHHHHHHhcCC
Q 021368          106 EAPKVLAYTGNDDA-KKHILD-GELTLDKIKTFGEDFLEGK  144 (313)
Q Consensus       106 ~~~P~i~~~~~~~~-~~~~~~-g~~~~~~i~~fi~~~~~~~  144 (313)
                      +  |++++++.+.. ....+. |.++.+.|.+|+.+.+...
T Consensus        82 ~--Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           82 F--PTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             S--SEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             C--CEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            9  99999987653 234566 5699999999999998643

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.52  E-value=2e-14  Score=105.62  Aligned_cols=94  Identities=17%  Similarity=0.247  Sum_probs=78.2

Q ss_pred             CCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           39 RENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        39 ~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      .++|++.+.  .+..++|.||++| ++|+.+.|.|.+++..+.+ +.|+.||+++   +++++++|||+++  ||++++.
T Consensus         8 ~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~---~~~l~~~~~V~~~--PT~~~~~   81 (105)
T 3zzx_A            8 QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDE---CEDIAQDNQIACM--PTFLFMK   81 (105)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETTT---CHHHHHHTTCCBS--SEEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEeccc---CHHHHHHcCCCee--cEEEEEE
Confidence            356776553  2456777899999 9999999999999999987 8899999998   7799999999999  9999998


Q ss_pred             CCCCceeccCCCCCHHHHHHHHHHH
Q 021368          116 NDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       116 ~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +|.. ...+.| .+.+.|.+||.++
T Consensus        82 ~G~~-v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           82 NGQK-LDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             TTEE-EEEEES-CCHHHHHHHHHHH
T ss_pred             CCEE-EEEEeC-cCHHHHHHHHHhc
Confidence            7652 334566 6899999999874

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.52  E-value=5.4e-14  Score=107.23  Aligned_cols=106  Identities=18%  Similarity=0.261  Sum_probs=90.8

Q ss_pred             CCCceEEeCCCccccc-ccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~-~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      +...+..++.++|+.. ...+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||+++   ++.++++|+|.++ 
T Consensus        20 m~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~-   95 (128)
T 2o8v_B           20 HSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI-   95 (128)
T ss_dssp             -CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTT---CCTTSGGGTCCSS-
T ss_pred             cccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcc-
Confidence            3456889999999854 466778888999999 999999999999999999889999999998   5699999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |+++++.+|. ....+.|..+.+.|.+|+.+.+
T Consensus        96 -Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           96 -PTLLLFKNGE-VAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             -SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             -CEEEEEeCCE-EEEEEcCCCCHHHHHHHHHHhh
Confidence             9998886553 3445789999999999999876

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.52  E-value=5.3e-14  Score=105.39  Aligned_cols=106  Identities=14%  Similarity=0.215  Sum_probs=93.3

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      +.+..++.++|+..+..+..++|+||++| ++|+.+.|.|.+++..+.+   .+.|+.+||+.   ++.++++|+|.++ 
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~-   82 (120)
T 1mek_A            7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE---ESDLAQQYGVRGY-   82 (120)
T ss_dssp             TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT---CCSSHHHHTCCSS-
T ss_pred             CCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC---CHHHHHHCCCCcc-
Confidence            45889999999998888888899999999 9999999999999999973   59999999998   5699999999999 


Q ss_pred             CcEEEEEcCCCCc-eeccCCCCCHHHHHHHHHHHhc
Q 021368          108 PKVLAYTGNDDAK-KHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       108 ~P~i~~~~~~~~~-~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       |+++++.+|... ...+.|..+.+.|.+|+.+.++
T Consensus        83 -Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           83 -PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             -SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             -cEEEEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence             999999766532 3678899999999999998765

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.51  E-value=2.6e-14  Score=104.74  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      +..++.++|+.....+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||+++   ++.++++|||.++  |+++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~---~~~~~~~~~v~~~--Pt~~   76 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE---NPETTSQFGIMSI--PTLI   76 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT---CHHHHHHTTCCSS--SEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC---CHHHHHHcCCccc--cEEE
Confidence            578999999988878888899999999 999999999999999999889999999998   6699999999999  9998


Q ss_pred             EEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          113 YTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       113 ~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      ++.+|. ....+.|..+.+.|.+++.+.+
T Consensus        77 ~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           77 LFKGGR-PVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHTTTTT
T ss_pred             EEeCCe-EEEEEecCCCHHHHHHHHHHHh
Confidence            886553 3445789999999999988764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.51  E-value=1.4e-13  Score=103.49  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=89.6

Q ss_pred             CCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-----eEEEEEEeCCCcccccchhhhhCC
Q 021368           31 LPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-----KLIFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-----~v~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      .+.+..++.++|+..+ ..+..++|+||++| ++|+.+.|.|.+++.++.+     .+.|+.|||+..    .+++  +|
T Consensus         6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~~--~v   79 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN----DVPD--EI   79 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS----CCSS--CC
T ss_pred             CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc----cccc--cc
Confidence            4568899999999875 66778899999999 9999999999999999987     799999999873    3565  99


Q ss_pred             CCCCCcEEEEEcCCCCc-eeccCCCCCHHHHHHHHHHHhc
Q 021368          104 TGEAPKVLAYTGNDDAK-KHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~-~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .++  |++++++.++.. ...+.|.++.+.|.+|+.+.+.
T Consensus        80 ~~~--Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           80 QGF--PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             SSS--SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CcC--CeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence            988  999999877532 5678999999999999999865

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.51  E-value=7.8e-14  Score=102.36  Aligned_cols=103  Identities=14%  Similarity=0.146  Sum_probs=89.0

Q ss_pred             CceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           32 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.+..++.++|+..+ ..+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|||.++  |
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--P   76 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD---NPETPNAYQVRSI--P   76 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTT---CCHHHHHTTCCSS--S
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCC---CHHHHHhcCCCcc--C
Confidence            358899999998654 56678888999999 999999999999999999889999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +++++.+|. ....+.|..+.+.|.+|+.+.
T Consensus        77 t~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           77 TLMLVRDGK-VIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEEEETTE-EEEEEESCCCHHHHHHHHHHT
T ss_pred             EEEEEeCCE-EEEEecCCCCHHHHHHHHHhc
Confidence            998986554 344578999999999999875

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.51  E-value=7.5e-14  Score=109.10  Aligned_cols=107  Identities=19%  Similarity=0.232  Sum_probs=95.7

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      ...+..++.++|+..+..+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|+|.++  |
T Consensus        37 ~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~--P  111 (148)
T 3p2a_A           37 DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA---EPALSTRFRIRSI--P  111 (148)
T ss_dssp             CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             cCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcC---CHHHHHHCCCCcc--C
Confidence            456889999999998888888899999999 999999999999999998889999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      +++++++|. ....+.|.++.+.|.+|+.+.+..
T Consensus       112 t~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          112 TIMLYRNGK-MIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEEEEETTE-EEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECCe-EEEEEeCCCCHHHHHHHHHHHhcc
Confidence            999997654 344678999999999999999863

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.51  E-value=5.1e-14  Score=109.05  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=90.7

Q ss_pred             cCCCceEEeCCCcccccccC------------CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccccc
Q 021368           29 NKLPLVTIFTRENAPSVFES------------PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK   95 (313)
Q Consensus        29 ~~~~~v~~lt~~~~~~~~~~------------~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~   95 (313)
                      ...+.+..++.++|...+..            +..++|.||++| ++|+.+.|.|.+++..+.+.+.|+.||++.   ++
T Consensus        19 ~~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~   95 (141)
T 3hxs_A           19 KPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK---EP   95 (141)
T ss_dssp             ----CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTT---CH
T ss_pred             CCCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCC---CH
Confidence            34557888888888876543            667888999999 999999999999999999889999999998   66


Q ss_pred             chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           96 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        96 ~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .++++|||.++  |++++++.++. ...+.|.++.+.|.+|+.+++.
T Consensus        96 ~~~~~~~v~~~--Pt~~~~~~~g~-~~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           96 ELARDFGIQSI--PTIWFVPMKGE-PQVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHHHHTTCCSS--SEEEEECSSSC-CEEEESCCCHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCc--CEEEEEeCCCC-EEEEeCCCCHHHHHHHHHHHHc
Confidence            99999999999  99999965543 3467899999999999999875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=5.4e-14  Score=106.75  Aligned_cols=106  Identities=17%  Similarity=0.110  Sum_probs=92.5

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .+.+..++.++|++++..  .++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.||+++   +..++++|+|.++  
T Consensus         6 ~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~--   78 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE---QPGLSGRFIINAL--   78 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             CCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC---CHHHHHHcCCccc--
Confidence            457889999999987765  4888999999 9999999999999999986 69999999998   6699999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                      |+++++.+|.  ...+.|.++.+.|.+|+.+.+...+
T Consensus        79 Pt~~~~~~G~--~~~~~G~~~~~~l~~~l~~~~~~~~  113 (126)
T 1x5e_A           79 PTIYHCKDGE--FRRYQGPRTKKDFINFISDKEWKSI  113 (126)
T ss_dssp             SEEEEEETTE--EEECCSCCCHHHHHHHHHTCGGGGS
T ss_pred             CEEEEEeCCe--EEEeecCCCHHHHHHHHHHHhhccC
Confidence            9999996654  4678999999999999999876444

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.50  E-value=2.6e-14  Score=110.72  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=94.5

Q ss_pred             CCceEEeCCCccc-ccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           31 LPLVTIFTRENAP-SVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        31 ~~~v~~lt~~~~~-~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .+.+..++.++|. .+...+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||+++   ++.++++|+|.++  
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--   79 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT---NPWTAEKYGVQGT--   79 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT---CHHHHHHHTCCEE--
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCc---CHhHHHHCCCCcC--
Confidence            4678999999999 56677778889999999 999999999999999999999999999998   6699999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      |+++++.+|. ....+.|..+.+.|.+|+.+++..
T Consensus        80 Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           80 PTFKFFCHGR-PVWEQVGQIYPSILKNAVRDMLQH  113 (140)
T ss_dssp             SEEEEEETTE-EEEEEESSCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCc-EEEEEcCCCCHHHHHHHHHHHhcc
Confidence            9999997654 344678999999999999998863

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.50  E-value=3.2e-14  Score=104.69  Aligned_cols=104  Identities=15%  Similarity=0.174  Sum_probs=91.4

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      .+.+++.++|+.+...+..++|+||++| ++|+.+.|.|.+++..+.+.+.|+.||++.   ++.++++|+|.++  |++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   76 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE---NPKTAMRYRVMSI--PTV   76 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT---CHHHHHHTTCCSS--SEE
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC---CHhHHHhCCCCcC--CEE
Confidence            4778999999988887888899999999 999999999999999999889999999998   6699999999998  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +++.+|. ....+.|..+.+.|.+|+.+.++
T Consensus        77 ~~~~~g~-~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           77 ILFKDGQ-PVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             EEEETTE-EEEEEESCCCHHHHHHHHHTTC-
T ss_pred             EEEeCCc-EeeeEeCCCCHHHHHHHHHHHhh
Confidence            8886553 34457899999999999998765

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=2.6e-14  Score=109.04  Aligned_cols=103  Identities=20%  Similarity=0.363  Sum_probs=83.7

Q ss_pred             EEcCcChHHHhh---cCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCc--cc--ccCCCCcC
Q 021368          164 IVVGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTN--EH--HRAKSDGF  233 (313)
Q Consensus       164 ~l~~~~f~~~l~---~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~--~~--~~~~v~~~  233 (313)
                      .++..+|.+.+.   ..+++++|+||++||++|+.+.+.+   ..++..+..  .+.++.+|++..  ..  ..|++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~   87 (130)
T 2kuc_A           10 AFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR--HFVNLKMDMEKGEGVELRKKYGVHAY   87 (130)
T ss_dssp             CCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH--HSEEEEECSSSTTHHHHHHHTTCCSS
T ss_pred             CcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc--CeEEEEEecCCcchHHHHHHcCCCCC
Confidence            357788888773   3578999999999999999999998   777776654  588899999852  22  68999999


Q ss_pred             ceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          234 PTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       234 P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      |++++| ++|+.+.   .+.|..+.+.|.+||++.+...
T Consensus        88 Pt~~~~d~~G~~~~---~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           88 PTLLFINSSGEVVY---RLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             CEEEEECTTSCEEE---EEESCCCHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCcEEE---EecCCCCHHHHHHHHHHHHHhc
Confidence            999999 5676653   7889889999999999986543

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.49  E-value=8.9e-13  Score=112.43  Aligned_cols=209  Identities=15%  Similarity=0.135  Sum_probs=155.2

Q ss_pred             CCCceEEeC-CCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           30 KLPLVTIFT-RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        30 ~~~~v~~lt-~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .-|.+.+|+ .+.++.++.....++|.||.++  |......|.++|..+.+.+.|+.+.      +..+++++++. .  
T Consensus         4 ~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~--~~~~~~~f~~~A~~lr~~~~F~~~~------~~~v~~~~~~~-~--   72 (252)
T 2h8l_A            4 GSPASVPLRTEEEFKKFISDKDASIVGFFDDS--FSEAHSEFLKAASNLRDNYRFAHTN------VESLVNEYDDN-G--   72 (252)
T ss_dssp             --CCEEECCSHHHHHHHHTSSSCEEEEEESCT--TSHHHHHHHHHHHHTTTTSCEEEEC------CHHHHHHHCSS-S--
T ss_pred             CCCCceeecCHHHHHHHhhcCCeEEEEEECCC--CChHHHHHHHHHHhcccCcEEEEEC------hHHHHHHhCCC-C--
Confidence            457788885 4556666766666778888874  7778899999999998889998874      23789999997 3  


Q ss_pred             cEEEEEcCC------CCceecc-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcE
Q 021368          109 KVLAYTGND------DAKKHIL-DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV  181 (313)
Q Consensus       109 P~i~~~~~~------~~~~~~~-~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~  181 (313)
                      |++++|+.+      ...+..| .|.++.+.|.+||....-                 +.|..++.+++..+   .+.++
T Consensus        73 p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~-----------------Plv~e~t~~n~~~~---~~~~~  132 (252)
T 2h8l_A           73 EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF-----------------GICPHMTEDNKDLI---QGKDL  132 (252)
T ss_dssp             EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSS-----------------CSSCEECTTTHHHH---SSSSE
T ss_pred             CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhccc-----------------CCeeecccccHhhh---cCCCe
Confidence            888888753      1345678 899999999999999743                 46789999999885   34567


Q ss_pred             EEEEeCCCCccc----hhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCC----CcCceEEEEeCCCCCcCcee
Q 021368          182 LLEIYAPWCGHC----QAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKS----DGFPTILFFPAGNKSFDPIN  250 (313)
Q Consensus       182 lv~fy~~~C~~C----~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v----~~~P~i~~~~~g~~~~~~~~  250 (313)
                      +|.|+...+..+    ..+...+.++|+.+++. ..+.|+.+|+.....  ..|++    ..+|+++++.....   ...
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~---ky~  209 (252)
T 2h8l_A          133 LIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGE---KFV  209 (252)
T ss_dssp             EEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSC---EEE
T ss_pred             EEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCc---Eec
Confidence            777775543222    24778888999999862 349999999987764  67788    36899999854322   124


Q ss_pred             eccCcCHHH--HHHHHHhcCCCCc
Q 021368          251 VDVDRTVVA--LYKFLKKNASIPF  272 (313)
Q Consensus       251 y~g~~~~~~--l~~fi~~~~~~~~  272 (313)
                      +.+..+.+.  |.+|+++.+.-++
T Consensus       210 ~~~~~t~~~~~i~~F~~~~~~Gkl  233 (252)
T 2h8l_A          210 MQEEFSRDGKALERFLQDYFDGNL  233 (252)
T ss_dssp             CCSCCCTTSHHHHHHHHHHHHTCS
T ss_pred             CCcccCcchHHHHHHHHHHHCCCc
Confidence            566777778  9999999886554

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.49  E-value=6.4e-15  Score=112.38  Aligned_cols=105  Identities=24%  Similarity=0.424  Sum_probs=88.1

Q ss_pred             CCCeEEE-cCcChHHHhhc---CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc
Q 021368          159 DGDVKIV-VGNNFDEIVLD---ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG  232 (313)
Q Consensus       159 ~~~v~~l-~~~~f~~~l~~---~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~  232 (313)
                      .+.+..+ +.++|.+.+..   .+++++|+||++||++|+.+.+.|.+++..+.   ++.++.+|++.+..  .+|++.+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   89 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEA   89 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCS
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCc
Confidence            3456667 45889988864   57899999999999999999999999999885   48899999988765  7899999


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      +|++++|++|+.+.   .+.| .+.+.|.++|.+.+..
T Consensus        90 ~Pt~~~~~~g~~~~---~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           90 MPTFLFIKDGAEAD---KVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             SCCCCBCTTTTCCB---CCCT-TCTTTHHHHHHHHTSS
T ss_pred             cceEEEEeCCeEEE---EEeC-CCHHHHHHHHHHHHhc
Confidence            99999998887764   6777 5778899999998753

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.49  E-value=5.8e-14  Score=102.32  Aligned_cols=102  Identities=16%  Similarity=0.205  Sum_probs=90.1

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      |.+++.++|++.+..+..++|+||++| ++|+.+.|.|.+++..+.+ +.|+.+|++.   ++.++++|+|.++  |+++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~~~v~~~--Pt~~   74 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDE---NPDIAARYGVMSL--PTVI   74 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS--CEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCC---CHHHHHhCCcccc--CEEE
Confidence            467899999998877778899999999 9999999999999999999 9999999998   6699999999998  9999


Q ss_pred             EEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          113 YTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       113 ~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++.+|. ....+.|..+.+.|.+|+.+.++
T Consensus        75 ~~~~g~-~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           75 FFKDGE-PVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEECCe-EhhhccCCCCHHHHHHHHHHHhc
Confidence            886553 34457899999999999998864

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.49  E-value=4.3e-14  Score=107.01  Aligned_cols=104  Identities=19%  Similarity=0.288  Sum_probs=83.6

Q ss_pred             CceEEeCCCcccc-cccCCCccEEEEEeeC-C--------------chhhhhHHHHHHHHhccCeEEEEEEeCCCccccc
Q 021368           32 PLVTIFTRENAPS-VFESPIKNQLLLFAVS-N--------------DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK   95 (313)
Q Consensus        32 ~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~--------------~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~   95 (313)
                      +.|..++.++|+. +...+.+++|.||++| +              +|+.+.|.|.+++.++.+.+.|+.||++.   ++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~---~~   79 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NP   79 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTS---CT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCC---CH
Confidence            4578899999985 4466778888999999 9              99999999999999999889999999998   66


Q ss_pred             chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368           96 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus        96 ~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      .++++|||.++  |+++++.+|. ....+.|..+.+.|.+|+.+.+
T Consensus        80 ~l~~~~~v~~~--Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           80 GTAPKYGIRGI--PTLLLFKNGE-VAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TTGGGGTCCBS--SEEEEEESSS-EEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHHcCCCcc--CEEEEEECCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999999  9999886554 3445789999999999998764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.49  E-value=1.4e-14  Score=110.79  Aligned_cols=104  Identities=10%  Similarity=0.094  Sum_probs=92.7

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .+..+|.++|++.+....+++|.|+++|   ++|+.+.|+++++|.+|.++ +.|++||.++   ++.++.+|||++.  
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe---~~~lA~~ygV~sI--   92 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ---SEAIGDRFGAFRF--   92 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH---HHHHHHHHTCCSS--
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC---CHHHHHHcCCccC--
Confidence            5679999999998776667888899987   89999999999999999999 9999999998   7799999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ||+++|++|+. .-...|..+.+.|.+++.+++.
T Consensus        93 PTlilFk~G~~-v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           93 PATLVFTGGNY-RGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             SEEEEEETTEE-EEEEESCCCHHHHHHHHHHHHC
T ss_pred             CEEEEEECCEE-EEEEecCCCHHHHHHHHHHHhc
Confidence            99999998863 3456789999999999999885

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.49  E-value=1.6e-13  Score=105.32  Aligned_cols=105  Identities=11%  Similarity=0.129  Sum_probs=89.4

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc--Cce
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG--FPT  235 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~--~P~  235 (313)
                      +.|..++.++|.+.+ ..+.+++|+||++ |++|+.+.+.+.++|..+++  .+.|+.+|.+.+..  ..|++.+  +|+
T Consensus         6 plv~~~t~~~f~~~~-~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g--k~~f~~vd~d~~~~~a~~~gi~~~~iPt   81 (133)
T 2djk_A            6 PLIGEIGPETYSDYM-SAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPA   81 (133)
T ss_dssp             CCSEECCHHHHHHHH-HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSE
T ss_pred             CceeccChHHHHHHh-cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC--eEEEEEEchHHhHHHHHHcCCCcccCCE
Confidence            347789999999875 6778999999999 89999999999999999987  69999999998875  7899999  999


Q ss_pred             EEEEeC--CCCCcCceeec--cCcCHHHHHHHHHhcCCCCc
Q 021368          236 ILFFPA--GNKSFDPINVD--VDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       236 i~~~~~--g~~~~~~~~y~--g~~~~~~l~~fi~~~~~~~~  272 (313)
                      +++|++  |...    .+.  |..+.+.|.+||++.+.-++
T Consensus        82 l~i~~~~~g~~~----~~~~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           82 FAIQEVAKNQKF----PFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             EEEECTTTCCBC----CCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             EEEEecCcCccc----CCCCccccCHHHHHHHHHHHHcCCc
Confidence            999987  4442    444  88999999999999875433

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.49  E-value=5.7e-14  Score=110.80  Aligned_cols=106  Identities=12%  Similarity=0.099  Sum_probs=93.2

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      ...+.+++..+|+..+..+..++|.||++| ++|+.+.|.|++++.++.+.+.|+.||+++   ++.++++|||+++  |
T Consensus        46 ~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~--P  120 (155)
T 2ppt_A           46 TGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA---HPAVAGRHRIQGI--P  120 (155)
T ss_dssp             CSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---STHHHHHTTCCSS--S
T ss_pred             CCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCc---cHHHHHHcCCCcC--C
Confidence            345788999999988777778899999999 999999999999999999889999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +++++.+|. ....+.|..+.+.|.+|+.+.++
T Consensus       121 t~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          121 AFILFHKGR-ELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             EEEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEeCCe-EEEEecCCCCHHHHHHHHHHHhc
Confidence            999987654 34457899999999999999876

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.49  E-value=1.2e-13  Score=102.49  Aligned_cols=107  Identities=14%  Similarity=0.169  Sum_probs=91.4

Q ss_pred             CCCceEEeCCCccccc-ccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~-~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      +...+..++.++|... ...+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|||.++ 
T Consensus         3 m~~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~-   78 (112)
T 1t00_A            3 MAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE---NPGTAAKYGVMSI-   78 (112)
T ss_dssp             SSCCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             ccceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCC---CHHHHHhCCCCcc-
Confidence            3456789999999764 455667888999999 999999999999999998889999999998   6699999999998 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       |+++++.+|. ....+.|..+.+.|.+++.+.++
T Consensus        79 -Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           79 -PTLNVYQGGE-VAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             -SEEEEEETTE-EEEEEESCCCHHHHHHHTHHHHC
T ss_pred             -cEEEEEeCCE-EEEEEeCCCCHHHHHHHHHHHhh
Confidence             9998887654 34557899999999999998864

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.48  E-value=7.8e-14  Score=102.33  Aligned_cols=97  Identities=8%  Similarity=0.050  Sum_probs=74.2

Q ss_pred             CCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC
Q 021368           38 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  116 (313)
Q Consensus        38 t~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~  116 (313)
                      +.++|++.+..+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||++.   ++.++++|+|.++  |+++++++
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~~~~   80 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNY-VEKIEILLQD---MQEIAGRYAVFTG--PTVLLFYN   80 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTT-EEEEEEEECC---C---------CCC--CEEEEEET
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCC-ceEEEEECCC---CHHHHHhcCCCCC--CEEEEEeC
Confidence            56778888878888899999999 9999999999999999965 9999999998   6699999999998  99999976


Q ss_pred             CCCceeccCCCCCHHHHHHHHHHHh
Q 021368          117 DDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       117 ~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      |. ....+.|..+.+.|.+++.+++
T Consensus        81 G~-~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           81 GK-EILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             TE-EEEEEESSCCHHHHHHHHHTTC
T ss_pred             Ce-EEEEEeCCcCHHHHHHHHHHhh
Confidence            54 3455688999999999998764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.48  E-value=5.2e-14  Score=108.90  Aligned_cols=107  Identities=7%  Similarity=0.038  Sum_probs=87.9

Q ss_pred             eEEeCC-Ccccccc--cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           34 VTIFTR-ENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        34 v~~lt~-~~~~~~~--~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +..++. ++|++.+  ....+++|.||++| ++|+.+.|.|+++|.++.+++.|+.||.++   +++++..|+|.+.  |
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe---~~e~a~~y~V~si--P   97 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITE---VPDFNTMYELYDP--V   97 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---CCTTTTTTTCCSS--E
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCC---CHHHHHHcCCCCC--C
Confidence            555655 6787655  35667888899999 999999999999999999989999999998   7799999999988  9


Q ss_pred             EEEEEcCCCCce-e-------ccCCCCC-HHHHHHHHHHHhcCCC
Q 021368          110 VLAYTGNDDAKK-H-------ILDGELT-LDKIKTFGEDFLEGKL  145 (313)
Q Consensus       110 ~i~~~~~~~~~~-~-------~~~g~~~-~~~i~~fi~~~~~~~~  145 (313)
                      |+++|.+|+... -       +..|..+ .+.|.++|+.++.|..
T Consensus        98 T~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~  142 (160)
T 2av4_A           98 SVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGAR  142 (160)
T ss_dssp             EEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhh
Confidence            999888775321 1       5678776 9999999998876543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.48  E-value=1.3e-13  Score=101.84  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=89.5

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc---CeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~---~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .+.+..++.++|++.+. +..++|+||++| ++|+.+.|.|.+++.++.   +.+.|+.||++.   ++.++++|+|.++
T Consensus         4 ~~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~v~~~   79 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA---ERNICSKYSVRGY   79 (111)
T ss_dssp             -CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             CCcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc---cHhHHHhcCCCcc
Confidence            35688999999999887 558889999999 999999999999999986   359999999998   6699999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        |+++++.+|. ....+.|..+.+.|.+|+.+.
T Consensus        80 --Pt~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           80 --PTLLLFRGGK-KVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             --SEEEEEETTE-EEEEECSCCSHHHHHHHHHHH
T ss_pred             --cEEEEEeCCc-EEEeccCCcCHHHHHHHHHhc
Confidence              9999997664 345678999999999999874

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.47  E-value=2.2e-13  Score=95.60  Aligned_cols=81  Identities=21%  Similarity=0.275  Sum_probs=70.5

Q ss_pred             CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368          179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRT  256 (313)
Q Consensus       179 k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~  256 (313)
                      .+.+++||++||++|+.+.+.+.+++..+.+  ++.+..+|++.+..  .++++.++|++++  +|+.     .+.|..+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----~~~G~~~   73 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV-----EFIGAPT   73 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE-----ECCSSSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE-----eeecCCC
Confidence            4689999999999999999999999999875  69999999988765  7899999999999  5542     6888888


Q ss_pred             HHHHHHHHHhcC
Q 021368          257 VVALYKFLKKNA  268 (313)
Q Consensus       257 ~~~l~~fi~~~~  268 (313)
                      .+.|.+||++.+
T Consensus        74 ~~~l~~~l~~~l   85 (85)
T 1fo5_A           74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            899999998763

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.47  E-value=1.3e-13  Score=106.60  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=78.9

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      .+.+.+++.++|...+.....++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|+|.++  |
T Consensus        32 ~~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--P  106 (140)
T 1v98_A           32 LPWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE---HPGLAARYGVRSV--P  106 (140)
T ss_dssp             -----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             CCccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHCCCCcc--C
Confidence            367888999999987655555788899999 999999999999999999789999999998   6699999999998  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      +++++.+|. ....+.|..+.+.|.+|+.+++.+
T Consensus       107 t~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          107 TLVLFRRGA-PVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             EEEEEETTE-EEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             EEEEEeCCc-EEEEEeCCCCHHHHHHHHHHHHcc
Confidence            999887654 344578999999999999998865

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.47  E-value=1.1e-13  Score=106.55  Aligned_cols=107  Identities=15%  Similarity=0.238  Sum_probs=90.3

Q ss_pred             CCceEEeCCCccccccc------------CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccch
Q 021368           31 LPLVTIFTRENAPSVFE------------SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPV   97 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~------------~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l   97 (313)
                      ...+..++.++|.+.+.            .+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   +..+
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l   84 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK---EQEL   84 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCC---CHHH
Confidence            34678888888887554            3567888999999 999999999999999999889999999998   6699


Q ss_pred             hhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368           98 SEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus        98 ~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      +++|+|.++  |++++++.++. ...+.|..+.+.|.+|+.+.+..
T Consensus        85 ~~~~~v~~~--Pt~~~~~~~G~-~~~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           85 AGAFGIRSI--PSILFIPMEGK-PEMAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             HHHTTCCSS--CEEEEECSSSC-CEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHcCCCCC--CEEEEECCCCc-EEEEeCCCCHHHHHHHHHHHhhc
Confidence            999999999  99999943322 23578999999999999999764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.46  E-value=8.2e-14  Score=105.44  Aligned_cols=99  Identities=18%  Similarity=0.299  Sum_probs=80.4

Q ss_pred             eEEEcCcChHHHhhc-CCCcEEEEEeCC-------CCccchhhhHHHHHHHHHhcCCCcEEEEEEeC-------CCccc-
Q 021368          162 VKIVVGNNFDEIVLD-ESKDVLLEIYAP-------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG-------TTNEH-  225 (313)
Q Consensus       162 v~~l~~~~f~~~l~~-~~k~~lv~fy~~-------~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~-------~~~~~-  225 (313)
                      +...+.++|.+.+.+ .+++++|+||++       ||++|+.+.|.+.+++..+.+  ++.|+.+|+       +.+.. 
T Consensus         7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEEEEECCCchhhhchhHHH
Confidence            556778899998865 579999999999       999999999999999998865  699999999       44443 


Q ss_pred             -ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          226 -HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       226 -~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                       .++++.++|++++|.++...   ..+.| .+.+.|.+||.+
T Consensus        85 ~~~~~i~~~Pt~~~~~~~~~~---~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGTPQKL---VESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHCCCSSSEEEETTSSCEE---EGGGG-GCHHHHHHHHHC
T ss_pred             HHHCCCCeeCEEEEEcCCceE---ecccc-CCHHHHHHHHhc
Confidence             67999999999999875432   23444 577889999864

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.46  E-value=1.1e-13  Score=104.04  Aligned_cols=106  Identities=14%  Similarity=0.147  Sum_probs=90.8

Q ss_pred             CCCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      .-+.+..++.++|++.+ ..+...+|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|+|.++ 
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~-   86 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD---HTDLAIEYEVSAV-   86 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTT---THHHHHHTTCCSS-
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC---CHHHHHHcCCCcc-
Confidence            34578889999998744 55667888899999 999999999999999998889999999998   6699999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |+++++.+|. ....+.|..+.+.|.+|+.+.+
T Consensus        87 -Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           87 -PTVLAMKNGD-VVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             -SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             -cEEEEEeCCc-EEEEEcCCCCHHHHHHHHHHHh
Confidence             9998986553 3445788899999999999876

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.46  E-value=4.5e-14  Score=106.44  Aligned_cols=105  Identities=18%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             CceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           32 PLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        32 ~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.+..++.++|.. +...+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|+|.++  |
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P   77 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQA---YPQTCQKAGIKAY--P   77 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcC---CHHHHHHcCCCcc--c
Confidence            4578899999954 6667778889999999 999999999999999999889999999998   6699999999998  9


Q ss_pred             EEEEEcCCCCceeccCCC----CCHHHHHHHHHHHhc
Q 021368          110 VLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLE  142 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~~  142 (313)
                      ++++++.+.. ...+.|.    ++.+.|.+|+.+.+.
T Consensus        78 t~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           78 SVKLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHH
Confidence            9999976543 3334443    899999999999876

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.46  E-value=7.7e-14  Score=107.21  Aligned_cols=101  Identities=25%  Similarity=0.472  Sum_probs=80.2

Q ss_pred             EcCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCc
Q 021368          165 VVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFP  234 (313)
Q Consensus       165 l~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P  234 (313)
                      .+.+++...+.+ .+++++|+||++||++|+.+.+.+   .+++..+.   ++.++.+|++.+..      ..|++.++|
T Consensus        17 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~~~~~~l~~~~~v~~~P   93 (134)
T 2fwh_A           17 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDAQDVALLKHLNVLGLP   93 (134)
T ss_dssp             CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCHHHHHHHHHTTCCSSS
T ss_pred             cCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCcchHHHHHHHcCCCCCC
Confidence            344667766643 378999999999999999999998   88988886   38999999965421      689999999


Q ss_pred             eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          235 TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       235 ~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++++| ++|+.+ ...++.|..+.+.|.++|.+..+
T Consensus        94 t~~~~d~~G~~v-~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           94 TILFFDGQGQEH-PQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             EEEEECTTSCBC-GGGCBCSCCCHHHHHHHHHHC--
T ss_pred             EEEEECCCCCEe-eeeeeeeccCHHHHHHHHHhcCc
Confidence            99999 677764 11378999999999999987743

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.46  E-value=1.8e-13  Score=100.56  Aligned_cols=102  Identities=21%  Similarity=0.249  Sum_probs=88.0

Q ss_pred             eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      +..++.++|+..+ ..+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|||.++  |++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   77 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE---SPNVASEYGIRSI--PTI   77 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHHTCCSS--CEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCCcC--CEE
Confidence            5678888888754 55667888899999 999999999999999999889999999998   6699999999998  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +++.+|. ....+.|..+.+.+.+++.+++
T Consensus        78 ~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           78 MVFKGGK-KCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EEESSSS-EEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEeCCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            8886554 3455789999999999999875

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.46  E-value=7.7e-14  Score=104.44  Aligned_cols=103  Identities=13%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             CCceEEeCCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           31 LPLVTIFTRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      .+.....+.++|++.+.  .+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|||.++ 
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~---~~~l~~~~~v~~~-   85 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDD---CQDVASECEVKSM-   85 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTT---THHHHHHTTCCSS-
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC---CHHHHHHcCCccc-
Confidence            34556677888888877  7778899999999 9999999999999999999 9999999998   6799999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |+++++.+|. ....+.|. +.+.|.+++.+++
T Consensus        86 -Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           86 -PTFQFFKKGQ-KVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             -SEEEEESSSS-EEEEEESC-CHHHHHHHHHHHC
T ss_pred             -cEEEEEeCCe-EEEEEcCC-CHHHHHHHHHHhC
Confidence             9999996654 34456787 9999999998763

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.45  E-value=1.3e-13  Score=103.68  Aligned_cols=109  Identities=13%  Similarity=0.091  Sum_probs=90.9

Q ss_pred             hcCCCceEEeCCCccccc-ccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           28 SNKLPLVTIFTRENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        28 ~~~~~~v~~lt~~~~~~~-~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ......+..++.++|... ...+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|+|.+
T Consensus         8 ~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~   84 (121)
T 2i1u_A            8 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT---NPETARNFQVVS   84 (121)
T ss_dssp             ----CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCS
T ss_pred             hhhcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---CHHHHHhcCCCc
Confidence            344557889999999864 456678888999999 999999999999999998889999999998   669999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +  |+++++.+|. ....+.|..+.+.|.+|+.+.++
T Consensus        85 ~--Pt~~~~~~g~-~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           85 I--PTLILFKDGQ-PVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             S--SEEEEEETTE-EEEEEESCCCHHHHHHHTCSCCC
T ss_pred             C--CEEEEEECCE-EEEEecCCCCHHHHHHHHHHHHh
Confidence            9  9999887554 34457899999999999988764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.45  E-value=2.3e-13  Score=99.47  Aligned_cols=102  Identities=18%  Similarity=0.272  Sum_probs=87.4

Q ss_pred             eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      |..++.++|+..+ ..+.+++++||++| ++|+.+.|.|.+++.++.+.+.|+.+|++.   ++.++++|+|.++  |++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   76 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE---APGIATQYNIRSI--PTV   76 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--SEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcc---hHHHHHhCCCCcc--cEE
Confidence            5678999998854 45667888899999 999999999999999999889999999998   6699999999998  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +++.+|. ....+.|..+.+.+.+++.+++
T Consensus        77 ~~~~~g~-~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           77 LFFKNGE-RKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEeCCe-EEEEEecCCCHHHHHHHHHhhC
Confidence            8887554 3445678899999999998763

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.45  E-value=1.3e-13  Score=108.39  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             CCCceEEeC-CCcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           30 KLPLVTIFT-RENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        30 ~~~~v~~lt-~~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ....+..++ .++|+.++..  +..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|||.+
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~~~---~~~l~~~~~v~~   85 (153)
T 2wz9_A           10 AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ-VSFVKLEAEG---VPEVSEKYEISS   85 (153)
T ss_dssp             --CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---SHHHHHHTTCCS
T ss_pred             ccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCC-eEEEEEECCC---CHHHHHHcCCCC
Confidence            345567776 4788887766  778899999999 9999999999999999865 9999999998   669999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhh
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVL  175 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~  175 (313)
                      +  |+++++++|. ....+.| .+.+.|.+|+.+.++....          .....+..++..+|+....
T Consensus        86 ~--Pt~~~~~~G~-~~~~~~G-~~~~~l~~~i~~~l~~~~~----------~~~~~~~~l~~~~f~~~~~  141 (153)
T 2wz9_A           86 V--PTFLFFKNSQ-KIDRLDG-AHAPELTKKVQRHASSGSF----------LPSAKVKVDTDPNSSSVDK  141 (153)
T ss_dssp             S--SEEEEEETTE-EEEEEES-SCHHHHHHHHHHHSCTTSS----------CSCCCCCCC----------
T ss_pred             C--CEEEEEECCE-EEEEEeC-CCHHHHHHHHHHHhccccC----------CCccccccCCCCChhhHHH
Confidence            9  9999998553 3334556 5788999999999864322          1234566678888887653

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.45  E-value=1.2e-13  Score=105.85  Aligned_cols=87  Identities=22%  Similarity=0.427  Sum_probs=73.8

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHH--HHHHHhcCCCcEEEEEEeC---CCccc--ccCCC---CcCceEEEE-eCCCC
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYN--KLAKHLRGVDSIVIAKMDG---TTNEH--HRAKS---DGFPTILFF-PAGNK  244 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~--~la~~~~~~~~v~~~~vd~---~~~~~--~~~~v---~~~P~i~~~-~~g~~  244 (313)
                      ..+++++|+||++||++|+.+.+.|.  +++..+..  ++.++.+|+   +.+..  .+|++   .++|++++| ++|+.
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCE
Confidence            45899999999999999999999999  99998865  699999999   55543  78999   999999999 67776


Q ss_pred             CcCceeecc-------CcCHHHHHHHHHhc
Q 021368          245 SFDPINVDV-------DRTVVALYKFLKKN  267 (313)
Q Consensus       245 ~~~~~~y~g-------~~~~~~l~~fi~~~  267 (313)
                      +.   .+.|       ..+.+.|.+||++.
T Consensus       105 ~~---~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          105 RY---TTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EE---ECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EE---EecCCcccccccCCHHHHHHHHHHh
Confidence            54   5666       57889999999764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.44  E-value=2.9e-13  Score=95.01  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCH
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV  257 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~  257 (313)
                      ..+++||++||++|+.+.+.+.+++..+.+  ++.+..+|++.+..  .++++.++|++++  +|+.     ++.|..+.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----~~~G~~~~   73 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-----RFVGAPSR   73 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-----EEECSSCC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE-----EEccCCCH
Confidence            468999999999999999999999999976  68999999998765  7899999999998  5543     68888888


Q ss_pred             HHHHHHHHhcC
Q 021368          258 VALYKFLKKNA  268 (313)
Q Consensus       258 ~~l~~fi~~~~  268 (313)
                      +.|.++|.+.+
T Consensus        74 ~~l~~~l~~~l   84 (85)
T 1nho_A           74 EELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.44  E-value=3.2e-13  Score=117.32  Aligned_cols=107  Identities=15%  Similarity=0.277  Sum_probs=94.0

Q ss_pred             CCCceEEeCCCcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           30 KLPLVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ..+.|..+|.++|+.++..  +.+++|.||++| ++|+.+.|.|.+++.++.+++.|+.|||+.   ++.++++|||.++
T Consensus         5 ~~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~   81 (287)
T 3qou_A            5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA---EQMIAAQFGLRAI   81 (287)
T ss_dssp             -CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTT---CHHHHHTTTCCSS
T ss_pred             CCCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCcc---CHHHHHHcCCCCC
Confidence            3568999999999998754  678888999999 999999999999999999999999999998   6799999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+++++.+|. ....+.|..+.+.+.+|+...++
T Consensus        82 --Pt~~~~~~G~-~~~~~~g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           82 --PTVYLFQNGQ-PVDGFQGPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             --SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHSC
T ss_pred             --CeEEEEECCE-EEEEeeCCCCHHHHHHHHHHHcC
Confidence              9999997654 33457899999999999999864

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.44  E-value=1.6e-13  Score=110.07  Aligned_cols=100  Identities=14%  Similarity=0.204  Sum_probs=78.3

Q ss_pred             EEcCcChHHHhh---cCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCcc-------------
Q 021368          164 IVVGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE-------------  224 (313)
Q Consensus       164 ~l~~~~f~~~l~---~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~-------------  224 (313)
                      .++..+|.+.+.   ..+++++|+||++||++|+.+.+.+   ..+...++.  ++.++.+|++...             
T Consensus        30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~  107 (172)
T 3f9u_A           30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGT  107 (172)
T ss_dssp             CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTE
T ss_pred             ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcch
Confidence            355677777663   5689999999999999999984444   555555554  6899999998765             


Q ss_pred             ---------------cccCCCCcCceEEEE-eCCCCCcCceeeccCcC-HHHHHHHHHhcC
Q 021368          225 ---------------HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRT-VVALYKFLKKNA  268 (313)
Q Consensus       225 ---------------~~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~-~~~l~~fi~~~~  268 (313)
                                     ...|++.++|+++++ ++|+.+.   .+.|..+ .+.|.+||.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~---~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          108 ERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLN---KSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSS---CCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEe---eccCCCCCHHHHHHHHHHHH
Confidence                           346889999999999 6777764   6778777 999999998864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.43  E-value=2.7e-13  Score=112.38  Aligned_cols=110  Identities=14%  Similarity=0.176  Sum_probs=96.9

Q ss_pred             CCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           30 KLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      ..+.+..++.++|+..+..+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.|||+.   ++.+|++|||.++  
T Consensus        95 ~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--  169 (210)
T 3apq_A           95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD---DRMLCRMKGVNSY--  169 (210)
T ss_dssp             TCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             CCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCc---cHHHHHHcCCCcC--
Confidence            3456889999999988877888999999999 999999999999999999889999999998   6699999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                      |+++++..|. ....+.|.++.+.|.+|+.+.+...+
T Consensus       170 Pt~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          170 PSLFIFRSGM-AAVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             SEEEEECTTS-CCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             CeEEEEECCC-ceeEecCCCCHHHHHHHHHHhCcccc
Confidence            9999996654 35568899999999999999987443

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.43  E-value=4.4e-13  Score=112.82  Aligned_cols=106  Identities=11%  Similarity=0.058  Sum_probs=90.5

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEe--eCCchhhhhHHHHHHHHhccC--eEEEEEEeCCC--cccccchhhhhCCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAKSFKG--KLIFVYVQMDN--EDVGKPVSEYFGIT  104 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~--~~~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~--~~~~~~l~~~~~v~  104 (313)
                      ...|..|++.+|+.++.....++|.||+  +|  |. +.|.|.++|..+.+  .+.|+.|||++  +..++.+|++|+|+
T Consensus         4 ~~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pW--Cg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~   80 (240)
T 2qc7_A            4 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPY--GE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   80 (240)
T ss_dssp             CTTCEECCTTHHHHHGGGCSEEEEEECCSSCC--SH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred             CCCceECCHHHHHHHHcCCCCEEEEEeCCCCC--Cc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence            4568899999999988877788999999  87  43 99999999999963  69999999654  22377999999999


Q ss_pred             --CCCCcEEEEEcCCC-CceeccCCCCCHHHHHHHHHHHh
Q 021368          105 --GEAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       105 --~~~~P~i~~~~~~~-~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                        ++  ||+++|..|. .....|.|.++.+.|.+|+.+..
T Consensus        81 ~~~~--PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           81 KESY--PVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             GGGC--SEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCC--CEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence              89  9999998876 34668899999999999999874

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.43  E-value=4.7e-13  Score=111.94  Aligned_cols=110  Identities=19%  Similarity=0.279  Sum_probs=96.1

Q ss_pred             CCCceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+.+..+|.++|+. +...+..++|.||++| ++|+.+.|.|.+++.++.+.+.|+.|||+.   ++.++++|+|.++ 
T Consensus        10 ~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~-   85 (222)
T 3dxb_A           10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI-   85 (222)
T ss_dssp             CSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CTTTGGGGTCCSB-
T ss_pred             CCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCC---CHHHHHHcCCCcC-
Confidence            356788999999998 5667778889999999 999999999999999999989999999998   6699999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                       |+++++++|. ....+.|..+.+.|.+|+.+.+.+..
T Consensus        86 -Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l~~~~  121 (222)
T 3dxb_A           86 -PTLLLFKNGE-VAATKVGALSKGQLKEFLDANLAGSA  121 (222)
T ss_dssp             -SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHSCCSC
T ss_pred             -CEEEEEECCe-EEEEeccccChHHHHHHHHhhccccc
Confidence             9999997654 34467899999999999999987543

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.42  E-value=9e-13  Score=97.53  Aligned_cols=104  Identities=16%  Similarity=0.208  Sum_probs=87.3

Q ss_pred             CCceEEeCCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           31 LPLVTIFTRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      .+.+..++.++|...+.  .+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++.  ++.++++|||.++ 
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~--~~~~~~~~~v~~~-   79 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELGIRVV-   79 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHCCSBS-
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcc--hHHHHHHcCCCee-
Confidence            45788999999998776  4667888999999 9999999999999999987 99999999832  5699999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |+++++.+|. ....+.|. ..+.|.+++.+++
T Consensus        80 -Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           80 -PTFKILKENS-VVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             -SEEEEESSSS-EEEEEESS-CHHHHHHHHHHHH
T ss_pred             -eEEEEEeCCc-EEEEEcCC-CHHHHHHHHHHhh
Confidence             9988887664 33345675 4899999998875

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.42  E-value=7.3e-13  Score=100.40  Aligned_cols=105  Identities=9%  Similarity=0.071  Sum_probs=88.1

Q ss_pred             ceEEeCCCccc-----ccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEe--CCCcccccchhhhhCCC
Q 021368           33 LVTIFTRENAP-----SVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ--MDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        33 ~v~~lt~~~~~-----~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd--~~~~~~~~~l~~~~~v~  104 (313)
                      .+..++..+++     .....+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||  ++.   +..++++|||.
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~---~~~~~~~~~v~   81 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK---NIDLAYKYDAN   81 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH---HHHHHHHTTCC
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc---hHHHHHHcCCc
Confidence            34566667766     45566778889999999 999999999999999998779999999  776   66999999999


Q ss_pred             CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++  |++++++.++.....+.|..+.+.|.+++.+.+.
T Consensus        82 ~~--Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~  117 (126)
T 2l57_A           82 IV--PTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGV  117 (126)
T ss_dssp             SS--SEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             ce--eEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence            98  9999998444344567899999999999999865

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.42  E-value=3.9e-13  Score=98.38  Aligned_cols=100  Identities=14%  Similarity=0.182  Sum_probs=85.0

Q ss_pred             eEEeCC-Cccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           34 VTIFTR-ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        34 v~~lt~-~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.++++ ++|+..+.  .+..++++||++| ++|+.+.|.|.+++.++++.+.|+.||+++   ++.++++|||.++  |
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--P   76 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE---CEDIAMEYNISSM--P   76 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSS--S
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccc---hHHHHHHcCCCcc--c
Confidence            567777 78887776  6778888999999 999999999999999997779999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +++++.+|. ....+.| .+.+.|.+|+.++
T Consensus        77 t~~~~~~G~-~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           77 TFVFLKNGV-KVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEEEETTE-EEEEEES-CCHHHHHHHHHHT
T ss_pred             EEEEEcCCc-EEEEEcC-CCHHHHHHHHHHh
Confidence            998887654 3345677 7899999999875

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.42  E-value=3.1e-13  Score=102.59  Aligned_cols=101  Identities=14%  Similarity=0.103  Sum_probs=88.3

Q ss_pred             eEEeCC-CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~-~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      +.++++ ++|++.+..+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|+|.++  |++
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~---~~~l~~~~~v~~~--Pt~   94 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKFAKVDADN---NSEIVSKCRVLQL--PTF   94 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS--SEE
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCC---CHHHHHHcCCCcc--cEE
Confidence            788998 999988888888899999999 9999999999999999965 9999999998   6699999999999  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +++.+|. ....+.| .+.+.|.+++.++++
T Consensus        95 ~i~~~G~-~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           95 IIARSGK-MLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EEEETTE-EEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EEEeCCe-EEEEEeC-CCHHHHHHHHHHHhc
Confidence            8886654 2334667 788999999999875

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.42  E-value=4.8e-14  Score=104.47  Aligned_cols=86  Identities=10%  Similarity=0.084  Sum_probs=67.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC---CcEEEEEEeCCCccc----ccCCCCcCceEEEEeCCCCCcCce
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH----HRAKSDGFPTILFFPAGNKSFDPI  249 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~~~----~~~~v~~~P~i~~~~~g~~~~~~~  249 (313)
                      +...++|+||++||++|+.+.+.+.   ..+...   ..+.+.++|++.+..    ..++|.++||+++|++|+.+.   
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~---~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~---   90 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIA---PQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESG---   90 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTT---TTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEE---
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHH---hhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEe---
Confidence            3467999999999999999986433   223221   126788889888742    578999999999999998876   


Q ss_pred             eeccCcCHHHHHHHHHhcC
Q 021368          250 NVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       250 ~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++.|....+.|.+||+..+
T Consensus        91 Ri~G~~~~~~f~~~L~~~l  109 (116)
T 3dml_A           91 RLEGYPGEDFFWPMLARLI  109 (116)
T ss_dssp             EEECCCCHHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHHHH
Confidence            8899999999999998764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.41  E-value=4e-13  Score=102.27  Aligned_cols=103  Identities=11%  Similarity=0.104  Sum_probs=85.8

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      .+.+..++.+.+......+..++|.||++| ++|+.+.|.|.+++.++++.+.|+.||++.   ++.++++|||.++  |
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~--P   98 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK---NESLARKFSVKSL--P   98 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGG---CHHHHHHTTCCSS--S
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCCc--C
Confidence            344445555556666677778889999999 999999999999999999889999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      +++++++|. ....+.|.++.+.|.+|+.+
T Consensus        99 t~~~~~~G~-~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           99 TIILLKNKT-MLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEEEETTE-EEEEESSCCCHHHHHHHHTT
T ss_pred             EEEEEECCE-EEEEecCCCCHHHHHHHHHh
Confidence            998986553 44567899999999999875

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.41  E-value=3.5e-13  Score=99.79  Aligned_cols=103  Identities=21%  Similarity=0.265  Sum_probs=86.6

Q ss_pred             ceEEe-CCCcccccccC----CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           33 LVTIF-TRENAPSVFES----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        33 ~v~~l-t~~~~~~~~~~----~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .+..+ +.++|++.+..    +..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.||++.   ++.++++|+|.++
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~   79 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA---VAAVAEAAGITAM   79 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---THHHHHHHTCCBS
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCc---hHHHHHHcCCCcc
Confidence            35666 45778877654    678899999999 999999999999999999779999999998   6699999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+++++.+|. ....+.|. +.+.|.+|+.++++
T Consensus        80 --Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           80 --PTFHVYKDGV-KADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             --SEEEEEETTE-EEEEEESC-CHHHHHHHHHHHHC
T ss_pred             --cEEEEEECCe-EEEEEcCC-CHHHHHHHHHHHhc
Confidence              9998887654 33456787 99999999998864

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.40  E-value=2.9e-13  Score=113.35  Aligned_cols=126  Identities=10%  Similarity=-0.013  Sum_probs=103.7

Q ss_pred             ccccCCCCCCHHHHHHHHHhcC--CCceEEeCCCcccccccCCCcc-EEEEEeeC-CchhhhhHHHHHHHHhcc----Ce
Q 021368            9 ISYFADGKFDKSTIADFVFSNK--LPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFK----GK   80 (313)
Q Consensus         9 ~~~y~~g~~~~~~l~~fi~~~~--~~~v~~lt~~~~~~~~~~~~~~-~v~f~~~~-~~c~~~~~~~~~~a~~~~----~~   80 (313)
                      ...| .|..+..++..|+....  ......++.++++.+.....++ +|.||++| ++|+.+.|.|.+++.++.    +.
T Consensus        92 ~~~~-~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~  170 (226)
T 1a8l_A           92 GVRY-FGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGK  170 (226)
T ss_dssp             SEEE-ESCCCTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eEEE-eccCcHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCc
Confidence            4678 88888888888886532  1234567787877776555566 88899999 999999999999999998    57


Q ss_pred             EEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368           81 LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus        81 v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +.|+.||++.   ++.++++|||.++  |+++++..|. ....+.|.++.+.|.+|+.+.+
T Consensus       171 v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          171 ILGDMVEAIE---YPEWADQYNVMAV--PKIVIQVNGE-DRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             EEEEEEEGGG---CHHHHHHTTCCSS--CEEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEEEccc---CHHHHHhCCCccc--CeEEEEeCCc-eeEEEcCCCCHHHHHHHHHHhh
Confidence            9999999998   6699999999999  9998887664 3456789999999999998875

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.39  E-value=6.6e-13  Score=98.11  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      .....+.++|+..+..+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||++.   ++.++++|+|.++  |++
T Consensus         8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~---~~~l~~~~~v~~~--Pt~   81 (109)
T 3f3q_A            8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDE---LGDVAQKNEVSAM--PTL   81 (109)
T ss_dssp             CEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS--SEE
T ss_pred             ccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCC---CHHHHHHcCCCcc--CEE
Confidence            3445667788888888888999999999 9999999999999999988 9999999998   6699999999999  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +++++|. ....+.|. +.+.|.+++.++
T Consensus        82 ~~~~~G~-~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           82 LLFKNGK-EVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EEEETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEeCC-CHHHHHHHHHhh
Confidence            9998554 33445676 779999999875

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.39  E-value=3.2e-13  Score=104.74  Aligned_cols=103  Identities=8%  Similarity=0.075  Sum_probs=77.7

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC---CchhhhhHHHHHHHHhccCeEE--EEEEeCCCcccccchhhhhCCCCCC
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLI--FVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~v~--f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      .+..++.++|++.+......+|+|++.|   ++|+.+.|.|.+++.++ +++.  |+.||+++   ++.++++|||.++ 
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~---~~~la~~~~V~~i-   92 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQ---SEAIGDRFNVRRF-   92 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHH---HHHHHHTTTCCSS-
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCC---CHHHHHhcCCCcC-
Confidence            6789999999998877666777777765   78999999999999999 7788  99999998   6799999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       |++++|++|. ....+.|.++.+.|.+|+.+.+.
T Consensus        93 -PT~~~fk~G~-~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           93 -PATLVFTDGK-LRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             -SEEEEESCC-----CEESCCCHHHHHHHHHHHHC
T ss_pred             -CeEEEEeCCE-EEEEEeCCCCHHHHHHHHHHHhc
Confidence             9999997665 34457899999999999999986

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.39  E-value=3.7e-13  Score=99.90  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=88.8

Q ss_pred             CCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           30 KLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      ..+....++.++|++.+..+..++|+||++| ++|+.+.|.|.+++.++.+ +.|+.||++.   ++.++++|||.++  
T Consensus         7 ~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~---~~~~~~~~~v~~~--   80 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDE---VSEVTEKENITSM--   80 (112)
T ss_dssp             --CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---THHHHHHTTCCSS--
T ss_pred             ceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCC---CHHHHHHcCCCcc--
Confidence            3456778899999998888888899999999 9999999999999999987 9999999998   6699999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      |+++++.+|. ....+.|. +.+.|.+|+.+.+
T Consensus        81 Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           81 PTFKVYKNGS-SVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             SEEEEEETTE-EEEEEESC-CHHHHHHHHHTTC
T ss_pred             cEEEEEECCc-EEEEEeCC-CHHHHHHHHHHhh
Confidence            9998887654 33456787 9999999998764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.39  E-value=1.2e-12  Score=96.26  Aligned_cols=100  Identities=9%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             eEEe-CCCcccccc--cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           34 VTIF-TRENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        34 v~~l-t~~~~~~~~--~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.++ +.++|++.+  ..+...+|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|||.++  |
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--P   76 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQ---CQGTAATNNISAT--P   76 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---SHHHHHHTTCCSS--S
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCC-cEEEEEECcc---CHHHHHhcCCCcc--c
Confidence            3444 567888877  46778889999999 9999999999999999955 9999999998   6699999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +++++.+|. ....+.| ...++|.+|+.+++
T Consensus        77 t~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           77 TFQFFRNKV-RIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEEEETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             EEEEEECCe-EEEEEeC-CCHHHHHHHHHHhc
Confidence            999987664 2334567 45566999998875

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.39  E-value=6.1e-13  Score=100.18  Aligned_cols=105  Identities=18%  Similarity=0.260  Sum_probs=89.2

Q ss_pred             CCCceEEeCCCccccccc----CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368           30 KLPLVTIFTRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~----~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      ..+.+..++.++|+..+.    .+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|||.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~---~~~~~~~~~v~   86 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDE---LKPIAEQFSVE   86 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCC
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCC---CHHHHHHcCCC
Confidence            345677888888888664    3678888999999 9999999999999999998 9999999998   66999999999


Q ss_pred             CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++  |+++++.+|. ....+.|.. .+.|.+|+.++++
T Consensus        87 ~~--Pt~~~~~~G~-~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           87 AM--PTFLFMKEGD-VKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SS--SEEEEEETTE-EEEEEESSC-HHHHHHHHHHHHS
T ss_pred             cc--cEEEEEeCCE-EEEEEeCcC-HHHHHHHHHHHhc
Confidence            99  9998887654 334567878 9999999999875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.4e-12  Score=96.55  Aligned_cols=102  Identities=17%  Similarity=0.169  Sum_probs=82.9

Q ss_pred             eEEeCC-CcccccccC---CCccEEEEEeeC-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           34 VTIFTR-ENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        34 v~~lt~-~~~~~~~~~---~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      |..+++ ++|++.+..   +..++|.||++| ++|+.+.|.|.+++.++. +.+.|+.||++.   ++.++++|||.++ 
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~-   77 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE---NSEISELFEISAV-   77 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc---CHHHHHHcCCCcc-
Confidence            567887 888887765   678888999999 999999999999999953 349999999998   6699999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       |+++++.+|. ....+.|. ..+.|.+++.++++
T Consensus        78 -Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           78 -PYFIIIHKGT-ILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             -SEEEEEETTE-EEEEECSC-CHHHHHHHHHHHHH
T ss_pred             -cEEEEEECCE-EEEEecCC-CHHHHHHHHHHHHh
Confidence             9998887554 33446676 55679999998864

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.09  E-value=3.4e-14  Score=108.46  Aligned_cols=89  Identities=20%  Similarity=0.291  Sum_probs=74.0

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCc--cc--ccCCCCcCceEEEE--eCCCC--
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTN--EH--HRAKSDGFPTILFF--PAGNK--  244 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~--~~--~~~~v~~~P~i~~~--~~g~~--  244 (313)
                      ..+++++|+||++||++|+.+.+.+   .+++..+..  ++.++.+|++..  ..  ..|++.++|++++|  .+|..  
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA--RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE   94 (130)
Confidence            4678999999999999999999999   888887765  588899998533  22  68999999999999  45665  


Q ss_pred             CcCceeeccCcCHHHHHHHHHhcCC
Q 021368          245 SFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       245 ~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +.   ++.|..+.+.|.++|++.++
T Consensus        95 ~~---~~~G~~~~~~l~~~l~~~~~  116 (130)
T 2lst_A           95 VG---RLFGSRPRAEFLKELRQVCV  116 (130)
Confidence            43   78898888999999998865

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.38  E-value=1.1e-11  Score=105.37  Aligned_cols=208  Identities=12%  Similarity=0.109  Sum_probs=152.3

Q ss_pred             CCCceEEeCC-CcccccccC-CCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTR-ENAPSVFES-PIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~-~~~~~~~~~-~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      +-|.+.+|+. ++++.++.. ...++|.||.+  .|....+.|.++|..+.+.+.|+...      +..+++++++.   
T Consensus         4 ~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~--~~~~~~~~F~~~A~~lr~~~~F~~t~------~~~v~~~~~v~---   72 (250)
T 3ec3_A            4 GSPPSKEILTLKQVQEFLKDGDDVVILGVFQG--VGDPGYLQYQDAANTLREDYKFHHTF------STEIAKFLKVS---   72 (250)
T ss_dssp             -CCSSEECCCHHHHHHHHHHCSSCEEEEECSC--TTCHHHHHHHHHHHHHTTTCCEEEEC------CHHHHHHHTCC---
T ss_pred             CCCCceecCCHHHHHHHHhcCCCeEEEEEEcC--CCchHHHHHHHHHHhhhcCcEEEEEC------cHHHHHHcCCC---
Confidence            3566777865 666666665 55677778876  47899999999999998889999864      33788999995   


Q ss_pred             CcEEEEEcCC------CCceeccC--CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCC
Q 021368          108 PKVLAYTGND------DAKKHILD--GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESK  179 (313)
Q Consensus       108 ~P~i~~~~~~------~~~~~~~~--g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k  179 (313)
                      .|+|++|+.+      ......|.  |..+.+.|.+||....-                 +.|..++.+++....  .++
T Consensus        73 ~p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~-----------------Plv~e~t~~n~~~~~--~~~  133 (250)
T 3ec3_A           73 LGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL-----------------PLVGHRKTSNDAKRY--SKR  133 (250)
T ss_dssp             SSEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS-----------------CTEEEECTTTHHHHS--CSS
T ss_pred             CCeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCC-----------------CceeecCccchhhhh--ccC
Confidence            3888888752      12345666  57899999999999743                 568899999998866  367


Q ss_pred             cEEEEEeCC-CC---c-cchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCc--C-ceEEEEeCCCCCcCce
Q 021368          180 DVLLEIYAP-WC---G-HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG--F-PTILFFPAGNKSFDPI  249 (313)
Q Consensus       180 ~~lv~fy~~-~C---~-~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~--~-P~i~~~~~g~~~~~~~  249 (313)
                      +.++.|+.. .+   . .+..+...+.++|+.++   .+.|+.+|+..+..  ..|++..  . |.++++..+..   ..
T Consensus       134 ~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k---ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~~---ky  207 (250)
T 3ec3_A          134 PLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP---EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDESGK---KF  207 (250)
T ss_dssp             SEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTSC---EE
T ss_pred             ccEEEEEecccccccchhHHHHHHHHHHHHHhhc---ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCCc---ee
Confidence            777777753 22   2 23557888999999988   48999999887654  5677753  4 57777654332   11


Q ss_pred             eec-cCcCHHHHHHHHHhcCCCCcc
Q 021368          250 NVD-VDRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       250 ~y~-g~~~~~~l~~fi~~~~~~~~~  273 (313)
                      .+. +..+.+.|.+|+.+.+.-++.
T Consensus       208 ~~~~~~~t~~~i~~Fv~~~~~Gkl~  232 (250)
T 3ec3_A          208 AMEPEEFDSDALREFVMAFKKGKLK  232 (250)
T ss_dssp             ECCCCSCCHHHHHHHHHHHHTTCCC
T ss_pred             cCCcccCCHHHHHHHHHHHHCCCcc
Confidence            344 578999999999999876643

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.37  E-value=2.4e-12  Score=97.19  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             cCCCceEEeCCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           29 NKLPLVTIFTRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        29 ~~~~~v~~lt~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      .....+..++.++|...+.  .+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++.  ++.++++|||.+
T Consensus        15 ~~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~--~~~~~~~~~v~~   91 (124)
T 1faa_A           15 AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELGIRV   91 (124)
T ss_dssp             TTTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHCCSS
T ss_pred             hcCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcc--hHHHHHHcCCCe
Confidence            3456789999999988765  5678888999999 9999999999999999987 99999999832  568999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +  |+++++.+|. ....+.|.. .+.|.+++.+.+
T Consensus        92 ~--Pt~~~~~~G~-~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           92 V--PTFKILKENS-VVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             S--SEEEEEETTE-EEEEEESSC-HHHHHHHHHHHT
T ss_pred             e--eEEEEEeCCc-EEEEEcCCC-HHHHHHHHHHhh
Confidence            9  9988887664 233456765 899999998864

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.36  E-value=1.4e-12  Score=97.50  Aligned_cols=101  Identities=18%  Similarity=0.294  Sum_probs=85.3

Q ss_pred             CceEEeCC-Cccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIFTR-ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~lt~-~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+.+++. ++|+..+.  .+..++|.||++| ++|+.+.|.|.+++.++  .+.|+.||++.   ++.++++|||.++ 
T Consensus        13 ~~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~---~~~~~~~~~v~~~-   86 (117)
T 2xc2_A           13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDK---LEETARKYNISAM-   86 (117)
T ss_dssp             CEEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTT---SHHHHHHTTCCSS-
T ss_pred             heeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCc---cHHHHHHcCCCcc-
Confidence            34788888 88888776  6778888999999 99999999999999999  59999999998   6699999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |+++++.+|. ....+.| .+.+.|.+++.+++
T Consensus        87 -Pt~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           87 -PTFIAIKNGE-KVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             -SEEEEEETTE-EEEEEES-SCHHHHHHHHHHHC
T ss_pred             -ceEEEEeCCc-EEEEEeC-CCHHHHHHHHHHhC
Confidence             9998887654 3344567 68899999998763

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.36  E-value=1.1e-12  Score=97.08  Aligned_cols=101  Identities=9%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      +..++.++| +.+..+...+|+||++| ++|+.+.|.|.+++..+.+ +.|+.||++.   ++.++++|||.++  |+++
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~---~~~l~~~~~v~~~--Pt~~   77 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ-VAISSVDSEA---RPELMKELGFERV--PTLV   77 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTT-SCEEEEEGGG---CHHHHHHTTCCSS--CEEE
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCC-cEEEEEcCcC---CHHHHHHcCCccc--CEEE
Confidence            456778888 55556678889999999 9999999999999999875 9999999988   6699999999998  9999


Q ss_pred             EEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          113 YTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       113 ~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++.+|. ....+.|..+.+.|.+++..+++
T Consensus        78 ~~~~G~-~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           78 FIRDGK-VAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             EEESSS-EEEEEESCCCHHHHHHHHHTC--
T ss_pred             EEECCE-EEEEEcCCCCHHHHHHHHHHHhh
Confidence            986654 34456798999999999998765

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.36  E-value=1.3e-12  Score=95.13  Aligned_cols=99  Identities=12%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             EEeCC-Cccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           35 TIFTR-ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        35 ~~lt~-~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      .++++ ++|++.+.  .+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.+|++.   ++.++++|||.++  |+
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~~~~---~~~~~~~~~v~~~--Pt   75 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE-VEFAKVDVDQ---NEEAAAKYSVTAM--PT   75 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS--SE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCC-CEEEEEeccC---CHHHHHHcCCccc--cE
Confidence            45555 67777766  5677888899999 9999999999999999985 9999999998   6699999999988  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      ++++.+|. ....+.| .+.+.|.+|+.+++
T Consensus        76 ~~~~~~g~-~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           76 FVFIKDGK-EVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EEEEETTE-EEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEEeCCc-EEEEEeC-CCHHHHHHHHHhhC
Confidence            98887654 3344567 68999999998763

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.36  E-value=1.3e-12  Score=98.35  Aligned_cols=104  Identities=16%  Similarity=0.201  Sum_probs=87.8

Q ss_pred             CCceEEeCC-CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           31 LPLVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        31 ~~~v~~lt~-~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ...+..+++ ++|++.+..+..++|+||++| ++|+.+.|.|.+++.++.+. +.|+.||++.   ++.++++|+|.++ 
T Consensus        14 ~~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~---~~~~~~~~~v~~~-   89 (121)
T 2j23_A           14 RGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE---QSQIAQEVGIRAM-   89 (121)
T ss_dssp             CCCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT---CHHHHHHHTCCSS-
T ss_pred             CcceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC---CHHHHHHcCCCcc-
Confidence            345566665 778888877878899999999 99999999999999999886 9999999998   6699999999998 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |+++++.+|. ....+.|. +.+.|.+|+.+.+
T Consensus        90 -Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           90 -PTFVFFKNGQ-KIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             -SEEEEEETTE-EEEEEESS-CHHHHHHHHHHHT
T ss_pred             -cEEEEEECCe-EEeeEcCC-CHHHHHHHHHHhh
Confidence             9998887554 33446777 9999999999875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.35  E-value=1e-12  Score=96.03  Aligned_cols=96  Identities=11%  Similarity=0.214  Sum_probs=81.2

Q ss_pred             CCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368           38 TRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        38 t~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      +.++++..+.  .+...+|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|+|.++  |+++++
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~   80 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD---CQDVASESEVKSM--PTFQFF   80 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTT---CHHHHHHTTCCBS--SEEEEE
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhh---hHHHHHHcCCCcC--cEEEEE
Confidence            3455666665  6778889999999 9999999999999999988 9999999998   6799999999999  999999


Q ss_pred             cCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          115 GNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       115 ~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      .+|. ....+.|. +.+.|.+|+.+++
T Consensus        81 ~~g~-~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           81 KKGQ-KVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             ETTE-EEEEEESS-CHHHHHHHHHHHC
T ss_pred             ECCe-EEEEEeCC-CHHHHHHHHHHhC
Confidence            7664 33456787 9999999998763

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.33  E-value=1.2e-12  Score=109.85  Aligned_cols=126  Identities=8%  Similarity=-0.020  Sum_probs=104.1

Q ss_pred             CCcccccCCCCCCHHHHHHHHHhcC--CCceEEeCCCcccccccCCCcc-EEEEEeeC-CchhhhhHHHHHHHHhccCeE
Q 021368            6 TEKISYFADGKFDKSTIADFVFSNK--LPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFKGKL   81 (313)
Q Consensus         6 ~~~~~~y~~g~~~~~~l~~fi~~~~--~~~v~~lt~~~~~~~~~~~~~~-~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v   81 (313)
                      .+....| +|..+..++..|+....  .+.+..++.++++.+.....++ ++.||++| ++|+.+.|.|.+++.++. .+
T Consensus        91 ~~~~~~~-~G~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-~v  168 (229)
T 2ywm_A           91 KDYGIRY-IGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-YI  168 (229)
T ss_dssp             SCCCEEE-ESCCCTTHHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TE
T ss_pred             Cccccee-cCCccHHHHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-Ce
Confidence            3456789 99988899999987643  2456788888888876555566 56799999 999999999999999995 59


Q ss_pred             EEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           82 IFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        82 ~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .|+.||++.   ++.++++|||.++  |++++  +|.  ...+.|.++.+.|.+|+.+.++
T Consensus       169 ~~~~vd~~~---~~~l~~~~~v~~~--Pt~~~--~G~--~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          169 TSKVIDASE---NQDLAEQFQVVGV--PKIVI--NKG--VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             EEEEEEGGG---CHHHHHHTTCCSS--SEEEE--GGG--TEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEEEEECCC---CHHHHHHcCCccc--CEEEE--CCE--EEEeeCCCCHHHHHHHHHHHhh
Confidence            999999998   6699999999999  99977  333  3457899999999999998865

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.2e-13  Score=105.02  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=84.5

Q ss_pred             CCCceEEeCCCcccccccCCC--ccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCC-
Q 021368           30 KLPLVTIFTRENAPSVFESPI--KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGIT-  104 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~~~--~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~-  104 (313)
                      ....+..++.++|+..+....  +++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.||+++   ++.++++|+|. 
T Consensus         5 ~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~   81 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR---YTDVSTRYKVST   81 (137)
T ss_dssp             CCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT---CHHHHHHTTCCC
T ss_pred             CCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc---CHHHHHHccCcc
Confidence            345688999999998775554  6788999999 9999999999999999986 79999999998   66999999998 


Q ss_pred             -----CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368          105 -----GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       105 -----~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                           ++  |+++++..|. ....+.|..+.+.|.+|+.+
T Consensus        82 ~~~~~~~--Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           82 SPLTKQL--PTLILFQGGK-EAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             CSSSSCS--SEEEEESSSS-EEEEESCBCSSSCBCCCCCC
T ss_pred             cCCcCCC--CEEEEEECCE-EEEEecCcCchHHHHHHHhc
Confidence                 88  9999997664 33446677666666555543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.31  E-value=1.8e-12  Score=101.42  Aligned_cols=101  Identities=13%  Similarity=0.081  Sum_probs=84.7

Q ss_pred             CCCcccccc--cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368           38 TRENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        38 t~~~~~~~~--~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      +.++|+..+  ..+.+++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||+++   ++.++++|+|.++  |+++++
T Consensus        10 ~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~---~~~l~~~~~v~~~--Pt~~~~   84 (149)
T 3gix_A           10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ---TAVYTQYFDISYI--PSTVFF   84 (149)
T ss_dssp             SHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTT---CCHHHHHTTCCSS--SEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCc---CHHHHHHcCCCcc--CeEEEE
Confidence            556677765  45678888999999 999999999999999999989999999988   6699999999999  998888


Q ss_pred             cCCCCce--------eccCC-CCCHHHHHHHHHHHhcC
Q 021368          115 GNDDAKK--------HILDG-ELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       115 ~~~~~~~--------~~~~g-~~~~~~i~~fi~~~~~~  143 (313)
                      ..|....        ..+.| ..+.+.|.++++..+.|
T Consensus        85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~  122 (149)
T 3gix_A           85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG  122 (149)
T ss_dssp             ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHH
T ss_pred             ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHH
Confidence            7664220        35678 88999999999988654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.31  E-value=3.2e-12  Score=100.54  Aligned_cols=96  Identities=16%  Similarity=0.289  Sum_probs=76.2

Q ss_pred             cChHHHhh---cCCCcEEEEEe-CCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCcc-------------ccc
Q 021368          168 NNFDEIVL---DESKDVLLEIY-APWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE-------------HHR  227 (313)
Q Consensus       168 ~~f~~~l~---~~~k~~lv~fy-~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~-------------~~~  227 (313)
                      .++.+.+.   ..+++++|+|| ++||++|+.+.+.+   .++...+..  ++.++.+|++...             ...
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~--~~~~v~vd~~~~~~~~~~~~~~~~~l~~~  111 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--HLHMVEVDFPQKNHQPEEQRQKNQELKAQ  111 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEECCSSCCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC--cEEEEEecCccccCCChhhHhhHHHHHHH
Confidence            34555442   34789999999 99999999999999   777666543  6899999998763             167


Q ss_pred             CCCCcCceEEEE-eCCCCCcCceeeccCc--CHHHHHHHHHhcCC
Q 021368          228 AKSDGFPTILFF-PAGNKSFDPINVDVDR--TVVALYKFLKKNAS  269 (313)
Q Consensus       228 ~~v~~~P~i~~~-~~g~~~~~~~~y~g~~--~~~~l~~fi~~~~~  269 (313)
                      |++.++|+++++ ++|+.+.   .+ |..  +.+.|.++|++.+.
T Consensus       112 ~~v~~~Pt~~~~d~~G~~~~---~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          112 YKVTGFPELVFIDAEGKQLA---RM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             TTCCSSSEEEEECTTCCEEE---EE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEEcCCCCEEE---Ee-cCCCCCHHHHHHHHHHHHh
Confidence            999999999999 6777653   56 876  89999999998754

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.31  E-value=3.9e-12  Score=96.26  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=84.4

Q ss_pred             CCceEEe-CCCccccccc----CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368           31 LPLVTIF-TRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        31 ~~~v~~l-t~~~~~~~~~----~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      ...+..+ +.++|+..+.    .+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||++.   ++.++++|+|.
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-v~~~~vd~d~---~~~l~~~~~v~   90 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDE---LKSVASDWAIQ   90 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT---SHHHHHHTTCC
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECcc---CHHHHHHcCCC
Confidence            3456667 5577777664    3667888999999 9999999999999999985 9999999998   66999999999


Q ss_pred             CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      ++  |+++++.+|. ....+.| .+.+.|.+++.+++
T Consensus        91 ~~--Pt~~~~~~G~-~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           91 AM--PTFMFLKEGK-ILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SS--SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             cc--CEEEEEECCE-EEEEEeC-CCHHHHHHHHHHhc
Confidence            99  9998886654 3334567 58999999998875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.30  E-value=2.5e-12  Score=99.72  Aligned_cols=101  Identities=7%  Similarity=-0.015  Sum_probs=81.4

Q ss_pred             CCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368           38 TRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        38 t~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      +.++|+..+.  .+.+++|.||++| ++|+.+.|.|.+++.++.+.+.|+.||+++   ++.++++|+|.++  |+++++
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~~~~~~i~~~--Pt~~~~   84 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE---VPDFNKMYELYDP--CTVMFF   84 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---CCTTTTSSCSCSS--CEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc---CHHHHHHcCCCCC--CEEEEE
Confidence            3455665432  4667888999999 999999999999999998889999999998   6699999999988  999998


Q ss_pred             cCCCCcee--------ccCCCCC-HHHHHHHHHHHhcC
Q 021368          115 GNDDAKKH--------ILDGELT-LDKIKTFGEDFLEG  143 (313)
Q Consensus       115 ~~~~~~~~--------~~~g~~~-~~~i~~fi~~~~~~  143 (313)
                      .+|.....        .+.|..+ .+.+.+++++.+.+
T Consensus        85 ~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           85 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence            77653221        3456564 89999999998764

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.30  E-value=1.5e-12  Score=100.00  Aligned_cols=103  Identities=13%  Similarity=0.143  Sum_probs=88.6

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeC---------CCcccccchhhh
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM---------DNEDVGKPVSEY  100 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~---------~~~~~~~~l~~~  100 (313)
                      ...+..++.++|+..+..  +++|.||++| ++|+.+.|.|.+++.+++  +.|+.||+         +.   ++.++++
T Consensus        15 ~~~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~---~~~l~~~   87 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSA---ARLEMNK   87 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHH---HHHHHHH
T ss_pred             cCceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhh---hHHHHHH
Confidence            346788899999988876  8888999999 999999999999999997  89999999         54   6799999


Q ss_pred             hCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          101 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       101 ~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      |||.++  |+++++++|. ....+.|..+.+.+..++++.+++
T Consensus        88 ~~v~~~--Pt~~~~~~G~-~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           88 AGVEGT--PTLVFYKEGR-IVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             HTCCSS--SEEEEEETTE-EEEEEESCCCHHHHHHHHHHHC--
T ss_pred             cCCcee--CeEEEEcCCE-EEEEEeCCCCHHHHHHHHHHHhCC
Confidence            999999  9999998654 345678999999999999998764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.29  E-value=2.4e-12  Score=94.05  Aligned_cols=97  Identities=13%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             CeEEE-cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------cccCCCCc-
Q 021368          161 DVKIV-VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------HHRAKSDG-  232 (313)
Q Consensus       161 ~v~~l-~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------~~~~~v~~-  232 (313)
                      ....| +.+.|++.+. .+++++|+|+|+||++|+.+.+.|++++..  .  ++.++.+|++.+.      ..+++|.+ 
T Consensus         7 ~~~~i~s~e~f~~ii~-~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~--~v~~~~vdVde~r~~Sn~IA~~~~V~h~   81 (112)
T 3iv4_A            7 VAIKLSSIDQFEQVIE-ENKYVFVLKHSETCPISANAYDQFNKFLYE--R--DMDGYYLIVQQERDLSDYIAKKTNVKHE   81 (112)
T ss_dssp             CEEECCSHHHHHHHHH-HCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H--TCCEEEEEGGGGHHHHHHHHHHHTCCCC
T ss_pred             ceeecCCHHHHHHHHh-cCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C--CceEEEEEeecCchhhHHHHHHhCCccC
Confidence            34555 3466777664 489999999999999999999999999984  2  6899999999884      26899995 


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      .|++++|++|..+.+  .-.+..+...|.+.+
T Consensus        82 sPq~il~k~G~~v~~--~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           82 SPQAFYFVNGEMVWN--RDHGDINVSSLAQAE  111 (112)
T ss_dssp             SSEEEEEETTEEEEE--EEGGGCSHHHHHHHT
T ss_pred             CCeEEEEECCEEEEE--eeccccCHHHHHHhh
Confidence            999999999998641  244677777776553

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.29  E-value=2.1e-12  Score=96.21  Aligned_cols=99  Identities=11%  Similarity=0.129  Sum_probs=81.1

Q ss_pred             ceEEeCC-CcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           33 LVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        33 ~v~~lt~-~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      .+..+++ ++++.++..+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|+|.++  |+
T Consensus        13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~---~~~l~~~~~v~~~--Pt   86 (114)
T 2oe3_A           13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDE---SPDIAKECEVTAM--PT   86 (114)
T ss_dssp             GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSB--SE
T ss_pred             heeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC---CHHHHHHCCCCcc--cE
Confidence            3444444 445666777778899999999 9999999999999999998 9999999998   6699999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      ++++.+|. ....+.|.. .+.|.+++.+
T Consensus        87 ~~~~~~G~-~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           87 FVLGKDGQ-LIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEEEETTE-EEEEEESSC-HHHHHHHHHT
T ss_pred             EEEEeCCe-EEEEEeCCC-HHHHHHHHHh
Confidence            98886654 334567777 8999998865

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.28  E-value=1.9e-11  Score=94.77  Aligned_cols=101  Identities=13%  Similarity=0.208  Sum_probs=81.6

Q ss_pred             EEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--------------------
Q 021368          163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--------------------  222 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--------------------  222 (313)
                      ..++++.+..... .+++++|+||++||++|+.+.+.+.+++..+.+.  +.++.++++.                    
T Consensus        15 ~~~~g~~~~~~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQLI-GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ--LNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--SEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhhc-CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC--cEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            5677877766543 5789999999999999999999999999999873  8888888653                    


Q ss_pred             -------ccc--ccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          223 -------NEH--HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       223 -------~~~--~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                             +..  ..|++.++|+++++ ++|..+.   .+.|..+.+.|.++|++.+.
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRH---FQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEE---EEESCSTTHHHHHHHHHHHT
T ss_pred             cceEECCchhHHHHhCCCCCCEEEEECCCCcEEE---EecCCCCHHHHHHHHHHHHh
Confidence                   111  57899999999999 5665543   67788888999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.27  E-value=4.9e-11  Score=112.12  Aligned_cols=176  Identities=14%  Similarity=0.108  Sum_probs=128.9

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ++.+.+|.+. ..|+++...+++++..- +++.+...+  +   . .       ...  |++.+.+.+....+.|.|-..
T Consensus        20 ~v~l~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~--~---~-~-------~~~--p~~~~~~~~~~~~i~f~g~p~   83 (521)
T 1hyu_A           20 PVELIATLDDSAKSAEIKELLAEIAELS-DKVTFKEDN--T---L-P-------VRK--PSFLITNPGSQQGPRFAGSPL   83 (521)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTC-TTEEEEECT--T---S-S-------SCS--SEEEEECTTCCCSCEEESCCC
T ss_pred             CEEEEEEeCCCcchHHHHHHHHHHHHhC-CceEEEEcC--C---c-c-------cCC--CEEEEecCCCcceEEEeccCc
Confidence            4445566666 67999999999987654 457764321  1   1 1       334  999888766556678889888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC
Q 021368          130 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG  209 (313)
Q Consensus       130 ~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~  209 (313)
                      -.++..|+..++.-.-               .-..++.+.++.+.....+..++.||++||++|+.+.+.+.+++..+. 
T Consensus        84 g~e~~s~~~~l~~~~~---------------~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-  147 (521)
T 1hyu_A           84 GHEFTSLVLALLWTGG---------------HPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-  147 (521)
T ss_dssp             GGGHHHHHHHHHHHTT---------------CCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-
T ss_pred             chhHHHHHHHHHhhcC---------------CCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-
Confidence            8888888887754111               112355556665543345677999999999999999999999998864 


Q ss_pred             CCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          210 VDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       210 ~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                        ++.+..+|.+.+..  .++++.++|++++  +|+.+     ..|....+.|.+|+...
T Consensus       148 --~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~-----~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          148 --RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF-----GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             --TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE-----EESCCCHHHHHHHHCCS
T ss_pred             --ceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEE-----ecCCCCHHHHHHHHhhc
Confidence              59999999998776  7899999999977  66553     44888889999998665

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.27  E-value=6.6e-12  Score=92.91  Aligned_cols=102  Identities=20%  Similarity=0.207  Sum_probs=83.5

Q ss_pred             ceEEe-CCCcccccccC----CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           33 LVTIF-TRENAPSVFES----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        33 ~v~~l-t~~~~~~~~~~----~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .+..+ +.++|++.+..    +..++|+||++| ++|+.+.|.|.+++.++.+ +.|+.||++.   ++.++++|||.++
T Consensus         5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~---~~~~~~~~~v~~~   80 (113)
T 1ti3_A            5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDE---LKAVAEEWNVEAM   80 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT---CHHHHHHHHCSST
T ss_pred             ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCC-cEEEEEEccc---cHHHHHhCCCCcc
Confidence            45555 55777776653    667888899999 9999999999999999985 9999999998   6699999999998


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+++++.+|. ....+.| .+.+.|.+++.+++.
T Consensus        81 --Pt~~~~~~G~-~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           81 --PTFIFLKDGK-LVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             --TEEEEEETTE-EEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             --cEEEEEeCCE-EEEEEec-CCHHHHHHHHHHhhc
Confidence              9998887654 2334566 688999999998864

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.27  E-value=1.5e-11  Score=93.91  Aligned_cols=99  Identities=20%  Similarity=0.353  Sum_probs=76.0

Q ss_pred             EEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-------------------
Q 021368          163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------------------  223 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------  223 (313)
                      ..++++.+.-... .+++++|+||++||++|+.+.+.+.+++.++.   ++.++.++++..                   
T Consensus        10 ~~~~g~~~~l~~~-~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   85 (136)
T 1lu4_A           10 TTLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLN   85 (136)
T ss_dssp             EBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEE
T ss_pred             ecCCCCeecHHHh-CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEEE
Confidence            3344444433222 57899999999999999999999999999986   588888888762                   


Q ss_pred             ---cc--ccCCCCcCceEEEEeCCCCCcCceeec---cCcCHHHHHHHHHhcC
Q 021368          224 ---EH--HRAKSDGFPTILFFPAGNKSFDPINVD---VDRTVVALYKFLKKNA  268 (313)
Q Consensus       224 ---~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~---g~~~~~~l~~fi~~~~  268 (313)
                         ..  ..|++.++|+++++..+..+ .  .+.   |..+.+.|.++|++.+
T Consensus        86 d~~~~~~~~~~i~~~P~~~lid~~G~i-~--~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           86 DADGVIWARYNVPWQPAFVFYRADGTS-T--FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             CTTSHHHHHTTCCSSSEEEEECTTSCE-E--EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCchhHHHhcCCCCCCEEEEECCCCcE-E--EEEcCCCccCHHHHHHHHHHHh
Confidence               22  57899999999999544433 2  677   8889999999998875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.92  E-value=4.2e-13  Score=98.03  Aligned_cols=101  Identities=23%  Similarity=0.240  Sum_probs=85.2

Q ss_pred             eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      +..++.+++...+ ..+..++|+||++| ++|+.+.|.|.+++.++.+.+.|+.+|++.   +..++++|||.++  |++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~v~~~--Pt~   77 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE---NPNTAAQYGIRSI--PTL   77 (106)
Confidence            5678888888644 55667888899999 999999999999999999889999999998   5699999999998  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +++.+|. ....+.|..+.+.|.+|+.+.
T Consensus        78 ~~~~~g~-~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           78 LLFKNGQ-VVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            8886553 344678888999999988764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.25  E-value=1e-11  Score=92.62  Aligned_cols=103  Identities=22%  Similarity=0.248  Sum_probs=85.3

Q ss_pred             CceEEe-CCCcccccccC----CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           32 PLVTIF-TRENAPSVFES----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        32 ~~v~~l-t~~~~~~~~~~----~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      +.+..+ +.++|+..+..    +...+|+||++| ++|+.+.|.|.+++.++.+ +.|+.||++.   ++.++++|+|.+
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~~~~---~~~~~~~~~v~~   81 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG-AIFLKVDVDE---LKDVAEAYNVEA   81 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---SHHHHHHTTCCS
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCC-cEEEEEEccc---CHHHHHHcCCCc
Confidence            456666 45778776654    668888999999 9999999999999999985 9999999998   669999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +  |+++++.+|. ....+.| .+.+.|.+++.++++
T Consensus        82 ~--Pt~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           82 M--PTFLFIKDGE-KVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             B--SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHHC
T ss_pred             C--cEEEEEeCCe-EEEEecC-CCHHHHHHHHHHHhc
Confidence            8  9998887654 2334566 589999999999875

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.25  E-value=1.8e-12  Score=97.07  Aligned_cols=103  Identities=11%  Similarity=0.139  Sum_probs=82.5

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc---cccchhhhhCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---VGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~---~~~~l~~~~~v~~~  106 (313)
                      ...+..++.+++...+..+..++|+||++| ++|+.+.|.|.+++.++...+.++  |++...   .++.++++|||.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~~~   88 (118)
T 1zma_A           11 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFI--NSEEPSQLNDLQAFRSRYGIPTV   88 (118)
T ss_dssp             TTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEE--ETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             HhhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEE--ECCCcCcHHHHHHHHHHcCCCCC
Confidence            345678888999888877788899999999 999999999999999987655554  444321   14578999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                        |+++++.+|. ....+.|..+.+.|.+|+.
T Consensus        89 --Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           89 --PGFVHITDGQ-INVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             --CEEEEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             --CeEEEEECCE-EEEEecCCCCHHHHHHHhh
Confidence              9999887664 3456789999999999885

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.25  E-value=2.6e-12  Score=94.41  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC------Cccc--ccCCCCcCceEEEEeCCCCCcCce
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT------TNEH--HRAKSDGFPTILFFPAGNKSFDPI  249 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~------~~~~--~~~~v~~~P~i~~~~~g~~~~~~~  249 (313)
                      ++.++|.||++||++|+.+.|.|.+++..+.        .+|++      .+..  ..|+|.++||+++  +|.      
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~------   75 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR------   75 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE------
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE------
Confidence            4667999999999999999999999986653        45555      2222  6899999999777  442      


Q ss_pred             eeccCcCHHHHHHHHHhc
Q 021368          250 NVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       250 ~y~g~~~~~~l~~fi~~~  267 (313)
                      .|.|..+.+.|.+|+.-.
T Consensus        76 ~~~G~~~~~~l~~~~~~~   93 (106)
T 3kp8_A           76 TYTGVRSLEALAVASGYP   93 (106)
T ss_dssp             EEESCCCHHHHHHHHTCC
T ss_pred             EecCCCCHHHHHHHhCCc
Confidence            589999999999998443

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.25  E-value=6.3e-12  Score=99.95  Aligned_cols=88  Identities=18%  Similarity=0.329  Sum_probs=66.9

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc---cccCCC--CcCceEEEE-eCCCCCcCce
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---HHRAKS--DGFPTILFF-PAGNKSFDPI  249 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---~~~~~v--~~~P~i~~~-~~g~~~~~~~  249 (313)
                      ..+++++|+||++||++|+.+.|.|.+++..+..  .+.|+.+|++.+.   ...+++  .++|++++| ++|+.+.   
T Consensus        44 ~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~---  118 (164)
T 1sen_A           44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP---  118 (164)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT---
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEE---
Confidence            4679999999999999999999999998776543  2344455555442   356776  669999999 6787764   


Q ss_pred             eecc----------CcCHHHHHHHHHhcC
Q 021368          250 NVDV----------DRTVVALYKFLKKNA  268 (313)
Q Consensus       250 ~y~g----------~~~~~~l~~fi~~~~  268 (313)
                      ++.|          ..+.+.|.++|++.+
T Consensus       119 ~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          119 EIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             TCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             EEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            4555          378899999998875

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.24  E-value=2.1e-11  Score=96.43  Aligned_cols=104  Identities=18%  Similarity=0.294  Sum_probs=81.3

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC----------
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----------  228 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~----------  228 (313)
                      .+..++++.+.-.-. .+++++|+||++||++|+.+.+.+.++..++++. ++.++.++++....  ..+          
T Consensus        18 ~l~~~~g~~~~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~   95 (165)
T 3or5_A           18 SGVTVDGKPFSSASL-KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR-GFTFVGIAVNEQLPNVKNYMKTQGIIYPV   95 (165)
T ss_dssp             EEECTTSCEEEGGGG-TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-TEEEEEEECSCCHHHHHHHHHHHTCCSCE
T ss_pred             eeeCCCCCEechhHc-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCCce
Confidence            344455555443322 5789999999999999999999999999999864 59999999886543  333          


Q ss_pred             -----------------CCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          229 -----------------KSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       229 -----------------~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                                       ++.++|+++++ ++|..+.   .+.|..+.+.|.++|.+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l~  151 (165)
T 3or5_A           96 MMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSG---VIVGPRSKADFDRIVKMALG  151 (165)
T ss_dssp             EECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEE---EECSCCCHHHHHHHHHHHHC
T ss_pred             EecCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHHh
Confidence                             78999999999 5555543   78898899999999999865

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.24  E-value=2.2e-11  Score=95.12  Aligned_cols=95  Identities=14%  Similarity=0.207  Sum_probs=66.1

Q ss_pred             ChHHHh---hcCCCcEEEEEeCCCCccchhhhHHHHHHHH---HhcCCCcEEEEEEeCCCcc-cccCCCCcCceEEEEe-
Q 021368          169 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFP-  240 (313)
Q Consensus       169 ~f~~~l---~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~---~~~~~~~v~~~~vd~~~~~-~~~~~v~~~P~i~~~~-  240 (313)
                      ++++.+   ...+++++|+|||+||++|+.+.+.+.....   ....  ++..+.+|.+... ...+++.++||+++|. 
T Consensus        32 ~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~--~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~  109 (151)
T 3ph9_A           32 TYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN--KFIMLNLMHETTDKNLSPDGQYVPRIMFVDP  109 (151)
T ss_dssp             SHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH--TCEEEEESSCCSCGGGCTTCCCSSEEEEECT
T ss_pred             CHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc--CeEEEEecCCchhhHhhcCCCCCCEEEEECC
Confidence            444443   3468999999999999999999999886432   2221  3555555522222 2678999999999997 


Q ss_pred             CCCCCcCceeeccC----------cCHHHHHHHHHhcC
Q 021368          241 AGNKSFDPINVDVD----------RTVVALYKFLKKNA  268 (313)
Q Consensus       241 ~g~~~~~~~~y~g~----------~~~~~l~~fi~~~~  268 (313)
                      +|+.+.   ++.|.          .+...+++.+++.+
T Consensus       110 ~G~~v~---~~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          110 SLTVRA---DIAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             TSCBCT---TCCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             CCCEEE---EEeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            788775   44554          45677877777653

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.24  E-value=2.9e-11  Score=92.19  Aligned_cols=101  Identities=21%  Similarity=0.306  Sum_probs=77.5

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------------------
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------  223 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------------------  223 (313)
                      +..++++.+.-... .+++++|+||++||++|+.+.+.+.++...+.   ++.++.++++..                  
T Consensus        10 ~~~~~g~~~~l~~~-~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (136)
T 1zzo_A           10 AKTLDGHDFHGESL-LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ   85 (136)
T ss_dssp             EEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEE
T ss_pred             cccCCCCEeeHHHh-CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEE
Confidence            44445555544332 57899999999999999999999999999986   588888887542                  


Q ss_pred             -----cc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          224 -----EH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       224 -----~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                           ..  ..|++.++|+++++..+..+ .  .+.|..+.+.|.++|.+.+.
T Consensus        86 ~~d~~~~~~~~~~i~~~P~~~~id~~g~i-~--~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           86 LADTDGSVWANFGVTQQPAYAFVDPHGNV-D--VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             EECTTCHHHHHTTCCSSSEEEEECTTCCE-E--EEESCCCHHHHHHHHHHHC-
T ss_pred             EEcCCcHHHHHcCCCCCceEEEECCCCCE-E--EEecCCCHHHHHHHHHHHhc
Confidence                 11  57899999999999644432 1  68898899999999998763

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.23  E-value=5.8e-11  Score=83.01  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ..+++||++| ++|+.+.|.|++++.++.+.+.|+.+|+++   ++.+++++||.++  |++++  +|.  . .+.|..+
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~--~G~--~-~~~G~~~   73 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME---NPQKAMEYGIMAV--PTIVI--NGD--V-EFIGAPT   73 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS---SCCTTTSTTTCCS--SEEEE--TTE--E-ECCSSSS
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHCCCccc--CEEEE--CCE--E-eeecCCC
Confidence            4678899999 999999999999999999889999999998   5699999999998  99977  332  2 6788889


Q ss_pred             HHHHHHHHHHHh
Q 021368          130 LDKIKTFGEDFL  141 (313)
Q Consensus       130 ~~~i~~fi~~~~  141 (313)
                      .+.|.+++++.+
T Consensus        74 ~~~l~~~l~~~l   85 (85)
T 1fo5_A           74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998753

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.23  E-value=9.2e-12  Score=95.39  Aligned_cols=104  Identities=13%  Similarity=0.168  Sum_probs=83.7

Q ss_pred             CCceEEeCC-CcccccccCC--CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           31 LPLVTIFTR-ENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~-~~~~~~~~~~--~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ...+..++. +++..++...  ..++|.||++| ++|+.+.|.|.+++.++  .+.|+.||++.   +..++++|||.++
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~---~~~l~~~~~v~~~   93 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDI---HPKLNDQHNIKAL   93 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTT---CHHHHHHTTCCSS
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccc---hHHHHHhcCCCCC
Confidence            345777775 7777766543  47788899999 99999999999999988  59999999998   6699999999999


Q ss_pred             CCcEEEEEc--CCCC-ceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTG--NDDA-KKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~--~~~~-~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+++++.  +|.+ ....+.|. +.+.|.+++.+.+.
T Consensus        94 --Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           94 --PTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             --SEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             --CEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence              9998884  4431 23445676 89999999999865

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=92.01  Aligned_cols=99  Identities=10%  Similarity=0.008  Sum_probs=79.6

Q ss_pred             CceEEeCCCcccccccCCC---ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIFTRENAPSVFESPI---KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~---~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      +.+.+++.++|.+.+....   .++|.||++| ++|+.+.|.|+++|.++.+ +.|+.||+++   .   ..+|+|++. 
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~-v~f~kvd~d~---~---~~~~~v~~~-   74 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKAIVNS---C---IQHYHDNCL-   74 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT-SEEEEEEGGG---T---STTCCGGGC-
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-CEEEEEEhHH---h---HHHCCCCCC-
Confidence            4578889999988554332   6778899999 9999999999999999987 9999999986   2   488999988 


Q ss_pred             CcEEEEEcCCCCceeccCC-------CCCHHHHHHHHHHH
Q 021368          108 PKVLAYTGNDDAKKHILDG-------ELTLDKIKTFGEDF  140 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g-------~~~~~~i~~fi~~~  140 (313)
                       ||+++|++|... ..+.|       ..+.+.|..++.+.
T Consensus        75 -PT~~~fk~G~~v-~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           75 -PTIFVYKNGQIE-AKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             -SEEEEEETTEEE-EEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             -CEEEEEECCEEE-EEEeChhhhCCCCCCHHHHHHHHHHc
Confidence             999999987632 12222       46899999998774

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.22  E-value=1.3e-11  Score=95.10  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             ceEEe-CCCccccccc----CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           33 LVTIF-TRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        33 ~v~~l-t~~~~~~~~~----~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .+..+ +.++|.+.+.    .+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.++++|||.++
T Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~-v~~~~v~~~~---~~~~~~~~~v~~~  100 (139)
T 3d22_A           25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS-LMFLVIDVDE---LSDFSASWEIKAT  100 (139)
T ss_dssp             TCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---SHHHHHHTTCCEE
T ss_pred             cEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEeCcc---cHHHHHHcCCCcc
Confidence            34455 4677877653    4667889999999 9999999999999999975 9999999998   6699999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                        |+++++.+|. ....+.|. +.+.|.+++.+++.+
T Consensus       101 --Pt~~~~~~G~-~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          101 --PTFFFLRDGQ-QVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             --SEEEEEETTE-EEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             --cEEEEEcCCe-EEEEEeCC-CHHHHHHHHHHHhcc
Confidence              9998886554 33455676 899999999999874

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.21  E-value=5.5e-12  Score=115.29  Aligned_cols=107  Identities=13%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             CCceEEeCCCcccccccCC--CccEEEEEeeC-CchhhhhHHHHHHHHhcc---C-----eEEEEEEeCCCcccccchhh
Q 021368           31 LPLVTIFTRENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---G-----KLIFVYVQMDNEDVGKPVSE   99 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~--~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~---~-----~v~f~~vd~~~~~~~~~l~~   99 (313)
                      ...|..++.++|+.++...  .+++|.||++| ++|+.+.|.|.+++.++.   +     .+.|+.|||+.   ++.+|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~---~~~la~   98 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS---EVDLCR   98 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT---CHHHHH
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC---CHHHHH
Confidence            3468999999999987654  46888999999 999999999999999998   3     59999999998   679999


Q ss_pred             hhCCCCCCCcEEEEEcCCC-CceeccCCC------------CCHHHHHHHHHHHhc
Q 021368          100 YFGITGEAPKVLAYTGNDD-AKKHILDGE------------LTLDKIKTFGEDFLE  142 (313)
Q Consensus       100 ~~~v~~~~~P~i~~~~~~~-~~~~~~~g~------------~~~~~i~~fi~~~~~  142 (313)
                      +|+|.++  |++++|..++ .....|.|.            ++.+++...++.+++
T Consensus        99 ~y~V~~~--PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Lin  152 (470)
T 3qcp_A           99 KYDINFV--PRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVN  152 (470)
T ss_dssp             HTTCCSS--CEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHH
T ss_pred             HcCCCcc--CeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence            9999999  9999886544 234456665            344556666555544

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.21  E-value=1e-11  Score=93.06  Aligned_cols=103  Identities=18%  Similarity=0.240  Sum_probs=81.1

Q ss_pred             CceEEe--CCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIF--TRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~l--t~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      +.+..+  +.++|.+ +...+..++|.||++| ++|+.+.|.|.+++.++ +.+.|+.||++.   ++.++++|+|.++ 
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~---~~~~~~~~~i~~~-   77 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDK---NGNAADAYGVSSI-   77 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCC---CHHHHHhcCCCCC-
Confidence            445666  5667774 4455678889999999 99999999999999999 569999999998   6699999999998 


Q ss_pred             CcEEEEEcC----CCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          108 PKVLAYTGN----DDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       108 ~P~i~~~~~----~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       |++++++.    |. ....+.|.. .++|.+.+.++..
T Consensus        78 -Pt~~~~~~~~~~G~-~~~~~~G~~-~~~l~~~~~~~~~  113 (118)
T 2f51_A           78 -PALFFVKKEGNEIK-TLDQFVGAD-VSRIKADIEKFKH  113 (118)
T ss_dssp             -SEEEEEEEETTEEE-EEEEEESCC-HHHHHHHHHHHC-
T ss_pred             -CEEEEEeCCCCcce-EEEeecCCC-HHHHHHHHHHhhh
Confidence             99999876    32 233456654 5569999988753

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.21  E-value=1.7e-11  Score=93.17  Aligned_cols=106  Identities=13%  Similarity=0.135  Sum_probs=86.4

Q ss_pred             EEeCCCcccccc----cCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           35 TIFTRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        35 ~~lt~~~~~~~~----~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ..++..+|++.+    ..+..++|.||++| ++|+.+.|.+   ..++..+.+.+.++.||++... +..++++|||.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~   87 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE-GVELRKKYGVHAY   87 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTT-HHHHHHHTTCCSS
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcc-hHHHHHHcCCCCC
Confidence            345777787755    25668889999999 9999999999   7788887777999999998533 6789999999998


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                        |++++++.++.....+.|..+.+.|.+|+.+.+..
T Consensus        88 --Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           88 --PTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             --CEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             --CEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence              99999954444455678999999999999998763

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.20  E-value=2.1e-11  Score=83.74  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=60.1

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeeccCc-CHHH
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDR-TVVA  259 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~-~~~~  259 (313)
                      ..|.||++||++|+.+.+.+.+++..+..  .+.++.+| +.....++++.++|++++  +|+.+     +.|.. +.+.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~~v~-~~~~~~~~~v~~~Pt~~~--~G~~~-----~~G~~~~~~~   71 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK-EMDQILEAGLTALPGLAV--DGELK-----IMGRVASKEE   71 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC-SHHHHHHHTCSSSSCEEE--TTEEE-----ECSSCCCHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC--ceEEEEec-CHHHHHHCCCCcCCEEEE--CCEEE-----EcCCCCCHHH
Confidence            46899999999999999999999999875  68899998 222237899999999998  66543     33876 8898


Q ss_pred             HHHHH
Q 021368          260 LYKFL  264 (313)
Q Consensus       260 l~~fi  264 (313)
                      |.+||
T Consensus        72 l~~~l   76 (77)
T 1ilo_A           72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            88876

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.20  E-value=4.5e-11  Score=93.28  Aligned_cols=89  Identities=18%  Similarity=0.341  Sum_probs=74.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------cccCCCCc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------HHRAKSDG  232 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------~~~~~v~~  232 (313)
                      .+++++|+||++||++|+.+.+.+.++...+... ++.++.++++...                        ...|++.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence            4789999999999999999999999999999763 5888888876531                        15789999


Q ss_pred             CceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          233 FPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       233 ~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|+++++ ++|..+.   .+.|..+.+.|.++|.+.+.
T Consensus       104 ~P~~~lid~~G~i~~---~~~G~~~~~~l~~~l~~ll~  138 (151)
T 2f9s_A          104 LPTTFLINPEGKVVK---VVTGTMTESMIHDYMNLIKP  138 (151)
T ss_dssp             SCEEEEECTTSEEEE---EEESCCCHHHHHHHHHHHSC
T ss_pred             CCeEEEECCCCcEEE---EEeCCCCHHHHHHHHHHHHh
Confidence            9999999 5666543   67788899999999999864

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.19  E-value=4.6e-11  Score=92.15  Aligned_cols=84  Identities=13%  Similarity=0.260  Sum_probs=70.8

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-------------------------ccc--ccCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------------------------NEH--HRAK  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------------~~~--~~~~  229 (313)
                      .+++++|+||++||++|+.+.+.+.++..++... ++.++.++++.                         +..  ..|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD-SVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS-SEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC-CEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            5789999999999999999999999999999843 68999998864                         111  6789


Q ss_pred             CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHH
Q 021368          230 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       230 v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      +.++|+++++ ++|..+.   .+.|..+.+.|.++|
T Consensus       112 v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 IITIPTSFLLNEKGEIEK---TKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CCEESEEEEECTTCCEEE---EEESCCCHHHHHHHH
T ss_pred             cCccCeEEEEcCCCcEEE---EEcCCcCHHHHHHhh
Confidence            9999999999 5666543   788989999999887

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.19  E-value=4.7e-11  Score=93.25  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=72.9

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------------------------cccCC-
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------------HHRAK-  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------------------~~~~~-  229 (313)
                      .+++++|+||++||++|+.+.+.+.++..+++.. ++.++.++++...                          ...|+ 
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG-SVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-TEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            5789999999999999999999999999998653 6999999986311                          04567 


Q ss_pred             -CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          230 -SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       230 -v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                       +.++|+++++ ++|..+.   .+.|..+.+.|.++|++...
T Consensus       102 ~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~l~~  140 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQ---TITGEVNEKSLTDAVKLAHS  140 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEE---ECCSCCCHHHHHHHHHHHHT
T ss_pred             ccCCCCEEEEECCCCcEEE---EECCCCCHHHHHHHHHHHHH
Confidence             8999999999 4565543   78899999999999988753

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.19  E-value=9e-11  Score=90.08  Aligned_cols=100  Identities=11%  Similarity=0.027  Sum_probs=80.7

Q ss_pred             CCceEEeCCCcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ...+.+++.++|...+...   ..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.||+++.   .   ++|+|.++
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~-v~~~~vd~~~~---~---~~~~i~~~   81 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE-TKFVKAIVNSC---I---EHYHDNCL   81 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSS-EEEEEECCSSS---C---SSCCSSCC
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-cEEEEEEhhcC---c---ccCCCCCC
Confidence            4567888888888866432   46788899999 9999999999999999975 99999999873   2   78999998


Q ss_pred             CCcEEEEEcCCCCceeccCCC-------CCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGE-------LTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~-------~~~~~i~~fi~~~  140 (313)
                        |++++|.+|... ..+.|.       .+.+.|.+++.+.
T Consensus        82 --Pt~~~~~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           82 --PTIFVYKNGQIE-GKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             --SEEEEESSSSCS-EEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             --CEEEEEECCEEE-EEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence              999999876532 233443       3789999999987

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.18  E-value=3.4e-11  Score=95.22  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=79.9

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC------------------
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------------------  222 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~------------------  222 (313)
                      .+..++++.+.... ..+++++|+||++||++|+.+.+.+.+++.+++.. ++.+..++++.                  
T Consensus        22 ~l~~~~g~~~~~~~-~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           22 TMKTADNRPASVYL-KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TCEETTSSBGGGGC-CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             ccCCCCCCEeeHHH-hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence            45667777666543 35789999999999999999999999999987643 46666565421                  


Q ss_pred             ----------ccc--ccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          223 ----------NEH--HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       223 ----------~~~--~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                                +..  ..|++.++|+++++ ++|..+.   .+.|..+.+.|.++|.+.+..
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~~~~~  157 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQR---IVKGSINEAQALALIRNPNAD  157 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEE---EEESCCCHHHHHHHHHCTTCC
T ss_pred             CCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHHHH
Confidence                      111  46789999999999 5666543   678988999999999988653

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.18  E-value=4.6e-11  Score=83.55  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=70.7

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ..++.||++| ++|+.+.|.|.+++.++.+.+.|+.+|+++   ++.+++++||.++  |++++  +|.  . .+.|..+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~--~G~--~-~~~G~~~   72 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV---DREKAIEYGLMAV--PAIAI--NGV--V-RFVGAPS   72 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT---CGGGGGGTCSSCS--SEEEE--TTT--E-EEECSSC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC---CHHHHHhCCceee--CEEEE--CCE--E-EEccCCC
Confidence            3578899999 999999999999999999889999999998   6699999999998  99977  333  2 5678889


Q ss_pred             HHHHHHHHHHHh
Q 021368          130 LDKIKTFGEDFL  141 (313)
Q Consensus       130 ~~~i~~fi~~~~  141 (313)
                      .+.|.+++.+.+
T Consensus        73 ~~~l~~~l~~~l   84 (85)
T 1nho_A           73 REELFEAINDEM   84 (85)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.17  E-value=7.9e-11  Score=91.86  Aligned_cols=90  Identities=16%  Similarity=0.349  Sum_probs=74.7

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-----------------------c--ccCCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------H--HRAKSD  231 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------------~--~~~~v~  231 (313)
                      .+++++|+||++||++|+.+.+.+.++...+.+. ++.++.++++...                       .  ..|++.
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN  107 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS-SEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC-CeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC
Confidence            4689999999999999999999999999998763 5889999888753                       1  468999


Q ss_pred             cCceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          232 GFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       232 ~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      ++|+++++. +|..+.   .+.|..+.+.|.++|++.++.
T Consensus       108 ~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~~~~  144 (152)
T 2lja_A          108 GIPRFILLDRDGKIIS---ANMTRPSDPKTAEKFNELLGL  144 (152)
T ss_dssp             SSCCEEEECTTSCEEE---SSCCCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCeEEE---ccCCCCCHHHHHHHHHHHhcc
Confidence            999999996 666543   566778889999999988654

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.16  E-value=3.5e-11  Score=90.80  Aligned_cols=101  Identities=17%  Similarity=0.148  Sum_probs=80.8

Q ss_pred             CceEEeCCCcccccccC--CCccEEEEEee-------C-CchhhhhHHHHHHHHhccCeEEEEEEeC-------CCcccc
Q 021368           32 PLVTIFTRENAPSVFES--PIKNQLLLFAV-------S-NDSEKLLPVFEEAAKSFKGKLIFVYVQM-------DNEDVG   94 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~--~~~~~v~f~~~-------~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~-------~~~~~~   94 (313)
                      ..+...+.++|...+..  +.+++|.||++       | ++|+.+.|.|.+++.++.+.+.|+.||+       +.   +
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~---~   81 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDP---N   81 (123)
T ss_dssp             EEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCT---T
T ss_pred             eeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhch---h
Confidence            34566777788876654  67888899999       9 9999999999999999987899999999       45   6


Q ss_pred             cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368           95 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus        95 ~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      +.++++|+|.++  |++++++++. ....+.| .+.+.|.+|+.+
T Consensus        82 ~~~~~~~~i~~~--Pt~~~~~~~~-~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           82 NDFRKNLKVTAV--PTLLKYGTPQ-KLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             CHHHHHHCCCSS--SEEEETTSSC-EEEGGGG-GCHHHHHHHHHC
T ss_pred             HHHHHHCCCCee--CEEEEEcCCc-eEecccc-CCHHHHHHHHhc
Confidence            689999999999  9999997743 2222233 577888888864

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.16  E-value=1.1e-10  Score=90.01  Aligned_cols=86  Identities=17%  Similarity=0.367  Sum_probs=68.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHH---HHHHhcCCCcEEEEEEeCCCccc--------------------------cc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTNEH--------------------------HR  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~---la~~~~~~~~v~~~~vd~~~~~~--------------------------~~  227 (313)
                      .+++++|+||++||++|+.+.+.+.+   +...+++. ++.+..++++....                          ..
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG-TLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT-SEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC-CeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            47899999999999999999999988   88888653 58888888875432                          27


Q ss_pred             CCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          228 AKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       228 ~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      |++.++|+++++.....+    .+ +..+.+.|.++|.+..
T Consensus       105 ~~v~~~P~~~lid~~G~i----~~-~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          105 YDIRATPTIYLLDGRKRV----IL-KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             SCCCSSSEEEEECTTCBE----EE-CSCCHHHHHHHHHC--
T ss_pred             cCCCCCCeEEEECCCCCE----Ee-cCCCHHHHHHHHHHHc
Confidence            899999999999544442    33 5578999999998764

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.16  E-value=1.3e-10  Score=94.11  Aligned_cols=137  Identities=15%  Similarity=0.236  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhc
Q 021368          129 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR  208 (313)
Q Consensus       129 ~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~  208 (313)
                      ....+.+|+..+..|.+...........-++..+..++++.+.-.- -.+++++|+||++||++|..+.+.+.++..+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~f~l~~~~G~~~~l~~-~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~   90 (186)
T 1jfu_A           12 AAVATAQKIAPLAHGEVAALTMASAPLKLPDLAFEDADGKPKKLSD-FRGKTLLVNLWATWCVPCRKEMPALDELQGKLS   90 (186)
T ss_dssp             HHHHHHHHHGGGCCGGGTTCEECCSCCBCCCCEEECTTSCEEEGGG-GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhcchhhcchhhhhccccCCCcCCCcEeEcCCCCEeeHHH-cCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhc
Confidence            4567788888888877765544333222223333344444332211 147899999999999999999999999999997


Q ss_pred             CCCcEEEEEEeCCCcc--c-----ccCCCC-----------------------cCceEEEE-eCCCCCcCceeeccCc--
Q 021368          209 GVDSIVIAKMDGTTNE--H-----HRAKSD-----------------------GFPTILFF-PAGNKSFDPINVDVDR--  255 (313)
Q Consensus       209 ~~~~v~~~~vd~~~~~--~-----~~~~v~-----------------------~~P~i~~~-~~g~~~~~~~~y~g~~--  255 (313)
                      .. ++.++.|+++...  .     .++++.                       ++|+++++ ++|+.+.   .+.|..  
T Consensus        91 ~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~---~~~g~~~~  166 (186)
T 1jfu_A           91 GP-NFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIA---TIAGPAEW  166 (186)
T ss_dssp             BT-TEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEE---EEESCCCT
T ss_pred             cC-CcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEE---EEecCCcc
Confidence            43 6888888887641  1     334442                       89999999 5565543   677754  


Q ss_pred             CHHHHHHHHHhcCCC
Q 021368          256 TVVALYKFLKKNASI  270 (313)
Q Consensus       256 ~~~~l~~fi~~~~~~  270 (313)
                      +.+.|.++|.+.+..
T Consensus       167 ~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          167 ASEDALKLIRAATGK  181 (186)
T ss_dssp             TSHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHhcc
Confidence            478899999988654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.16  E-value=2.1e-11  Score=96.94  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=59.1

Q ss_pred             cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCC---CCcCceEEEEe
Q 021368          166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAK---SDGFPTILFFP  240 (313)
Q Consensus       166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~---v~~~P~i~~~~  240 (313)
                      +.+.+..+..-.+++++|.||++||++|+.+.|.+.+++..+.   ++.+..+|.+.+..  ..|.   +.++||+++|.
T Consensus        42 ~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~  118 (167)
T 1z6n_A           42 PSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLVLD  118 (167)
T ss_dssp             CHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEEC
T ss_pred             CHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEEC
Confidence            3334443322246789999999999999999999999998764   58899998877654  5665   99999999998


Q ss_pred             CCCC
Q 021368          241 AGNK  244 (313)
Q Consensus       241 ~g~~  244 (313)
                      +|..
T Consensus       119 ~~G~  122 (167)
T 1z6n_A          119 EEFN  122 (167)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            8643

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.15  E-value=7.8e-11  Score=92.14  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=70.2

Q ss_pred             CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC---------------------------Cccc--ccCC
Q 021368          179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------------------------TNEH--HRAK  229 (313)
Q Consensus       179 k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------------~~~~--~~~~  229 (313)
                      ++++|+||++||++|+.+.+.+.++..++    ++.++.++++                           ....  ..|+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            89999999999999999999999999999    3677777771                           1111  6789


Q ss_pred             CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          230 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       230 v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      +.++|+++++ ++|..+.   .+.|..+.+.|.++|++++..
T Consensus       107 v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~~~~  145 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVA---LFAGRAGREALLDALLLAGAD  145 (154)
T ss_dssp             BCSSCEEEEECTTSEEEE---EEESBCCHHHHHHHHHHTTCC
T ss_pred             CCcccEEEEECCCCCEEE---EEcCCCCHHHHHHHHHhccCc
Confidence            9999998888 5666543   788888999999999999754

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.15  E-value=1.8e-10  Score=89.87  Aligned_cols=89  Identities=15%  Similarity=0.226  Sum_probs=72.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------ccc--ccCCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------NEH--HRAKSD  231 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~~~--~~~~v~  231 (313)
                      .+++++|+||++||++|+.+.+.+.+++..+... ++.+..++.+.                       +..  ..|++.
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  105 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ  105 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT-TEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence            5789999999999999999999999999999864 57777666431                       111  567999


Q ss_pred             cCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          232 GFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       232 ~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++|+++++ ++|..+.   .|.|..+.+.|.++|.+.+.
T Consensus       106 ~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A          106 VYPTSVLIGKKGEILK---TYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             SSSEEEEECSSSCCCE---EEESSCCHHHHHHHHHHHHH
T ss_pred             ccCeEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHHH
Confidence            99999999 5666543   78898899999999998854

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.13  E-value=2.6e-10  Score=88.24  Aligned_cols=86  Identities=17%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHh-cCCCcEEEEEEeCCCcc-------------------------c--ccC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGTTNE-------------------------H--HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~-~~~~~v~~~~vd~~~~~-------------------------~--~~~  228 (313)
                      .+++++|+||++||++|+.+.+.+.++..++ .. .++.++.++++...                         .  ..|
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQY  110 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC-TTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhc
Confidence            5789999999999999999999999999999 54 35889989887643                         1  678


Q ss_pred             CCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          229 KSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       229 ~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++.++|+++++ ++|..+     +... +.+.|.++|.+.+.
T Consensus       111 ~v~~~P~~~lid~~G~i~-----~~~~-~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          111 AILTLPTNILLSPTGKIL-----ARDI-QGEALTGKLKELLK  146 (148)
T ss_dssp             TCCSSSEEEEECTTSBEE-----EESC-CHHHHHHHHHHHC-
T ss_pred             CCCCcCEEEEECCCCeEE-----EecC-CHHHHHHHHHHHHc
Confidence            99999999999 455543     2222 88889999988764

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.13  E-value=1.4e-10  Score=88.27  Aligned_cols=86  Identities=22%  Similarity=0.303  Sum_probs=69.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC----------------------------c--ccc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------N--EHH  226 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~--~~~  226 (313)
                      .+++++|+||++||++|+.+.+.+.++..++..  ++.+..+++..                            +  ...
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLE   98 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHH
Confidence            578999999999999999999999999998654  68888885422                            1  115


Q ss_pred             cCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          227 RAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       227 ~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      .|++.++|+++++ ++|..+.   .+.|..+.+.|.++|++.
T Consensus        99 ~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           99 TYGVRSYPTQAFIDKEGKLVK---THPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HTTCCSSSEEEEECTTCCEEE---EEESCCCHHHHHHHHHHC
T ss_pred             HcCcccCCeEEEECCCCcEEE---eecCCCcHHHHHHHHHhh
Confidence            7899999999999 5666543   788988999999999764

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.13  E-value=1.9e-10  Score=90.51  Aligned_cols=89  Identities=16%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             CCCcEEEEEeCCCCccchh-hhHHHHHHHHHhcCCCcEEEEEEeCC----------------------------C--c--
Q 021368          177 ESKDVLLEIYAPWCGHCQA-FEPTYNKLAKHLRGVDSIVIAKMDGT----------------------------T--N--  223 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~-~~~~~~~la~~~~~~~~v~~~~vd~~----------------------------~--~--  223 (313)
                      .+++++|+||++||++|+. +.+.+.++..++++. ++.++.++++                            .  .  
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  107 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQ  107 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccc
Confidence            4789999999999999999 699999999999864 5888888763                            1  1  


Q ss_pred             ----ccccCCCCcCceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          224 ----EHHRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       224 ----~~~~~~v~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                          ....|++.++|+++++. +|..+.   .+.|..+.+.|.++|.+.+.
T Consensus       108 ~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          108 RIPSTMKKYRLEGTPSIILADRKGRIRQ---VQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSBEEE---EEESCCCHHHHHHHHHHHHT
T ss_pred             hhhhHHHhcccCccceEEEECCCCcEEE---EecCcCCHHHHHHHHHHHHh
Confidence                12468899999999995 565543   77898899999999998864

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.12  E-value=1.6e-10  Score=90.72  Aligned_cols=89  Identities=15%  Similarity=0.188  Sum_probs=72.5

Q ss_pred             CCCcEEEEEeCCCCccchhh-hHHHHHHHHHhcCCCcEEEEEEeCCC----------------------------c----
Q 021368          177 ESKDVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------N----  223 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~-~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------~----  223 (313)
                      .+++++|+||++||++|+.. ++.+.++..++++. ++.++.++++.                            .    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED-KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC-CEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            47899999999999999996 99999999999854 58888887631                            1    


Q ss_pred             ---ccccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          224 ---EHHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       224 ---~~~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                         ....|++.++|+++++ ++|..+.   .+.|..+.+.|.++|.+.+.
T Consensus       106 ~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          106 MPRTMAAYQMRGTPSLLLIDKAGDLRA---HHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSEEEE---EEESCCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCEEE---EEeCCCCHHHHHHHHHHHhc
Confidence               1146899999999999 4565543   77888899999999998864

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.12  E-value=7.9e-11  Score=89.92  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHHH--HHHHhccCeEEEEEEeCCCcccccchhhhhCC---CCCCCcEEEEEcCCCCc
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVFE--EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI---TGEAPKVLAYTGNDDAK  120 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~~--~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v---~~~~~P~i~~~~~~~~~  120 (313)
                      ..+.+++|.||++| ++|+.+.|.|.  +++..+.+.+.|+.||++..+.++.++++|||   .++  |++++++.++..
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~--Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI--PAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCS--SEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCcc--ceEEEECCCCCE
Confidence            34668889999999 99999999999  99999987899999999332227799999999   988  999999554444


Q ss_pred             eeccCC-------CCCHHHHHHHHHHHh
Q 021368          121 KHILDG-------ELTLDKIKTFGEDFL  141 (313)
Q Consensus       121 ~~~~~g-------~~~~~~i~~fi~~~~  141 (313)
                      ...+.|       ..+.+.+.+|+.++.
T Consensus       105 ~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          105 RYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEEecCCcccccccCCHHHHHHHHHHhc
Confidence            455556       578999999998763

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.11  E-value=2.2e-11  Score=92.50  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=84.5

Q ss_pred             CceEEe-CCCccccccc----CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           32 PLVTIF-TRENAPSVFE----SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        32 ~~v~~l-t~~~~~~~~~----~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      +.+..+ +.++|+..+.    .+...+|+||++| ++|+.+.|.|.+++.++.+ +.|+.||++.   ++.++++|+|.+
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~v~~~~---~~~~~~~~~v~~   89 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG-AVFLKVDVDE---LKEVAEKYNVEA   89 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTT-BCCEECCTTT---SGGGHHHHTCCS
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCC-CEEEEEeccc---hHHHHHHcCCCc
Confidence            345566 4466776554    3668899999999 9999999999999999985 9999999998   669999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      +  |+++++.+|. ....+.| .+.+.|.+++.+++..
T Consensus        90 ~--Pt~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           90 M--PTFLFIKDGA-EADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             S--CCCCBCTTTT-CCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             c--ceEEEEeCCe-EEEEEeC-CCHHHHHHHHHHHHhc
Confidence            9  9998886654 2344567 6889999999998763

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.11  E-value=2.7e-10  Score=88.74  Aligned_cols=89  Identities=17%  Similarity=0.294  Sum_probs=72.7

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------ccCCCCc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------HRAKSDG  232 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------~~~~v~~  232 (313)
                      .+++++|+||++||++|+.+.+.+.++..++... ++.++.++++....                        ..|++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  105 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG  105 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC
Confidence            4789999999999999999999999999999874 48888888886531                        4589999


Q ss_pred             CceEEEE-eCCCCCcCceeecc--CcCHHHHHHHHHhcCC
Q 021368          233 FPTILFF-PAGNKSFDPINVDV--DRTVVALYKFLKKNAS  269 (313)
Q Consensus       233 ~P~i~~~-~~g~~~~~~~~y~g--~~~~~~l~~fi~~~~~  269 (313)
                      +|+++++ ++|..+.   .+.|  ..+.+.|.++|.+.+.
T Consensus       106 ~P~~~lid~~G~i~~---~~~g~~~~~~~~l~~~i~~~~~  142 (152)
T 3gl3_A          106 MPTSFLIDRNGKVLL---QHVGFRPADKEALEQQILAALG  142 (152)
T ss_dssp             SSEEEEECTTSBEEE---EEESCCTTTHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCCCEEE---EEccCCCcCHHHHHHHHHHHHc
Confidence            9999999 5565543   5666  3467899999999865

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.10  E-value=3.9e-10  Score=87.01  Aligned_cols=84  Identities=12%  Similarity=0.187  Sum_probs=66.6

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHH---HHHHhcCCCcEEEEEEeCCCcc--------------------------ccc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTNE--------------------------HHR  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~---la~~~~~~~~v~~~~vd~~~~~--------------------------~~~  227 (313)
                      .+++++|+||++||++|+.+++.+.+   +..++++. ++.+..++.+...                          ...
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK-KLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL  108 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT-SEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC-CeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence            36899999999999999999999999   99999763 6888888887651                          246


Q ss_pred             CCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          228 AKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       228 ~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      |++.++|+++++.....+    .+.+ .+.+.|.+||++
T Consensus       109 ~~v~~~P~~~lid~~G~i----~~~~-~~~~~l~~~l~e  142 (142)
T 3eur_A          109 YDLRAIPTLYLLDKNKTV----LLKD-ATLQKVEQYLAE  142 (142)
T ss_dssp             SCCTTCSEEEEECTTCBE----EEEE-ECHHHHHHHHHC
T ss_pred             cCCCcCCeEEEECCCCcE----EecC-CCHHHHHHHHhC
Confidence            789999999999654443    3333 357888888863

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.09  E-value=2.1e-10  Score=97.00  Aligned_cols=124  Identities=10%  Similarity=-0.019  Sum_probs=92.9

Q ss_pred             ccccCCCCCCHHHHHHHHHhcC--CCceEEeCCCccccccc-CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc----Ce
Q 021368            9 ISYFADGKFDKSTIADFVFSNK--LPLVTIFTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK----GK   80 (313)
Q Consensus         9 ~~~y~~g~~~~~~l~~fi~~~~--~~~v~~lt~~~~~~~~~-~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~----~~   80 (313)
                      ...| .|.....++..|+....  ...-..++.+.++.+.. .+..+++.||++| ++|+.+.|.|.+++..+.    +.
T Consensus        96 ~~~~-~G~~~~~~l~~fv~~~l~~~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~  174 (243)
T 2hls_A           96 EVRW-TGIPAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPV  174 (243)
T ss_dssp             TEEE-ESCCCTTHHHHHHHHHHHHHTTCCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ceeE-cCCCcHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCc
Confidence            6678 88777777888776431  11112344444444332 2335577799999 999999999999999983    45


Q ss_pred             EEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368           81 LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus        81 v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      +.+..||++.   ++.++++|||.++  |++++  +|.   ..+.|.++.+.|.+|+.+.++.
T Consensus       175 v~~~~vd~~~---~~~~~~~~~V~~v--Pt~~i--~G~---~~~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          175 ILSEAVEAYE---NPDIADKYGVMSV--PSIAI--NGY---LVFVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             EEEEEEETTT---CHHHHHHTTCCSS--SEEEE--TTE---EEEESCCCHHHHHHHHHHHHTT
T ss_pred             EEEEEEECcc---CHHHHHHcCCeee--CeEEE--CCE---EEEeCCCCHHHHHHHHHHHhhc
Confidence            9999999998   6699999999999  99866  332   2478999999999999998863

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.08  E-value=1.1e-10  Score=89.46  Aligned_cols=100  Identities=7%  Similarity=0.072  Sum_probs=79.2

Q ss_pred             CCccccccc--CCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCc-ccccchhhhhCCCCCCCcEE
Q 021368           39 RENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        39 ~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~-~~~~~l~~~~~v~~~~~P~i  111 (313)
                      .+++...+.  .+..++|.||++| ++|+.+.+.+   .+++..+.+ +.|+.||++.. +.+..++++|||.++  |++
T Consensus        19 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v~~~--Pt~   95 (134)
T 2fwh_A           19 VDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGL--PTI   95 (134)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSS--SEE
T ss_pred             HHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCCCCC--CEE
Confidence            344554443  2568888999999 9999999999   999999987 99999999652 116789999999998  999


Q ss_pred             EEEcCCCCce--eccCCCCCHHHHHHHHHHHh
Q 021368          112 AYTGNDDAKK--HILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       112 ~~~~~~~~~~--~~~~g~~~~~~i~~fi~~~~  141 (313)
                      ++++.++...  ..+.|..+.+.|.+++.+.-
T Consensus        96 ~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           96 LFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             EEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             EEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            9995443222  56889999999999998864

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.08  E-value=1.5e-10  Score=89.63  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------------------------c-ccCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------------H-HRAK  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------------------~-~~~~  229 (313)
                      .+++++|+||++||++|+.+.+.+.++...+.+. ++.++.++++...                          . ..|+
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            5789999999999999999999999999999874 5899999888543                          2 4578


Q ss_pred             CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          230 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       230 v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +.++|+++++ ++|..+.   .+.|..+.+.+++.+.+.+
T Consensus       109 i~~~P~~~lid~~G~i~~---~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVIIA---KRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CCSSCEEEEECTTCBEEE---ESCCGGGHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcEEE---ecCCHHHHHHHHHHHHHHh
Confidence            8999999999 5666543   6677777788887776653

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.07  E-value=3.7e-10  Score=88.16  Aligned_cols=88  Identities=16%  Similarity=0.272  Sum_probs=70.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-------------------------ccccCCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------------------------EHHRAKSD  231 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------~~~~~~v~  231 (313)
                      .+++++|+||++||++|+.+.+.+.++...+... ++.++.++++..                         ....|++.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK-PFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT  105 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence            5789999999999999999999999999999764 588888888875                         11467999


Q ss_pred             cCceEEEE-eCCCCCcCceeeccC--cCHHHHHHHHHhcC
Q 021368          232 GFPTILFF-PAGNKSFDPINVDVD--RTVVALYKFLKKNA  268 (313)
Q Consensus       232 ~~P~i~~~-~~g~~~~~~~~y~g~--~~~~~l~~fi~~~~  268 (313)
                      ++|+++++ ++|..+.   .+.|.  .+.+.+.++|++..
T Consensus       106 ~~P~~~lid~~G~i~~---~~~g~~~~~~~~l~~~l~~l~  142 (154)
T 3kcm_A          106 GVPETFVIDRHGVILK---KVVGAMEWDHPEVIAFLNNEL  142 (154)
T ss_dssp             SBCEEEEECTTSBEEE---EEESCCCTTSHHHHHHHHTC-
T ss_pred             CCCeEEEECCCCcEEE---EEcCCCccccHHHHHHHHHHH
Confidence            99988777 4555543   56675  36789999998874

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.06  E-value=5.4e-10  Score=87.85  Aligned_cols=89  Identities=19%  Similarity=0.371  Sum_probs=71.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-------------------ccc--ccCCCCcCce
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------------------NEH--HRAKSDGFPT  235 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------------------~~~--~~~~v~~~P~  235 (313)
                      .+++++|+||++||++|+.+.+.+.++..++... ++.++.++++.                   +..  ..|++.++|+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  118 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPD  118 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT-SEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC-CeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcce
Confidence            4689999999999999999999999999999853 68999999876                   112  6789999999


Q ss_pred             EEEE-eCCCCCcCceeecc--CcCHHHHHHHHHhcCC
Q 021368          236 ILFF-PAGNKSFDPINVDV--DRTVVALYKFLKKNAS  269 (313)
Q Consensus       236 i~~~-~~g~~~~~~~~y~g--~~~~~~l~~fi~~~~~  269 (313)
                      ++++ ++|..+.   .+.|  ..+..++++.+.++.+
T Consensus       119 ~~lid~~G~i~~---~~~G~~~~~~~~~~~~~~~~~~  152 (158)
T 3hdc_A          119 TFIVDRKGIIRQ---RVTGGIEWDAPKVVSYLKSLEG  152 (158)
T ss_dssp             EEEECTTSBEEE---EEESCCCTTSHHHHHHHHTTC-
T ss_pred             EEEEcCCCCEEE---EEeCCCccchHHHHHHHHhhcc
Confidence            8888 5555443   6777  4567888888887754

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.63  E-value=1.7e-11  Score=93.27  Aligned_cols=102  Identities=8%  Similarity=0.073  Sum_probs=82.2

Q ss_pred             CcccccccCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           40 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        40 ~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      +.+......+...+|.||++| ++|+.+.|.+   .+++..+.+.+.|+.||++... +..++++|+|.++  |++++++
T Consensus        10 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~--Pt~~~~d   86 (130)
T 2lst_A           10 EALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE-GQELARRYRVPGT--PTFVFLV   86 (130)
Confidence            344444556667888999999 9999999999   9999999888999999996543 6799999999999  9999985


Q ss_pred             CC-CCc--eeccCCCCCHHHHHHHHHHHhcCC
Q 021368          116 ND-DAK--KHILDGELTLDKIKTFGEDFLEGK  144 (313)
Q Consensus       116 ~~-~~~--~~~~~g~~~~~~i~~fi~~~~~~~  144 (313)
                      .. +..  ...+.|..+.+.|.+++.+.+++.
T Consensus        87 ~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           87 PKAGAWEEVGRLFGSRPRAEFLKELRQVCVKG  118 (130)
Confidence            32 222  345788899999999999987643

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.05  E-value=1.2e-10  Score=84.95  Aligned_cols=75  Identities=13%  Similarity=0.142  Sum_probs=63.7

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCH
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV  257 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~  257 (313)
                      ..+++||++||++|+.+.+.+.+++..+.    +.+..+|++.++.  .+|++. +|++++|.+|..     .+.|..+.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~----i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~-----v~~g~~~~   99 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW----FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKE-----LCHYFLDS   99 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC----CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEE-----EECSSCCC
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC----CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEE-----EEecCCCH
Confidence            57999999999999999999999998763    7788899987765  678986 999999988775     34577888


Q ss_pred             HHHHHHH
Q 021368          258 VALYKFL  264 (313)
Q Consensus       258 ~~l~~fi  264 (313)
                      +.|.+||
T Consensus       100 ~~L~~~L  106 (107)
T 2fgx_A          100 DVIGAYL  106 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8899887

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.05  E-value=7.6e-10  Score=87.58  Aligned_cols=86  Identities=15%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC------------------Ccc--------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT------------------TNE--------------  224 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~------------------~~~--------------  224 (313)
                      .+++++|+||++||++|+.+.+.+.++..++.   ++.++.++++                  ...              
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPS  112 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTT
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCC
Confidence            56899999999999999999999999999987   5888889887                  221              


Q ss_pred             ----------cccCCCCcCceEEEEeCCCCCcCceeeccCc-CHHHHHHHHHhcCC
Q 021368          225 ----------HHRAKSDGFPTILFFPAGNKSFDPINVDVDR-TVVALYKFLKKNAS  269 (313)
Q Consensus       225 ----------~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~-~~~~l~~fi~~~~~  269 (313)
                                ...|++.++|+++++..+..+    .+.|.. +.+.|.++|++.++
T Consensus       113 ~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i----~~~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          113 WIMVMDDGSLVEKFNVRSIDYIVIMDKSSNV----LYAGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             SEEEECCSHHHHHTTCCSSSEEEEEETTCCE----EEEEESCCHHHHHHHHHHC--
T ss_pred             eeEEeChHHHHHHhCCCCceEEEEEcCCCcE----EEeCCCCCHHHHHHHHHHHhc
Confidence                      156889999999999554443    337777 89999999988753

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=99.04  E-value=2.1e-11  Score=99.78  Aligned_cols=115  Identities=15%  Similarity=0.273  Sum_probs=78.0

Q ss_pred             cchhhhhCCCCCCCcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEcCcChHHH
Q 021368           95 KPVSEYFGITGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEI  173 (313)
Q Consensus        95 ~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~  173 (313)
                      ....+.+||++.  |++++  ++   ++... +..+.+++..|+.+++.  +.+++.+++.|.....   ...+.++..+
T Consensus        40 ~~~a~~~gi~gv--P~fvi--ng---k~~~~~~~~~~~~~~~f~~~~~~--l~~~L~s~~~p~~~~~---~~~g~~y~~l  107 (197)
T 1un2_A           40 EKAAADVQLRGV--PAMFV--NG---KYQLNPQGMDTSNMDVFVQQYAD--TVKYLSEKKGGGTGAQ---YEDGKQYTTL  107 (197)
T ss_dssp             HHHHHHTTCCSS--SEEEE--TT---TEEECGGGSCCSSHHHHHHHHHH--HHHHHTC------------CCBTTTEEEC
T ss_pred             HHHHHHcCCCcC--CEEEE--cc---eEecCccccccccHHHHHHHHHH--HHHHHHhCcccccccc---cCCCCCceEc
Confidence            356788999998  99855  22   22222 33566678888887776  6667777777665322   2355666654


Q ss_pred             hh-cCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCc
Q 021368          174 VL-DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTN  223 (313)
Q Consensus       174 l~-~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~  223 (313)
                      .. ...++++|.||+.||++|+.+.|.+   .+++..+.+  ++.|..+++..+
T Consensus       108 ~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~--~v~~~~~~v~~~  159 (197)
T 1un2_A          108 EKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFM  159 (197)
T ss_dssp             SSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSS
T ss_pred             cCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC--CCEEEEeccCcC
Confidence            32 3467899999999999999999998   999888865  689999998754

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.04  E-value=8.6e-11  Score=97.59  Aligned_cols=102  Identities=11%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             CCceEEe-CCCcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIF-TRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~l-t~~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ...|.++ +.++|...+...   ..++|.||++| ++|+.+.|.|.++|.++.+ +.|+.||++    ++.++..|+|.+
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~-v~f~~vd~~----~~~l~~~~~i~~  172 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRAS----NTGAGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHH----HHTCSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEEECC----cHHHHHHCCCCC
Confidence            3467888 888888877433   57888899999 9999999999999999975 999999997    347999999999


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCC-------HHHHHHHHHHH
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELT-------LDKIKTFGEDF  140 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~-------~~~i~~fi~~~  140 (313)
                      +  |++++|.+|. ....+.|..+       .+.|..|+.++
T Consensus       173 ~--PTl~~~~~G~-~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          173 L--PTLLVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             C--SEEEEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             C--CEEEEEECCE-EEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            9  9999998664 2334555444       58999999875

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.03  E-value=3.8e-10  Score=91.04  Aligned_cols=88  Identities=11%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcE------EEEEEeCCC-ccc--ccC-------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI------VIAKMDGTT-NEH--HRA-------------------  228 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v------~~~~vd~~~-~~~--~~~-------------------  228 (313)
                      .+++++|+||++||++|+.+.+.+.++..+++.. ++      .|+.++++. ...  ..|                   
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            4689999999999999999999999999998764 35      899999887 222  222                   


Q ss_pred             ------CCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          229 ------KSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       229 ------~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                            ++..+|+++++ ++|..+.   .+.|..+.+.|.++|.+.+
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRPAA---VFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCEEE---EECSCCCHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCeEEEECCCCcEEE---EEcCCCCHHHHHHHHHHHH
Confidence                  57899987777 5566543   6888889999999998865

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.03  E-value=2.1e-10  Score=91.10  Aligned_cols=100  Identities=21%  Similarity=0.310  Sum_probs=70.8

Q ss_pred             CeEEE--cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC----------------
Q 021368          161 DVKIV--VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------  222 (313)
Q Consensus       161 ~v~~l--~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------  222 (313)
                      .+..+  +++.+.......+++++|+||++||++|+.+.+.+.+++..     ++.++.++++.                
T Consensus        32 ~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~  106 (168)
T 2b1k_A           32 RLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPY  106 (168)
T ss_dssp             EEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCC
T ss_pred             EeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCC
Confidence            34455  45555433334688999999999999999999999998875     35555555332                


Q ss_pred             -------cc--cccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          223 -------NE--HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       223 -------~~--~~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                             +.  ...|++.++|+++++ ++|..+.   .+.|..+.+.|.++|.+.+
T Consensus       107 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          107 ALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRY---RHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             SEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEE---EEESCCCHHHHHHTTHHHH
T ss_pred             ceeeECcchHHHHHcCccccCEEEEECCCCeEEE---EEeCCCCHHHHHHHHHHHH
Confidence                   11  146799999976666 5565543   6778888888888887764

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.03  E-value=1.9e-10  Score=80.98  Aligned_cols=73  Identities=11%  Similarity=0.022  Sum_probs=59.0

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA  259 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~  259 (313)
                      +++||++||++|+.+.+.+.+++..+       +..+|++.++.  .+|++. +|++++ .+|..+     . |..+.+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v-----~-g~~~~~~   67 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PMGREL-----D-WPFDAPR   67 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEE-----E-SCCCHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEE-----e-CCCCHHH
Confidence            78999999999999999998875321       57899998766  678997 999998 666653     2 7789999


Q ss_pred             HHHHHHhcCC
Q 021368          260 LYKFLKKNAS  269 (313)
Q Consensus       260 l~~fi~~~~~  269 (313)
                      |.+||.+.+.
T Consensus        68 L~~~l~~~~~   77 (87)
T 1ttz_A           68 LRAWLDAAPH   77 (87)
T ss_dssp             HHHHHHTCC-
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.02  E-value=9.3e-10  Score=85.87  Aligned_cols=86  Identities=20%  Similarity=0.301  Sum_probs=67.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-------------------------cc--ccCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------------------------EH--HRAK  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------~~--~~~~  229 (313)
                      .+++++|+||++||++|+.+.+.+.++..++.+. ++.++.++++..                         ..  ..|+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK-GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT-TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            4789999999999999999999999999999864 589999998862                         11  5789


Q ss_pred             CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          230 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       230 v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +.++|+++++ ++|..+.   .+   .+.+.|.++|++.+.
T Consensus       107 v~~~P~~~lid~~G~i~~---~~---~~~~~l~~~l~~l~~  141 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKIVA---KE---LRGDDLYNTVEKFVN  141 (152)
T ss_dssp             CCSSCEEEEECTTSEEEE---EC---CCTTHHHHHHHHHHT
T ss_pred             CCcCCeEEEECCCCeEEE---ee---CCHHHHHHHHHHHHh
Confidence            9999999999 5565532   22   234567777777654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.99  E-value=3.9e-10  Score=94.99  Aligned_cols=102  Identities=11%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             CCceEEe-CCCccccccc---CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIF-TRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~l-t~~~~~~~~~---~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ...|.++ +.++|...+.   .+..++|.||++| ++|+.+.|.|.++|.+|.+ +.|+.||++.    +.++..|+|.+
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~----~~l~~~~~I~~  185 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN----TGAGDRFSSDV  185 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH----HCCTTSSCTTT
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc----HHHHHHCCCCC
Confidence            3467888 6788888774   3567788899999 9999999999999999988 9999999975    36899999999


Q ss_pred             CCCcEEEEEcCCCCceeccCC-------CCCHHHHHHHHHHH
Q 021368          106 EAPKVLAYTGNDDAKKHILDG-------ELTLDKIKTFGEDF  140 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g-------~~~~~~i~~fi~~~  140 (313)
                      +  ||+++|.+|... ..+.|       .++.+.|..|+.+.
T Consensus       186 ~--PTll~~~~G~~v-~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          186 L--PTLLVYKGGELL-SNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             C--SEEEEEETTEEE-EEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             C--CEEEEEECCEEE-EEEeCCcccccccccHHHHHHHHHHc
Confidence            9  999999866521 22222       25788999999886

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.99  E-value=4.3e-10  Score=89.60  Aligned_cols=76  Identities=18%  Similarity=0.330  Sum_probs=59.2

Q ss_pred             CcChHHHhhcCCCcEEEEEeCCCCccchhhhHH-H--HHHHHHhcCCCcEEEEEEeCCCccc--ccC--------CCCcC
Q 021368          167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGF  233 (313)
Q Consensus       167 ~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~~~--------~v~~~  233 (313)
                      .+.|.... ..+++++|.||++||++|+.|.+. |  .+++..+..  ++.++.+|.+....  ..|        ++.++
T Consensus        29 ~ea~~~A~-~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~--~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~  105 (173)
T 3ira_A           29 EEAFEKAR-KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE--AFVSIKVDREERPDIDNIYMTVCQIILGRGGW  105 (173)
T ss_dssp             HHHHHHHH-HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH--HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHHHHHH-HhCCCEEEecccchhHhhccccccccCCHHHHHHHHh--cCceeeeCCcccCcHHHHHHHHHHHHcCCCCC
Confidence            35555544 568999999999999999999983 3  467777755  68999999987654  455        89999


Q ss_pred             ceEEEEe-CCCCC
Q 021368          234 PTILFFP-AGNKS  245 (313)
Q Consensus       234 P~i~~~~-~g~~~  245 (313)
                      |++++|. +|+.+
T Consensus       106 Pt~v~l~~dG~~v  118 (173)
T 3ira_A          106 PLNIIMTPGKKPF  118 (173)
T ss_dssp             SEEEEECTTSCEE
T ss_pred             cceeeECCCCCce
Confidence            9999996 66653

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.99  E-value=6.2e-10  Score=98.91  Aligned_cols=88  Identities=11%  Similarity=0.149  Sum_probs=72.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-----------------------------cccc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------------EHHR  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------------~~~~  227 (313)
                      .+++++|+||++||++|+.+.+.+.+++.++++. ++.++.|+++..                             ....
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~-~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS-GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC-CeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            4789999999999999999999999999999763 588888887531                             1146


Q ss_pred             CCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          228 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       228 ~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      |++..+|+++++ ++|..+.   .+.|..+.+.|.++|++.+
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~---~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRH---IKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEE---EEESBCCHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeEEE---EEcCCCCHHHHHHHHHHHH
Confidence            899999999999 5565543   6788888889999988876

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.98  E-value=2.5e-09  Score=82.52  Aligned_cols=105  Identities=12%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             EeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCC------------------------
Q 021368           36 IFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN------------------------   90 (313)
Q Consensus        36 ~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~------------------------   90 (313)
                      .++.+.+......++..+|.||++| ++|+...|.|.+++.++.+.+.|+.|+++.                        
T Consensus        16 ~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (148)
T 2b5x_A           16 WLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIF   95 (148)
T ss_dssp             EESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEE
T ss_pred             cccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceE
Confidence            4455555433335567888999999 999999999999999999889999999753                        


Q ss_pred             cccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           91 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        91 ~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .+.+..+++.|||.++  |++++++.++.....+.|..+.+.|.+++.+.+.
T Consensus        96 ~d~~~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           96 VDSDHALTDAFENEYV--PAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             ECSSCHHHHHTCCCCS--SEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             ECCchhHHHHhCCCCC--CEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence            1115689999999988  9999996665555567788899999999999876

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.97  E-value=1.5e-10  Score=84.57  Aligned_cols=99  Identities=10%  Similarity=0.043  Sum_probs=77.4

Q ss_pred             EEe-CCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhCCCC-CCCcE
Q 021368           35 TIF-TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITG-EAPKV  110 (313)
Q Consensus        35 ~~l-t~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~v~~-~~~P~  110 (313)
                      ..+ |.+.|++++....+.+|.|++.| ++|+.+.|.|++++..  +.+.|++||.++..+ ...++.++||+. .  |+
T Consensus         9 ~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~s--Pq   84 (112)
T 3iv4_A            9 IKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHES--PQ   84 (112)
T ss_dssp             EECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCS--SE
T ss_pred             eecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCC--Ce
Confidence            344 44567777777778888999999 9999999999999985  459999999998320 123899999994 6  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                      +++|++|+.....-.+.++.+.|.+++
T Consensus        85 ~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           85 AFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             EEEEECCEEEEEeeccccCHHHHHHhh
Confidence            999998875444346788888887764

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.96  E-value=1.5e-09  Score=84.69  Aligned_cols=95  Identities=14%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             cChHHHh---hcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEE
Q 021368          168 NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTIL  237 (313)
Q Consensus       168 ~~f~~~l---~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~  237 (313)
                      .++++.+   ...+|+++|+||++||..|+.|....   .++...++.  ++.+.++|.+....    +.|++.++|+++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEE
Confidence            4666655   34589999999999999999997655   456665644  68999999866433    578999999999


Q ss_pred             EEeC--CCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPA--GNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~--g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++..  |..+.   .+.| .+.+.++++|++.+
T Consensus       107 fld~~~G~~l~---~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          107 ILDPRTGQKLV---EWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             EECTTTCCCCE---EESS-CCHHHHHHHHHHHH
T ss_pred             EEeCCCCcEee---ecCC-CCHHHHHHHHHHHH
Confidence            9954  44442   4555 89999998888775

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.95  E-value=6.1e-10  Score=87.09  Aligned_cols=93  Identities=17%  Similarity=0.290  Sum_probs=68.8

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-----------------------
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------  224 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------------  224 (313)
                      +.+.-... .+++++|+||++||++|+.+.+.+.++...    .++.++.++++...                       
T Consensus        33 ~~~~l~~~-~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  107 (156)
T 1kng_A           33 PGLDPAAF-KGKVSLVNVWASWCVPCHDEAPLLTELGKD----KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANG  107 (156)
T ss_dssp             CCBCGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHTTC----TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTS
T ss_pred             ceechHHh-CCCEEEEEEEcccCHhHHHHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchh
Confidence            44443332 478999999999999999999999988765    25777777754321                       


Q ss_pred             --cccCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          225 --HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       225 --~~~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                        ...|++.++|+++++ ++|..+.   .+.|..+.+.|.++|.+.+
T Consensus       108 ~~~~~~~v~~~P~~~~id~~G~i~~---~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          108 RASIEWGVYGVPETFVVGREGTIVY---KLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             HHHHHTTCCSSCEEEEECTTSBEEE---EEESCCCHHHHHHTHHHHH
T ss_pred             HHHHhcCcCccCeEEEEcCCCCEEE---EEeCCCCHHHHHHHHHHHH
Confidence              146899999987777 5665543   6788888899999888764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.95  E-value=4.6e-09  Score=79.76  Aligned_cols=102  Identities=17%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             eCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------cccc
Q 021368           37 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGK   95 (313)
Q Consensus        37 lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~   95 (313)
                      ++.+.+......+...+|.||++| ++|+...+.|.+++.++. .+.|+.|++++.                    +.+.
T Consensus        13 ~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (136)
T 1zzo_A           13 LDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDG   91 (136)
T ss_dssp             TTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTC
T ss_pred             CCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCc
Confidence            334444333334567788899999 999999999999999999 599999998641                    1156


Q ss_pred             chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           96 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        96 ~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .+++.|||.++  |++++++.++... .+.|..+.+.|.+++.+.++
T Consensus        92 ~~~~~~~i~~~--P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           92 SVWANFGVTQQ--PAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             HHHHHTTCCSS--SEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             HHHHHcCCCCC--ceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            88999999988  9999997554444 67888999999999998764

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.94  E-value=2.3e-09  Score=85.00  Aligned_cols=65  Identities=20%  Similarity=0.407  Sum_probs=55.7

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------c--ccCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------H--HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------~--~~~~v  230 (313)
                      .+++++|+||++||++|+.+.+.+.+++.+++...++.++.|+++...                        .  ..|++
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            478999999999999999999999999999986446888888877651                        1  57899


Q ss_pred             CcCceEEEEeC
Q 021368          231 DGFPTILFFPA  241 (313)
Q Consensus       231 ~~~P~i~~~~~  241 (313)
                      .++|+++++..
T Consensus       127 ~~~Pt~~lid~  137 (165)
T 3s9f_A          127 ESIPTLIGLNA  137 (165)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCCCEEEEEeC
Confidence            99999999974

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.93  E-value=5.8e-09  Score=79.32  Aligned_cols=90  Identities=9%  Similarity=0.138  Sum_probs=74.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc-------------------ccccchhhhhCCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-------------------DVGKPVSEYFGITGEA  107 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~-------------------~~~~~l~~~~~v~~~~  107 (313)
                      .++..+|.||++| ++|....+.+.+++.++. .+.|+.|+++..                   +.+..+++.|||.++ 
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-  100 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ-  100 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS-
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCC-
Confidence            4567888899999 999999999999999999 599999998761                   114588999999988 


Q ss_pred             CcEEEEEcCCCCceeccC---CCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILD---GELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~---g~~~~~~i~~fi~~~~  141 (313)
                       |++++++.++... .+.   |..+.+.|.+++.+.+
T Consensus       101 -P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          101 -PAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             -SEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             -CEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence             9998996654444 677   8899999999998864

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.93  E-value=1.8e-09  Score=84.37  Aligned_cols=84  Identities=13%  Similarity=0.090  Sum_probs=66.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------c-ccCCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------H-HRAKSD  231 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------~-~~~~v~  231 (313)
                      .+++++|+||++||++|+...+.+.++..++++. ++.++.++++...                        . ..|++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            3689999999999999999999999999999864 5888889887653                        1 456889


Q ss_pred             cCceEEEEe-CCCCCcCceeeccCcCHHHHHHHH
Q 021368          232 GFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       232 ~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                      ++|+++++. +|..+.   .+.|..+.+....-+
T Consensus       113 ~~P~~~lid~~G~i~~---~~~g~~~~e~~~~~~  143 (152)
T 2lrt_A          113 NLPSVFLVNRNNELSA---RGENIKDLDEAIKKL  143 (152)
T ss_dssp             SCSEEEEEETTTEEEE---ETTTCSCHHHHHHHH
T ss_pred             cCceEEEECCCCeEEE---ecCCHHHHHHHHHHH
Confidence            999999995 565543   677877766554433

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.91  E-value=3.1e-09  Score=82.24  Aligned_cols=68  Identities=16%  Similarity=0.333  Sum_probs=57.0

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------c--ccCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------H--HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------~--~~~~v  230 (313)
                      .+++++|+||++||++|+.+.+.+.+++.++++..++.++.++++...                        .  ..|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            468999999999999999999999999999984337888888887632                        1  56899


Q ss_pred             CcCceEEEEe--CCCC
Q 021368          231 DGFPTILFFP--AGNK  244 (313)
Q Consensus       231 ~~~P~i~~~~--~g~~  244 (313)
                      .++|+++++.  +|..
T Consensus       107 ~~~Pt~~lid~~~G~i  122 (146)
T 1o8x_A          107 ESIPTLIGVDADSGDV  122 (146)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEECCCCeE
Confidence            9999999997  5554

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.91  E-value=3.4e-09  Score=81.81  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=62.4

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-----------------
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------  224 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------  224 (313)
                      +..++++.+.-.- -.+++++|+||++||++|+.+.+.+.+++.+++...++.++.++++...                 
T Consensus        13 l~~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T 1i5g_A           13 VLKGAAADIALPS-LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEGGG-GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EEcCCCCEecHHH-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCcccccc
Confidence            4444444433222 2468999999999999999999999999999985347888888888631                 


Q ss_pred             -------c--ccCCCCcCceEEEEe--CCCC
Q 021368          225 -------H--HRAKSDGFPTILFFP--AGNK  244 (313)
Q Consensus       225 -------~--~~~~v~~~P~i~~~~--~g~~  244 (313)
                             .  ..|++.++|+++++.  +|..
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i  122 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNI  122 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCCE
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEECCCCcE
Confidence                   1  578999999999996  5554

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.90  E-value=3.5e-09  Score=83.00  Aligned_cols=92  Identities=12%  Similarity=0.014  Sum_probs=75.1

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcc--------cccchhhhhCCCCCCCcEEEEE
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED--------VGKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~--------~~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      .+++++|.|| ++| ++|+.+.|.+   .+++..+...+.++.||++...        .+..+++.|+|.++  |+++++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~--Pt~~~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGF--PELVFI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSS--SEEEEE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCC--CEEEEE
Confidence            4567888899 999 9999999999   7887777667999999998731        13488999999998  999999


Q ss_pred             cCCCCceeccCCCC--CHHHHHHHHHHHhc
Q 021368          115 GNDDAKKHILDGEL--TLDKIKTFGEDFLE  142 (313)
Q Consensus       115 ~~~~~~~~~~~g~~--~~~~i~~fi~~~~~  142 (313)
                      +.++.....+ |..  +.+.+.+++.+.+.
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            6554455566 887  89999999998875

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.90  E-value=1.7e-09  Score=88.02  Aligned_cols=91  Identities=9%  Similarity=0.110  Sum_probs=69.2

Q ss_pred             CCC-cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------------ccc-
Q 021368          177 ESK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------------NEH-  225 (313)
Q Consensus       177 ~~k-~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------------~~~-  225 (313)
                      .++ +++|+||++||++|+...+.+.++..++.+. ++.++.++++.                             +.. 
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK-GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEV  122 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHH
Confidence            355 5999999999999999999999999999764 58888888742                             111 


Q ss_pred             -ccCCCCcCceEEEEe-CCCCCcCcee-------eccCcCHHHHHHHHHhcCC
Q 021368          226 -HRAKSDGFPTILFFP-AGNKSFDPIN-------VDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       226 -~~~~v~~~P~i~~~~-~g~~~~~~~~-------y~g~~~~~~l~~fi~~~~~  269 (313)
                       ..|++.++|+++++. +|..+. ...       +.|..+.+.|.+.|.+.+.
T Consensus       123 ~~~~~v~~~P~~~lid~~G~i~~-~~~~~~~~~~~~g~~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          123 AKAYDAACTPDFYIFDRDLKCVY-RGQLDDSRPNNGIPVTGESIRAALDALLE  174 (196)
T ss_dssp             HHHHTCCEESEEEEEETTCBEEE-EECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCeEEEEcCCCeEEE-ccccCcccccccCccCHHHHHHHHHHHHc
Confidence             567899999999995 555432 001       3466788899999988863

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.89  E-value=9.1e-09  Score=79.95  Aligned_cols=85  Identities=12%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             CCCcEEEEEeCCCCcc--chhhhHHHHHHHHHh-cCCCcEEEEEEeCCCcc-------------------------c--c
Q 021368          177 ESKDVLLEIYAPWCGH--CQAFEPTYNKLAKHL-RGVDSIVIAKMDGTTNE-------------------------H--H  226 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~--C~~~~~~~~~la~~~-~~~~~v~~~~vd~~~~~-------------------------~--~  226 (313)
                      .+++++|+||++||++  |+...+.+.++..++ ++ .++.++.++++...                         .  .
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  110 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN-KYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAK  110 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC-SSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHH
Confidence            4689999999999999  999999999999999 54 35888888888653                         1  4


Q ss_pred             cCCCCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          227 RAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       227 ~~~v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .|++.++|+++++ ++|..+.   .+   .+.+.|.+.|.+.+
T Consensus       111 ~~~v~~~P~~~lid~~G~i~~---~~---~~~~~l~~~l~~ll  147 (150)
T 3fw2_A          111 QYSIYKIPANILLSSDGKILA---KN---LRGEELKKKIENIV  147 (150)
T ss_dssp             HTTCCSSSEEEEECTTSBEEE---ES---CCHHHHHHHHHHHH
T ss_pred             HcCCCccCeEEEECCCCEEEE---cc---CCHHHHHHHHHHHH
Confidence            6899999999999 4555432   22   26777777776653

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.88  E-value=3.7e-09  Score=81.46  Aligned_cols=68  Identities=21%  Similarity=0.411  Sum_probs=56.6

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----------------------c----ccCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------H----HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----------------------~----~~~~v  230 (313)
                      .+++++|+||++||++|+.+.+.+.+++.+++...++.++.++++...                      .    ..|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            468999999999999999999999999999984346888888887632                      1    46789


Q ss_pred             CcCceEEEEe--CCCC
Q 021368          231 DGFPTILFFP--AGNK  244 (313)
Q Consensus       231 ~~~P~i~~~~--~g~~  244 (313)
                      .++|+++++.  +|..
T Consensus       107 ~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A          107 ESIPTLITINADTGAI  122 (144)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEECCCCeE
Confidence            9999999998  4554

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.87  E-value=1.4e-09  Score=79.73  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=60.6

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc---cccchhhhhCCCCCCCcEEEEEcCCCCceeccCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG  126 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~---~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g  126 (313)
                      ..+|.||++| ++|+.+.|.|.+++.++.      .|||+...   .++.+|++|||+++  |++++  +|.    .+.|
T Consensus        14 ~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~--PT~~i--~G~----~~~G   79 (106)
T 3kp8_A           14 IGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSY--PTWII--NGR----TYTG   79 (106)
T ss_dssp             HTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSS--SEEEE--TTE----EEES
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEe--CEEEE--CCE----EecC
Confidence            5688999999 999999999999998876      56776210   16789999999999  99866  332    3789


Q ss_pred             CCCHHHHHHHHHH
Q 021368          127 ELTLDKIKTFGED  139 (313)
Q Consensus       127 ~~~~~~i~~fi~~  139 (313)
                      .++.+.|.+|+.-
T Consensus        80 ~~~~~~l~~~~~~   92 (106)
T 3kp8_A           80 VRSLEALAVASGY   92 (106)
T ss_dssp             CCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHhCC
Confidence            9999999998743

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=98.87  E-value=3.6e-09  Score=84.40  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             EeCCCcccccc----cCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcccccch----------
Q 021368           36 IFTRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPV----------   97 (313)
Q Consensus        36 ~lt~~~~~~~~----~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~~~~l----------   97 (313)
                      ..+..++++.+    ..++.++|.||++| ++|+.+.+.+   .++...+++.+.|+.||+++..   .+          
T Consensus        30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~---~~~~~~~~~~~~  106 (172)
T 3f9u_A           30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKT---PLTEPVKIMENG  106 (172)
T ss_dssp             CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCC---EEEEEEEEEETT
T ss_pred             ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCccc---ccchhhhhhhcc
Confidence            34455666544    45678888999999 9999975444   5666666657999999998743   44          


Q ss_pred             ----------------hhhhCCCCCCCcEEEEEcCCCCceeccCCCCC-HHHHHHHHHHHhc
Q 021368           98 ----------------SEYFGITGEAPKVLAYTGNDDAKKHILDGELT-LDKIKTFGEDFLE  142 (313)
Q Consensus        98 ----------------~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~-~~~i~~fi~~~~~  142 (313)
                                      ++.|||.++  |++++++.++.....+.|..+ .+.+.+++.+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~--Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          107 TERTLRTVGDKWSYLQRVKFGANAQ--PFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHSCCCS--SEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHcCCCCc--ceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence                            789999998  999999655444455678888 9999999988764

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.85  E-value=7.8e-09  Score=83.61  Aligned_cols=91  Identities=9%  Similarity=0.081  Sum_probs=67.4

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------------ccc--
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------------NEH--  225 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------------~~~--  225 (313)
                      .+++++|+||++||++|+...+.+.++..++.+.  +.++.++++.                             +..  
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            4689999999999999999999999999999874  8888888742                             111  


Q ss_pred             ccCCCCcCceEEEEe-CCCCCcCcee-----eccCcCHHHHHHHHHhcCC
Q 021368          226 HRAKSDGFPTILFFP-AGNKSFDPIN-----VDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       226 ~~~~v~~~P~i~~~~-~g~~~~~~~~-----y~g~~~~~~l~~fi~~~~~  269 (313)
                      ..|++.++|+++++. +|..+.....     +.|..+.+.|.+.|.+.+.
T Consensus       110 ~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A          110 KAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             HHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             HHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHc
Confidence            578999999999994 4544310000     1233366788888888764

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.85  E-value=1.9e-08  Score=79.26  Aligned_cols=91  Identities=14%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhhh------------------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYF------------------------  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~~------------------------  101 (313)
                      .++..+|.||++| ++|....|.|.+++.++.+. +.|+.|+++.   ....++.|                        
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNE---QLPNVKNYMKTQGIIYPVMMATPELIRAFNGY  109 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSC---CHHHHHHHHHHHTCCSCEEECCHHHHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC---CHHHHHHHHHHcCCCCceEecCHHHHHHHhhh
Confidence            4567888899999 99999999999999999975 9999999987   33555555                        


Q ss_pred             ---CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          102 ---GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       102 ---~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                         ++.++  |++++++.++.....+.|..+.+.|.+++.+.+..
T Consensus       110 ~~~~i~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A          110 IDGGITGI--PTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             STTCSCSS--SEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC-
T ss_pred             hccCCCCC--CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhh
Confidence               89888  99888876655566778999999999999999864

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.84  E-value=8.6e-09  Score=79.41  Aligned_cols=84  Identities=12%  Similarity=0.046  Sum_probs=63.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-------------------------c---ccC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------------H---HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------------------------~---~~~  228 (313)
                      .+++++|+||++||++|+.+.+.+.++..++++. ++.+..++++...                         .   ..|
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            4689999999999999999999999999999764 6888888877432                         0   357


Q ss_pred             CCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          229 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       229 ~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      ++.++|+.+++.....+    .+.+ ...+.|.++|.+
T Consensus       110 ~v~~~P~~~lid~~G~i----~~~~-~~~~~l~~~l~~  142 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVI----IAAN-VTPEKLTEILKA  142 (143)
T ss_dssp             TGGGCCCEEEECTTSBE----EEES-CCHHHHHHHHTC
T ss_pred             CCCCCCcEEEECCCCEE----EEcc-CCHHHHHHHHHh
Confidence            89999999999643332    2222 346677777643

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.83  E-value=1.2e-08  Score=78.45  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=73.6

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCC-----------------------cccccchhhhhC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDN-----------------------EDVGKPVSEYFG  102 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~-----------------------~~~~~~l~~~~~  102 (313)
                      .++..+|.||++| ++|+...+.|.+++.++. ..+.|+.|+++.                       .. +..+++.|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDS-KGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECS-SSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcC-chhHHHhcC
Confidence            5667788899999 999999999999999998 459999999864                       11 458999999


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      |.++  |++++++.++.....+.|..+.+.|.++++
T Consensus       112 v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          112 IITI--PTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             CCEE--SEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             cCcc--CeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence            9988  999999766555566789999999998873

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.82  E-value=3.7e-09  Score=84.76  Aligned_cols=84  Identities=17%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-------------------------cccCCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------------HHRAKSD  231 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~v~  231 (313)
                      .+++++|+||++||++|+.+.+.+.++..+     ++.++.|+++...                         ...|++.
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  131 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY  131 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCC
Confidence            478999999999999999999999998875     3666666642211                         1467899


Q ss_pred             cCceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          232 GFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       232 ~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|+++++. +|..+.   .+.|..+.+.|.++|.+.+
T Consensus       132 ~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          132 GAPETYLIDKQGIIRH---KIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             SSCEEEEECTTCBEEE---EEESCCCHHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCeEEE---EEcCCCCHHHHHHHHHHHH
Confidence            999888884 555443   6778888888888887765

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.82  E-value=3.7e-09  Score=84.02  Aligned_cols=89  Identities=13%  Similarity=0.101  Sum_probs=68.3

Q ss_pred             CCCcEEEEEeCCCCcc-chhhhHHHHHHHHHhcCC--CcEEEEEEeCCCccc----------------------------
Q 021368          177 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGV--DSIVIAKMDGTTNEH----------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~~~~--~~v~~~~vd~~~~~~----------------------------  225 (313)
                      .+++++|+||++||++ |....+.+.++..+++..  .++.++.++++....                            
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4689999999999997 999999999999988743  258888888874310                            


Q ss_pred             --cc---------------CCCCcCceEEEEeCCCCCcCceeeccCc--CHHHHHHHHHhcC
Q 021368          226 --HR---------------AKSDGFPTILFFPAGNKSFDPINVDVDR--TVVALYKFLKKNA  268 (313)
Q Consensus       226 --~~---------------~~v~~~P~i~~~~~g~~~~~~~~y~g~~--~~~~l~~fi~~~~  268 (313)
                        ..               |++.++|+++++.+|..+.   .+.|..  +.+.|.+.|++.+
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~---~~~g~~~~~~~~l~~~l~~ll  172 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVL---LYSPDKAEATDRVVADLQALL  172 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEE---EECHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEE---EECCCCCCCHHHHHHHHHHhC
Confidence              11               2356789999999444433   677766  8899999998753

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.82  E-value=3.3e-08  Score=76.71  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=77.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc--------------------cccchhhhhCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED--------------------VGKPVSEYFGITG  105 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~--------------------~~~~l~~~~~v~~  105 (313)
                      .++..+|.||++| +.|+...+.+.+++.++.+ .+.|+.|+++...                    ....+++.|||.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            3457788899999 9999999999999999987 4999999988732                    0136889999998


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      +  |++++++.++.....+.|..+.+.|.+++++.+.+
T Consensus       109 ~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~  144 (152)
T 2lja_A          109 I--PRFILLDRDGKIISANMTRPSDPKTAEKFNELLGL  144 (152)
T ss_dssp             S--CCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTC
T ss_pred             C--CEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcc
Confidence            8  99989886555556677889999999999998764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.80  E-value=2.1e-08  Score=68.43  Aligned_cols=72  Identities=17%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCC-CH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL-TL  130 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~-~~  130 (313)
                      .|.||++| ++|+.+.|.|.+++.++.+.+.++.+|      +..++++|||.++  |++++  +|.  .. ..|.. +.
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~~--Pt~~~--~G~--~~-~~G~~~~~   69 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK------EMDQILEAGLTAL--PGLAV--DGE--LK-IMGRVASK   69 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC------SHHHHHHHTCSSS--SCEEE--TTE--EE-ECSSCCCH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec------CHHHHHHCCCCcC--CEEEE--CCE--EE-EcCCCCCH
Confidence            47799999 999999999999999999889999998      2389999999999  99977  332  22 23876 89


Q ss_pred             HHHHHHH
Q 021368          131 DKIKTFG  137 (313)
Q Consensus       131 ~~i~~fi  137 (313)
                      +.|.+++
T Consensus        70 ~~l~~~l   76 (77)
T 1ilo_A           70 EEIKKIL   76 (77)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998875

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.80  E-value=1.9e-08  Score=83.53  Aligned_cols=87  Identities=10%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             CC-cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------------ccc--
Q 021368          178 SK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------------NEH--  225 (313)
Q Consensus       178 ~k-~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------------~~~--  225 (313)
                      ++ +++|+||++||++|+...+.+.++..++++. ++.++.|+++.                             ...  
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ-GLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT-TEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            56 5999999999999999999999999999874 58888888842                             111  


Q ss_pred             ccCCCCcCceEEEEeCCCCCcCceeecc-----------CcCHHHHHHHHHhcCC
Q 021368          226 HRAKSDGFPTILFFPAGNKSFDPINVDV-----------DRTVVALYKFLKKNAS  269 (313)
Q Consensus       226 ~~~~v~~~P~i~~~~~g~~~~~~~~y~g-----------~~~~~~l~~fi~~~~~  269 (313)
                      ..|++..+|+++++.....+    .|.|           ..+.+.|.+.|.+.+.
T Consensus       137 ~~~~v~~~P~~~liD~~G~i----~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERRL----VYHGQFDDARPGNGKDVTGADLRAAVDAVLK  187 (218)
T ss_dssp             HHHTCCEESEEEEECTTCBE----EEEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred             HHcCCCCCCeEEEECCCCcE----EEeccccccccccccccCHHHHHHHHHHHHc
Confidence            56899999999999544433    4443           3356788888888764

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.79  E-value=4.7e-08  Score=75.95  Aligned_cols=97  Identities=15%  Similarity=0.124  Sum_probs=77.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc--------------------ccccchhhhhCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------------------DVGKPVSEYFGITG  105 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~--------------------~~~~~l~~~~~v~~  105 (313)
                      .++..+|.||++| ++|+...+.+.+++.++.+. +.|+.|+.+..                    +....+++.|||.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            4557788899999 99999999999999999874 88877764210                    01457999999998


Q ss_pred             CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCC
Q 021368          106 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLK  146 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~  146 (313)
                      +  |++++++.++.....+.|..+.+.|.+++.+.+.+...
T Consensus       107 ~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~  145 (153)
T 2l5o_A          107 Y--PTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDA  145 (153)
T ss_dssp             S--SEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSS
T ss_pred             c--CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhh
Confidence            8  99988876554555678889999999999999886543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.79  E-value=4.3e-08  Score=76.19  Aligned_cols=96  Identities=13%  Similarity=0.092  Sum_probs=77.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc---------------------cccchhhhhC--
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED---------------------VGKPVSEYFG--  102 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~---------------------~~~~l~~~~~--  102 (313)
                      .++.++|.||++| ++|....|.|.+++.++.+ .+.|+.|+++...                     ....+++.||  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            4567788899999 8999999999999999964 5999999986311                     1346778899  


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                      +.++  |++++++.++.....+.|..+.+.|.+++.+...+..
T Consensus       103 v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A          103 VGVL--PFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             SCCS--SEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             cCCC--CEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            8877  9888887766667778999999999999999877543

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.79  E-value=2.7e-08  Score=77.21  Aligned_cols=96  Identities=14%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------cccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------VGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------~~~~l~~~~~v~~~  106 (313)
                      .++..+|.||++| ++|+...|.|.+++.++.+ .+.|+.|+++...                   .+..+++.|||.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            4557788899999 9999999999999999987 4999999986521                   13478999999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                        |++++++.++.....+.|..+.+.|.+++.+.+.+..
T Consensus       105 --P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A          105 --PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGET  141 (151)
T ss_dssp             --CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred             --CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence              9988886655455566788999999999999987543

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=6.4e-10  Score=87.44  Aligned_cols=87  Identities=15%  Similarity=0.247  Sum_probs=63.0

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHH-HHHHhcCCCcEEEEEEeCCCccc--ccCC------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNK-LAKHLRGVDSIVIAKMDGTTNEH--HRAK------------------------  229 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~-la~~~~~~~~v~~~~vd~~~~~~--~~~~------------------------  229 (313)
                      .+++++|+||++||++|+.+.+.+.+ +...++...++.++.++++....  ..+.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            46899999999999999999999998 88887623368888888776532  2332                        


Q ss_pred             CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          230 SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       230 v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      +.++|+++++ ++|+.+.   .+.| .+...+.++|++.
T Consensus       112 ~~~~P~~~lid~~G~i~~---~~~g-~~~~~l~~~l~~l  146 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVK---LTRL-YNEEEFASLVQQI  146 (159)
Confidence            5679999999 6676653   4455 4555566666554

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.75  E-value=4.3e-08  Score=75.54  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccc-------------------------hhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKP-------------------------VSEY  100 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~-------------------------l~~~  100 (313)
                      .++..+|.||++| ++|....|.|.+++.++.+. +.|+.|+++...   .                         +++.
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKD---EEWLKFIRSKKIGGWLNVRDSKNHTDFKIT  106 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSS---HHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCH---HHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence            4557788899999 99999999999999999986 999999998632   3                         8999


Q ss_pred             hCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          101 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       101 ~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      |||.++  |++++++.++.....+.|..+.+.+.+.+.+.+
T Consensus       107 ~~i~~~--P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          107 YDIYAT--PVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             HCCCSS--CEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             cCcCCC--CEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            999988  999999766655566677666666666665544

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.74  E-value=1.9e-08  Score=79.86  Aligned_cols=89  Identities=11%  Similarity=0.137  Sum_probs=69.5

Q ss_pred             CCCcEEEEEeCCCCcc-chhhhHHHHHHHHHhcC---CCcEEEEEEeCCCcc----------------------------
Q 021368          177 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNE----------------------------  224 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~~~---~~~v~~~~vd~~~~~----------------------------  224 (313)
                      .+++++|+||++||++ |....+.+.++..+++.   ..++.++.|+++...                            
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3689999999999998 99999999999999963   236888888877320                            


Q ss_pred             --cccCCCCcCc---------------eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          225 --HHRAKSDGFP---------------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       225 --~~~~~v~~~P---------------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                        ...|++...|               +++++ ++|..+.   .+.|..+.+.|.+.|.+.+
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTD---YYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEE---EEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEE---EECCCCCHHHHHHHHHHHH
Confidence              1357777777               77777 5666553   6778888999999998875

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.74  E-value=2.4e-09  Score=84.93  Aligned_cols=98  Identities=13%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             ccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccc-hhhhhCCCCCCCcEEEEEcCCCC
Q 021368           42 APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKP-VSEYFGITGEAPKVLAYTGNDDA  119 (313)
Q Consensus        42 ~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~-l~~~~~v~~~~~P~i~~~~~~~~  119 (313)
                      +......+.+++|.||++| ++|+.+.|.|.+++..+...+.|+.||++..   .. ++..+++.....|++++++.++.
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~---~~~~~~~~~~~~~~~Pt~~~~d~~G~  115 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDE---EEPKDEDFSPDGGYIPRILFLDPSGK  115 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGG---GSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCC---chHHHHHhcccCCcCCeEEEECCCCC
Confidence            3334456678899999999 9999999999998877765677888888873   34 78889984422399999954333


Q ss_pred             ceeccCC----------CCCHHHHHHHHHHHhc
Q 021368          120 KKHILDG----------ELTLDKIKTFGEDFLE  142 (313)
Q Consensus       120 ~~~~~~g----------~~~~~~i~~fi~~~~~  142 (313)
                      ....+.|          ..+.+.|.+++.+.+.
T Consensus       116 ~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          116 VHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             BCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            3334455          3789999999998875

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.72  E-value=2.2e-08  Score=78.83  Aligned_cols=89  Identities=7%  Similarity=0.058  Sum_probs=69.8

Q ss_pred             CCCcEEEEEeCCCCcc-chhhhHHHHHHHHHhcCC---CcEEEEEEeCCCcc----------------------------
Q 021368          177 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNE----------------------------  224 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~~----------------------------  224 (313)
                      .+++++|+||++||++ |....+.+.++..+++..   .++.++.++++...                            
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 999999999999998641   36888888876521                            


Q ss_pred             --cccCCCCcCc---------------eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          225 --HHRAKSDGFP---------------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       225 --~~~~~v~~~P---------------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                        ...|++...|               +++++ ++|..+.   .+.|..+.+.|.+.|.+.+
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLD---YFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEE---EEETTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEE---EeCCCCCHHHHHHHHHHHH
Confidence              1467888888               66666 5666553   6778888999999998765

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.72  E-value=6.7e-08  Score=73.14  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=73.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc-------------------------ccccchhhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-------------------------DVGKPVSEYF  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~-------------------------~~~~~l~~~~  101 (313)
                      .++..+|.||++| ++|....+.+.+++.++.+.+.++.|++...                         +....+++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            4557788899999 9999999999999999887899999965320                         1134788999


Q ss_pred             CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          102 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      |+.++  |++++++.++.....+.|..+.+.+.+++.++
T Consensus       101 ~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          101 GVRSY--PTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TCCSS--SEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             CcccC--CeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            99988  99999976655556678999999999998764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.71  E-value=5.8e-08  Score=78.51  Aligned_cols=89  Identities=13%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-------cc-c-----c-cC--------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------NE-H-----H-RA--------------  228 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~~-~-----~-~~--------------  228 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.++.|+++.       .. .     . .+              
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  123 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  123 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCC
Confidence            4789999999999999999999999999999875 47777777652       00 0     1 11              


Q ss_pred             ------------------CCCcCc---eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          229 ------------------KSDGFP---TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       229 ------------------~v~~~P---~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                                        ++..+|   +++++ ++|..+.   .+.|..+.+.|.+.|.+.+.
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~---~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          124 ENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVE---RFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             C-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEE---EECTTCCHHHHHHHHHHHC-
T ss_pred             cchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEE---EECCCCCHHHHHHHHHHHHh
Confidence                              233566   87777 5666554   67888899999999998875

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.71  E-value=3e-09  Score=91.51  Aligned_cols=72  Identities=18%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC------ccc--ccCCCCcCceEEEEeCCCCCcCceee
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------NEH--HRAKSDGFPTILFFPAGNKSFDPINV  251 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~------~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y  251 (313)
                      ..+++||++||++|+.+.|.|+++++.+.        .+||+.      +..  ++++++++||+++  +|+      .|
T Consensus       199 ~~vV~F~A~WC~~Ck~l~p~le~lA~~l~--------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~------~~  262 (291)
T 3kp9_A          199 IGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR------TY  262 (291)
T ss_dssp             TTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE------EE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHcC--------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE------Ee
Confidence            34799999999999999999999986542        355552      222  6899999999655  553      59


Q ss_pred             ccCcCHHHHHHHHHhc
Q 021368          252 DVDRTVVALYKFLKKN  267 (313)
Q Consensus       252 ~g~~~~~~l~~fi~~~  267 (313)
                      .|..+.+.|.+|+.-.
T Consensus       263 ~G~~~~~~L~~~l~~~  278 (291)
T 3kp9_A          263 TGVRSLEALAVASGYP  278 (291)
T ss_dssp             ESCCCHHHHHHHTCCC
T ss_pred             cCCCCHHHHHHHHCCC
Confidence            9999999999998543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.70  E-value=2.1e-09  Score=79.86  Aligned_cols=79  Identities=19%  Similarity=0.348  Sum_probs=55.9

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-------ccccCCCCcCceEEEEeCCCCCcCcee
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------EHHRAKSDGFPTILFFPAGNKSFDPIN  250 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------~~~~~~v~~~P~i~~~~~g~~~~~~~~  250 (313)
                      ++.+++ ||++||++|+.+.+.+.+++.      .+.++.+|.+..       ....+++.++|++  |.+|..+.   .
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~------~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~---~   86 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA------SYKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIG---G   86 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTC------CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEE---C
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCC------CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEC---C
Confidence            345555 999999999999999988843      245666665554       1157899999999  45776553   4


Q ss_pred             eccCc---CHHHHHHHHHhcC
Q 021368          251 VDVDR---TVVALYKFLKKNA  268 (313)
Q Consensus       251 y~g~~---~~~~l~~fi~~~~  268 (313)
                      +.|..   +.+.|.+||.+..
T Consensus        87 ~~~~~~~~~~~~l~~~l~~~g  107 (116)
T 2e7p_A           87 CDTVVEKHQRNELLPLLQDAA  107 (116)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHHHHHHhCChHHHHHHHcc
Confidence            55533   5567889998753

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.70  E-value=2.3e-08  Score=79.57  Aligned_cols=88  Identities=15%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC--------ccc-----------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--------NEH-----------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--------~~~-----------------------  225 (313)
                      .+++++|+||++||++|+ .++.+.++..++++. ++.+..++++.        ...                       
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE-GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG-TEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            478999999999999999 999999999999864 58888786531        000                       


Q ss_pred             ------------ccCCCCcCc------eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          226 ------------HRAKSDGFP------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       226 ------------~~~~v~~~P------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                                  ..+++.++|      +++++ ++|..+.   .+.|..+.+.|.+.|.+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYE---RYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEE---EECTTSCGGGGHHHHHHHHT
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEE---EeCCCCCHHHHHHHHHHHHH
Confidence                        025677889      77777 6666654   67787788888888887753

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.69  E-value=1.4e-08  Score=79.99  Aligned_cols=108  Identities=14%  Similarity=0.075  Sum_probs=81.3

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCC--------------------
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN--------------------   90 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~--------------------   90 (313)
                      .+..++.+.+......+..++|.||++| ++|+...|.|.+++.++.. .+.|+.|+++.                    
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence            4556666666544445667888899999 9999999999999998753 36666665421                    


Q ss_pred             -----cccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           91 -----EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        91 -----~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                           .+.+..+++.|+|.++  |++++++.++.....+.|..+.+.|.+++.+.+.
T Consensus       102 ~~~~~~d~~~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          102 KLPVVTDNGGTIAQNLNISVY--PSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TSCEEECTTCHHHHHTTCCSS--SEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             cceEEEcCchHHHHHcCCCcc--ceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                 0014578999999988  9998886655555667788999999999998865

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.69  E-value=1.5e-08  Score=74.82  Aligned_cols=86  Identities=10%  Similarity=-0.069  Sum_probs=68.8

Q ss_pred             CccEEEEEeeC-CchhhhhHHHHHHHHhccCe-----EEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368           50 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-----LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI  123 (313)
Q Consensus        50 ~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-----v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~  123 (313)
                      ...+|+||++| ++|+.+.+.   ++..+...     +.+..||.+... ...++..++|.+.  ||+++|++|.. ..+
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~~---i~~~~~~~a~~~~~~l~~vdv~~~~-~~~la~~~~V~g~--PT~i~f~~G~e-v~R   91 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDAE---IAPQYPLTDEGRAAPVQRLQMRDPL-PPGLELARPVTFT--PTFVLMAGDVE-SGR   91 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHHH---TTTTGGGSHHHHHSCEEEEETTSCC-CTTCBCSSCCCSS--SEEEEEETTEE-EEE
T ss_pred             CCEEEEEECCCCHHHHHHHHH---HHhhHHHhhhcccceEEEEECCCCC-chhHHHHCCCCCC--CEEEEEECCEE-Eee
Confidence            46788999999 999999864   44445443     778889998854 4578899999987  99999996653 346


Q ss_pred             cCCCCCHHHHHHHHHHHhc
Q 021368          124 LDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       124 ~~g~~~~~~i~~fi~~~~~  142 (313)
                      +.|.+..+.|..++.+.+.
T Consensus        92 i~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           92 LEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             EECCCCHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHh
Confidence            7899999999999998865

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.15  E-value=1.9e-09  Score=82.91  Aligned_cols=69  Identities=19%  Similarity=0.371  Sum_probs=54.1

Q ss_pred             CCC-cEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCcc---------------------------ccc
Q 021368          177 ESK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE---------------------------HHR  227 (313)
Q Consensus       177 ~~k-~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~---------------------------~~~  227 (313)
                      .++ +++|+||++||++|+.+.+.+.+++.+++.. .++.++.++++...                           ...
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            356 9999999999999999999999999988532 25677777666431                           156


Q ss_pred             CCCCcCceEEEEe-CCCCC
Q 021368          228 AKSDGFPTILFFP-AGNKS  245 (313)
Q Consensus       228 ~~v~~~P~i~~~~-~g~~~  245 (313)
                      |++.++|+++++. +|..+
T Consensus       104 ~~v~~~P~~~lid~~G~i~  122 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLI  122 (143)
Confidence            7899999999996 66654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.68  E-value=1.9e-07  Score=71.83  Aligned_cols=90  Identities=9%  Similarity=0.017  Sum_probs=71.1

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhc-cCe-EEEEEEeCCCccc----------------------ccchhhhhC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF-KGK-LIFVYVQMDNEDV----------------------GKPVSEYFG  102 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~-~~~-v~f~~vd~~~~~~----------------------~~~l~~~~~  102 (313)
                      .++.++|.||++| ++|+...|.|.+++.++ .+. +.|+.|+++....                      +..+++.||
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4567888899999 99999999999999999 664 9999998876210                      347899999


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      |.++  |++++++.++.....+.   +.+.+.+++.+++.
T Consensus       112 v~~~--P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTL--PTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSS--SEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCc--CEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            9988  99988866553333322   89999999998865

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.67  E-value=1.9e-08  Score=72.66  Aligned_cols=78  Identities=19%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC--Cccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT--TNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g  253 (313)
                      ..+.+++|+++||++|+.+.+.+.+++.      .+.+..+|++  .+..  .+++ .++|+++  .+|..     ...+
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g~~-----~~~~   80 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPENSTWYERYK-FDIPVFH--LNGQF-----LMMH   80 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESSSE-----EEES
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECCEE-----EEec
Confidence            4578999999999999999998876632      3789999998  4432  5789 9999863  46654     2345


Q ss_pred             CcCHHHHHHHHHhcCC
Q 021368          254 DRTVVALYKFLKKNAS  269 (313)
Q Consensus       254 ~~~~~~l~~fi~~~~~  269 (313)
                      ..+.+.|.++|.+.+.
T Consensus        81 g~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           81 RVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             SCCHHHHHHHHHSSSC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            5888999999987753

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.66  E-value=1.3e-07  Score=74.60  Aligned_cols=91  Identities=8%  Similarity=0.129  Sum_probs=71.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC------------------Ccc----------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD------------------NED----------------   92 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~------------------~~~----------------   92 (313)
                      .++..+|.||+.| ++|....|.|.+++.++. .+.|+.|+++                  ...                
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            4567788899999 999999999999999999 6999999987                  210                


Q ss_pred             ---cccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCC-CHHHHHHHHHHHhcC
Q 021368           93 ---VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFLEG  143 (313)
Q Consensus        93 ---~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~-~~~~i~~fi~~~~~~  143 (313)
                         +...+++.|+|.++  |++++++.++...+  .|.. +.+.|.+++.+.++|
T Consensus       115 ~~~d~~~~~~~~~v~~~--P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~g  165 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVRSI--DYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQGG  165 (165)
T ss_dssp             EEECCSHHHHHTTCCSS--SEEEEEETTCCEEE--EEESCCHHHHHHHHHHC---
T ss_pred             EEeChHHHHHHhCCCCc--eEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhcC
Confidence               00378899999988  99989876553333  6777 999999999987653

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.66  E-value=6.7e-08  Score=76.06  Aligned_cols=87  Identities=13%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             CCCc-EEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC---------------------ccc--ccCCCC
Q 021368          177 ESKD-VLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT---------------------NEH--HRAKSD  231 (313)
Q Consensus       177 ~~k~-~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------------------~~~--~~~~v~  231 (313)
                      .++. ++|+|| ++||++|....+.+.++..++++. ++.++.|+++.                     ...  ..|++.
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY-DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK  105 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT-CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence            3566 999999 999999999999999999999864 58888888762                     111  567888


Q ss_pred             c----CceEEEEe-CCCCCcCceeeccC----cCHHHHHHHHHhc
Q 021368          232 G----FPTILFFP-AGNKSFDPINVDVD----RTVVALYKFLKKN  267 (313)
Q Consensus       232 ~----~P~i~~~~-~g~~~~~~~~y~g~----~~~~~l~~fi~~~  267 (313)
                      +    +|+++++. +|..+.   .+.|.    ...+.+++.|++.
T Consensus       106 ~~~~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          106 GFILPARITFVIDKKGIIRH---IYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             CSSSCCCEEEEECTTSBEEE---EEECSSCTTHHHHHHHHHHHHH
T ss_pred             CcCcccceEEEECCCCEEEE---EEecCCCCCcCHHHHHHHHHHh
Confidence            8    99999995 555543   55562    2356666666553

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.66  E-value=1.8e-07  Score=72.45  Aligned_cols=94  Identities=14%  Similarity=0.127  Sum_probs=74.1

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc-------------------cccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~-------------------~~~~l~~~~~v~~~  106 (313)
                      .++..+|.||++| ++|....+.|.+++.++.+. +.|+.|+++...                   ....+++.|||.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            4557788899999 99999999999999999986 999999988632                   01267888999988


Q ss_pred             CCcEEEEEcCCCCceeccCCC--CCHHHHHHHHHHHhcC
Q 021368          107 APKVLAYTGNDDAKKHILDGE--LTLDKIKTFGEDFLEG  143 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~--~~~~~i~~fi~~~~~~  143 (313)
                        |++++++.++...+.+.|.  .+.+.|.++|.+.+.+
T Consensus       107 --P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~  143 (152)
T 3gl3_A          107 --PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGG  143 (152)
T ss_dssp             --SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred             --CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHcc
Confidence              9988887665455555564  4568999999998764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.65  E-value=5.3e-08  Score=77.04  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-------cc-c-----c-cC--------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------NE-H-----H-RA--------------  228 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~~-~-----~-~~--------------  228 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.++.|+++.       .. .     . ++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            4789999999999999999999999999999864 58888898752       00 0     1 11              


Q ss_pred             ---------------CC--CcCc---eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          229 ---------------KS--DGFP---TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       229 ---------------~v--~~~P---~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                                     ++  .++|   +++++ ++|..+.   .+.|..+.+.|.++|.+.+.
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVD---RYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEE---EECTTSCGGGGHHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEE---eeCCCCCHHHHHHHHHHHhh
Confidence                           23  5678   77777 5666553   67788888889999988764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.64  E-value=2.5e-08  Score=78.89  Aligned_cols=88  Identities=9%  Similarity=-0.016  Sum_probs=65.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc----c-----ccc--------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----E-----HHR--------------------  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~-----~~~--------------------  227 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.++.++++..    .     ...                    
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK-GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC-CeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            4789999999999999999999999999999764 588888887530    0     000                    


Q ss_pred             ------C--------C-----CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          228 ------A--------K-----SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       228 ------~--------~-----v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                            +        +     +..+|+++++ ++|..+.   .+.|..+.+.|.+.|.+.+
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVK---RYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEE---EECTTSCGGGGHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEE---EcCCCCCHHHHHHHHHHHh
Confidence                  1        2     3345777777 5666553   6778777788888887764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.64  E-value=3.9e-08  Score=79.69  Aligned_cols=89  Identities=15%  Similarity=0.075  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-------c-cc----c------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------N-EH----H------------------  226 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~-~~----~------------------  226 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.++.|+++.       . ..    .                  
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            4789999999999999999999999999999864 48888888762       0 00    0                  


Q ss_pred             -------------cCCCCcCc------eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          227 -------------RAKSDGFP------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       227 -------------~~~v~~~P------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                                   .+++.++|      +++++ ++|..+.   .+.|..+.+.|.+.|.+.+.
T Consensus       126 ~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVE---RFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEE---EECTTCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence                         13667788      66666 5666653   67788888999999988753

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.64  E-value=2.5e-07  Score=71.84  Aligned_cols=93  Identities=18%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCccc----------------------ccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDV----------------------GKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~----------------------~~~l~~~~~v  103 (313)
                      .++.++|.||++| ++|+...|.+.+++.++.+. +.|+.|+++....                      +..+++.|||
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            4557788899999 99999999999999999875 9999999986210                      2578899999


Q ss_pred             CCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021368          104 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                      .++  |++++++.++.....+   .+.+.+.+++.+++.+..
T Consensus       108 ~~~--P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~~~~  144 (152)
T 2lrn_A          108 VGF--PHIILVDPEGKIVAKE---LRGDDLYNTVEKFVNGAK  144 (152)
T ss_dssp             CSS--CEEEEECTTSEEEEEC---CCTTHHHHHHHHHHTSSS
T ss_pred             CcC--CeEEEECCCCeEEEee---CCHHHHHHHHHHHHhhcc
Confidence            988  9988886554333332   466789999999887543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.63  E-value=1.4e-07  Score=73.84  Aligned_cols=93  Identities=8%  Similarity=0.077  Sum_probs=75.6

Q ss_pred             CCCccEEEEEeeC-Cchhh-hhHHHHHHHHhccCe-EEEEEEeCCCc-------------------------ccccc---
Q 021368           48 SPIKNQLLLFAVS-NDSEK-LLPVFEEAAKSFKGK-LIFVYVQMDNE-------------------------DVGKP---   96 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~-~~~~~~~~a~~~~~~-v~f~~vd~~~~-------------------------~~~~~---   96 (313)
                      .++.++|.||++| ++|.. ..|.+.+++.+|.++ +.|+.|+++..                         +....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            4567888899999 99999 599999999999875 99999986310                         00223   


Q ss_pred             ---hhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           97 ---VSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        97 ---l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                         +++.|||.++  |++++++.++.....+.|..+.+.|.++|.+.++
T Consensus       109 ~~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          109 IPSTMKKYRLEGT--PSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SCHHHHHTTCCSS--SEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hhhHHHhcccCcc--ceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence               8899999988  9998997666566667899999999999999886

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.63  E-value=3.4e-08  Score=79.43  Aligned_cols=88  Identities=13%  Similarity=0.059  Sum_probs=66.6

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-------c-c-----cc----------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------E-H-----HR----------------  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------~-~-----~~----------------  227 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.++.++++..       . .     .+                
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH-HFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            4689999999999999999999999999999864 588888887530       0 0     11                


Q ss_pred             --------CCCCcCc-------eEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          228 --------AKSDGFP-------TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       228 --------~~v~~~P-------~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                              +.+..+|       +.+++ ++|..+.   .+.|..+.+.|.+.|.+.+
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVG---AWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEE---EECTTSCHHHHHHHHHTTC
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCEEE---EeCCCCCHHHHHHHHHHHh
Confidence                    1144568       66666 6666653   6788888999999998765

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.63  E-value=7.8e-08  Score=74.80  Aligned_cols=90  Identities=10%  Similarity=0.067  Sum_probs=74.2

Q ss_pred             CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc------------------------ccccchhhhhCCC
Q 021368           50 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------------------------DVGKPVSEYFGIT  104 (313)
Q Consensus        50 ~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~------------------------~~~~~l~~~~~v~  104 (313)
                      +..+|.||++| +.|....+.|.+++.++  .+.|+.|+++..                        .....+++.|||.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            57788899999 99999999999999999  488889998210                        0156889999999


Q ss_pred             CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          105 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      ++  |++++++.++.....+.|..+.+.|.++|++.+.+
T Consensus       109 ~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~  145 (154)
T 3ia1_A          109 GQ--PWTFVVDREGKVVALFAGRAGREALLDALLLAGAD  145 (154)
T ss_dssp             SS--CEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred             cc--cEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCc
Confidence            88  99888876655556678889999999999998763

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.59  E-value=9.4e-08  Score=76.88  Aligned_cols=87  Identities=11%  Similarity=-0.018  Sum_probs=64.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc--------cc-----cc----------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--------EH-----HR----------------  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~--------~~-----~~----------------  227 (313)
                      .+++++|+||++||++|....+.+.++..++++. ++.++.++++..        ..     .+                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC-GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC-CeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCc
Confidence            4689999999999999999999999999999864 588888887520        00     00                


Q ss_pred             -----C----------C-----CCcCceEEEE-eCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          228 -----A----------K-----SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       228 -----~----------~-----v~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                           |          +     +...|+++++ ++|..+.   .+.|..+.+.|.++|++.
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVK---RYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEE---EECTTSCTHHHHTTSGGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEE---EeCCCCCHHHHHHHHHHh
Confidence                 1          2     2335898888 5666553   677877888888877654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.58  E-value=7.5e-08  Score=77.76  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------------------------cc---ccC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------------EH---HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------------------------~~---~~~  228 (313)
                      .+++++|+|| ++||++|....+.+.++..+++.. ++.++.++++..                        ..   ..|
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            3689999999 999999999999999999999754 588888887641                        01   457


Q ss_pred             CCC------cCceEEEE-eCCCCCcCceeeccCc----CHHHHHHHHHhcC
Q 021368          229 KSD------GFPTILFF-PAGNKSFDPINVDVDR----TVVALYKFLKKNA  268 (313)
Q Consensus       229 ~v~------~~P~i~~~-~~g~~~~~~~~y~g~~----~~~~l~~fi~~~~  268 (313)
                      ++.      .+|+++++ ++|..+.   .+.|..    +.+.|.+.|++..
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVIQA---IEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEE---EEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHHh
Confidence            887      89999999 5565543   455532    6788888888765

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.56  E-value=1.3e-07  Score=77.01  Aligned_cols=89  Identities=11%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------------------------cc---ccC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------------EH---HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------------------------~~---~~~  228 (313)
                      .+++++|+|| ++||++|....+.+.++..+++.. ++.++.|+++..                        ..   ..|
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  122 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  122 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHh
Confidence            3689999999 999999999999999999999764 588888887641                        00   356


Q ss_pred             CCC-----cCceEEEEe-CCCCCcCceeeccCc----CHHHHHHHHHhcCC
Q 021368          229 KSD-----GFPTILFFP-AGNKSFDPINVDVDR----TVVALYKFLKKNAS  269 (313)
Q Consensus       229 ~v~-----~~P~i~~~~-~g~~~~~~~~y~g~~----~~~~l~~fi~~~~~  269 (313)
                      ++.     .+|+++++. +|..+.   .+.|..    +.+.|.+.|++...
T Consensus       123 ~v~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          123 GVLNADGVADRVTFIVDPNNEIQF---VSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CCcccCCCccceEEEEcCCCeEEE---EEecCCCCCCCHHHHHHHHHHHhh
Confidence            888     899999995 555443   454533    78999999988764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.56  E-value=1.3e-07  Score=73.56  Aligned_cols=91  Identities=16%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------ccccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~  106 (313)
                      .+...+|.||++| ++|....|.|.+++.+  +.+.|+.|++++.                    +.+..+++.|||.++
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            4567788899999 9999999999999887  5588888876431                    114578899999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |++++++.++.....+.|..+.+.+.+++.+.+.
T Consensus       119 --P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          119 --PETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             --CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             --CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence              9777776555455567888999999999988764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.55  E-value=2.8e-07  Score=71.96  Aligned_cols=94  Identities=11%  Similarity=0.049  Sum_probs=75.3

Q ss_pred             CCCccEEEEEeeC-Cchhhh-hHHHHHHHHhccC-eEEEEEEeCCCc-------------------------cccc----
Q 021368           48 SPIKNQLLLFAVS-NDSEKL-LPVFEEAAKSFKG-KLIFVYVQMDNE-------------------------DVGK----   95 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~-~~~~~~~a~~~~~-~v~f~~vd~~~~-------------------------~~~~----   95 (313)
                      .++.++|.||+.| ++|... .|.|.+++.+|.+ .+.|+.|+++..                         +...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            4557788899999 999996 9999999999984 599999986410                         0011    


Q ss_pred             -chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368           96 -PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus        96 -~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                       .+++.|||.++  |++++++.++.....+.|..+.+.|.+++.+.++.
T Consensus       107 ~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          107 PRTMAAYQMRGT--PSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             CHHHHHTTCCSS--SEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCCC--CEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             48899999988  98888876665566678899999999999999863

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.55  E-value=8.2e-08  Score=78.29  Aligned_cols=88  Identities=8%  Similarity=0.070  Sum_probs=67.6

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc----------------------------cc--
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------------------EH--  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------------~~--  225 (313)
                      .+++++|+|| ++||++|....+.+.++..++++. ++.+..|+++..                            ..  
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            4689999999 999999999999999999998754 588888887641                            01  


Q ss_pred             ccCCCC-----cCceEEEEe-CCCCCcCceeeccCc----CHHHHHHHHHhcC
Q 021368          226 HRAKSD-----GFPTILFFP-AGNKSFDPINVDVDR----TVVALYKFLKKNA  268 (313)
Q Consensus       226 ~~~~v~-----~~P~i~~~~-~g~~~~~~~~y~g~~----~~~~l~~fi~~~~  268 (313)
                      ..|++.     .+|+++++. +|..+.   .+.|..    +.+.|.+.|.+..
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRH---AVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEE---EEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHHH
Confidence            457888     899999995 555443   454533    6788999888764

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.55  E-value=1.4e-07  Score=77.62  Aligned_cols=44  Identities=20%  Similarity=0.185  Sum_probs=39.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      .+++++|+||++||++|+..+|.+.++..++++. .+.+..|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECC
Confidence            4689999999999999999999999999999864 5888888875

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.54  E-value=3.5e-07  Score=71.00  Aligned_cols=94  Identities=14%  Similarity=0.171  Sum_probs=72.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc--------------------cccchhhhhCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED--------------------VGKPVSEYFGITG  105 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~--------------------~~~~l~~~~~v~~  105 (313)
                      .++..+|.||++| +.|....+.+.+++.++.+ .+.|+.|+++...                    ....+++.|||.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            4567788899999 9999999999999999987 6899999988730                    1235889999998


Q ss_pred             CCCcEEEEEcCCCCceeccCCCC--CHHHHHHHHHHHhcC
Q 021368          106 EAPKVLAYTGNDDAKKHILDGEL--TLDKIKTFGEDFLEG  143 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~~~~g~~--~~~~i~~fi~~~~~~  143 (313)
                      +  |++++++.++...+.+.|..  +.+.+.+++.++..+
T Consensus       107 ~--P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A          107 V--PETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             B--CEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC---
T ss_pred             C--CeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHH
Confidence            8  97777766554555556654  677999999887653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.53  E-value=1.4e-07  Score=68.62  Aligned_cols=76  Identities=12%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ..+++|+++| +.|+.+.+.+++++.++.  +.|..||.++   ++.+..+||++ .  |+++++.+|.  . .+.|..+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~---d~~l~~~ygv~-V--P~l~~~~dG~--~-v~~g~~~   98 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDG---NEHLTRLYNDR-V--PVLFAVNEDK--E-LCHYFLD   98 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTT---CHHHHHHSTTS-C--SEEEETTTTE--E-EECSSCC
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCC---CHHHHHHhCCC-C--ceEEEEECCE--E-EEecCCC
Confidence            4578899999 999999999999999875  8899999998   56899999996 7  9998887664  2 2467889


Q ss_pred             HHHHHHHH
Q 021368          130 LDKIKTFG  137 (313)
Q Consensus       130 ~~~i~~fi  137 (313)
                      .+.|.+|+
T Consensus        99 ~~~L~~~L  106 (107)
T 2fgx_A           99 SDVIGAYL  106 (107)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998887

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.53  E-value=4.2e-07  Score=72.89  Aligned_cols=91  Identities=4%  Similarity=-0.009  Sum_probs=70.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-E------EEEEEeCCCcccccchhhhh------------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-L------IFVYVQMDNEDVGKPVSEYF------------------  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v------~f~~vd~~~~~~~~~l~~~~------------------  101 (313)
                      .++.++|.||++| ++|....|.|.+++.+|.+. +      .|+.|+++..  .+..++.|                  
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~--~~~~~~~~~~~~~~~~~~~~d~~~~~  135 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY--SRDIAQDFVTDNGLDYPSIYDPPFMT  135 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCC--CHHHHHHHHHHTTCCSCEEECTTCGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCC--CHHHHHHHHHHcCCCccEEECCcchH
Confidence            4557788899999 99999999999999999875 7      9999999872  12334433                  


Q ss_pred             -------CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          102 -------GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       102 -------~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                             ++.++  |++++++.++.....+.|..+.+.|.+++.+++.
T Consensus       136 ~~~~~~~~v~~~--P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          136 AASLGGVPASVI--PTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGGTTTCCTTCC--SEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCCC--CeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                   56767  9777777665556677898999999999999875

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.52  E-value=1.8e-08  Score=69.62  Aligned_cols=59  Identities=14%  Similarity=0.240  Sum_probs=42.1

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCCCCcCceEEEEeCCC
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~v~~~P~i~~~~~g~  243 (313)
                      .+++||++||++|+.+.+.+.+++..+..  .+.+..+|.+ ....  .++++.++|++++  +|.
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKY--TVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTE--EEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCC--eEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCE
Confidence            47889999999999999999988655422  3445544432 1221  5789999999987  554

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.52  E-value=1.9e-07  Score=73.13  Aligned_cols=86  Identities=12%  Similarity=0.068  Sum_probs=63.8

Q ss_pred             CC-cEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------ccc--ccCCC
Q 021368          178 SK-DVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------NEH--HRAKS  230 (313)
Q Consensus       178 ~k-~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~~~--~~~~v  230 (313)
                      ++ +++|+|| ++||++|....+.+.++..++++. ++.++.++++.                       +..  ..|++
T Consensus        35 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v  113 (160)
T 1xvw_A           35 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGV  113 (160)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCC
Confidence            45 8999998 999999999999999999998754 58888888763                       111  56788


Q ss_pred             C----cCc--eEEEE-eCCCCCcCceeeccCc----CHHHHHHHHHhc
Q 021368          231 D----GFP--TILFF-PAGNKSFDPINVDVDR----TVVALYKFLKKN  267 (313)
Q Consensus       231 ~----~~P--~i~~~-~~g~~~~~~~~y~g~~----~~~~l~~fi~~~  267 (313)
                      .    ++|  +++++ ++|..+.   .+.|..    ..+.+++.|.+.
T Consensus       114 ~~~~~~~p~~~~~lid~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l  158 (160)
T 1xvw_A          114 FNEQAGIANRGTFVVDRSGIIRF---AEMKQPGEVRDQRLWTDALAAL  158 (160)
T ss_dssp             EETTTTEECSEEEEECTTSBEEE---EEECCTTCCCCHHHHHHHHHHT
T ss_pred             ccccCCCeeeeEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence            7    889  67776 5565543   455532    567788877654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.49  E-value=1.3e-07  Score=66.25  Aligned_cols=74  Identities=12%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  131 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~  131 (313)
                      +++|+++| +.|+.+.|.|++++.++     +..||.++   ++++..+||++ .  |++++ .+|.  ..  .|..+.+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~---~~~l~~~~g~~-v--Ptl~~-~~G~--~v--~g~~~~~   66 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDD---DAALESAYGLR-V--PVLRD-PMGR--EL--DWPFDAP   66 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTT---CHHHHHHHTTT-C--SEEEC-TTCC--EE--ESCCCHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCC---CHHHHHHhCCC-c--CeEEE-ECCE--EE--eCCCCHH
Confidence            67899999 99999999999988765     57899998   66999999997 7  99976 4443  22  2788999


Q ss_pred             HHHHHHHHHhc
Q 021368          132 KIKTFGEDFLE  142 (313)
Q Consensus       132 ~i~~fi~~~~~  142 (313)
                      .|.+++...+.
T Consensus        67 ~L~~~l~~~~~   77 (87)
T 1ttz_A           67 RLRAWLDAAPH   77 (87)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.49  E-value=1.8e-07  Score=74.96  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=39.8

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.+..|.++.
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~   81 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS-HFSVLAFPCNQ   81 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT-SEEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC-CeEEEEEECCc
Confidence            4789999999999999999999999999999874 58888887653

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.47  E-value=1e-07  Score=66.33  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=55.3

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----c--ccCC--CCcCceEEEEeCCCCCcCceeec
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----H--HRAK--SDGFPTILFFPAGNKSFDPINVD  252 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~--~~~~--v~~~P~i~~~~~g~~~~~~~~y~  252 (313)
                      .++.|+++||++|+.+.+.+.+++..+.   ++.+..+|++.+.    .  ..++  +.++|+++  .+|..+      .
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~--~~g~~i------~   70 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQQHI------G   70 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETTEEE------E
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEEecccChHHHHHHHHHhCCCCceeCeEE--ECCEEE------E
Confidence            3678999999999999999999998765   4788888886643    1  4567  89999984  355432      2


Q ss_pred             cCcCHHHHHHHHHhcC
Q 021368          253 VDRTVVALYKFLKKNA  268 (313)
Q Consensus       253 g~~~~~~l~~fi~~~~  268 (313)
                      |   .+.|.+++.++.
T Consensus        71 ~---~~~l~~~~~~~~   83 (85)
T 1ego_A           71 G---YTDFAAWVKENL   83 (85)
T ss_dssp             S---SHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHhc
Confidence            2   257888887653

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.47  E-value=3.5e-07  Score=72.26  Aligned_cols=90  Identities=11%  Similarity=0.058  Sum_probs=69.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------ccccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~  106 (313)
                      .++..+|.||++| ++|....|.|.+++.+  + +.|+.|++++.                    +.+..+++.|||.++
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~-v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  126 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  126 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--T-CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--C-CEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcccc
Confidence            5667888899999 9999999999999987  4 77777774321                    115578999999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+.++++.++...+.+.|..+.+.+.+++.+.+.
T Consensus       127 --P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          127 --PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             --SEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             --CEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence              9666666555455567788999999999888764

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=1.9e-06  Score=66.57  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             CCCccEEEEEeeC-Cc--hhhhhHHHHHHHHhc-cCe-EEEEEEeCCCccc----------------------ccchhhh
Q 021368           48 SPIKNQLLLFAVS-ND--SEKLLPVFEEAAKSF-KGK-LIFVYVQMDNEDV----------------------GKPVSEY  100 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~--c~~~~~~~~~~a~~~-~~~-v~f~~vd~~~~~~----------------------~~~l~~~  100 (313)
                      .++..+|.||++| ++  |....|.+.++..+| ++. +.|+.|+++....                      ...+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            3557788899999 99  999999999999999 654 9999999886310                      2378899


Q ss_pred             hCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          101 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       101 ~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      |||.+.  |++++++.++.....+   .+.+.+.+.+.+.+.
T Consensus       112 ~~v~~~--P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          112 YSIYKI--PANILLSSDGKILAKN---LRGEELKKKIENIVE  148 (150)
T ss_dssp             TTCCSS--SEEEEECTTSBEEEES---CCHHHHHHHHHHHHH
T ss_pred             cCCCcc--CeEEEECCCCEEEEcc---CCHHHHHHHHHHHHh
Confidence            999988  9998997655433333   388889988888764

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.45  E-value=8.2e-07  Score=74.68  Aligned_cols=55  Identities=16%  Similarity=0.100  Sum_probs=38.7

Q ss_pred             CCccEEEEE-eeC-Cchh-hhhHHHHHHHHhccC-eE-EEEEEeCCCcccccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSE-KLLPVFEEAAKSFKG-KL-IFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~-~~~~~~~~~a~~~~~-~v-~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      ++..++.|| +.| +.|. ...|.|.+++.+|.+ .+ .++.|..+.......+++++++
T Consensus        33 gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~   92 (241)
T 1nm3_A           33 NKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKS   92 (241)
T ss_dssp             TSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCC
Confidence            446677788 899 9999 999999999999874 37 7888876642213334444444

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.45  E-value=7.1e-07  Score=72.30  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=74.6

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc--------------------------ccccchhhhhC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------------------------DVGKPVSEYFG  102 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~--------------------------~~~~~l~~~~~  102 (313)
                      .++|.||++| ++|....|.|.+++.++.++ +.|+.|+++..                          +.+..+++.|+
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  127 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYD  127 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhC
Confidence            3788899999 99999999999999999874 99999998531                          11457889999


Q ss_pred             CCCCCCcEEEEEcCCCCceec---------cCCCCCHHHHHHHHHHHhcCCC
Q 021368          103 ITGEAPKVLAYTGNDDAKKHI---------LDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~---------~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                      |...  |++++++.++...+.         +.|..+.+.|.+.|++.+.++.
T Consensus       128 v~~~--P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A          128 AACT--PDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             CCEE--SEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             CCCC--CeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence            9988  998888765544444         4577899999999999987543

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.43  E-value=1.2e-07  Score=75.42  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             HHHhcCCCceEEeC--CCcccccccCCCccEEEEEeeC-CchhhhhH-HH--HHHHHhccCeEEEEEEeCCCcccccchh
Q 021368           25 FVFSNKLPLVTIFT--RENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVS   98 (313)
Q Consensus        25 fi~~~~~~~v~~lt--~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~-~~--~~~a~~~~~~v~f~~vd~~~~~~~~~l~   98 (313)
                      ++..+....|....  .+.|......+++++|.|+++| ++|+.+.+ .|  .+++..+++.+.++.||.++   .+.+.
T Consensus        13 yl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de---~~~l~   89 (173)
T 3ira_A           13 YLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREE---RPDID   89 (173)
T ss_dssp             HHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTT---CHHHH
T ss_pred             HHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcc---cCcHH
Confidence            55666555554333  3556666677788999999999 99999999 34  57888888789999999987   56888


Q ss_pred             hhh--------CCCCCCCcEEEEEcCCC
Q 021368           99 EYF--------GITGEAPKVLAYTGNDD  118 (313)
Q Consensus        99 ~~~--------~v~~~~~P~i~~~~~~~  118 (313)
                      +.|        |+.+.  |++++++.++
T Consensus        90 ~~y~~~~q~~~gv~g~--Pt~v~l~~dG  115 (173)
T 3ira_A           90 NIYMTVCQIILGRGGW--PLNIIMTPGK  115 (173)
T ss_dssp             HHHHHHHHHHHSCCCS--SEEEEECTTS
T ss_pred             HHHHHHHHHHcCCCCC--cceeeECCCC
Confidence            888        99988  9999997544

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.41  E-value=1.4e-06  Score=70.17  Aligned_cols=95  Identities=11%  Similarity=0.104  Sum_probs=73.4

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------------ccccchhhhh
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------------DVGKPVSEYF  101 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------------~~~~~l~~~~  101 (313)
                      ++.++|.||++| ++|....+.+.+++.++.+++.|+.|+++..                          +....+++.|
T Consensus        33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  112 (188)
T 2cvb_A           33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAY  112 (188)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHT
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHc
Confidence            457788899999 9999999999999999998799999998431                          1145788999


Q ss_pred             CCCCCCCcEEEEEcCCCCceec--------cCCCCCHHHHHHHHHHHhcCCC
Q 021368          102 GITGEAPKVLAYTGNDDAKKHI--------LDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~~~~~~--------~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                      ||.+.  |++++++.++...+.        +.|..+.+.|.+.|.+.+.++.
T Consensus       113 ~v~~~--P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A          113 RALRT--PEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             TCCEE--SEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             CCCCC--CeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            99988  998888765433332        1133478999999999987644

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.40  E-value=2.1e-07  Score=73.70  Aligned_cols=96  Identities=6%  Similarity=-0.093  Sum_probs=67.7

Q ss_pred             eCCCccccccc-CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhC---CCCCCCcEE
Q 021368           37 FTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFG---ITGEAPKVL  111 (313)
Q Consensus        37 lt~~~~~~~~~-~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~---v~~~~~P~i  111 (313)
                      ++++.+..+.. .+...+|.|+++| ++|+...|.+.+++.++.+ +.|..||.+.   ++.++.+|+   +.+.  |++
T Consensus        41 ~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~-v~~~~v~~d~---~~~~~~~~~~~~v~~i--Pt~  114 (167)
T 1z6n_A           41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN-IELAIISKGR---AEDDLRQRLALERIAI--PLV  114 (167)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT-EEEEEECHHH---HHHHTTTTTTCSSCCS--SEE
T ss_pred             CCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCCC-cEEEEEECCC---CHHHHHHHHHcCCCCc--CeE
Confidence            34444443332 3446677899999 9999999999999999875 9999999887   568888887   9888  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      +++++++.....+ |... ..+..++.++
T Consensus       115 i~~~~~G~~~~~~-g~~p-~~~~~~i~~~  141 (167)
T 1z6n_A          115 LVLDEEFNLLGRF-VERP-QAVLDGGPQA  141 (167)
T ss_dssp             EEECTTCCEEEEE-ESSC-HHHHHHCHHH
T ss_pred             EEECCCCCEEEEE-cCCC-HHHHHhHHHH
Confidence            9998764332333 4333 3344444443

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.40  E-value=1.4e-06  Score=67.96  Aligned_cols=90  Identities=14%  Similarity=0.216  Sum_probs=68.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCCc----------------ccccchhhhhCCCCCCCc
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE----------------DVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~~----------------~~~~~l~~~~~v~~~~~P  109 (313)
                      .++..+|.||++| +.|....+.|.+++.++. ..+.|+.|+++..                +....+++.|||.++  |
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~--P  117 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL--P  117 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS--S
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc--c
Confidence            4557788899999 999999999999999998 3599999999761                113589999999988  9


Q ss_pred             EEEEEcCCCCceeccCCCC--CHHHHHHHHHH
Q 021368          110 VLAYTGNDDAKKHILDGEL--TLDKIKTFGED  139 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~--~~~~i~~fi~~  139 (313)
                      ++++++.++.....+.|..  +..++.+.+.+
T Consensus       118 ~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A          118 DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             eEEEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence            9888876665556666653  44555555544

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.40  E-value=1.2e-06  Score=69.51  Aligned_cols=90  Identities=11%  Similarity=0.159  Sum_probs=66.0

Q ss_pred             CCCcEEEEEeCCCCc-cchhhhHHHHHHHHHhcCCC-cEEEEEEeCCCc---cc------cc------------------
Q 021368          177 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTN---EH------HR------------------  227 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~---~~------~~------------------  227 (313)
                      .+++++|+||++||+ +|....+.+.++...++... ++.++.|+++..   ..      .+                  
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            478999999999999 99999999999999987542 488888887621   00      01                  


Q ss_pred             -------------------CCCCcCceEEEE-eCCCCCcCceeeccCc--CHHHHHHHHHhcCC
Q 021368          228 -------------------AKSDGFPTILFF-PAGNKSFDPINVDVDR--TVVALYKFLKKNAS  269 (313)
Q Consensus       228 -------------------~~v~~~P~i~~~-~~g~~~~~~~~y~g~~--~~~~l~~fi~~~~~  269 (313)
                                         +++...|+++++ ++|..+.   .+.|..  +.+.|.+.|++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~---~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLK---DYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEE---EEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEE---EEcCCCCCCHHHHHHHHHHHHh
Confidence                               234567887777 4555443   566754  58899999998864

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.39  E-value=1.7e-07  Score=80.55  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=60.1

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc---cccchhhhhCCCCCCCcEEEEEcCCCCceeccCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG  126 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~---~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g  126 (313)
                      ..+++||++| ++|+++.|.|+++|++++      .+||+..+   .++++|+++||+++  ||+++  +|+    .+.|
T Consensus       199 ~~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~v--PT~~i--~G~----~~~G  264 (291)
T 3kp9_A          199 IGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSY--PTWII--NGR----TYTG  264 (291)
T ss_dssp             TTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCST--TEEEE--TTE----EEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCccc--CeEEE--CCE----EecC
Confidence            4579999999 999999999999998773      56776321   16799999999999  99644  332    3789


Q ss_pred             CCCHHHHHHHHHH
Q 021368          127 ELTLDKIKTFGED  139 (313)
Q Consensus       127 ~~~~~~i~~fi~~  139 (313)
                      .++.++|.+|+.-
T Consensus       265 ~~~~~~L~~~l~~  277 (291)
T 3kp9_A          265 VRSLEALAVASGY  277 (291)
T ss_dssp             CCCHHHHHHHTCC
T ss_pred             CCCHHHHHHHHCC
Confidence            9999999999754

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.39  E-value=5.5e-07  Score=72.50  Aligned_cols=44  Identities=9%  Similarity=-0.002  Sum_probs=39.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      .+++++|+||++||++|...++.+.++..++++. ++.+..++++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~is~d   91 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC-GLRILAFPCN   91 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC-CeEEEEEECc
Confidence            4689999999999999999999999999999864 5888888875

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.38  E-value=1.8e-06  Score=67.13  Aligned_cols=87  Identities=7%  Similarity=0.001  Sum_probs=67.8

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCccc-----------------cc---chhhhhCCCCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDV-----------------GK---PVSEYFGITGE  106 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~-----------------~~---~l~~~~~v~~~  106 (313)
                      ++.++|.||++| ++|....|.|.+++.+|.+. +.|+.|+++....                 ..   .+++.|||.+.
T Consensus        35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~  114 (152)
T 2lrt_A           35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL  114 (152)
T ss_dssp             GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence            457788899999 99999999999999999875 9999999886420                 00   28899999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFG  137 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi  137 (313)
                        |++++++.++.....+.|..+.++...-.
T Consensus       115 --P~~~lid~~G~i~~~~~g~~~~e~~~~~~  143 (152)
T 2lrt_A          115 --PSVFLVNRNNELSARGENIKDLDEAIKKL  143 (152)
T ss_dssp             --SEEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred             --ceEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence              99989976655566677877766654443

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.37  E-value=1.6e-06  Score=64.92  Aligned_cols=98  Identities=9%  Similarity=0.133  Sum_probs=75.4

Q ss_pred             CCeEEEc-CcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEE
Q 021368          160 GDVKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF  238 (313)
Q Consensus       160 ~~v~~l~-~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~  238 (313)
                      ..+..|+ .+.+.+++ ...+.++|-|+++||+.|   .+.|.++|+.+ .  .+.|+..+. ......+++. .|++++
T Consensus        21 ~~~~~i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~--d~~F~~t~~-~~v~~~~~v~-~~~vvl   91 (124)
T 2l4c_A           21 QEPTWLTDVPAAMEFI-AATEVAVIGFFQDLEIPA---VPILHSMVQKF-P--GVSFGISTD-SEVLTHYNIT-GNTICL   91 (124)
T ss_dssp             CCCEECCSHHHHHHHH-HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T--TSEEEEECC-HHHHHHTTCC-SSCEEE
T ss_pred             CcceEcCCHHHHHHHH-hcCCCEEEEEECCCCChh---HHHHHHHHHhC-C--CceEEEECh-HHHHHHcCCC-CCeEEE
Confidence            3445564 46677776 457789999999999988   67899999998 4  588987753 2233788887 799999


Q ss_pred             EeCCCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          239 FPAGNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      |+....  .++.|.|    ..+.+.|.+||..+.
T Consensus        92 fkkfde--~~~~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           92 FRLVDN--EQLNLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             EETTTT--EEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred             EEcCCC--CceeecCcccCCCCHHHHHHHHHHhc
Confidence            998764  4567887    689999999999873

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.35  E-value=1.6e-06  Score=69.21  Aligned_cols=90  Identities=9%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------ccccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~v~~~  106 (313)
                      .++.++|.||++| ++|....|.|.+++.+  + +.|+.|++++.                    +....+++.|||.++
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~-v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  133 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--G-VVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA  133 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--T-CEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--C-CEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence            3557788899999 9999999999999988  4 77777774221                    114578899999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |++++++.++...+.+.|..+.+.+.+++.+.+.
T Consensus       134 --P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          134 --PETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             --CEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             --CeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence              9887887766566677888999999999888765

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.34  E-value=1.2e-06  Score=67.02  Aligned_cols=89  Identities=10%  Similarity=0.185  Sum_probs=65.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHH---HHHhccC-eEEEEEEeCCCccc-c------------------cch--hhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKG-KLIFVYVQMDNEDV-G------------------KPV--SEYF  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~---~a~~~~~-~v~f~~vd~~~~~~-~------------------~~l--~~~~  101 (313)
                      .++..+|.||++| ++|....|.+.+   +..++++ .+.|+.|+++.... .                  ..+  .+.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            4567788899999 999999999998   8888875 39999998875320 0                  011  3389


Q ss_pred             CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          102 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      ||.++  |++++++.++..  .+ +..+.+.|.+++.+..
T Consensus       106 ~v~~~--P~~~lid~~G~i--~~-~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DIRAT--PTIYLLDGRKRV--IL-KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CCCSS--SEEEEECTTCBE--EE-CSCCHHHHHHHHHC--
T ss_pred             CCCCC--CeEEEECCCCCE--Ee-cCCCHHHHHHHHHHHc
Confidence            99988  999888765432  22 5688999999998764

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.34  E-value=2.2e-06  Score=68.75  Aligned_cols=94  Identities=12%  Similarity=0.094  Sum_probs=72.1

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc-CeEEEEEEeCCCc--ccccchhhhhCCC-------------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE--DVGKPVSEYFGIT-------------------  104 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~-~~v~f~~vd~~~~--~~~~~l~~~~~v~-------------------  104 (313)
                      .++.++|.||+.| ++|....+.|.++..++. ..+.|+.|+++..  .....+++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            4557788899999 999999999999999998 3588999998763  1135667777774                   


Q ss_pred             ----CCCCcEEEEEcCCCCceeccCCCCC--HHHHHHHHHHHhcC
Q 021368          105 ----GEAPKVLAYTGNDDAKKHILDGELT--LDKIKTFGEDFLEG  143 (313)
Q Consensus       105 ----~~~~P~i~~~~~~~~~~~~~~g~~~--~~~i~~fi~~~~~~  143 (313)
                          ++  |++++++.++...+.+.|..+  .+.+.++++..+.+
T Consensus       139 ~~~~~~--P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          139 GRALGM--PTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             TCCSSS--SEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             cccCCC--CEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                55  998888766555556667654  78999999998864

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.32  E-value=1.9e-06  Score=67.01  Aligned_cols=91  Identities=14%  Similarity=0.106  Sum_probs=71.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCC-CCcee
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKH  122 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~-~~~~~  122 (313)
                      .+++++|.|+++| ..|+.+....   .+|+..++..+.++.+|.++.. +..+++.|++.++  |+++|++.. +....
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~-~~~l~~~y~v~~~--P~~~fld~~~G~~l~  117 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDF--PYVSILDPRTGQKLV  117 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSS--SEEEEECTTTCCCCE
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHh-HHHHHHHcCCCCC--CEEEEEeCCCCcEee
Confidence            4667888899999 9999997654   5567777656889999997654 6789999999988  999999875 32222


Q ss_pred             ccCCCCCHHHHHHHHHHHhc
Q 021368          123 ILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       123 ~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .+.| ++.+.+.+++.+++.
T Consensus       118 ~~~g-~~~~~fl~~L~~~l~  136 (153)
T 2dlx_A          118 EWHQ-LDVSSFLDQVTGFLG  136 (153)
T ss_dssp             EESS-CCHHHHHHHHHHHHH
T ss_pred             ecCC-CCHHHHHHHHHHHHH
Confidence            2455 899999999988875

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.30  E-value=1.1e-06  Score=71.05  Aligned_cols=88  Identities=11%  Similarity=0.103  Sum_probs=65.5

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-----------------------------c-
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------------H-  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------------------~-  225 (313)
                      .+++++|+|| ++||++|....+.+.++..++++. ++.++.|+++...                             . 
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH
Confidence            4689999999 999999999999999999999643 5788888776310                             0 


Q ss_pred             ccCCCC-----cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          226 HRAKSD-----GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       226 ~~~~v~-----~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      ..|++.     .+|+++++. +|..+.   .+.|    ..+.+.+.+.|.+..
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i~~---~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVVQH---LLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEE---EEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEEEE---EEeCCCCCCCCHHHHHHHHHHHh
Confidence            357887     899999994 555432   3334    245788888887654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.30  E-value=1.5e-06  Score=77.15  Aligned_cols=93  Identities=14%  Similarity=0.071  Sum_probs=76.3

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc------------------------ccccchhhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------------------------DVGKPVSEYF  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~------------------------~~~~~l~~~~  101 (313)
                      .++.++|.||++| ++|+...|.|.+++.+|.+ .+.|+.|+++..                        +....+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            3557788899999 9999999999999999986 499999988631                        0135788999


Q ss_pred             CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          102 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +|..+  |++++++.+......+.|..+.+.|.++|.+.+.
T Consensus       161 gV~~~--Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          161 RNRYW--PAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TCCEE--SEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHH
T ss_pred             CCCcc--CEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHh
Confidence            99988  9988887666556667888899999999998875

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.29  E-value=8.1e-07  Score=69.03  Aligned_cols=77  Identities=10%  Similarity=0.033  Sum_probs=52.5

Q ss_pred             ccCCCccEEEEEeeC-CchhhhhHHHHHHHH--hccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCcee
Q 021368           46 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAK--SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH  122 (313)
Q Consensus        46 ~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~--~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~  122 (313)
                      ...+++++|.||++| ++|+.+.|.+.+...  .+.+ ..|+.|+++.+  ...++..+++.++  |+++|++.++....
T Consensus        41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-~~fv~V~vD~e--~~~~~~~~~v~~~--PT~~f~~~~G~~v~  115 (151)
T 3ph9_A           41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-NKFIMLNLMHE--TTDKNLSPDGQYV--PRIMFVDPSLTVRA  115 (151)
T ss_dssp             HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-HTCEEEEESSC--CSCGGGCTTCCCS--SEEEEECTTSCBCT
T ss_pred             HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-cCeEEEEecCC--chhhHhhcCCCCC--CEEEEECCCCCEEE
Confidence            345678899999999 999999999886432  2211 23455555432  3467788999988  99999984443444


Q ss_pred             ccCCC
Q 021368          123 ILDGE  127 (313)
Q Consensus       123 ~~~g~  127 (313)
                      .+.|.
T Consensus       116 ~~~G~  120 (151)
T 3ph9_A          116 DIAGR  120 (151)
T ss_dssp             TCCCS
T ss_pred             EEeCC
Confidence            55665

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.28  E-value=1.6e-06  Score=71.94  Aligned_cols=87  Identities=11%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc---------------------------c---c
Q 021368          178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------H---H  226 (313)
Q Consensus       178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---------------------------~---~  226 (313)
                      +++++|+|| ++||++|....+.+.++..+|++. ++.++.|+++...                           .   .
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            589999999 999999999999999999999653 5888888776410                           0   3


Q ss_pred             cCCCC------cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          227 RAKSD------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       227 ~~~v~------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      .|++.      .+|+++++. +|..+.   .+.|    ..+.+++.+.|.+..
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~---~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKH---LSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHhh
Confidence            56777      899999994 555432   2333    356788888888764

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.28  E-value=5.4e-06  Score=68.54  Aligned_cols=92  Identities=12%  Similarity=0.130  Sum_probs=72.3

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc--------------------------ccccchhhhhCC
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------------------------DVGKPVSEYFGI  103 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~--------------------------~~~~~l~~~~~v  103 (313)
                      ++|.||+.| +.|....|.|.+++.+|.++ +.|+.|+++..                          +....+++.|||
T Consensus        62 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v  141 (218)
T 3u5r_E           62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGA  141 (218)
T ss_dssp             EEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTC
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCC
Confidence            778899999 99999999999999999875 99999998521                          114588999999


Q ss_pred             CCCCCcEEEEEcCCCCceec---------cCCCCCHHHHHHHHHHHhcCCC
Q 021368          104 TGEAPKVLAYTGNDDAKKHI---------LDGELTLDKIKTFGEDFLEGKL  145 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~~~~---------~~g~~~~~~i~~fi~~~~~~~~  145 (313)
                      ...  |++++++.++...+.         ..+..+.+.|.+.|+..+.++-
T Consensus       142 ~~~--P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~  190 (218)
T 3u5r_E          142 ACT--PDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD  190 (218)
T ss_dssp             CEE--SEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCC--CeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence            988  999888765533322         1234568999999999988654

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.27  E-value=1.4e-06  Score=71.12  Aligned_cols=88  Identities=10%  Similarity=0.073  Sum_probs=65.9

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc---------------------------c---
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------H---  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---------------------------~---  225 (313)
                      .+++++|+|| ++||++|....+.+.++..+++.. ++.++.|+++...                           .   
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  113 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  113 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHH
Confidence            3689999999 999999999999999999999763 5888888876410                           0   


Q ss_pred             ccCCCC------cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          226 HRAKSD------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       226 ~~~~v~------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      ..|++.      .+|+++++. +|..+.   .+.|    ..+.++|.+.|.+..
T Consensus       114 ~~ygv~~~~~g~~~P~~~lid~~G~i~~---~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          114 KSYGVLKEEDGVAYRGLFIIDPKQNLRQ---ITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCccCCCCceeeEEEEECCCCEEEE---EEeCCCCCCCCHHHHHHHHHHhh
Confidence            346777      899999995 454432   3333    346788888887664

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.26  E-value=2e-06  Score=65.92  Aligned_cols=66  Identities=11%  Similarity=0.031  Sum_probs=55.6

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcc---------------------cccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED---------------------VGKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~---------------------~~~~l~~~~~v  103 (313)
                      .++.++|.||++| ++|+...|.|.+++.++.  +.+.|+.|+++...                     ....+++.|||
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            4557788899999 999999999999999998  36999999988621                     13578899999


Q ss_pred             CCCCCcEEEEEc
Q 021368          104 TGEAPKVLAYTG  115 (313)
Q Consensus       104 ~~~~~P~i~~~~  115 (313)
                      .++  |++++++
T Consensus       107 ~~~--P~~~lid  116 (144)
T 1i5g_A          107 KSI--PTLVGVE  116 (144)
T ss_dssp             CSS--SEEEEEE
T ss_pred             CCC--CEEEEEE
Confidence            988  9999997

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.23  E-value=2.9e-06  Score=65.25  Aligned_cols=66  Identities=15%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcc---------------------cccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED---------------------VGKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~---------------------~~~~l~~~~~v  103 (313)
                      .++.++|.||++| ++|+...|.|.+++.++.  +.+.|+.|+++...                     .+..+++.|||
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            4557788899999 999999999999999998  36899999987631                     13578899999


Q ss_pred             CCCCCcEEEEEc
Q 021368          104 TGEAPKVLAYTG  115 (313)
Q Consensus       104 ~~~~~P~i~~~~  115 (313)
                      .++  |++++++
T Consensus       107 ~~~--Pt~~lid  116 (146)
T 1o8x_A          107 ESI--PTLIGVD  116 (146)
T ss_dssp             CSS--SEEEEEE
T ss_pred             CCC--CEEEEEE
Confidence            988  9999997

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.20  E-value=2.3e-06  Score=70.53  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=64.6

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------------c
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------------H  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------------~  225 (313)
                      .+++++|+|| ++||++|....+.+.++..+|++. ++.++.|+++...                              .
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER-NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH
Confidence            4689999999 999999999999999999999643 5777777765410                              0


Q ss_pred             ccCCCC-----cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          226 HRAKSD-----GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       226 ~~~~v~-----~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      ..|++.     .+|+++++. +|..+.   .+.|    ..+.+.|.+.|....
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i~~---~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIVQH---LLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHHH
Confidence            356777     799998885 454432   3333    245788888887654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.20  E-value=1.4e-06  Score=72.09  Aligned_cols=79  Identities=15%  Similarity=0.257  Sum_probs=57.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-----------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----------------------------------  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------------------  221 (313)
                      +.+.+++.||++||++|+.+.+.+.++...     ++.+..+...                                   
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            467899999999999999999999988652     2444433221                                   


Q ss_pred             -----Cccc------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          222 -----TNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       222 -----~~~~------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                           ....      ..+++.++|+++ +.+|.      .+.|..+.+.|.++|.+.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~v-~~dG~------~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAVV-LSNGT------LVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSC------EEESCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEEE-EcCCe------EecCCCCHHHHHHHHHHh
Confidence                 1000      467999999984 45552      567888889999998765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.18  E-value=5.3e-06  Score=63.41  Aligned_cols=85  Identities=11%  Similarity=0.078  Sum_probs=63.8

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHH---HHHhccC-eEEEEEEeCCCcccc---------------------cchhhhhC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKG-KLIFVYVQMDNEDVG---------------------KPVSEYFG  102 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~---~a~~~~~-~v~f~~vd~~~~~~~---------------------~~l~~~~~  102 (313)
                      +...+|.||++| ++|....|.+.+   +..++++ .+.|+.|+.+.....                     ..+.+.|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            457788899999 999999999999   9999964 589999998764100                     01477899


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      |.++  |++++++.++...+.   ..+.+.|.+|++
T Consensus       111 v~~~--P~~~lid~~G~i~~~---~~~~~~l~~~l~  141 (142)
T 3eur_A          111 LRAI--PTLYLLDKNKTVLLK---DATLQKVEQYLA  141 (142)
T ss_dssp             CTTC--SEEEEECTTCBEEEE---EECHHHHHHHHH
T ss_pred             CCcC--CeEEEECCCCcEEec---CCCHHHHHHHHh
Confidence            9988  999888766533222   246788888875

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.18  E-value=1.7e-06  Score=70.54  Aligned_cols=45  Identities=9%  Similarity=-0.042  Sum_probs=36.9

Q ss_pred             CCCcEEEEEeCCCCcc-chhhhHHHHHHHHHhcC--CCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRG--VDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~~~--~~~v~~~~vd~~  221 (313)
                      .+++++|+||++||++ |...++.+.++...+..  ..++.++.|+++
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D   87 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD   87 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECC
Confidence            4789999999999998 99999999998887753  125777777766

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.18  E-value=1.4e-05  Score=62.90  Aligned_cols=92  Identities=9%  Similarity=0.034  Sum_probs=71.8

Q ss_pred             CCccEEEEEeeC-Cc-hhhhhHHHHHHHHhcc-----CeEEEEEEeCCCccc-------------------------ccc
Q 021368           49 PIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFK-----GKLIFVYVQMDNEDV-------------------------GKP   96 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~-c~~~~~~~~~~a~~~~-----~~v~f~~vd~~~~~~-------------------------~~~   96 (313)
                      ++..+|.||+.| ++ |....|.|.++..++.     ..+.|+.|+++...+                         ...
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            456778899999 87 9999999999999995     359999998874210                         125


Q ss_pred             hhhhhCCCCCCCc---------------EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           97 VSEYFGITGEAPK---------------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        97 l~~~~~v~~~~~P---------------~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +++.|||...  |               ++++++.++.....+.|..+.+.|.+.+.+.+.
T Consensus       106 ~~~~~~v~~~--p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          106 ASHSYRVYYN--AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHSCCCCE--ECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHhCeEEE--ecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            7888999876  5               777776655555667888999999999998875

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.17  E-value=7.5e-06  Score=64.02  Aligned_cols=93  Identities=10%  Similarity=0.055  Sum_probs=72.4

Q ss_pred             CCCccEEEEEeeC-Cc-hhhhhHHHHHHHHhccC-----eEEEEEEeCCCccc-------------------------cc
Q 021368           48 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG-----KLIFVYVQMDNEDV-------------------------GK   95 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~-c~~~~~~~~~~a~~~~~-----~v~f~~vd~~~~~~-------------------------~~   95 (313)
                      .++..+|.||+.| ++ |....|.+.++..++.+     .+.|+.|+++...+                         ..
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3457788899999 87 99999999999999863     68888988875211                         12


Q ss_pred             chhhhhCCCCCCCc---------------EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           96 PVSEYFGITGEAPK---------------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        96 ~l~~~~~v~~~~~P---------------~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .+++.|||...  |               ++++++.++.....+.|..+.+.|.+.+.+.+.
T Consensus       102 ~~~~~~~v~~~--p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYS--PGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEE--EEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEE--ecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            47788999877  6               666776655555667888899999999998864

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.16  E-value=5.6e-06  Score=65.23  Aligned_cols=68  Identities=12%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCccc---------------------ccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDV---------------------GKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~---------------------~~~l~~~~~v  103 (313)
                      .++..+|.||++| ++|+...|.|.+++.++.+  .+.|+.|+++....                     ...+++.|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            3557788899999 9999999999999999985  68888888876420                     1588999999


Q ss_pred             CCCCCcEEEEEcCC
Q 021368          104 TGEAPKVLAYTGND  117 (313)
Q Consensus       104 ~~~~~P~i~~~~~~  117 (313)
                      .++  |++++++.+
T Consensus       127 ~~~--Pt~~lid~~  138 (165)
T 3s9f_A          127 ESI--PTLIGLNAD  138 (165)
T ss_dssp             CSS--SEEEEEETT
T ss_pred             CCC--CEEEEEeCC
Confidence            988  999999864

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.16  E-value=5.1e-06  Score=68.90  Aligned_cols=87  Identities=11%  Similarity=0.091  Sum_probs=64.4

Q ss_pred             CCCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368          177 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------  225 (313)
                      .+++++|+||+ +||++|....+.+.++..+|++. ++.++.|+++....                              
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR-NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH
Confidence            46899999996 99999999999999999999864 58888888774210                              


Q ss_pred             ccCCCC------cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhc
Q 021368          226 HRAKSD------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKN  267 (313)
Q Consensus       226 ~~~~v~------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~  267 (313)
                      ..|++.      .+|+++++. +|..+.   .+.|    ....+.+++.|...
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I~~---~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGILRQ---ITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEEEE---EEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence            346776      789999995 455432   3333    23577888888754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.16  E-value=3.7e-06  Score=78.87  Aligned_cols=122  Identities=9%  Similarity=-0.002  Sum_probs=89.4

Q ss_pred             CcccccCCCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccC-CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEE
Q 021368            7 EKISYFADGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLI   82 (313)
Q Consensus         7 ~~~~~y~~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~-~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~   82 (313)
                      ...+.| +|==.=+++.+|+..-  ....-..++++.++.+... ....++.|+++| ++|+.+.|.+.+++..+. .+.
T Consensus        73 ~~~i~f-~g~p~g~e~~s~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~  150 (521)
T 1hyu_A           73 QQGPRF-AGSPLGHEFTSLVLALLWTGGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIK  150 (521)
T ss_dssp             CCSCEE-ESCCCGGGHHHHHHHHHHHTTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEE
T ss_pred             cceEEE-eccCcchhHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceE
Confidence            345778 6665556666666532  1222346677777666433 224466788999 999999999999999987 599


Q ss_pred             EEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368           83 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus        83 f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      |..+|.+.   +++++.+|||.+.  |++++  +++  . ...|..+.+.|.+++...
T Consensus       151 ~~~vd~~~---~~~~~~~~~i~sv--Pt~~i--~g~--~-~~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          151 HTAIDGGT---FQNEITERNVMGV--PAVFV--NGK--E-FGQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EEEEETTT---CHHHHHHTTCCSS--SEEEE--TTE--E-EEESCCCHHHHHHHHCCS
T ss_pred             EEEEechh---hHHHHHHhCCCcc--CEEEE--CCE--E-EecCCCCHHHHHHHHhhc
Confidence            99999988   6799999999998  99966  332  2 234889999999998664

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.14  E-value=4.2e-06  Score=63.98  Aligned_cols=66  Identities=15%  Similarity=0.158  Sum_probs=55.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhcc--CeEEEEEEeCCCcc---------------------cccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED---------------------VGKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~--~~v~f~~vd~~~~~---------------------~~~~l~~~~~v  103 (313)
                      .++..+|.||++| ++|+...|.|.+++.++.  +.+.|+.|+++...                     .+..+++.|||
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            3457788899999 999999999999999998  46888999887631                     13578899999


Q ss_pred             CCCCCcEEEEEc
Q 021368          104 TGEAPKVLAYTG  115 (313)
Q Consensus       104 ~~~~~P~i~~~~  115 (313)
                      .++  |++++++
T Consensus       107 ~~~--Pt~~lid  116 (144)
T 1o73_A          107 ESI--PTLITIN  116 (144)
T ss_dssp             CSS--SEEEEEE
T ss_pred             CCC--CEEEEEE
Confidence            988  9999998

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.14  E-value=3.7e-06  Score=66.84  Aligned_cols=81  Identities=11%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc---------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---------------------------------  223 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------------------------------  223 (313)
                      +.+.+++.|+++||++|..+.+.+.++...+..   +.+...+....                                 
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~   97 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN---VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGK   97 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC---EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Confidence            357899999999999999999999999887543   55555443211                                 


Q ss_pred             --------------------------------------ccccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHH
Q 021368          224 --------------------------------------EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK  265 (313)
Q Consensus       224 --------------------------------------~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~  265 (313)
                                                            ....++|.++|++++  +|.      .+.|..+.+.|.+.|.
T Consensus        98 ~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~------~~~G~~~~~~l~~~i~  169 (175)
T 3gyk_A           98 ANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA------LVPGFVEQSQLQDAVD  169 (175)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE------EECSCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE------EeeCCCCHHHHHHHHH
Confidence                                                  003568999999988  442      6778889999999987


Q ss_pred             hcC
Q 021368          266 KNA  268 (313)
Q Consensus       266 ~~~  268 (313)
                      +.+
T Consensus       170 ~~l  172 (175)
T 3gyk_A          170 RAR  172 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.14  E-value=7e-06  Score=64.61  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=60.6

Q ss_pred             CCCcEEEEEeCCC-CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----------------------c---ccCCC
Q 021368          177 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------------------H---HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----------------------~---~~~~v  230 (313)
                      .+++++|+||++| |++|....+.+.++..++ .  ++.++.++.+...                      .   ..|++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G--DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S--SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C--CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCC
Confidence            4689999999999 999999999999999999 3  5777777776411                      0   23555


Q ss_pred             Cc------CceEEEEe-CCCCCcCceeecc-----CcCHHHHHHHHHhc
Q 021368          231 DG------FPTILFFP-AGNKSFDPINVDV-----DRTVVALYKFLKKN  267 (313)
Q Consensus       231 ~~------~P~i~~~~-~g~~~~~~~~y~g-----~~~~~~l~~fi~~~  267 (313)
                      ..      .|+++++. +|..+.   .+.|     ..+.+.+++.|++.
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i~~---~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKVVY---AEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCEEE---EEECSBTTSCCCSHHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcEEE---EEecCCcCCCCCHHHHHHHHHHh
Confidence            54      49888885 555442   3433     23457788888765

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.12  E-value=1.2e-05  Score=63.65  Aligned_cols=92  Identities=9%  Similarity=0.034  Sum_probs=66.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCC--------cccccchh-------------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVS-------------------   98 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~--------~~~~~~l~-------------------   98 (313)
                      .++.++|.||+.| +.|. ..|.|.+++.++.+. +.|+.|+++.        ......++                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            4557788899999 9999 999999999999875 8888887741        00012222                   


Q ss_pred             -----------hhhCCCCCCCc------EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           99 -----------EYFGITGEAPK------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        99 -----------~~~~v~~~~~P------~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                                 +.+|+.+.  |      +.++++.++.....+.|..+.+.|.+.|.+.+.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~--P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGL--RGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSC--CSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCCC--CcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                       13577777  7      666776655556667888899999999998875

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.10  E-value=1.3e-06  Score=59.95  Aligned_cols=70  Identities=6%  Similarity=0.036  Sum_probs=50.0

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT  256 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~  256 (313)
                      +++|+++||++|+.+.+.+.+.        ++.+..+|++.+..     ..+++.++|+++  .+|.      .. +..+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~------~~-~g~~   65 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDL------SW-SGFR   65 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTE------EE-ESCC
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCE------EE-ecCC
Confidence            6789999999999999988764        35667788887643     247899999984  3443      22 3356


Q ss_pred             HHHHHHHHHhcC
Q 021368          257 VVALYKFLKKNA  268 (313)
Q Consensus       257 ~~~l~~fi~~~~  268 (313)
                      .+.|.++|.+++
T Consensus        66 ~~~l~~~l~~~~   77 (81)
T 1h75_A           66 PDMINRLHPAPH   77 (81)
T ss_dssp             HHHHGGGSCCC-
T ss_pred             HHHHHHHHhccc
Confidence            777877776554

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.10  E-value=3.5e-06  Score=69.38  Aligned_cols=79  Identities=15%  Similarity=0.197  Sum_probs=57.4

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC----------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------------  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------------  222 (313)
                      +.+.+++.|+++||++|+.+.+.+.++...     ++.+..+....                                  
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~-----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~  159 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK  159 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence            467899999999999999999999887642     24443332210                                  


Q ss_pred             -----cc-------cccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          223 -----NE-------HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       223 -----~~-------~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                           ..       ...++++++|++++ .+|.      .+.|..+.+.|.++|.+.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~------~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          160 EVKTPNIVKKHYELGIQFGVRGTPSIVT-STGE------LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC------CCCSCCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE------EecCCCCHHHHHHHHHhc
Confidence                 00       04679999999988 5664      466878899999999764

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.09  E-value=5.8e-06  Score=64.79  Aligned_cols=88  Identities=10%  Similarity=0.030  Sum_probs=62.3

Q ss_pred             CCCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCCc
Q 021368          177 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSDG  232 (313)
Q Consensus       177 ~~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v~~  232 (313)
                      .+++++|+||+ +||++|...++.+.++..++++. ++.+..|.++....                       ..|++..
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  112 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIK  112 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcc
Confidence            36799999998 99999999999999999999754 47777777663111                       2345555


Q ss_pred             ------------CceEEEEe-CCCCCcCceeecc---CcCHHHHHHHHHhcC
Q 021368          233 ------------FPTILFFP-AGNKSFDPINVDV---DRTVVALYKFLKKNA  268 (313)
Q Consensus       233 ------------~P~i~~~~-~g~~~~~~~~y~g---~~~~~~l~~fi~~~~  268 (313)
                                  .|+++++. +|..+.   .+.+   ....+.+++.|++..
T Consensus       113 ~~~~~~~~~~~~~p~~~lid~~G~i~~---~~~~~~~~~~~~~il~~l~~l~  161 (163)
T 3gkn_A          113 EKNMYGKQVLGIERSTFLLSPEGQVVQ---AWRKVKVAGHADAVLAALKAHA  161 (163)
T ss_dssp             EEEETTEEEEEECCEEEEECTTSCEEE---EECSCCSTTHHHHHHHHHHHHC
T ss_pred             ccccccccccCcceEEEEECCCCeEEE---EEcCCCcccCHHHHHHHHHHHh
Confidence                        89999995 455432   3333   234577888887653

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.04  E-value=1.8e-05  Score=63.73  Aligned_cols=93  Identities=11%  Similarity=-0.005  Sum_probs=69.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc--------ccccchh-hh----------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPVS-EY----------------  100 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~--------~~~~~l~-~~----------------  100 (313)
                      .++.++|.||+.| +.|....|.|.++..+|.++ +.|+.|+++..        ....+++ ++                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4557788899999 99999999999999999875 99999988720        0012223 22                


Q ss_pred             -------------hCCCCCCCc------EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          101 -------------FGITGEAPK------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       101 -------------~~v~~~~~P------~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                                   +++.+.  |      +.++++.++.....+.|..+.+.|.+.|.+.+.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~--P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKT--KAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGC--CSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCC--ccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                         366656  6      666776655556667888999999999999876

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.03  E-value=1.8e-05  Score=62.13  Aligned_cols=93  Identities=11%  Similarity=0.025  Sum_probs=68.3

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCC--------cccccchhh-hh---------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSE-YF---------------  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~--------~~~~~~l~~-~~---------------  101 (313)
                      .++.++|.||+.| +.|....|.+.+++.++.++ +.|+.|+++.        ......+++ ++               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4557788899999 99999999999999999875 9999998863        000122333 32               


Q ss_pred             --------------CC--CCCCCc---EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          102 --------------GI--TGEAPK---VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       102 --------------~v--~~~~~P---~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                                    |+  .+.  |   +.++++.++...+.+.|..+.+.|.+.|.+.+.
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~--p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDI--QWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCC--CSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             chHHHHHHHHhcCCCccCCcc--cccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                          34  344  6   666776655556667888899999999998865

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=1.7e-06  Score=65.56  Aligned_cols=85  Identities=11%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc---c-----c-ccCCCCcCceEEE
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---E-----H-HRAKSDGFPTILF  238 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---~-----~-~~~~v~~~P~i~~  238 (313)
                      +.+.+.+.. . . +++|+++||++|+.+.+.+.++.        +.+..+|++..   .     . ..+++.++|++++
T Consensus        18 ~~~~~~i~~-~-~-vvvf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i   86 (130)
T 2cq9_A           18 NQIQETISD-N-C-VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV   86 (130)
T ss_dssp             HHHHHHHHH-S-S-EEEEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE
T ss_pred             HHHHHHHcC-C-c-EEEEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE
Confidence            344554432 2 3 44599999999999999998863        33445666654   2     1 3568899999853


Q ss_pred             EeCCCCCcCceeec---cCcCHHHHHHHHHhcC
Q 021368          239 FPAGNKSFDPINVD---VDRTVVALYKFLKKNA  268 (313)
Q Consensus       239 ~~~g~~~~~~~~y~---g~~~~~~l~~fi~~~~  268 (313)
                        +|..+.   .+.   +......|.++|....
T Consensus        87 --~G~~ig---g~~~l~~~~~~~~L~~~L~~~g  114 (130)
T 2cq9_A           87 --NGTFIG---GATDTHRLHKEGKLLPLVHQCY  114 (130)
T ss_dssp             --TTEEEE---EHHHHHHHHHHTSSHHHHHHHS
T ss_pred             --CCEEEc---ChHHHHHHHHcCcHHHHHHHcC
Confidence              655432   221   2223456778887763

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.02  E-value=2.8e-05  Score=61.76  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=58.4

Q ss_pred             CCCcEEEEEeCCC-CccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc----------------------cc--ccCCCC
Q 021368          177 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------------EH--HRAKSD  231 (313)
Q Consensus       177 ~~k~~lv~fy~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------------------~~--~~~~v~  231 (313)
                      .+++++|+||++| |++|....+.+.++..+  .  ++.++.|+.+..                      ..  ..|++.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  118 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--S--GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVT  118 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--T--TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--c--CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCc
Confidence            4689999999999 99999999999999988  2  577777776521                      00  356666


Q ss_pred             cC---------ceEEEEe-CCCCCcCceeecc-----CcCHHHHHHHHHhcCC
Q 021368          232 GF---------PTILFFP-AGNKSFDPINVDV-----DRTVVALYKFLKKNAS  269 (313)
Q Consensus       232 ~~---------P~i~~~~-~g~~~~~~~~y~g-----~~~~~~l~~fi~~~~~  269 (313)
                      ..         |+.+++. +|..+.   .+.|     ..+.+.+++.+.+..+
T Consensus       119 ~~~~~~~g~~~p~~~lid~~G~I~~---~~~g~~~~~~~~~~~~l~~l~~~~~  168 (175)
T 1xvq_A          119 IADGPMAGLLARAIVVIGADGNVAY---TELVPEIAQEPNYEAALAALGATSG  168 (175)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEE---EEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred             ccccccCCcccceEEEECCCCeEEE---EEECCCcCCCCCHHHHHHHHHhhcC
Confidence            65         8888885 555432   3332     2356666666665543

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.98  E-value=5.6e-05  Score=59.23  Aligned_cols=96  Identities=13%  Similarity=0.006  Sum_probs=67.3

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc--------ccccchh-hhh---------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPVS-EYF---------------  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~--------~~~~~l~-~~~---------------  101 (313)
                      .++.++|.||+.| ++|....|.+.++..++.+. +.|+.|+++..        .....++ +.+               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4557788899999 99999999999999999874 99999988631        0012221 222               


Q ss_pred             --------------CCCCC---CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          102 --------------GITGE---APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       102 --------------~v~~~---~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                                    |+.+.   ..|+.++++.++.....+.|..+.+.|.+.|.+.+..
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  168 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK  168 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence                          32211   1166667766555556678888899999999988763

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.98  E-value=2.4e-05  Score=64.79  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------  225 (313)
                      .+++++|+|| ++||++|...++.+.++..+|++. ++.++.|.++....                              
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK-NVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH
Confidence            4689999999 999999999999999999998643 57777777654211                              


Q ss_pred             ccCCC-----CcCceEEEEeC-CCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          226 HRAKS-----DGFPTILFFPA-GNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       226 ~~~~v-----~~~P~i~~~~~-g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      ..|++     ...|+++++.. |..+.   .+.|    ..+.+.|++.|.+..
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~~---~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVRH---QTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEE---EEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHHh
Confidence            12355     25799999954 44432   2333    356788888887764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.98  E-value=1.4e-05  Score=53.76  Aligned_cols=67  Identities=10%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---cCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAGNKSFDPINVDVDRT  256 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~  256 (313)
                      +++|+++||++|+.+.+.+.++        ++.+..+|++.+..  .   .+++.++|+++.  +|.      .+.| .+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~------~~~g-~~   65 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE------HWSG-FR   65 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE------EEES-CC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCe------EEcC-CC
Confidence            6789999999999999988765        35666778877643  3   688999999874  443      2333 57


Q ss_pred             HHHHHHHHH
Q 021368          257 VVALYKFLK  265 (313)
Q Consensus       257 ~~~l~~fi~  265 (313)
                      .+.|.++|.
T Consensus        66 ~~~l~~~l~   74 (75)
T 1r7h_A           66 PERIKQLQA   74 (75)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            788888773

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=97.97  E-value=1.8e-05  Score=60.44  Aligned_cols=87  Identities=10%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCccc-----------------------ccchhhhhC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV-----------------------GKPVSEYFG  102 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~-----------------------~~~l~~~~~  102 (313)
                      .++..+|.||+.| ++|....|.+.++..+|.+ .+.|+.|+++....                       ...+++.||
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            3457788899999 8899999999999999985 48888888874210                       135778899


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      |.+.  |+.++++.++.....   ....+++.+++.+
T Consensus       111 v~~~--P~~~lid~~G~i~~~---~~~~~~l~~~l~~  142 (143)
T 4fo5_A          111 LRKG--FKNFLINDEGVIIAA---NVTPEKLTEILKA  142 (143)
T ss_dssp             GGGC--CCEEEECTTSBEEEE---SCCHHHHHHHHTC
T ss_pred             CCCC--CcEEEECCCCEEEEc---cCCHHHHHHHHHh
Confidence            9988  888788755433222   2467777777654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.94  E-value=3.2e-05  Score=62.12  Aligned_cols=94  Identities=9%  Similarity=-0.021  Sum_probs=66.7

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCC--------cccccchhh-h----------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSE-Y----------------  100 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~--------~~~~~~l~~-~----------------  100 (313)
                      .++.++|.||+.| ++|....|.|.++..+|+++ +.|+.|.++.        ......+++ .                
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            4557788899999 99999999999999999875 8888888762        000111111 1                


Q ss_pred             ----------------hCCCCCCCc---EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368          101 ----------------FGITGEAPK---VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       101 ----------------~~v~~~~~P---~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                                      +|+...  |   +.++++.++.....+.|..+.+.|.+.|.+.+.+
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~i--P~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAI--KWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSC--CSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             chhHHHHHHHhhcCCccCCCcc--ccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                            133333  5   7777766655566678889999999999998764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.94  E-value=3.6e-05  Score=60.16  Aligned_cols=90  Identities=13%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             CCc-cEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc------------------cccchhhhhCCCC-
Q 021368           49 PIK-NQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGITG-  105 (313)
Q Consensus        49 ~~~-~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~------------------~~~~l~~~~~v~~-  105 (313)
                      ++. .+|.|| +.| +.|....|.|.+++.+|.+. +.|+.|+++...                  ....+++.||+.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            334 777899 999 99999999999999999864 888888886210                  1458889999998 


Q ss_pred             ---CCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHH
Q 021368          106 ---EAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDF  140 (313)
Q Consensus       106 ---~~~P~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~  140 (313)
                         .  |++++++.++...+.+.|.    ...+.+.+.+.+.
T Consensus       108 ~~~~--P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          108 ILPA--RITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             SSCC--CEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             Cccc--ceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHh
Confidence               6  9888887665555555562    2344555555443

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.94  E-value=1.2e-05  Score=63.39  Aligned_cols=90  Identities=11%  Similarity=0.128  Sum_probs=67.8

Q ss_pred             CCCccEEEEEeeC-Cc-hhhhhHHHHHHHHhccC----eEEEEEEeCCCcccc-------------------------cc
Q 021368           48 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG----KLIFVYVQMDNEDVG-------------------------KP   96 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~-c~~~~~~~~~~a~~~~~----~v~f~~vd~~~~~~~-------------------------~~   96 (313)
                      .++.++|.||+.| ++ |....|.+.++..++.+    .+.|+.|+++...+.                         ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3457788899999 87 99999999999999984    599999998753111                         25


Q ss_pred             hhhhhCC---------------CCCCCcEEEEEcCCCCceeccCCCC--CHHHHHHHHHHH
Q 021368           97 VSEYFGI---------------TGEAPKVLAYTGNDDAKKHILDGEL--TLDKIKTFGEDF  140 (313)
Q Consensus        97 l~~~~~v---------------~~~~~P~i~~~~~~~~~~~~~~g~~--~~~~i~~fi~~~  140 (313)
                      +++.||+               ...  |++++++ ++.....+.|..  +.+.|.+.|.+.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~--P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHT--ATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEEC--CCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecC--CEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            6666665               344  8888888 554555667766  888998888764

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.91  E-value=5.4e-06  Score=56.81  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=46.3

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~  113 (313)
                      .+++|+++| ++|+.+.+.+.+++.++...+.+..||.+. . ..++++++|+++.  |++++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~-~-~~~~~~~~gv~~v--Pt~~i   61 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDK-A-RIAEAEKAGVKSV--PALVI   61 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCS-S-THHHHHHHTCCEE--EEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCCh-h-hHHHHHHcCCCcC--CEEEE
Confidence            367899999 999999999999988876566666666531 1 5688899999988  99866

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=97.91  E-value=1.6e-05  Score=59.42  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             EEeC-CCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           35 TIFT-RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        35 ~~lt-~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      ..|+ .+.++.++......+|-||.+| ++|   .+.|.++|..+ +.+.|+.++.      ..+++.+++. .  |++.
T Consensus        24 ~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~~------~~v~~~~~v~-~--~~vv   90 (124)
T 2l4c_A           24 TWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGISTD------SEVLTHYNIT-G--NTIC   90 (124)
T ss_dssp             EECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEECC------HHHHHHTTCC-S--SCEE
T ss_pred             eEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEECh------HHHHHHcCCC-C--CeEE
Confidence            3353 3556666766666677799987 666   78999999999 6699998864      3789999997 4  8888


Q ss_pred             EEcCCCCceeccCC----CCCHHHHHHHHHHH
Q 021368          113 YTGNDDAKKHILDG----ELTLDKIKTFGEDF  140 (313)
Q Consensus       113 ~~~~~~~~~~~~~g----~~~~~~i~~fi~~~  140 (313)
                      +|+........|.|    ..+.+.|.+||...
T Consensus        91 lfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           91 LFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            88876555566775    78999999999864

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.89  E-value=3.6e-05  Score=62.24  Aligned_cols=93  Identities=11%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc----------------------ccccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE----------------------DVGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~----------------------~~~~~l~~~~~v  103 (313)
                      ++..+|.|| +.| +.|....|.|.+++.+|.+ .+.|+.|+.+..                      +....+++.||+
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            456778899 999 9999999999999999986 488999988641                      013468889999


Q ss_pred             C-----CCCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHHhcC
Q 021368          104 T-----GEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEG  143 (313)
Q Consensus       104 ~-----~~~~P~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~~~  143 (313)
                      .     ..  |++++++.++...+.+.|.    .+.+.|.+.+.++..+
T Consensus       125 ~~~~g~~~--P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~  171 (195)
T 2bmx_A          125 LNADGVAD--RVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSD  171 (195)
T ss_dssp             BCTTSSBC--EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC-
T ss_pred             cccCCCcc--ceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhC
Confidence            8     77  9988887665444444443    3789999999998764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=1.6e-06  Score=67.63  Aligned_cols=92  Identities=10%  Similarity=0.023  Sum_probs=62.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHH-HHHhcc--CeEEEEEEeCCCcc-cccchh------------------hhhC--
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEE-AAKSFK--GKLIFVYVQMDNED-VGKPVS------------------EYFG--  102 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~-~a~~~~--~~v~f~~vd~~~~~-~~~~l~------------------~~~~--  102 (313)
                      .++.++|.||++| ++|+...|.|.+ +..++.  ..+.|+.|++++.. ....++                  +.||  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            3457788899999 999999999998 888887  35889999887632 022222                  2333  


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +.++  |++++++.++...+.+.| .+.+.+.+++.++..
T Consensus       112 ~~~~--P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~  148 (159)
T 2ls5_A          112 DAGI--TRNVLIDREGKIVKLTRL-YNEEEFASLVQQINE  148 (159)
Confidence            3445  888888655433444445 566677777777654

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.88  E-value=3.6e-05  Score=59.99  Aligned_cols=41  Identities=7%  Similarity=0.114  Sum_probs=33.6

Q ss_pred             CcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          179 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       179 k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      ++++|+|| +.||++|...++.+.++..++++..  .+..|.++
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d   77 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSAD   77 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESC
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCC
Confidence            47888887 8999999999999999999998653  55556554

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.88  E-value=1.5e-06  Score=64.20  Aligned_cols=80  Identities=14%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-------c--ccCCCCcCceEEEEeCCCCCcCce
Q 021368          179 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------H--HRAKSDGFPTILFFPAGNKSFDPI  249 (313)
Q Consensus       179 k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------~--~~~~v~~~P~i~~~~~g~~~~~~~  249 (313)
                      ...++.|+++||++|+.+.+.+.+++...   +.  +..+|++.+.       .  ..+++.++|++++  +|..+.   
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~---~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ig---   87 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNKFSFKR---GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSIG---   87 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTTSCBCT---TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEEE---
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHHcCCCc---Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEe---
Confidence            34678899999999999998887653221   11  6667777663       1  4678999998754  555432   


Q ss_pred             eecc---CcCHHHHHHHHHhcC
Q 021368          250 NVDV---DRTVVALYKFLKKNA  268 (313)
Q Consensus       250 ~y~g---~~~~~~l~~fi~~~~  268 (313)
                      .+.+   ......|.++|.+..
T Consensus        88 g~~~~~~~~~~~~L~~~L~~~g  109 (114)
T 2hze_A           88 GYSDLLEIDNMDALGDILSSIG  109 (114)
T ss_dssp             SHHHHHHHHHTTCHHHHHHHTT
T ss_pred             CcHHHHHHHHCChHHHHHHHcC
Confidence            2221   112345777776653

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.86  E-value=2.3e-05  Score=65.76  Aligned_cols=85  Identities=11%  Similarity=0.159  Sum_probs=60.0

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC----------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------------  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------------  222 (313)
                      +.+.+++.|+++||++|+.+.+.+..+...  +  ++.+..+....                                  
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g--~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l  171 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  171 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--C--cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Confidence            356789999999999999999998887653  2  46666554421                                  


Q ss_pred             ---------c--c-------cccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          223 ---------N--E-------HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       223 ---------~--~-------~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                               .  .       ...+++.++|++++...+...   ..+.|..+.+.|.++|.+.+
T Consensus       172 ~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~---~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          172 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL---QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE---EEEESSCCHHHHHHHTTC--
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE---EEecCCCCHHHHHHHHHHHH
Confidence                     0  0       035689999999998632221   16778889999999987664

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.85  E-value=3.8e-06  Score=60.80  Aligned_cols=77  Identities=12%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c-ccCCCCcCceEEEEeCCCCCcCceee
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRAKSDGFPTILFFPAGNKSFDPINV  251 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~-~~~~v~~~P~i~~~~~g~~~~~~~~y  251 (313)
                      .+++|+++||++|+.+.+.+.+++..+.   .  +..+|++.+.        . ..+++.++|+++  .+|..+.   .+
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~--~~g~~i~---g~   82 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEG---L--LEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGKECIG---GC   82 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTT---S--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETTEEEE---SH
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCC---c--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE--ECCEEEe---cc
Confidence            4777999999999999999987654321   2  4445665542        1 457889999974  3665432   22


Q ss_pred             cc---CcCHHHHHHHHHhc
Q 021368          252 DV---DRTVVALYKFLKKN  267 (313)
Q Consensus       252 ~g---~~~~~~l~~fi~~~  267 (313)
                      ..   ......|.++|...
T Consensus        83 ~~~~~~~~~g~L~~~l~~~  101 (105)
T 1kte_A           83 TDLESMHKRGELLTRLQQV  101 (105)
T ss_dssp             HHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHCCcHHHHHHHc
Confidence            21   12245677777654

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.83  E-value=4.1e-05  Score=61.15  Aligned_cols=92  Identities=3%  Similarity=0.011  Sum_probs=65.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc--------ccccchhhh-hC--------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPVSEY-FG--------------  102 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~--------~~~~~l~~~-~~--------------  102 (313)
                      .++.++|.||+.| +.|....|.|.+++.+|.++ +.|+.|+++..        .....++++ ++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4557788899999 99999999999999999875 99999988631        102233443 33              


Q ss_pred             ---------CCCCCCc-------EEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          103 ---------ITGEAPK-------VLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       103 ---------v~~~~~P-------~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                               +...  |       +.++++.++.....+.|..+.+.|.+.|.+.+
T Consensus       128 ~~~~~~~~~~~~~--P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          128 GAHPAFKYLAQTS--GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TSCHHHHHHHHHH--SCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhcC--CCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                     2233  5       55566555545556778888899988887754

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.80  E-value=1.6e-05  Score=64.20  Aligned_cols=42  Identities=26%  Similarity=0.484  Sum_probs=36.3

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  220 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~  220 (313)
                      +.+++++.|+++||++|..+.+.+.++...+..  .+.+..+.+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEeh
Confidence            467899999999999999999999999988876  577776665

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.80  E-value=0.00017  Score=55.51  Aligned_cols=110  Identities=11%  Similarity=0.093  Sum_probs=78.0

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEE-EeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC--Cccc--ccCCCCc--
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLE-IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT--TNEH--HRAKSDG--  232 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~-fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~--~~~~v~~--  232 (313)
                      +.|..++.++..++. ..+-+..++ |....-..-..+.+.+.++|..+++  .+.|+.+|.+  .+..  ..|+++.  
T Consensus        14 PLV~e~t~en~~~~~-~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg--ki~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIF-GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             -CEEECCTTTHHHHH-SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT--TCEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             CeeEEeccccHHHHh-cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC--ceEEEEEecchHhHHHHHHHcCCCccc
Confidence            578999999988875 455555444 4433333345678899999999987  7999999983  3322  5788875  


Q ss_pred             CceEEEEeC-CCCCcCceeec-cCcCHHHHHHHHHhcCCCCccc
Q 021368          233 FPTILFFPA-GNKSFDPINVD-VDRTVVALYKFLKKNASIPFKI  274 (313)
Q Consensus       233 ~P~i~~~~~-g~~~~~~~~y~-g~~~~~~l~~fi~~~~~~~~~~  274 (313)
                      +|++.++.. +... + ..+. +..+.+.|.+|+.+.+.-+++.
T Consensus        91 ~P~v~i~~~~~~~~-K-y~~~~~~~t~~~i~~Fv~d~l~GkL~p  132 (147)
T 3bj5_A           91 CPAVRLITLEEEMT-K-YKPESEELTAERITEFCHRFLEGKIKP  132 (147)
T ss_dssp             CSEEEEEECSSSCE-E-ECCSCCCCCHHHHHHHHHHHHTTCSCE
T ss_pred             CCEEEEEecccccc-c-CCCCcccCCHHHHHHHHHHHHcCCccc
Confidence            899999875 3321 1 1333 6788999999999998776643

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.80  E-value=1.2e-05  Score=57.75  Aligned_cols=79  Identities=10%  Similarity=0.029  Sum_probs=59.8

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ..+++|+++| ++|+.+.+.|++++..    +.|..+|.++.. ++++..++| ...  |++ +. ++.  .. ..+..+
T Consensus        17 ~~v~~f~~~~C~~C~~~~~~L~~l~~~----i~~~~vdi~~~~-~~el~~~~g-~~v--P~l-~~-~g~--~~-~~~g~~   83 (100)
T 1wjk_A           17 PVLTLFTKAPCPLCDEAKEVLQPYKDR----FILQEVDITLPE-NSTWYERYK-FDI--PVF-HL-NGQ--FL-MMHRVN   83 (100)
T ss_dssp             CEEEEEECSSCHHHHHHHHHTSTTSSS----SEEEEEETTSST-THHHHHHSS-SSC--SEE-EE-SSS--EE-EESSCC
T ss_pred             CEEEEEeCCCCcchHHHHHHHHHhhhC----CeEEEEECCCcc-hHHHHHHHC-CCC--CEE-EE-CCE--EE-EecCCC
Confidence            5677789999 9999999999876533    899999998322 678999999 888  987 33 333  22 245588


Q ss_pred             HHHHHHHHHHHhc
Q 021368          130 LDKIKTFGEDFLE  142 (313)
Q Consensus       130 ~~~i~~fi~~~~~  142 (313)
                      .+.|.+++.+++.
T Consensus        84 ~~~l~~~l~~~~~   96 (100)
T 1wjk_A           84 TSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987653

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=97.76  E-value=7.8e-05  Score=59.76  Aligned_cols=92  Identities=11%  Similarity=0.007  Sum_probs=70.6

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc----------------------ccccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE----------------------DVGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~----------------------~~~~~l~~~~~v  103 (313)
                      ++..+|.|| +.| +.|....+.|.+++.+|.+ .+.|+.|+++..                      +....+++.||+
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  110 (187)
T 1we0_A           31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (187)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence            456778899 999 9999999999999999985 488888888741                      013468889999


Q ss_pred             C------CCCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHHhc
Q 021368          104 T------GEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLE  142 (313)
Q Consensus       104 ~------~~~~P~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~~  142 (313)
                      .      ..  |++++++.++...+.+.|.    .+.++|.+.+..+..
T Consensus       111 ~~~~~g~~~--P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          111 LNEETGLAD--RGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             EETTTTEEC--EEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CcCCCCcee--eEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            8      66  9998997665444444443    378899999988765

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=96.96  E-value=3.5e-06  Score=64.25  Aligned_cols=66  Identities=17%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhcc---CeEEEEEEeCCCcc----------------------cccchhhhhCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNED----------------------VGKPVSEYFGIT  104 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~---~~v~f~~vd~~~~~----------------------~~~~l~~~~~v~  104 (313)
                      .++|.||++| ++|+...|.|.+++.+++   ..+.++.|+++...                      ....+++.|||.
T Consensus        28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  107 (143)
T 2lus_A           28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT  107 (143)
Confidence            6788899999 999999999999999993   35888888877531                      013788999999


Q ss_pred             CCCCcEEEEEcCCC
Q 021368          105 GEAPKVLAYTGNDD  118 (313)
Q Consensus       105 ~~~~P~i~~~~~~~  118 (313)
                      ++  |++++++.++
T Consensus       108 ~~--P~~~lid~~G  119 (143)
T 2lus_A          108 GI--PALVIVKKDG  119 (143)
Confidence            88  9988887443

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=97.74  E-value=3.5e-05  Score=62.48  Aligned_cols=91  Identities=14%  Similarity=0.193  Sum_probs=69.2

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++..+|.|| +.| ++|....|.|.+++.+|.+. +.|+.|+++...                         ....+++.
T Consensus        33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  112 (198)
T 1zof_A           33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD  112 (198)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHH
Confidence            456778899 899 99999999999999999753 888888886410                         13468899


Q ss_pred             hCCC-----CCCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHHh
Q 021368          101 FGIT-----GEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFL  141 (313)
Q Consensus       101 ~~v~-----~~~~P~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~  141 (313)
                      ||+.     ..  |++++++.++.....+.|.    .+.++|.+.+.+..
T Consensus       113 ~~v~~~~g~~~--P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          113 YDVLFEEAIAL--RGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             TTCEETTTEEC--EEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             hCCcccCCccc--ceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            9998     77  8888887665444444443    36889999988875

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.73  E-value=0.00012  Score=56.86  Aligned_cols=87  Identities=9%  Similarity=0.011  Sum_probs=63.4

Q ss_pred             ccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc--------------------cccchhhhhCCC---
Q 021368           51 KNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED--------------------VGKPVSEYFGIT---  104 (313)
Q Consensus        51 ~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~--------------------~~~~l~~~~~v~---  104 (313)
                      ..+|.|| +.| ++|....+.|.+++.++.+ .+.|+.|+++...                    ....+++.||+.   
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~  117 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ  117 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence            6777888 999 9999999999999999975 4888888886411                    045788999998   


Q ss_pred             -CCCCc--EEEEEcCCCCceeccCCCC----CHHHHHHHHHH
Q 021368          105 -GEAPK--VLAYTGNDDAKKHILDGEL----TLDKIKTFGED  139 (313)
Q Consensus       105 -~~~~P--~i~~~~~~~~~~~~~~g~~----~~~~i~~fi~~  139 (313)
                       ++  |  ++++++.++...+.+.|..    ..+.+.+.+.+
T Consensus       118 ~~~--p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          118 AGI--ANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTE--ECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CCC--eeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence             77  6  6667766554444444543    45666666654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=97.73  E-value=4.6e-05  Score=60.78  Aligned_cols=87  Identities=7%  Similarity=-0.011  Sum_probs=60.0

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCCc
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSDG  232 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v~~  232 (313)
                      .+++++|+|| +.||+.|...++.+.++..+++.. ++.+..|.++....                       ..|++..
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~-~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~  128 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI-NATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIK  128 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcc
Confidence            3678888888 999999999999999999999864 57777777664211                       1234432


Q ss_pred             ------------CceEEEEe-CCCCCcCceeecc---CcCHHHHHHHHHhc
Q 021368          233 ------------FPTILFFP-AGNKSFDPINVDV---DRTVVALYKFLKKN  267 (313)
Q Consensus       233 ------------~P~i~~~~-~g~~~~~~~~y~g---~~~~~~l~~fi~~~  267 (313)
                                  .|+.+++. +|..+.   .+.+   ....+.+++.|++.
T Consensus       129 ~~~~~g~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          129 EKTMYGRQVIGIERSTFLIGPTHRIVE---AWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             EECCC--CEEEECCEEEEECTTSBEEE---EECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccCcccCCcceEEEEECCCCEEEE---EEcCCCCCCCHHHHHHHHHHH
Confidence                        58888885 454432   3333   34467788877654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=97.72  E-value=4.9e-05  Score=62.61  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=37.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      .+|++||+||++||++|. .++.+.++..+|++. ++.+..+.|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~-g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPY-GLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC-CeEEEEEEcc
Confidence            478999999999999999 788999999999764 5888888865

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.71  E-value=0.00016  Score=57.55  Aligned_cols=95  Identities=8%  Similarity=0.039  Sum_probs=65.1

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCC--------cccccchhhh-hCCCCC----------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSEY-FGITGE----------  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~--------~~~~~~l~~~-~~v~~~----------  106 (313)
                      .++.++|.|++.| +.|....|.|.+++.+|.++ +.++.|.++.        .....+++++ +++..-          
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            4557788899999 99999999999999999875 8899998753        1113455555 554310          


Q ss_pred             --------------CCcE----EEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 --------------APKV----LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 --------------~~P~----i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                                    ..|+    .++++.++.....+.|..+.+.+.+.|.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~  170 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVR  170 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence                          0243    44555554455567788887777777766654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.70  E-value=0.00016  Score=57.10  Aligned_cols=90  Identities=8%  Similarity=0.051  Sum_probs=63.7

Q ss_pred             CCcEEEEEeCCCCc-cchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc------------------------------
Q 021368          178 SKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH------------------------------  225 (313)
Q Consensus       178 ~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~------------------------------  225 (313)
                      +++++|+||++||+ .|...++.+.++..+++.. .++.+..|.++..+.                              
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            78999999999997 6999999999999999642 357777776652100                              


Q ss_pred             ---ccCC---------CCcCceEEEEe-CCCCCcCceeecc-CcCHHHHHHHHHhcCCC
Q 021368          226 ---HRAK---------SDGFPTILFFP-AGNKSFDPINVDV-DRTVVALYKFLKKNASI  270 (313)
Q Consensus       226 ---~~~~---------v~~~P~i~~~~-~g~~~~~~~~y~g-~~~~~~l~~fi~~~~~~  270 (313)
                         ..|+         +...|+++++. +|..+.   .|.| ..+.+.|.+.|.+.+..
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~---~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKD---YIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEE---EEESSSCCHHHHHHHHHHHTTC
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeEEE---EEeCCCCCHHHHHHHHHHhhcc
Confidence               1111         33457788885 444432   4566 57899999999988653

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.70  E-value=9.3e-05  Score=52.07  Aligned_cols=75  Identities=20%  Similarity=0.351  Sum_probs=54.0

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c--CCCCcCceEEEEeCCCCCcCceeecc
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R--AKSDGFPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~--~~v~~~P~i~~~~~g~~~~~~~~y~g  253 (313)
                      .++.|.++||++|......+.+.        ++.+-.+|++.++.  +   +  -+..++|++++ .+|.      ... 
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~--------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~------~l~-   68 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN--------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGS------TLT-   68 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSC------EEE-
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc--------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCE------EEe-
Confidence            47789999999999998887764        46677788887654  2   1  25678999765 3333      222 


Q ss_pred             CcCHHHHHHHHHhcCCCC
Q 021368          254 DRTVVALYKFLKKNASIP  271 (313)
Q Consensus       254 ~~~~~~l~~fi~~~~~~~  271 (313)
                      ..+..+|.++|.+.++..
T Consensus        69 ~~~~~el~~~L~el~gL~   86 (92)
T 2lqo_A           69 NPSADEVKAKLVKIAGLE   86 (92)
T ss_dssp             SCCHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHhcCCc
Confidence            367888999999887653

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.69  E-value=0.00016  Score=57.67  Aligned_cols=93  Identities=9%  Similarity=-0.050  Sum_probs=63.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc--------ccccchhhhh----------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPVSEYF----------------  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~--------~~~~~l~~~~----------------  101 (313)
                      .++.++|.||+.| +.|....|.|.+++.+|.++ +.|+.|+++..        .....+++.+                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            4557788899999 99999999999999999874 99999987620        0011122222                


Q ss_pred             ---------------CCCCC---CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          102 ---------------GITGE---APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       102 ---------------~v~~~---~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                                     |+.+.   ..|++++++.++.....+.|..+.+.|.+.|.+.
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                           32210   1277777766655556678888888887776654

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.66  E-value=0.00013  Score=59.61  Aligned_cols=42  Identities=7%  Similarity=-0.006  Sum_probs=36.9

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD   89 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~   89 (313)
                      .++.++|.||+.| ++|....|.|.+++.+|.+. +.|+.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4457788899999 99999999999999999875 999999886

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.64  E-value=5.2e-05  Score=63.81  Aligned_cols=88  Identities=11%  Similarity=0.089  Sum_probs=62.4

Q ss_pred             CCCc-EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-------------------------c----c
Q 021368          177 ESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------------H----H  226 (313)
Q Consensus       177 ~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------------------------~----~  226 (313)
                      .++. +|++||++||+.|....+.+.++...|+.. ++.+..++++...                         .    .
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~-gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~  110 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  110 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHH
Confidence            3554 566789999999999999999999999754 5888888876421                         0    2


Q ss_pred             cCCCC-------cCceEEEEe-CCCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          227 RAKSD-------GFPTILFFP-AGNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       227 ~~~v~-------~~P~i~~~~-~g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      .|++.       .+|+++++. +|....   .+.|    .++.++|.+.|....
T Consensus       111 ~ygv~~~~~g~~~~p~~fIID~dG~I~~---~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          111 RLGLLHAESATHTVRGVFIVDARGVIRT---MLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HHTCCCTTCSSSCCEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCCcccceEEEECCCCeEEE---EEecCCcccchhHHHHHHHHHHH
Confidence            35665       889999985 444431   2223    257888988887653

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.62  E-value=4e-05  Score=59.77  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+|+++|.|| ++||++|...++.+.++..+++.. ++.+..+..+.
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~-~~~~v~vs~d~   74 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV-NAVVLGISVDP   74 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGC-SSEEEEEESSC
T ss_pred             CCCeEEEEecCCCCCCccccchhhccccccccccc-CceEeeecccc
Confidence            4688999998 999999999999999888888764 46666676654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=97.62  E-value=8.4e-06  Score=59.99  Aligned_cols=80  Identities=8%  Similarity=0.116  Sum_probs=52.0

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--cccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCC
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL  128 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~  128 (313)
                      .+++|+++| ++|+.+.|.|.+++..|    .++.||.+...  ....+++.+|+.++  |++ +.+ |. ....+.|..
T Consensus        21 ~vv~f~a~~C~~C~~~~~~l~~~~~~~----~~v~v~~~~~~~~~~~~l~~~~~v~~~--Pt~-~~~-g~-~v~~~~~~~   91 (116)
T 2e7p_A           21 PVVVFSKTYCGYCNRVKQLLTQVGASY----KVVELDELSDGSQLQSALAHWTGRGTV--PNV-FIG-GK-QIGGCDTVV   91 (116)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHHHTCCC----EEEEGGGSTTHHHHHHHHHHHHSCCSS--CEE-EET-TE-EEECHHHHH
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCCCe----EEEEccCCCChHHHHHHHHHHhCCCCc--CEE-EEC-CE-EECChHHHH
Confidence            455699999 99999999999987553    45555554410  01368899999988  999 543 32 112222222


Q ss_pred             ---CHHHHHHHHHHH
Q 021368          129 ---TLDKIKTFGEDF  140 (313)
Q Consensus       129 ---~~~~i~~fi~~~  140 (313)
                         +.+.|.+++.+.
T Consensus        92 ~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           92 EKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHTTCHHHHHHHT
T ss_pred             HHHhCChHHHHHHHc
Confidence               556777777764

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.62  E-value=0.00019  Score=57.42  Aligned_cols=42  Identities=7%  Similarity=-0.016  Sum_probs=36.8

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD   89 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~   89 (313)
                      .++..+|.||+.| +.|....|.|.+++.++.++ +.|+.|+++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d   91 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCN   91 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            3457788899999 99999999999999999874 999999886

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=97.62  E-value=0.00013  Score=58.49  Aligned_cols=88  Identities=9%  Similarity=-0.002  Sum_probs=61.6

Q ss_pred             CCCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccC
Q 021368          177 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~  228 (313)
                      .+++++|+||+ +||+.|...++.+.++..++++. ++.+..|..+....                           ..|
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~y  107 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHh
Confidence            36899999995 99999999999999999988753 57777777654211                           123


Q ss_pred             CCC------cCceEEEEe-CCCCCcCceeeccC----cCHHHHHHHHHhcC
Q 021368          229 KSD------GFPTILFFP-AGNKSFDPINVDVD----RTVVALYKFLKKNA  268 (313)
Q Consensus       229 ~v~------~~P~i~~~~-~g~~~~~~~~y~g~----~~~~~l~~fi~~~~  268 (313)
                      ++.      ..|+.+++. +|..+.   .+.|.    .+.+.|.+.|....
T Consensus       108 gv~~~~~g~~~p~~~lID~~G~i~~---~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          108 DNMREDEGLADRATFVVDPQGIIQA---IEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCccCCCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHHH
Confidence            443      269999995 444432   34342    36788888887764

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.61  E-value=6.8e-05  Score=52.29  Aligned_cols=54  Identities=19%  Similarity=0.391  Sum_probs=38.9

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC--Cccc--ccC-CCCcCceEEEEeCCCC
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT--TNEH--HRA-KSDGFPTILFFPAGNK  244 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~--~~~~--~~~-~v~~~P~i~~~~~g~~  244 (313)
                      .++.|+++||++|+.+.+.+.+.        .+.+..+|++  ....  ..+ ++.++|++++  +|..
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~--------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~--~g~~   65 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK--------GVKYTDIDASTSLRQEMVQRANGRNTFPQIFI--GDYH   65 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH--------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEEE--TTEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence            47789999999999999988876        2456677777  1111  356 8899999854  5543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=97.60  E-value=4.4e-05  Score=52.57  Aligned_cols=77  Identities=9%  Similarity=0.198  Sum_probs=57.3

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc-ccchhhhhC--CCCCCCcEEEEEcCCCCceeccCCCC
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFG--ITGEAPKVLAYTGNDDAKKHILDGEL  128 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~-~~~l~~~~~--v~~~~~P~i~~~~~~~~~~~~~~g~~  128 (313)
                      +++|+++| +.|+.+.+.|++++.++.+ +.|..+|.+.... ...+.+.+|  +..+  |++ +++ |.  ..  .|  
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~v--P~i-~~~-g~--~i--~~--   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETV--PQI-FVD-QQ--HI--GG--   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCS--CEE-EET-TE--EE--ES--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCcee--CeE-EEC-CE--EE--EC--
Confidence            56688899 9999999999999998877 8999999875210 136888899  8888  998 443 32  11  22  


Q ss_pred             CHHHHHHHHHHHh
Q 021368          129 TLDKIKTFGEDFL  141 (313)
Q Consensus       129 ~~~~i~~fi~~~~  141 (313)
                       .+.|.+++.+.+
T Consensus        72 -~~~l~~~~~~~~   83 (85)
T 1ego_A           72 -YTDFAAWVKENL   83 (85)
T ss_dssp             -SHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhc
Confidence             368888887754

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=97.59  E-value=8.2e-05  Score=60.87  Aligned_cols=43  Identities=23%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      .+|++||+||++||++| ..++.+.++..+|++. ++.+..|.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECc
Confidence            47899999999999999 6788999999999864 5888888765

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.53  E-value=1.2e-05  Score=62.07  Aligned_cols=87  Identities=10%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc---cc------ccCCCCcCceEEE
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---EH------HRAKSDGFPTILF  238 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---~~------~~~~v~~~P~i~~  238 (313)
                      +.+.+.+.. . . ++.|+++||++|+.+.+.+.+++        +.+..+|++..   ..      ..+++.++|++++
T Consensus        40 ~~~~~~i~~-~-~-Vvvf~~~~Cp~C~~~k~~L~~~~--------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi  108 (146)
T 2ht9_A           40 NQIQETISD-N-C-VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV  108 (146)
T ss_dssp             HHHHHHHHH-C-S-EEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             HHHHHHhcC-C-C-EEEEECCCChhHHHHHHHHHHcC--------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEE
Confidence            344454432 2 3 44499999999999999998873        23444566544   11      3568899999853


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                        +|..+.......+......|.++|...
T Consensus       109 --~G~~igG~d~l~~l~~~g~L~~~L~~~  135 (146)
T 2ht9_A          109 --NGTFIGGATDTHRLHKEGKLLPLVHQC  135 (146)
T ss_dssp             --TTEEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred             --CCEEEeCchHHHHHHHcChHHHHHHHc
Confidence              655432000011112234577777664

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.52  E-value=0.00028  Score=56.85  Aligned_cols=42  Identities=29%  Similarity=0.503  Sum_probs=35.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  220 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~  220 (313)
                      +.+.+++.|+++||++|..+.+.+.++...+..  .+.+..+..
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEecc
Confidence            357889999999999999999999999988865  566666654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.51  E-value=0.00015  Score=56.80  Aligned_cols=43  Identities=21%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+|| +.||++|...++.+.++..++ .  ++.+..|..+.
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~--~v~vv~Is~d~   85 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S--NTIVLCISADL   85 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T--TEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CCEEEEEeCCC
Confidence            4678999999 899999999999999999988 3  57777777654

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=97.50  E-value=0.00043  Score=57.89  Aligned_cols=88  Identities=7%  Similarity=0.066  Sum_probs=62.4

Q ss_pred             CCCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368          177 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------  225 (313)
                      .+++++|+||+ .||+.|...++.+.++..+|++. ++.+..|.++....                              
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~-gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~  154 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI-NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQIS  154 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHH
Confidence            46899999999 99999999999999999999864 57777777764221                              


Q ss_pred             ccCCCC------cCceEEEEeCCCCCcCceeecc----CcCHHHHHHHHHhc
Q 021368          226 HRAKSD------GFPTILFFPAGNKSFDPINVDV----DRTVVALYKFLKKN  267 (313)
Q Consensus       226 ~~~~v~------~~P~i~~~~~g~~~~~~~~y~g----~~~~~~l~~fi~~~  267 (313)
                      ..|++.      .+|+++++.....+ .. .+.+    ..+.+++++.|...
T Consensus       155 ~~ygv~~~~~g~~~p~~flID~~G~I-~~-~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          155 KDYGVYLEDQGHTLRGLFIIDEKGVL-RQ-ITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBE-EE-EEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCCccceEEEEcCCCeE-EE-EEecCCCCCCCHHHHHHHHHHh
Confidence            123554      57999999544443 11 2222    35678888888765

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.50  E-value=0.00014  Score=49.58  Aligned_cols=66  Identities=12%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEEEeCCCCCcCceeeccCc
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR  255 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~  255 (313)
                      +++|+++||++|+.+...+.+.        ++.+..+|++.+..      ..+++.++|++++  +|..+      .   
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~--~g~~i------~---   63 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQHI------G---   63 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTEEE------E---
T ss_pred             EEEEECCCChhHHHHHHHHHHC--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE------e---
Confidence            6779999999999999888775        24455667765432      2467889999853  55432      2   


Q ss_pred             CHHHHHHHHHh
Q 021368          256 TVVALYKFLKK  266 (313)
Q Consensus       256 ~~~~l~~fi~~  266 (313)
                      ....|.+++.+
T Consensus        64 g~~~i~~~~~~   74 (82)
T 1fov_A           64 GYDDLYALDAR   74 (82)
T ss_dssp             SHHHHHHHHHT
T ss_pred             CHHHHHHHHHC
Confidence            23567777654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.47  E-value=0.00035  Score=54.88  Aligned_cols=93  Identities=13%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             CCCccEEEEEeeC-C-chhhhhHHHHHHHHhccC---eEEEEEEeCCCcc----cccchh--------------------
Q 021368           48 SPIKNQLLLFAVS-N-DSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED----VGKPVS--------------------   98 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~-~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~----~~~~l~--------------------   98 (313)
                      .++..+|.||+.| + .|....+.+.++..++.+   .+.|+.|+++...    ....++                    
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            3456788899999 7 999999999999998875   3889999886310    011122                    


Q ss_pred             -hhh----------------CCCCCCCcEEEEEcCCCCceeccCCCC--CHHHHHHHHHHHhc
Q 021368           99 -EYF----------------GITGEAPKVLAYTGNDDAKKHILDGEL--TLDKIKTFGEDFLE  142 (313)
Q Consensus        99 -~~~----------------~v~~~~~P~i~~~~~~~~~~~~~~g~~--~~~~i~~fi~~~~~  142 (313)
                       +.+                ++..  .|++++++.++.....+.|..  +.+.|.+.|.+.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIH--QSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCS--CCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeee--eeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence             222                2333  377777776654455556654  58899999998875

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.46  E-value=0.00061  Score=53.69  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=35.8

Q ss_pred             CCCcEEEEEeCCCCc-cchhhhHHHHHHHHHhcCC-CcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~  221 (313)
                      .+|+++|+||.+||+ .|...++.+.++.+.++.. ..+.+..|.++
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            579999999999996 7999999998888877543 25777766654

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.46  E-value=0.00015  Score=51.76  Aligned_cols=57  Identities=9%  Similarity=0.103  Sum_probs=41.6

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----C-CCCcCceEEEEeCCCC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----A-KSDGFPTILFFPAGNK  244 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~-~v~~~P~i~~~~~g~~  244 (313)
                      ...-++.|+++||++|+.+...+.+.        ++.+..+|++.+..  ..    . +..++|++++  +|..
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~--------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi--~g~~   77 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK--------GVEFQEYCIDGDNEAREAMAARANGKRSLPQIFI--DDQH   77 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH--------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEE--TTEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC--------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEE--CCEE
Confidence            45567789999999999999999876        34566678777643  22    2 7889998844  5543

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=97.45  E-value=0.00049  Score=56.73  Aligned_cols=92  Identities=15%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++..+|.|| +.| +.|....+.|.+++.+|.+ .+.|+.|.++...                         ....+++.
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            356777899 899 9999999999999999964 4888888876410                         13468889


Q ss_pred             hCCC------CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHHhc
Q 021368          101 FGIT------GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFLE  142 (313)
Q Consensus       101 ~~v~------~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~~  142 (313)
                      ||+.      ..  |++++++.++...+.+.|    .++.+++.+.+..+..
T Consensus       136 ygv~~~~~g~~~--P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~  185 (220)
T 1zye_A          136 YGVLLEGPGLAL--RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQF  185 (220)
T ss_dssp             TTCEETTTTEEC--EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             hCCeecCCCccc--ceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence            9998      66  999899766544443333    3677999999988765

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.42  E-value=0.00027  Score=57.40  Aligned_cols=91  Identities=14%  Similarity=0.104  Sum_probs=68.7

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++..+|.|| +.| +.|....+.|.+++.+|.+ .+.|+.|+++...                         ....+++.
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            456777899 899 9999999999999999975 4889999886410                         03467889


Q ss_pred             hCCC------CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHHh
Q 021368          101 FGIT------GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  141 (313)
Q Consensus       101 ~~v~------~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~  141 (313)
                      ||+.      ..  |++++++.++...+.+.|    .++.++|.+.+..+.
T Consensus       116 ygv~~~~~g~~~--P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          116 YGVLKEEDGVAY--RGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HTCEETTTTEEC--EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             cCCccCCCCcee--eEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            9998      67  988888766544444333    356789999888775

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.40  E-value=0.0002  Score=51.49  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc--cc-----c----cCCCCcCceEEEEeCCCCCc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EH-----H----RAKSDGFPTILFFPAGNKSF  246 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~--~~-----~----~~~v~~~P~i~~~~~g~~~~  246 (313)
                      ++..+++|+++||++|+.+.+.+.+.+        +.+-.+|++..  +.     .    ..+..++|++++  +|.   
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~--------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~---   86 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLG--------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE---   86 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHT--------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT---
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcC--------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC---
Confidence            445677899999999999999988763        33444555542  11     1    247889999887  331   


Q ss_pred             CceeeccCcCHHHHHHHH
Q 021368          247 DPINVDVDRTVVALYKFL  264 (313)
Q Consensus       247 ~~~~y~g~~~~~~l~~fi  264 (313)
                         .+.|..+.+.|.++|
T Consensus        87 ---~~igg~~~~~l~~~L  101 (103)
T 3nzn_A           87 ---KAIVGFKEKEIRESL  101 (103)
T ss_dssp             ---EEEESCCHHHHHHHT
T ss_pred             ---EEEEcCCHHHHHHHh
Confidence               344567888887765

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.39  E-value=0.0033  Score=49.85  Aligned_cols=98  Identities=14%  Similarity=0.108  Sum_probs=69.9

Q ss_pred             cChHHHhh-------cCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc------------
Q 021368          168 NNFDEIVL-------DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------------  225 (313)
Q Consensus       168 ~~f~~~l~-------~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------------  225 (313)
                      .+|.+.+.       ...|..+|+++++||..|..+....   ..+.+.++.  ++.+...|++..+.            
T Consensus        38 gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e~~~~~~~~~~~~~  115 (178)
T 2ec4_A           38 GSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDSNRARFLTMCNRHF  115 (178)
T ss_dssp             SCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCchhhhhhhhhhhhhh
Confidence            46666553       3468999999999999998886443   446666665  68888899887651            


Q ss_pred             --------ccCCCCcCceEEEEeC-CCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          226 --------HRAKSDGFPTILFFPA-GNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       226 --------~~~~v~~~P~i~~~~~-g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                              ..+++.++|+++++.. +....-..+..|..+.+.|+..|..-
T Consensus       116 g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          116 GSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             CHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence                    2278999999999943 22221123688999998888877654

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00012  Score=51.34  Aligned_cols=68  Identities=13%  Similarity=0.138  Sum_probs=46.7

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc---------cc--ccCCCCcCceEEEEeCCCCCcCce
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---------EH--HRAKSDGFPTILFFPAGNKSFDPI  249 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~---------~~--~~~~v~~~P~i~~~~~g~~~~~~~  249 (313)
                      .++.|+++||++|+.+...+.++.        +.+-.+|++..         ..  ..+++.++|++++  +|.      
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g--------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~------   76 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG--------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDK------   76 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTE------
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC--------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCE------
Confidence            367799999999999998888763        23334555521         11  3457889999987  442      


Q ss_pred             eeccCcCHHHHHHHHH
Q 021368          250 NVDVDRTVVALYKFLK  265 (313)
Q Consensus       250 ~y~g~~~~~~l~~fi~  265 (313)
                      .. |..+.+.|.++|+
T Consensus        77 ~i-~G~~~~~l~~~l~   91 (92)
T 3ic4_A           77 HV-LGYNEEKLKELIR   91 (92)
T ss_dssp             EE-ESCCHHHHHHHHH
T ss_pred             EE-eCCCHHHHHHHhc
Confidence            23 3468899999885

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.35  E-value=5.8e-05  Score=59.32  Aligned_cols=91  Identities=9%  Similarity=0.018  Sum_probs=59.3

Q ss_pred             cCCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCC
Q 021368          176 DESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD  231 (313)
Q Consensus       176 ~~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v~  231 (313)
                      ..+|+++|+|| ++||++|...++.+.++..+|+.. ++.+..+..+....                       ..|++.
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~  109 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVY  109 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc-CceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCc
Confidence            46788888888 999999999888888888888764 46676676654221                       123331


Q ss_pred             ----------cCceEEEEeCCCCCcCceee----ccCcCHHHHHHHHHhcC
Q 021368          232 ----------GFPTILFFPAGNKSFDPINV----DVDRTVVALYKFLKKNA  268 (313)
Q Consensus       232 ----------~~P~i~~~~~g~~~~~~~~y----~g~~~~~~l~~fi~~~~  268 (313)
                                ..|+.++......+ ....+    .+..+.+++++-+++.+
T Consensus       110 ~~~~~~~~~~~~p~tflID~~G~I-~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A          110 HEDLKGLKMVAKRAVFIVKPDGTV-AYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             EEEETTEEEEECCEEEEECTTSBE-EEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             ccccccCcCCeeeEEEEECCCCEE-EEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence                      35777777543333 11111    23457888888887654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.34  E-value=0.00044  Score=54.60  Aligned_cols=83  Identities=8%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--------------------------------------
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------------------------   91 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--------------------------------------   91 (313)
                      ..++.|+..| ++|..+.|.+.++..++.+ +.|..++..-.                                      
T Consensus        24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~~  102 (175)
T 3gyk_A           24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANETG  102 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHHH
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHH
Confidence            4566788888 9999999999999999877 77766663210                                      


Q ss_pred             ----------------------------ccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           92 ----------------------------DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        92 ----------------------------~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                                                  ..+..+++.+||.++  |++++ + |  .  .+.|..+.+.|.+.|.+.+.
T Consensus       103 l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gt--Pt~~i-~-g--~--~~~G~~~~~~l~~~i~~~l~  173 (175)
T 3gyk_A          103 VLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGT--PSFVV-E-D--A--LVPGFVEQSQLQDAVDRARK  173 (175)
T ss_dssp             HHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSS--SEEEE-T-T--E--EECSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccC--CEEEE-C-C--E--EeeCCCCHHHHHHHHHHHHh
Confidence                                        003356788999999  99966 2 2  2  45788999999999988753

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.33  E-value=0.00025  Score=57.22  Aligned_cols=43  Identities=30%  Similarity=0.463  Sum_probs=38.4

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      ..+++++.||++||++|+.+.+.+.++...+.+  .+.+..+++.
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence            467899999999999999999999999998876  6888888886

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.33  E-value=0.0012  Score=51.57  Aligned_cols=93  Identities=10%  Similarity=0.021  Sum_probs=65.1

Q ss_pred             CCCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------------------cccchhhhhCCCC
Q 021368           48 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITG  105 (313)
Q Consensus        48 ~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------------------~~~~l~~~~~v~~  105 (313)
                      .++..+|.||+.|  ++|....|.+.+++.++ ..+.|+.|+.+...                    ....+.+.||+..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            3457788899998  89999999999999999 55888888876411                    1345667788865


Q ss_pred             C----CCcEEEEEcCCCCceeccCC-----CCCHHHHHHHHHHHh
Q 021368          106 E----APKVLAYTGNDDAKKHILDG-----ELTLDKIKTFGEDFL  141 (313)
Q Consensus       106 ~----~~P~i~~~~~~~~~~~~~~g-----~~~~~~i~~fi~~~~  141 (313)
                      .    ..|+.++++.++...+.+.|     ..+.+.+.+.+.+.+
T Consensus       122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            2    13777777765544444432     335678888887764

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.32  E-value=0.00021  Score=56.33  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=35.7

Q ss_pred             CCCcEEEEEe-CCCCccchh-hhHHHHHHHHHhcCCCcE-EEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQA-FEPTYNKLAKHLRGVDSI-VIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~-~~~~~~~la~~~~~~~~v-~~~~vd~~~  222 (313)
                      .+++++|+|| ++||+.|.. .++.+.++..++++. ++ .+..|..+.
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~   77 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK-GVDIIACMAVND   77 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT-TCCEEEEEESSC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCC
Confidence            4567888776 999999999 899999999988753 47 777777654

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.31  E-value=0.00021  Score=51.51  Aligned_cols=63  Identities=14%  Similarity=0.265  Sum_probs=42.2

Q ss_pred             ChHHHhhcCCCcEEEEEeC-----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEE
Q 021368          169 NFDEIVLDESKDVLLEIYA-----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTIL  237 (313)
Q Consensus       169 ~f~~~l~~~~k~~lv~fy~-----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~  237 (313)
                      .+++.+.  ...++| |++     +||++|+.+.+.+.++        ++.+..+|++.+..      ..++..++|+++
T Consensus         9 ~~~~~i~--~~~vvv-f~~g~~~~~~C~~C~~~~~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~   77 (105)
T 2yan_A            9 RLKVLTN--KASVML-FMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKAYSNWPTYPQLY   77 (105)
T ss_dssp             HHHHHHT--SSSEEE-EESBCSSSBCTTHHHHHHHHHHHH--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred             HHHHHhc--cCCEEE-EEecCCCCCCCccHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence            3445442  234444 776     9999999999998877        25567778876543      235788999984


Q ss_pred             EEeCCCC
Q 021368          238 FFPAGNK  244 (313)
Q Consensus       238 ~~~~g~~  244 (313)
                      +  +|..
T Consensus        78 i--~g~~   82 (105)
T 2yan_A           78 V--KGEL   82 (105)
T ss_dssp             E--TTEE
T ss_pred             E--CCEE
Confidence            3  5554

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.31  E-value=0.00062  Score=54.65  Aligned_cols=92  Identities=12%  Similarity=0.181  Sum_probs=67.9

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhh
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~   99 (313)
                      .++..+|.|| +.| +.|....+.|.+++.+|.+ .+.|+.|+++...                         ....+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            3456777899 999 9999999999999999963 3888888876410                         0246788


Q ss_pred             hhCCC-----CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHHh
Q 021368          100 YFGIT-----GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  141 (313)
Q Consensus       100 ~~~v~-----~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~  141 (313)
                      .||+.     ..  |++++++.++...+.+.|    ..+.+++.+.+..+.
T Consensus       110 ~~gv~~~~g~~~--P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVAL--RAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEEC--CEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCcee--eEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            99998     66  998888766544444433    246788888887765

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.30  E-value=3e-05  Score=57.44  Aligned_cols=57  Identities=14%  Similarity=0.229  Sum_probs=39.7

Q ss_pred             EEEEeCCCCccchhh-hHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c-ccCCCCcCceEEEEeCCCCC
Q 021368          182 LLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRAKSDGFPTILFFPAGNKS  245 (313)
Q Consensus       182 lv~fy~~~C~~C~~~-~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~-~~~~v~~~P~i~~~~~g~~~  245 (313)
                      ++.|+++||++|+.+ .+.+.+++.     ..+.+..+|++.+.        . ..+++.++|+++  .+|..+
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~-----~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i   93 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV-----PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY--INGKHI   93 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE--ETTEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC-----CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            667999999999998 777765531     13667777777653        1 356889999874  466543

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=97.30  E-value=0.00024  Score=58.17  Aligned_cols=88  Identities=8%  Similarity=0.065  Sum_probs=62.6

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------  225 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------  225 (313)
                      .+++++|+|| ++||++|...++.+.++..+|+.. ++.++.|.++....                              
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  125 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  125 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHH
Confidence            4679999999 999999999999999999999753 57777777654211                              


Q ss_pred             ccCCCC------cCceEEEEeC-CCCCcCceeecc----CcCHHHHHHHHHhcC
Q 021368          226 HRAKSD------GFPTILFFPA-GNKSFDPINVDV----DRTVVALYKFLKKNA  268 (313)
Q Consensus       226 ~~~~v~------~~P~i~~~~~-g~~~~~~~~y~g----~~~~~~l~~fi~~~~  268 (313)
                      ..|++.      ..|+++++.. |..+.   .+.|    ..+.+++++.|....
T Consensus       126 ~~ygv~~~~~g~~~p~~~lID~~G~I~~---~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          126 KDYGVYLEDSGHTLRGLFIIDDKGILRQ---ITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEE---EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCcccceEEEECCCCEEEE---EEecCCCCCCCHHHHHHHHHHhh
Confidence            123442      4899999954 44432   2323    246788888887753

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.29  E-value=0.00056  Score=56.07  Aligned_cols=92  Identities=11%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhh
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~   99 (313)
                      .++..+|.|| +.| +.|....+.|.+++.+|.+ .+.|+.|+++...                         ....+++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            3446777788 899 9999999999999999963 4888888876410                         1346788


Q ss_pred             hhCCC-----CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHHh
Q 021368          100 YFGIT-----GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  141 (313)
Q Consensus       100 ~~~v~-----~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~  141 (313)
                      .||+.     ..  |++++++.++...+.+.|    .++.+++.+.+..+.
T Consensus       131 ~ygv~~~~g~~~--p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSL--RAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEEC--EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcc--cEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99998     66  888888766544444333    356889998888765

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.27  E-value=0.00027  Score=59.12  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=37.1

Q ss_pred             CCCcEEEEEe-CCCCccch-hhhHHHHHHHHHhcCCCcE-EEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQ-AFEPTYNKLAKHLRGVDSI-VIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~-~~~~~~~~la~~~~~~~~v-~~~~vd~~~  222 (313)
                      .+++++|+|| ++||++|. ..++.+.++...+++. ++ .+..+..+.
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~-~~~~vv~is~d~   79 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVND   79 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESSC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEcCC
Confidence            4678999999 99999999 8999999999998754 46 666676654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.27  E-value=0.00099  Score=53.90  Aligned_cols=96  Identities=6%  Similarity=-0.062  Sum_probs=66.5

Q ss_pred             CCCccEEEEEeeC-Cc-hhhhhHHHHHHHHhcc----CeEEEEEEeCCCcc-------------------------cccc
Q 021368           48 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFK----GKLIFVYVQMDNED-------------------------VGKP   96 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~-c~~~~~~~~~~a~~~~----~~v~f~~vd~~~~~-------------------------~~~~   96 (313)
                      .++.++|.|+..| ++ |....|.|.++..++.    +.+.|+.|+++...                         ....
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            3557788899999 87 9999999999887775    35888888877310                         0135


Q ss_pred             hhhhhCCC-CC-------------CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021368           97 VSEYFGIT-GE-------------APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus        97 l~~~~~v~-~~-------------~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      +++.|||. ..             +.|++++++.++.....+.|..+.+.+.+.|.+.+..
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~  180 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS  180 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            77888887 23             1135566666655555677778888888888887753

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=97.27  E-value=0.00023  Score=56.10  Aligned_cols=43  Identities=5%  Similarity=0.056  Sum_probs=35.1

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+|| +.||+.|....+.+.++..++ .  ++.+..|.++.
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~--~v~vv~Is~d~   89 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-E--GVDVTVVSMDL   89 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C--CceEEEEeCCC
Confidence            3678999999 899999999999999998877 3  57777666554

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.27  E-value=0.00024  Score=55.48  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             CCCcEEEEEe-CCCCccch-hhhHHHHHHHHHhcCCCcEE-EEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQ-AFEPTYNKLAKHLRGVDSIV-IAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~-~~~~~~~~la~~~~~~~~v~-~~~vd~~~  222 (313)
                      .+++++|+|| +.||+.|. ...+.+.++..++++. ++. +..|..+.
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~d~   81 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVND   81 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESSC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC
Confidence            4678999999 89999999 8999999999988643 455 66565543

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.23  E-value=0.00042  Score=56.22  Aligned_cols=43  Identities=26%  Similarity=0.367  Sum_probs=36.4

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+|| +.||+.|....+.+.++..++ .  ++.++.|.++.
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~--~v~vv~Is~D~  120 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E--NTVVLCISSDL  120 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T--TEEEEEEESSC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C--CCEEEEEECCC
Confidence            4688999999 689999999999999999988 3  57888777665

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=97.21  E-value=0.00023  Score=55.59  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=35.5

Q ss_pred             CCCcEEEEEeC-CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+||+ .||++|...++.+.++..++ .  ++.+..|..+.
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~--~v~vv~is~d~   84 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D--NTVVLTVSMDL   84 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CcEEEEEECCC
Confidence            46789999995 99999999999999998887 3  57777776654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.21  E-value=0.00014  Score=57.61  Aligned_cols=43  Identities=14%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             CcEEEEEeCCCCccchhh-hHHHHHHHHHhcCCCcEE-EEEEeCCC
Q 021368          179 KDVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIV-IAKMDGTT  222 (313)
Q Consensus       179 k~~lv~fy~~~C~~C~~~-~~~~~~la~~~~~~~~v~-~~~vd~~~  222 (313)
                      +.++++||++||++|... ++.|.++..+++.. ++. +..|+.+.
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~-g~~~vv~Is~d~   89 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK-GVDSVICVAIND   89 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT-TCSEEEEEESSC
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCC
Confidence            467788999999999998 99999999988753 455 66676654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.16  E-value=0.0005  Score=56.50  Aligned_cols=83  Identities=13%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeC---------------------------------------
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM---------------------------------------   88 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~---------------------------------------   88 (313)
                      ....++.|+.+| ++|+++.+.+.+++..  + +.|..+..                                       
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~-v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~  162 (216)
T 1eej_A           86 EKHVITVFTDITCGYCHKLHEQMADYNAL--G-ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  162 (216)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence            345677799999 9999999999998764  3 55554432                                       


Q ss_pred             -CCc-ccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368           89 -DNE-DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus        89 -~~~-~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       ... +.+..+++.+||+++  |++ ++.+|.    .+.|..+.+.|.+++.+..
T Consensus       163 ~~~~v~~~~~l~~~~gV~gt--Pt~-v~~dG~----~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          163 CDVDIADHYALGVQLGVSGT--PAV-VLSNGT----LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CSCCHHHHHHHHHHHTCCSS--SEE-ECTTSC----EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcc--CEE-EEcCCe----EecCCCCHHHHHHHHHHhh
Confidence             110 114567889999999  999 554332    4578889999999988764

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.16  E-value=0.00042  Score=50.60  Aligned_cols=54  Identities=11%  Similarity=0.357  Sum_probs=36.9

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc----cc------ccCCCCcCceEEEEeCCCCC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----EH------HRAKSDGFPTILFFPAGNKS  245 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----~~------~~~~v~~~P~i~~~~~g~~~  245 (313)
                      ++.|+++||++|+.+.+.|.++        ++.+..+|++..    ..      ...+..++|++++  +|..+
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi--~g~~i   84 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL--------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFV--CGKHI   84 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEE--TTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            6779999999999999988875        233445566542    11      1247889999844  66543

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.15  E-value=0.00044  Score=55.79  Aligned_cols=44  Identities=25%  Similarity=0.479  Sum_probs=38.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      ..++++|.|++.||++|..+.+.+.++...+.+  .+.|..+++..
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~~   66 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVVW   66 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECCC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCCC
Confidence            357899999999999999999999999988876  68888888763

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.10  E-value=0.0011  Score=54.74  Aligned_cols=91  Identities=11%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             CCCccEEEEEe-eC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc-------------------------cccchhh
Q 021368           48 SPIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~-------------------------~~~~l~~   99 (313)
                      .++..+|.||+ .| +.|....|.|.++..+|.++ +.|+.|.++...                         ....+.+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            34567778885 99 99999999999999999763 888888887421                         1246778


Q ss_pred             hhCCC------CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHH
Q 021368          100 YFGIT------GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDF  140 (313)
Q Consensus       100 ~~~v~------~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~  140 (313)
                      .||+.      ..  |+.++++.++...+.+.|    ....+++.+.+...
T Consensus       148 ~ygv~~~~~g~~~--P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          148 AYGVFDEEDGNAF--RGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HTTCBCTTTSSBC--EEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeecCCCCcc--ceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            89998      56  888888766544444333    24567777777654

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.09  E-value=0.00072  Score=54.10  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             CCc-EEEEEeCCCCccchh-hhHHHHHHHHHhcCCCcEE-EEEEeCCC
Q 021368          178 SKD-VLLEIYAPWCGHCQA-FEPTYNKLAKHLRGVDSIV-IAKMDGTT  222 (313)
Q Consensus       178 ~k~-~lv~fy~~~C~~C~~-~~~~~~~la~~~~~~~~v~-~~~vd~~~  222 (313)
                      +++ ++++||++||+.|.. -++.|.++..+|+.. ++. +..++.+.
T Consensus        56 Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~  102 (184)
T 3uma_A           56 GKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR-GVDDIAVVAVND  102 (184)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESSC
T ss_pred             CCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence            554 556667999999999 699999999999764 455 66676654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.02  E-value=0.0014  Score=53.67  Aligned_cols=82  Identities=13%  Similarity=0.201  Sum_probs=58.3

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC--------------------------------------
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD--------------------------------------   89 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~--------------------------------------   89 (313)
                      ....++.|+.+| ++|+++.+.+.++...  + +.|.++...                                      
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL--G-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            335567799999 9999999999997763  4 555544321                                      


Q ss_pred             --Cc-ccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368           90 --NE-DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus        90 --~~-~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        .. ..+..+++.+||+++  |++++ .+|.    .+.|..+.+.|.+++.+.
T Consensus       163 ~~~~v~~~~~l~~~~gV~gT--Pt~vi-~nG~----~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          163 TPNIVKKHYELGIQFGVRGT--PSIVT-STGE----LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CSSHHHHHHHHHHHHTCCSS--CEEEC-TTSC----CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCCcC--CEEEE-eCCE----EecCCCCHHHHHHHHHhc
Confidence              00 013567789999999  99966 4342    457888999999998763

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.01  E-value=0.00043  Score=48.36  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=38.9

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEEEeCCCC
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~~~~g~~  244 (313)
                      .++.|+++||++|+.+...+.+.        ++.+..+|++.+..      ..+++.++|+++  .+|..
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~--~~g~~   66 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK--------GAEFNEIDASATPELRAEMQERSGRNTFPQIF--IGSVH   66 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT--------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE--ETTEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence            47789999999999998888764        35566778776533      246788999753  35543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.98  E-value=0.001  Score=51.05  Aligned_cols=78  Identities=19%  Similarity=0.340  Sum_probs=55.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC----------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------------  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------------  222 (313)
                      +.+.+++.|..++|++|+.+.+.+.++     +  ++.+...+.-.                                  
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~   85 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFP   85 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence            467899999999999999999987654     1  34444332111                                  


Q ss_pred             ---ccc-----------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          223 ---NEH-----------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       223 ---~~~-----------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                         ..+           ..++|+++|++++ .+|.      .+.|..+.+.|.++|.+..
T Consensus        86 ~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~------~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           86 VGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR------TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             TTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC------EEESCCCTTHHHHHHHHTS
T ss_pred             CccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE------EeeCCCCHHHHHHHHHHHH
Confidence               000           3458999999998 4443      5778788899999998765

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.91  E-value=0.0011  Score=45.71  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=46.6

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc-----c-ccCCC-----CcCceEEEEeCCCCCcCc
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-HRAKS-----DGFPTILFFPAGNKSFDP  248 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----~-~~~~v-----~~~P~i~~~~~g~~~~~~  248 (313)
                      ..++.|+++||++|+.+...+.+..     . .+.+..+|.....     . ...+.     .++|++++  +|..+   
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~-----i-~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i---   72 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN-----I-AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI---   72 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT-----C-CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE---
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC-----C-CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE---
Confidence            3477899999999999988887653     1 3455555554431     1 33455     89999865  55432   


Q ss_pred             eeeccCcCHHHHHHHHHhcCC
Q 021368          249 INVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       249 ~~y~g~~~~~~l~~fi~~~~~  269 (313)
                          |  ....+.+++.+.++
T Consensus        73 ----~--g~~~i~~~~~~~~~   87 (89)
T 3msz_A           73 ----G--GFTELKANADKILN   87 (89)
T ss_dssp             ----E--SHHHHHHTHHHHTT
T ss_pred             ----e--ChHHHHHHHHHHhc
Confidence                2  45667777776543

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=96.87  E-value=0.0035  Score=49.54  Aligned_cols=39  Identities=28%  Similarity=0.554  Sum_probs=31.4

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEE
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA  216 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~  216 (313)
                      .++++|.|+.-.|++|..+.+.+..+.+.+.....+.+.
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~   59 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKN   59 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEE
Confidence            578999999999999999999999998887663333333

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=96.86  E-value=0.0029  Score=49.05  Aligned_cols=90  Identities=9%  Similarity=-0.017  Sum_probs=62.1

Q ss_pred             CCccEEEEEe-eC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc------------------cccchhhhhCCCC--
Q 021368           49 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGITG--  105 (313)
Q Consensus        49 ~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~------------------~~~~l~~~~~v~~--  105 (313)
                      ++..+|.||. .| +.|....+.+.++..+|++. +.++.|.++...                  ....+.+.||+..  
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            4466777887 88 99999999999999999853 777777776321                  1346677788865  


Q ss_pred             ----------CCCcEEEEEcCCCCceeccCCC---CCHHHHHHHHHHH
Q 021368          106 ----------EAPKVLAYTGNDDAKKHILDGE---LTLDKIKTFGEDF  140 (313)
Q Consensus       106 ----------~~~P~i~~~~~~~~~~~~~~g~---~~~~~i~~fi~~~  140 (313)
                                .  |+.++++.++...+.+.+.   ...+++.+.+.+.
T Consensus       115 ~~~~~~~~~~~--p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          115 NMYGKQVLGIE--RSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EETTEEEEEEC--CEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccccccCcc--eEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                      5  8888887766444444432   3345666666554

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=96.83  E-value=0.00066  Score=53.12  Aligned_cols=86  Identities=12%  Similarity=0.074  Sum_probs=54.3

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------------------ccCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------------------~~~~v  230 (313)
                      .+++++|+|| +.||++|...++.+.++..+    .++.+..+..+....                         ..|++
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  120 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK----EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGV  120 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT----TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTC
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc----CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCC
Confidence            4678999998 78999999999999888766    246666666554211                         12344


Q ss_pred             Cc------CceEEEEeC-CCCCcCce--eeccCcCHHHHHHHHHh
Q 021368          231 DG------FPTILFFPA-GNKSFDPI--NVDVDRTVVALYKFLKK  266 (313)
Q Consensus       231 ~~------~P~i~~~~~-g~~~~~~~--~y~g~~~~~~l~~fi~~  266 (313)
                      ..      .|+.+++.. |..+....  ...+..+.+.+++.|++
T Consensus       121 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          121 VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            43      788888854 44321000  01124567788887764

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=96.81  E-value=0.0013  Score=55.36  Aligned_cols=45  Identities=9%  Similarity=0.168  Sum_probs=38.7

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+++++|+|| +.||+.|...++.+.++..+|++. ++.+..|.++.
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~-gv~vv~IS~D~  135 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDS  135 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEcCCC
Confidence            3678999999 999999999999999999999764 57888787765

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.77  E-value=0.0015  Score=47.27  Aligned_cols=64  Identities=11%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             cChHHHhhcCCCcEEEEEeC-----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceE
Q 021368          168 NNFDEIVLDESKDVLLEIYA-----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTI  236 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~-----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i  236 (313)
                      +.+++.+.  ... ++.|+.     +||++|..+...|...        ++.+..+|++.+..      ...+..++|.+
T Consensus         6 ~~~~~~i~--~~~-vvvy~~g~~~~~~Cp~C~~ak~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i   74 (109)
T 1wik_A            6 SGLKVLTN--KAS-VMLFMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             CCHHHHHT--TSS-EEEEESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHhc--cCC-EEEEEecCCCCCCCchHHHHHHHHHHc--------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence            45666663  233 445666     9999999999888765        35677888887643      23466789985


Q ss_pred             EEEeCCCC
Q 021368          237 LFFPAGNK  244 (313)
Q Consensus       237 ~~~~~g~~  244 (313)
                        |.+|..
T Consensus        75 --fi~g~~   80 (109)
T 1wik_A           75 --YVRGDL   80 (109)
T ss_dssp             --ECSSSE
T ss_pred             --EECCEE
Confidence              446554

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=96.76  E-value=0.0017  Score=51.32  Aligned_cols=45  Identities=13%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCCcEEE-EEeCCCCccch-hhhHHHHHHHHHhcCCCcEEEEE-EeCCC
Q 021368          177 ESKDVLL-EIYAPWCGHCQ-AFEPTYNKLAKHLRGVDSIVIAK-MDGTT  222 (313)
Q Consensus       177 ~~k~~lv-~fy~~~C~~C~-~~~~~~~~la~~~~~~~~v~~~~-vd~~~  222 (313)
                      .+++++| +||++||+.|. ..++.|.++..+|+.. ++.+.. +..+.
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~-gv~vv~~iS~D~   89 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK-GVQVVACLSVND   89 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESSC
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Confidence            3565555 45599999999 5889999999999764 344442 55544

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.63  E-value=0.0021  Score=53.66  Aligned_cols=86  Identities=8%  Similarity=0.037  Sum_probs=60.0

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCC---------------------------------------
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN---------------------------------------   90 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~---------------------------------------   90 (313)
                      ..++.|+.+| ++|+++.+.+.++...  ++|.|.++...-                                       
T Consensus        99 ~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~~  176 (241)
T 1v58_A           99 VIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN  176 (241)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcccc
Confidence            3466688888 9999999999987775  567777665410                                       


Q ss_pred             ----c----ccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368           91 ----E----DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus        91 ----~----~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                          .    ..+..+++.+||+++  |++++.++++ ....+.|..+.+.|.+++.+.+
T Consensus       177 ~~~~~~~~v~~~~~l~~~~gv~gt--Pt~vi~~~~G-~~~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          177 VSTEQMKVLSDNEKLMDDLGANVT--PAIYYMSKEN-TLQQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCCSS--CEEEEEETTT-EEEEEESSCCHHHHHHHTTC--
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCC--CEEEEECCCC-CEEEecCCCCHHHHHHHHHHHH
Confidence                0    013456788999999  9998876432 2234678889999999887654

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=96.54  E-value=0.00089  Score=53.75  Aligned_cols=43  Identities=19%  Similarity=0.367  Sum_probs=34.3

Q ss_pred             CCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .++++|.|++.||++|+.+.+.+   ..+...+.+  .+.|..++...
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~   59 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHVSL   59 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEechh
Confidence            36889999999999999999986   677777665  57777776654

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=96.53  E-value=0.011  Score=46.53  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=51.7

Q ss_pred             CCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-------------------cccchhhhhCCCCCC
Q 021368           49 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-------------------VGKPVSEYFGITGEA  107 (313)
Q Consensus        49 ~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-------------------~~~~l~~~~~v~~~~  107 (313)
                      ++..+|.||..|  +.|....|.|.+++.+ .+ +.|+.|+.+...                   ....+.+.||+....
T Consensus        44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~-v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  121 (175)
T 1xvq_A           44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA-SG-ATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD  121 (175)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TT-CEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cC-CEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence            456777899888  8999999999999998 54 888888876211                   024678889987542


Q ss_pred             -------CcEEEEEcCCCCceecc
Q 021368          108 -------PKVLAYTGNDDAKKHIL  124 (313)
Q Consensus       108 -------~P~i~~~~~~~~~~~~~  124 (313)
                             .|+.++++.++...+.+
T Consensus       122 ~~~~g~~~p~~~lid~~G~I~~~~  145 (175)
T 1xvq_A          122 GPMAGLLARAIVVIGADGNVAYTE  145 (175)
T ss_dssp             STTTTSBCSEEEEECTTSBEEEEE
T ss_pred             cccCCcccceEEEECCCCeEEEEE
Confidence                   16666666554444444

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=96.52  E-value=0.00049  Score=46.70  Aligned_cols=74  Identities=12%  Similarity=0.064  Sum_probs=48.7

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  131 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~  131 (313)
                      +++|+++| ++|+++.+.|.+.     + +.|..+|++..........++|+...  |++ +. ++.  .  . +..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~g~~~v--P~~-~~-~g~--~--~-~g~~~~   67 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-----G-FDFEMINVDRVPEAAEALRAQGFRQL--PVV-IA-GDL--S--W-SGFRPD   67 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----T-CCCEEEETTTCHHHHHHHHHTTCCSS--CEE-EE-TTE--E--E-ESCCHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-----C-CCeEEEECCCCHHHHHHHHHhCCCcc--CEE-EE-CCE--E--E-ecCCHH
Confidence            56788899 9999999998864     3 66788999873212233345899988  998 44 332  1  1 235677


Q ss_pred             HHHHHHHHHh
Q 021368          132 KIKTFGEDFL  141 (313)
Q Consensus       132 ~i~~fi~~~~  141 (313)
                      .|.+++.+.+
T Consensus        68 ~l~~~l~~~~   77 (81)
T 1h75_A           68 MINRLHPAPH   77 (81)
T ss_dssp             HHGGGSCCC-
T ss_pred             HHHHHHhccc
Confidence            7766665543

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=96.42  E-value=0.022  Score=46.57  Aligned_cols=42  Identities=10%  Similarity=0.051  Sum_probs=35.1

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN   90 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~   90 (313)
                      .++.++|.|++.| +.|. -.|.|.++..+|.+. +.|+.|.|+.
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~   98 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQ   98 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccc
Confidence            4557778899999 9998 899999999999864 8899998763

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=96.39  E-value=0.0037  Score=41.34  Aligned_cols=70  Identities=14%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD  131 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~  131 (313)
                      +++|+++| ++|+++.+.++++     + +.|..+|.+.........+.+|+...  |++.+  ++.  .  . +..+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~-i~~~~~di~~~~~~~~~~~~~~~~~v--P~l~~--~g~--~--~-~g~~~~   67 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-----G-LAYNTVDISLDDEARDYVMALGYVQA--PVVEV--DGE--H--W-SGFRPE   67 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----T-CCCEEEETTTCHHHHHHHHHTTCBCC--CEEEE--TTE--E--E-ESCCHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHcCCCcc--CEEEE--CCe--E--E-cCCCHH
Confidence            56688889 9999999998875     3 67788898873211222247899888  99863  332  1  2 345778


Q ss_pred             HHHHHH
Q 021368          132 KIKTFG  137 (313)
Q Consensus       132 ~i~~fi  137 (313)
                      .|.+++
T Consensus        68 ~l~~~l   73 (75)
T 1r7h_A           68 RIKQLQ   73 (75)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887776

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=96.32  E-value=0.011  Score=48.47  Aligned_cols=94  Identities=12%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhh
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~   99 (313)
                      .++..+|.|| +.| +.|....|.|.++..+|.+ .+.|+.|.++...                         ....+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            3456777899 999 9999999999999999963 3778887765411                         0124556


Q ss_pred             hhCCC---CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHHh
Q 021368          100 YFGIT---GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  141 (313)
Q Consensus       100 ~~~v~---~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~  141 (313)
                      .||+.   +...|+.++++.++...+.+.|    ..+.+++.+.+....
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            77773   1123888888766544444333    357888988888765

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=96.27  E-value=0.0069  Score=48.37  Aligned_cols=40  Identities=13%  Similarity=0.098  Sum_probs=33.8

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM   88 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~   88 (313)
                      ....++.|+..| ++|..+.|.+.++..++.+++.|..+..
T Consensus        25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            335577799999 9999999999999999998888886665

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=96.25  E-value=0.0043  Score=52.00  Aligned_cols=86  Identities=10%  Similarity=0.008  Sum_probs=63.4

Q ss_pred             EEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc------------------------cccchhhhhCCC----
Q 021368           55 LLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGIT----  104 (313)
Q Consensus        55 ~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~v~----  104 (313)
                      .|+++| +.|....+.|.+++.+|.+ .+.|+.|.++...                        ....+++.|||.    
T Consensus        40 ~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~  119 (249)
T 3a2v_A           40 SHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAES  119 (249)
T ss_dssp             CCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTC
T ss_pred             EEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccC
Confidence            356788 9999999999999999985 3888888886521                        134688899997    


Q ss_pred             ---CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHHhc
Q 021368          105 ---GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ---~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~~  142 (313)
                         ..  |++++++.++...+.+.|    .++.++|.+.|..+..
T Consensus       120 g~~~~--p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq~  162 (249)
T 3a2v_A          120 ATHTV--RGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKL  162 (249)
T ss_dssp             SSSCC--EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             CCccc--ceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHHh
Confidence               55  988888766544333322    3678999999887653

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=96.21  E-value=0.0037  Score=45.62  Aligned_cols=53  Identities=9%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------ccCCCCcCceEEEEeCCCC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------~~~~v~~~P~i~~~~~g~~  244 (313)
                      ++.|+++||++|..+...+.++        ++.+..+|++....         ...+..++|++++  +|..
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~--------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~g~~   80 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL--------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--NKVH   80 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--TTEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc--------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--CCEE
Confidence            5559999999999999888875        24455566664211         2346778999876  5554

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=96.20  E-value=0.029  Score=45.51  Aligned_cols=41  Identities=5%  Similarity=-0.084  Sum_probs=34.3

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD   89 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~   89 (313)
                      .++.++|.|++.| +.| ...|.|.++..+|.+. +.|+.|.|+
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            4457788899999 999 6789999999999864 888888875

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=96.19  E-value=0.0035  Score=44.74  Aligned_cols=63  Identities=6%  Similarity=0.005  Sum_probs=44.4

Q ss_pred             cccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccc----ccchhhhhCCCCCCCcEEE
Q 021368           43 PSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV----GKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        43 ~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~----~~~l~~~~~v~~~~~P~i~  112 (313)
                      ++++..  ..+++|+++| ++|+++.+.|.+++..+.+   |..+|++....    ...+.+.+|+...  |+++
T Consensus         6 ~~~i~~--~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~v--P~i~   73 (105)
T 1kte_A            6 NSKIQP--GKVVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTV--PRVF   73 (105)
T ss_dssp             HHHCCT--TCEEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCS--CEEE
T ss_pred             Hhhccc--CCEEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCc--CeEE
Confidence            344443  3577789999 9999999999988777654   55566655210    1257788999988  9983

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=96.12  E-value=0.0066  Score=50.05  Aligned_cols=88  Identities=11%  Similarity=0.043  Sum_probs=58.8

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------------c
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------------H  226 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------------~  226 (313)
                      .+|++|+++||+.|....+.+.++..+|+.. ++.+..+.++....                                 .
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~  112 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAI  112 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHH
Confidence            4566678999999999999999999999764 57777777664211                                 1


Q ss_pred             cCCCC------------cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhcC
Q 021368          227 RAKSD------------GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKNA  268 (313)
Q Consensus       227 ~~~v~------------~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~~  268 (313)
                      .|++.            .+|+++++.....+.....+.  ..++.++|++.|....
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            23442            368999995544431111111  1357888998887764

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=96.11  E-value=0.013  Score=45.11  Aligned_cols=76  Identities=9%  Similarity=0.029  Sum_probs=49.3

Q ss_pred             cEEEEE-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc------------------cccchhhhhCCCCCCCc--
Q 021368           52 NQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------------------VGKPVSEYFGITGEAPK--  109 (313)
Q Consensus        52 ~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~------------------~~~~l~~~~~v~~~~~P--  109 (313)
                      .++.|| +.| +.|....|.|.++..+|.+.-.|+.|.++...                  ....+++.||+...  |  
T Consensus        38 vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~--p~~  115 (159)
T 2a4v_A           38 VVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKT--PLS  115 (159)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSS--SSS
T ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc--ccC
Confidence            445566 788 99999999999999999852266666654311                  13467888999877  5  


Q ss_pred             -----EEEEEcCCCCceeccCCCCCHH
Q 021368          110 -----VLAYTGNDDAKKHILDGELTLD  131 (313)
Q Consensus       110 -----~i~~~~~~~~~~~~~~g~~~~~  131 (313)
                           ++++ ..| ...+.+.|.....
T Consensus       116 g~~~~~~li-~~G-~i~~~~~g~~~~~  140 (159)
T 2a4v_A          116 GSIRSHFIF-VDG-KLKFKRVKISPEV  140 (159)
T ss_dssp             CBCCEEEEE-ETT-EEEEEEESCCHHH
T ss_pred             CccceEEEE-cCC-EEEEEEccCCccc
Confidence                 5544 444 3444455544433

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=96.10  E-value=0.014  Score=46.07  Aligned_cols=92  Identities=10%  Similarity=-0.017  Sum_probs=59.6

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc------------------cccchhhhhCCCCC-
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGITGE-  106 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~------------------~~~~l~~~~~v~~~-  106 (313)
                      ++..+|.|| +.| +.|....+.|.++..+|.+. +.++.|.++...                  ....+++.||+... 
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~  130 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK  130 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence            345666677 888 89999999999999999863 777777766422                  13456677777531 


Q ss_pred             ---------CCcEEEEEcCCCCceeccCC---CCCHHHHHHHHHHH
Q 021368          107 ---------APKVLAYTGNDDAKKHILDG---ELTLDKIKTFGEDF  140 (313)
Q Consensus       107 ---------~~P~i~~~~~~~~~~~~~~g---~~~~~~i~~fi~~~  140 (313)
                               ..|+.++++.++...+.+.+   ....+++.+.++..
T Consensus       131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                     12667777766544444433   23455666666554

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.09  E-value=0.0028  Score=50.60  Aligned_cols=40  Identities=30%  Similarity=0.504  Sum_probs=34.0

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      +++++|.|++.||++|..+.+.+.++.+.+ +   +.|..+.+.
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~---v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-G---TDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-T---SCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-C---CeEEEEecc
Confidence            578999999999999999999999999988 3   556666654

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=96.09  E-value=0.0047  Score=51.28  Aligned_cols=89  Identities=6%  Similarity=-0.042  Sum_probs=60.0

Q ss_pred             CcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------------------------c
Q 021368          179 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------------H  226 (313)
Q Consensus       179 k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------------------------~  226 (313)
                      +.++|+|| ++||+.|....+.+.++..+|+.. ++.+..+.++....                               .
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~-~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~  108 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR-GVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAV  108 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHH
Confidence            47888898 899999999999999999988753 57777777654210                               1


Q ss_pred             cCCCC------------cCceEEEEeCCCCCcCceeecc--CcCHHHHHHHHHhcC
Q 021368          227 RAKSD------------GFPTILFFPAGNKSFDPINVDV--DRTVVALYKFLKKNA  268 (313)
Q Consensus       227 ~~~v~------------~~P~i~~~~~g~~~~~~~~y~g--~~~~~~l~~fi~~~~  268 (313)
                      .|++.            .+|+++++.....+.....+..  .++.++|++.|....
T Consensus       109 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          109 KLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            23442            4689988855444311111211  357888998887653

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=95.99  E-value=0.015  Score=46.47  Aligned_cols=41  Identities=20%  Similarity=0.249  Sum_probs=35.9

Q ss_pred             CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD   89 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~   89 (313)
                      ....++.|+..| ++|..+.|.+.++..++.+++.|..++..
T Consensus        25 ~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           25 GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            345677899999 99999999999999999988999998875

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=95.94  E-value=0.018  Score=46.80  Aligned_cols=93  Identities=12%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++..+|.|| +.| +.|....|.|.++..+|.. .+.|+.|.++...                         ....+++.
T Consensus        48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  127 (211)
T 2pn8_A           48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD  127 (211)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHH
Confidence            456777788 999 9999999999999999964 4778888765421                         01345567


Q ss_pred             hCCC----CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHHh
Q 021368          101 FGIT----GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDFL  141 (313)
Q Consensus       101 ~~v~----~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~  141 (313)
                      ||+.    +...|+.++++.++...+.+.|    ..+.+++.+.+..+.
T Consensus       128 ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          128 YGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             cCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            7774    1123888888766544444323    257788888888765

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=95.88  E-value=0.0026  Score=47.62  Aligned_cols=56  Identities=11%  Similarity=0.231  Sum_probs=36.1

Q ss_pred             EEEEeCCCCccchhh-hHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c-ccCCCCcCceEEEEeCCCC
Q 021368          182 LLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H-HRAKSDGFPTILFFPAGNK  244 (313)
Q Consensus       182 lv~fy~~~C~~C~~~-~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~-~~~~v~~~P~i~~~~~g~~  244 (313)
                      +++|+++||++|..+ .+.+..+..     ..+.+..+|++...        . ..++..++|++++  +|..
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~-----~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi--~g~~  104 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNV-----PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYI--NGKH  104 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--TTEE
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCc-----cCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEE--CCEE
Confidence            678999999999988 777765531     01344445555432        1 3467889999743  5554

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=95.84  E-value=0.018  Score=45.70  Aligned_cols=94  Identities=9%  Similarity=-0.071  Sum_probs=63.0

Q ss_pred             CCccEEEEEe-eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCccc----------------------ccchhhhhCC
Q 021368           49 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV----------------------GKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~----------------------~~~l~~~~~v  103 (313)
                      ++..+|.||. .| +.|....|.|.++..+|.+ .+.|+.|.++....                      ...+++.||+
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv  109 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence            4466677885 78 9999999999999999874 47788877654210                      1234556666


Q ss_pred             C----CCCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHHhc
Q 021368          104 T----GEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLE  142 (313)
Q Consensus       104 ~----~~~~P~i~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~~~  142 (313)
                      .    ++..|+.++++.++...+.+.|.    .+.+++.+.+..+..
T Consensus       110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A          110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            5    21238887887665444444332    368888888887653

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=95.73  E-value=0.022  Score=47.43  Aligned_cols=91  Identities=11%  Similarity=0.138  Sum_probs=63.4

Q ss_pred             CCCccEEEEEe-eC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhh
Q 021368           48 SPIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~   99 (313)
                      .++..+|.||. .| +.|....+.|.+++.+|++ .+.++.|.++...                         ....+++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            34466777888 88 9999999999999999975 3778888776421                         0235667


Q ss_pred             hhCCC------CCCCcEEEEEcCCCCceeccCC----CCCHHHHHHHHHHH
Q 021368          100 YFGIT------GEAPKVLAYTGNDDAKKHILDG----ELTLDKIKTFGEDF  140 (313)
Q Consensus       100 ~~~v~------~~~~P~i~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~  140 (313)
                      .||+.      ..  |+.++++.++...+.+.+    ..+.+++.+.+...
T Consensus       156 ~ygv~~~~~g~~~--p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTL--RGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEEC--EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCcc--ceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78886      34  888788766544333222    45678888887665

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=95.72  E-value=0.0072  Score=49.65  Aligned_cols=88  Identities=11%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------ccCC
Q 021368          180 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------HRAK  229 (313)
Q Consensus       180 ~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------~~~~  229 (313)
                      .++++|+++||+.|....+.+.++..+|+.. ++.+..+.++....                              ..|+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~yg  112 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLK  112 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHT
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhC
Confidence            4455568999999999999999999999764 57777777764211                              1124


Q ss_pred             CC------------cCceEEEEeCCCCCcCceeec--cCcCHHHHHHHHHhcC
Q 021368          230 SD------------GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKNA  268 (313)
Q Consensus       230 v~------------~~P~i~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~~  268 (313)
                      +.            ..|+++++.....+.....+.  ..++.++|++.|....
T Consensus       113 v~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          113 IMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             CEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            31            368999885544431111221  2468888988887754

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=95.64  E-value=0.028  Score=43.55  Aligned_cols=89  Identities=12%  Similarity=0.079  Sum_probs=54.7

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccccc--------------------chhhhhCCCCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK--------------------PVSEYFGITGE  106 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~--------------------~l~~~~~v~~~  106 (313)
                      ++..+|.|| +.| +.|....+.|.++..+ .+ +.++.|.++......                    .+.+.||+...
T Consensus        46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~-~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~  123 (166)
T 3p7x_A           46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK-EE-GIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVME  123 (166)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TT-SEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEET
T ss_pred             CCcEEEEEECCCCCCccHHHHHHHHHHhhc-CC-CEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccc
Confidence            446677777 678 8999999999999888 55 777777765432122                    34445555430


Q ss_pred             ----CCcEEEEEcCCCCceec-----cCCCCCHHHHHHHHHH
Q 021368          107 ----APKVLAYTGNDDAKKHI-----LDGELTLDKIKTFGED  139 (313)
Q Consensus       107 ----~~P~i~~~~~~~~~~~~-----~~g~~~~~~i~~fi~~  139 (313)
                          ..|+.++++.++...+.     ..+..+.+.+.+.+.+
T Consensus       124 ~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          124 ELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             TTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             cCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                13777677655433333     2234566777766653

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=95.63  E-value=0.05  Score=42.41  Aligned_cols=94  Identities=7%  Similarity=-0.066  Sum_probs=63.7

Q ss_pred             CCccEEEEEeeC-C-chhhhhHHHHHHHHhcc---CeEEEEEEeCCCcc----------------------------ccc
Q 021368           49 PIKNQLLLFAVS-N-DSEKLLPVFEEAAKSFK---GKLIFVYVQMDNED----------------------------VGK   95 (313)
Q Consensus        49 ~~~~~v~f~~~~-~-~c~~~~~~~~~~a~~~~---~~v~f~~vd~~~~~----------------------------~~~   95 (313)
                      ++.++|.|+..| + .|....+.+.++..++.   ..+.++.|.++..+                            ...
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            557788899999 5 59999999999999995   34777777665200                            012


Q ss_pred             chhhhhCCCC-------CCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHHHHhc
Q 021368           96 PVSEYFGITG-------EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLE  142 (313)
Q Consensus        96 ~l~~~~~v~~-------~~~P~i~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~~~  142 (313)
                      .+++.||+..       .+.|++++++.++.....+.| ..+.++|.+.+.+.+.
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~  162 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARG  162 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhc
Confidence            4555555432       134777777766544444445 4789999999998765

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=95.62  E-value=0.013  Score=45.50  Aligned_cols=57  Identities=14%  Similarity=0.181  Sum_probs=42.0

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ++..+|.|| +.| +.|....|.|.++..+| ..+.|+.|..+.......+++++++..+
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~  101 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENA  101 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTE
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCce
Confidence            445667787 788 99999999999999999 5588888888753323455666666334

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=95.60  E-value=0.012  Score=45.50  Aligned_cols=92  Identities=12%  Similarity=0.136  Sum_probs=52.3

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCccc------------------ccchhhhhCCCC-
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV------------------GKPVSEYFGITG-  105 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~------------------~~~l~~~~~v~~-  105 (313)
                      .++.+++.|| +.| +.|....|.+.++..++.+ .+.++.|..+....                  ...+++.|||.. 
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~  108 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE  108 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence            3446677787 889 9999999999999998886 36777777654321                  234555666531 


Q ss_pred             --------CCCcEEEEEcCCCCceecc-----CCCCCHHHHHHHHHH
Q 021368          106 --------EAPKVLAYTGNDDAKKHIL-----DGELTLDKIKTFGED  139 (313)
Q Consensus       106 --------~~~P~i~~~~~~~~~~~~~-----~g~~~~~~i~~fi~~  139 (313)
                              ...|+.++++.++...+.+     .+..+.+++.+.+..
T Consensus       109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A          109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                    0125555666554333322     345677888887764

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=95.57  E-value=0.022  Score=44.60  Aligned_cols=45  Identities=9%  Similarity=0.040  Sum_probs=35.0

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~  221 (313)
                      +.+..++.|+..+|++|..+.+.+..+...+.....+.+...+..
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            356789999999999999999999998888722225777766654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=95.54  E-value=0.0061  Score=44.36  Aligned_cols=58  Identities=7%  Similarity=0.084  Sum_probs=41.9

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc----cccchhhhhCCCCCCCcEEEE
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED----VGKPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~----~~~~l~~~~~v~~~~~P~i~~  113 (313)
                      ..+++|+++| +.|+++.+.|.+++... +.  |..+|++...    ....+.+.+|+.+.  |++++
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~v--P~v~i   81 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTV--PRIFF   81 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSS--CEEEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCc--CEEEE
Confidence            4577888999 99999999998765442 22  7778887631    01367889999988  98743

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=95.54  E-value=0.031  Score=46.93  Aligned_cols=93  Identities=11%  Similarity=0.101  Sum_probs=62.5

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhh
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~   99 (313)
                      .++..+|.|| +.| +.|....+.|.+++.+|++ .+.|+.|.++...                         ....+++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            3445667787 788 9999999999999999975 3778888776421                         0235667


Q ss_pred             hhCCCC----CCCcEEEEEcCCCCceeccC----CCCCHHHHHHHHHHH
Q 021368          100 YFGITG----EAPKVLAYTGNDDAKKHILD----GELTLDKIKTFGEDF  140 (313)
Q Consensus       100 ~~~v~~----~~~P~i~~~~~~~~~~~~~~----g~~~~~~i~~fi~~~  140 (313)
                      .||+..    ...|++++++.++...+.+.    ..++.+++.+.+...
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            777752    11377778876654433332    246678888877654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=95.43  E-value=0.019  Score=45.71  Aligned_cols=41  Identities=17%  Similarity=0.361  Sum_probs=34.5

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG  220 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~  220 (313)
                      .+.+++.|+..+|++|..+.+.+.++...+..  .+.+..+..
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   65 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPA   65 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEEC
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCc
Confidence            46689999999999999999999999887764  577776665

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=95.43  E-value=0.04  Score=38.40  Aligned_cols=77  Identities=6%  Similarity=0.043  Sum_probs=51.2

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhh--CCCCCCCcEEEEEcCCCCceeccCCCC
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYF--GITGEAPKVLAYTGNDDAKKHILDGEL  128 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~--~v~~~~~P~i~~~~~~~~~~~~~~g~~  128 (313)
                      .+++|..+| +.|.+....|.+.     + +.|..+|.+......+...+.  |.+..  |+|++ ..+.  .   -+..
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~-----g-i~y~~idi~~d~~~~~~~~~~~~G~~tV--P~I~i-~Dg~--~---l~~~   70 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN-----R-IAYDEVDIEHNRAAAEFVGSVNGGNRTV--PTVKF-ADGS--T---LTNP   70 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT-----T-CCCEEEETTTCHHHHHHHHHHSSSSSCS--CEEEE-TTSC--E---EESC
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc-----C-CceEEEEcCCCHHHHHHHHHHcCCCCEe--CEEEE-eCCE--E---EeCC
Confidence            455666777 9999999998863     3 667788988743222333332  67777  99854 3332  1   1246


Q ss_pred             CHHHHHHHHHHHhc
Q 021368          129 TLDKIKTFGEDFLE  142 (313)
Q Consensus       129 ~~~~i~~fi~~~~~  142 (313)
                      +.++|.+++.+..+
T Consensus        71 ~~~el~~~L~el~g   84 (92)
T 2lqo_A           71 SADEVKAKLVKIAG   84 (92)
T ss_dssp             CHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhcC
Confidence            88999999998765

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=95.15  E-value=0.0054  Score=49.50  Aligned_cols=42  Identities=10%  Similarity=0.108  Sum_probs=38.0

Q ss_pred             CCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCC
Q 021368           49 PIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDN   90 (313)
Q Consensus        49 ~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~   90 (313)
                      ....+|.||+.| ++|+.+.|.|   .++++++.+++.|..++.+.
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~  158 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCc
Confidence            446788899999 9999999999   99999999889999999875

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.05  E-value=0.031  Score=40.36  Aligned_cols=50  Identities=18%  Similarity=0.109  Sum_probs=34.7

Q ss_pred             EEEEEeCCCCccch------hhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccC--------CCCcCceEEE
Q 021368          181 VLLEIYAPWCGHCQ------AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRA--------KSDGFPTILF  238 (313)
Q Consensus       181 ~lv~fy~~~C~~C~------~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~--------~v~~~P~i~~  238 (313)
                      .++.|+.++|+.|.      .+...|...        ++.+..+|++.+..      ..+        +...+|.+++
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~--------gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi   78 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEAN--------KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFN   78 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEE
Confidence            46778999999998      566655542        46677888887643      232        5567898765

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=95.04  E-value=0.091  Score=41.72  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=31.9

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM   88 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~   88 (313)
                      ..++.|+..+ ++|..+.+.+.++..++.+.+.|..+..
T Consensus        24 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           24 IEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             EEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             cEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            4566788888 9999999999999999987777777764

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=95.04  E-value=0.034  Score=44.79  Aligned_cols=57  Identities=11%  Similarity=0.145  Sum_probs=42.6

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ++..+|.|| +.| +.|....+.|.++..+|.+ +.|+.|.++......++++++++..+
T Consensus        78 Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~-v~vv~Is~D~~~~~~~~~~~~~~~~f  136 (200)
T 3zrd_A           78 GKRKVLNIFPSIDTGVCAASVRKFNQLAGELEN-TVVLCISSDLPFAQSRFCGAEGLSNV  136 (200)
T ss_dssp             TSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTT-EEEEEEESSCHHHHTTCTTTTTCTTE
T ss_pred             CCcEEEEEECCCCCchhHHHHHHHHHHHHHhCC-CEEEEEECCCHHHHHHHHHHcCCCCc
Confidence            445667787 678 9999999999999999944 88888888764324456666666444

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.04  E-value=0.025  Score=42.19  Aligned_cols=53  Identities=11%  Similarity=0.132  Sum_probs=39.1

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccccc----chhhhhCCCCCCCcEEE
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK----PVSEYFGITGEAPKVLA  112 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~----~l~~~~~v~~~~~P~i~  112 (313)
                      .+++|+.+| ++|+++.+.|.++.      +.|..+|++....++    .+.+.+|+..+  |+++
T Consensus        28 ~vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~v--P~l~   85 (130)
T 2cq9_A           28 CVVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIF   85 (130)
T ss_dssp             SEEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCS--SEEE
T ss_pred             cEEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCc--CEEE
Confidence            466688999 99999999999874      345667776531012    37788999988  9984

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=95.02  E-value=0.024  Score=44.19  Aligned_cols=57  Identities=18%  Similarity=0.153  Sum_probs=43.3

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ++..+|.|| +.| +.|....+.+.++..+| ..+.|+.|.++.......+++++++..+
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~  105 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQNV  105 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCCSS
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCCCe
Confidence            445666677 688 99999999999999999 5588999988764324556777777545

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=94.98  E-value=0.0064  Score=47.41  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             ccCCCccEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCccc------------------ccchhhhhCCC
Q 021368           46 FESPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDV------------------GKPVSEYFGIT  104 (313)
Q Consensus        46 ~~~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~------------------~~~l~~~~~v~  104 (313)
                      ..+++..++.|| +.| +.|....+.|.++..+|++. +.++.|..+....                  ...+++.|||.
T Consensus        30 ~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~  109 (164)
T 4gqc_A           30 LKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVY  109 (164)
T ss_dssp             HHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred             hcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCc
Confidence            335556777787 889 99999999999999998863 7777777654221                  23556666663


Q ss_pred             C--------CCCcEEEEEcCCCCceecc-----CCCCCHHHHHHHHHHHhc
Q 021368          105 G--------EAPKVLAYTGNDDAKKHIL-----DGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ~--------~~~P~i~~~~~~~~~~~~~-----~g~~~~~~i~~fi~~~~~  142 (313)
                      .        ...|+.++++.++...+.+     .+..+.+++.+.+.+..+
T Consensus       110 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          110 HEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             ccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence            1        1125566666655433332     234578888888877643

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=94.97  E-value=0.024  Score=43.79  Aligned_cols=61  Identities=16%  Similarity=0.128  Sum_probs=45.1

Q ss_pred             CCCccEEEEEe-eC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           48 SPIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        48 ~~~~~~v~f~~-~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      .++..+|.||. .| +.|....|.|.++..+| ..+.|+.|.++.......+++++++..+  |.+
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~--~~l  103 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNA--IML  103 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTS--EEE
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCc--EEe
Confidence            34466677874 88 89999999999999999 5588999988764324556777787445  643

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=94.95  E-value=0.025  Score=39.37  Aligned_cols=49  Identities=14%  Similarity=0.043  Sum_probs=34.6

Q ss_pred             EEEEeCCCCccc------hhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCC--CCcCceEEE
Q 021368          182 LLEIYAPWCGHC------QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAK--SDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C------~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~--v~~~P~i~~  238 (313)
                      ++.|++++|+.|      ..+...+...        ++.+..+|++.+..      ...+  ...+|.+++
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi   66 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN   66 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence            667899999999      6776666543        46677788876633      2345  568898865

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=94.58  E-value=0.029  Score=38.46  Aligned_cols=52  Identities=4%  Similarity=0.069  Sum_probs=39.8

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhh-CCCCCCCcEEE
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYF-GITGEAPKVLA  112 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~-~v~~~~~P~i~  112 (313)
                      .+++|+++| +.|+++.+.|.+..      +.|..+|.+ ......+.+.+ |+...  |+++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~-~~~~~~l~~~~~~~~~v--P~l~   60 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDAS-TSLRQEMVQRANGRNTF--PQIF   60 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSC-HHHHHHHHHHHHSSCCS--CEEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECC-HHHHHHHHHHhCCCCCc--CEEE
Confidence            466788889 99999999998763      556778887 21145788888 99888  9984

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=94.57  E-value=0.027  Score=38.57  Aligned_cols=49  Identities=10%  Similarity=0.150  Sum_probs=33.6

Q ss_pred             EEEEeCC----CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCC-----Cccc------ccCCCC-----cCceEEE
Q 021368          182 LLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----TNEH------HRAKSD-----GFPTILF  238 (313)
Q Consensus       182 lv~fy~~----~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-----~~~~------~~~~v~-----~~P~i~~  238 (313)
                      ++.|+.+    ||+.|..+...|.+.        ++.+-.+|++     .+..      ...+..     ++|.+++
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~--------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i   70 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK--------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA   70 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT--------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc--------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE
Confidence            5678899    999999998887774        3556667776     3322      233555     7898764

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=94.43  E-value=0.037  Score=38.16  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--cc----cchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VG----KPVSEYFGITGEAPKVLAYTGNDDAKKHI  123 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--~~----~~l~~~~~v~~~~~P~i~~~~~~~~~~~~  123 (313)
                      ..+++|..+| +.|+++...|.++.-.      +..+|.+..+  ..    ..+.+.+|+...  |++.+  ++.  .  
T Consensus        12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi~------~~~~~v~~~~~~~~~~~~~~l~~~~g~~~v--P~l~~--~g~--~--   77 (92)
T 3ic4_A           12 AEVLMYGLSTCPHCKRTLEFLKREGVD------FEVIWIDKLEGEERKKVIEKVHSISGSYSV--PVVVK--GDK--H--   77 (92)
T ss_dssp             SSSEEEECTTCHHHHHHHHHHHHHTCC------CEEEEGGGCCHHHHHHHHHHHHHHHSSSCS--CEEEE--TTE--E--
T ss_pred             ceEEEEECCCChHHHHHHHHHHHcCCC------cEEEEeeeCCccchHHHHHHHHHhcCCCCc--CEEEE--CCE--E--
Confidence            3466777888 9999999999887533      3445555210  02    466778899877  99865  231  1  


Q ss_pred             cCCCCCHHHHHHHHH
Q 021368          124 LDGELTLDKIKTFGE  138 (313)
Q Consensus       124 ~~g~~~~~~i~~fi~  138 (313)
                       -+..+.+.|.+++.
T Consensus        78 -i~G~~~~~l~~~l~   91 (92)
T 3ic4_A           78 -VLGYNEEKLKELIR   91 (92)
T ss_dssp             -EESCCHHHHHHHHH
T ss_pred             -EeCCCHHHHHHHhc
Confidence             23468899888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	3e-27
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	6e-22
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	3e-20
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	1e-18
d2b5ea3	125	c.47.1.2 (A:240-364) Protein disulfide isomerase,	8e-16
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	5e-15
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	2e-12
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	3e-12
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	1e-11
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	8e-11
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-10
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	9e-10
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-09
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	1e-09
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	7e-09
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-08
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-08
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	5e-08
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	2e-07
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	6e-07
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	7e-07
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	1e-06
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-06
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	1e-06
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	1e-06
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	1e-05
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	3e-05
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	3e-05
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	8e-05
d1bjxa_	110	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	1e-04
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	1e-04
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	2e-04
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	3e-04
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	5e-04
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	0.001
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	0.003

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score =  101 bits (253), Expect = 3e-27
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 31  LPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDN 90
            PL+     E       + I    +    + + ++L    +  A++ +G + F  +   +
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTI---D 61

Query: 91  EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL--DGELTLDKIKTFGEDFLEGKLKPF 148
                  +    +  +     A       +K     + E+T + IK F +DF+ GK++P 
Sbjct: 62  AKAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS 121

Query: 149 FKSDPIPETNDG 160
            KS+PIPE  +G
Sbjct: 122 IKSEPIPEKQEG 133

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.6 bits (216), Expect = 6e-22
 Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 2/128 (1%)

Query: 150 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 209
           KS  I E  D  V  +VG N DEIV D  KDVL+  YAPWCGHC+   PTY +LA     
Sbjct: 2   KSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN 61

Query: 210 VDS-IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
             S ++IAK+D T N+      +G+PTI+ +P G KS + +     R++ +L+ F+K+N 
Sbjct: 62  ATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENG 120

Query: 269 SIPFKIQK 276
                 + 
Sbjct: 121 HFDVDGKA 128

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 82.2 bits (202), Expect = 3e-20
 Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK- 217
           +G V +VV  N++EIVLD++KDVL+E YAPWCGHC+A  P Y +L       +       
Sbjct: 1   EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI 60

Query: 218 -MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
                T      +  GFPTI  +PAG K   P+     RTV  L KF+ +N  
Sbjct: 61  AKVDATANDVPDEIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGK 112

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 78.2 bits (192), Expect = 1e-18
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEHH 226
            +F++ V +     +++         +     +   +K        ++IA +        
Sbjct: 10  LSFEKTV-ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGEL 66

Query: 227 RAKS---------DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 270
             K+           FP+I  F      +  +   VD T+  L  F+  N  +
Sbjct: 67  ENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL 119

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.4 bits (172), Expect = 8e-16
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 15/123 (12%)

Query: 37  FTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKP 96
                     ES +    L +    + E+  P+F E AK  +G + FV +   +      
Sbjct: 5   IDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSI---DARKFGR 61

Query: 97  VSEYFGITGEAPKVLAYTGNDDAK------------KHILDGELTLDKIKTFGEDFLEGK 144
            +    +  + P    +   +D K            +      L    I++  +DFL+G 
Sbjct: 62  HAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD 121

Query: 145 LKP 147
             P
Sbjct: 122 ASP 124

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.1 bits (166), Expect = 5e-15
 Identities = 18/111 (16%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT------ 221
             F +++  +SK VL++    +    +     + +LA++    D +++A++  +      
Sbjct: 12  VTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKL 68

Query: 222 ---TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
               +E ++   + +P    F  G+   +P+       V A+ ++LK    
Sbjct: 69  NMELSEKYKLDKESYPVFYLFRDGDFE-NPVPYSGAVKVGAIQRWLKGQGV 118

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
            V  +    F+  VL   + VL+  +A WCG CQ   P  N  A        +V  ++D 
Sbjct: 3   GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP 62

Query: 221 TTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
                 + K +G P +               +   +   L  FL  +
Sbjct: 63  NPTTVKKYKVEGVPALRLVKGEQILDS---TEGVISKDKLLSFLDTH 106

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 59.8 bits (144), Expect = 3e-12
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 151 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 210
           SD I    D        ++FD  VL     +L++ +A WCG C+   P  +++A   +G 
Sbjct: 1   SDKIIHLTD--------DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52

Query: 211 DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
            ++    +D       +    G PT+L F  G  +   +      +   L +FL  N +
Sbjct: 53  LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA---LSKGQLKEFLDANLA 108

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 155 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 214
           PE  D  V ++  +NF E  L   K +L+E YAPWCGHC+A  P Y K A  L+   S +
Sbjct: 3   PEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60

Query: 215 -IAKMDGTTNEHHRAK--SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
            +AK+D T       +    G+PTI FF  G+ +  P      R    +  +LKK  
Sbjct: 61  RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKKRT 116

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 56.8 bits (136), Expect = 8e-11
 Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 15/128 (11%)

Query: 153 PIPE-TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH------CQAFEPTYNKLAK 205
             PE      V  V   N+   V  + + + L  + P           +  E      A+
Sbjct: 3   DFPEYDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQ 61

Query: 206 HLRGVDSIVIAKMDGTTNEHHRA--KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKF 263
            L     +    +D   +             +I  F       + I  D + +   L +F
Sbjct: 62  VLEDKG-VGFGLVDSEKDAAVAKKLGLTEEDSIYVFK----EDEVIEYDGEFSADTLVEF 116

Query: 264 LKKNASIP 271
           L      P
Sbjct: 117 LLDVLEDP 124

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
              V  + F  +VL+ S  VL++ +APWCG C+   P  +++A   +     V    D +
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

Query: 222 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
            N          PTI+ F  G K    I          + + ++K 
Sbjct: 63  PNVASEYGIRSIPTIMVFKGGKKCETIIGA---VPKATIVQTVEKY 105

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 53.2 bits (127), Expect = 9e-10
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 156 ETNDGDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 214
           E   G V  V  + F  IV     K V+L+++  WCG C+A  P Y KLA+    V  + 
Sbjct: 2   EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLK 61

Query: 215 IAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
           +                  PT       +   +      D     L + ++   S
Sbjct: 62  LDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD----KLLEAIQAARS 112

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 160 GDVKIVVG-NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 215
           G V ++     +D  +    +E K ++++  A WCG C+   P +  L+    G    + 
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61

Query: 216 AKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
             +D        A     PT   +  G K+ D +    D     L   + K+A+
Sbjct: 62  VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQD----KLKALVAKHAA 111

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 150 KSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 209
           + + +    D  V  +  ++F+E  +     VL E +APWCGHC+   P Y K A+ L  
Sbjct: 1   QQEAVAPE-DSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE 58

Query: 210 VDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
            +  +         +        GFP++  F   + + + I+ +  RT  A+ +F+ K +
Sbjct: 59  KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN-NSIDYEGPRTAEAIVQFMIKQS 117

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.8 bits (121), Expect = 7e-09
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 4/82 (4%)

Query: 162 VKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 220
            + V  +  D+ +       +LL                  +L +     D   +A  D 
Sbjct: 13  WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD-WQVAVADL 71

Query: 221 TTNE--HHRAKSDGFPTILFFP 240
             +E    R     FP  L F 
Sbjct: 72  EQSEAIGDRFNVRRFPATLVFT 93

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           V+ V  +++ E VL+    V+++ +APWCG C+   P  ++LAK   G  ++     D  
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 222 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
                +      PT+LFF  G +    I          L   ++K 
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGERKESIIGA---VPKSTLTDSIEKY 103

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 181 VLLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFF 239
           V +E+  +P C +C       ++  K       +    +     +         P I   
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

Query: 240 PAG 242
              
Sbjct: 63  GVV 65

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 163 KIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
            +  G   D+ +L E  + V++     W   C   +     +A+ ++    I +  +   
Sbjct: 6   HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV 65

Query: 222 TNEHHRAKSDGFPTILFFPAGNK 244
            + +   +     T++FF     
Sbjct: 66  PDFNKMYELYDPCTVMFFFRNKH 88

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTIL 237
           SK  +    +P C HC A +    ++A  +     +    +     +         PTI+
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 238 FFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
                             T  AL + +KK 
Sbjct: 62  INGDV-------EFIGAPTKEALVEAIKKR 84

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 14/168 (8%)

Query: 117 DDAKKHILDGELTLDKIKTFGEDFLE----GKLKPFFKSDPIPETNDGDVKIVVGNNFDE 172
           +   + +   E  L       E  L       ++   +            ++  G  F E
Sbjct: 53  ERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLE 112

Query: 173 IVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRAK 229
            +  E K   +++ IY      C A   +   LA        +   K+  +      R  
Sbjct: 113 TIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM---VKFCKIRASNTGAGDRFS 169

Query: 230 SDGFPTILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASIPFK 273
           SD  PT+L +  G    + I+V      D     +  FL +   +P +
Sbjct: 170 SDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLPER 217

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 4/78 (5%)

Query: 165 VVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 223
           V  +  D+ +       VLL                  +L +        V    D   +
Sbjct: 22  VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA-IADLEQS 80

Query: 224 E--HHRAKSDGFPTILFF 239
           E    R     FP  L F
Sbjct: 81  EAIGDRFGVFRFPATLVF 98

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 169 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 228
           +F++      K ++++  A WC  C+   P + +LAK    V   +   +D         
Sbjct: 18  HFEKGK-GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVT-FLKVDVDELKAVAEEW 75

Query: 229 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
             +  PT +F   G      ++  V      L   + K+A+
Sbjct: 76  NVEAMPTFIFLKDGK----LVDKTVGADKDGLPTLVAKHAT 112

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 33/97 (34%)

Query: 172 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD 231
           +        +++ I+  WCG C+A +P + +  +      + V+  ++          S 
Sbjct: 19  KEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 78

Query: 232 GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
               I      + S       ++      YK+   +A
Sbjct: 79  DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSA 115

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 156 ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 215
             N  D+++       E  LD+ +     I    C +C+ F  T + +    +     + 
Sbjct: 5   LDNIKDLEVTTVVRAQE-ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFIN 63

Query: 216 AKMDGTT----NEHHRAKSDGFPTILFFPAGN 243
           ++             R      P  +    G 
Sbjct: 64  SEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQ 95

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           VKIV      + ++ +++ V+++ +A WCG C+   P Y + +K    +   +   +D  
Sbjct: 2   VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV-FIKVDVDEV 60

Query: 222 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 268
           +    +      PT   +  G+     ++  +     AL + ++K A
Sbjct: 61  SEVTEKENITSMPTFKVYKNGS----SVDTLLGANDSALKQLIEKYA 103

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 162 VKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           VK V    +F   +    S+  +++     CG C    P ++            V  ++D
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFS---SMSNKYPQAVFLEVD 59

Query: 220 GTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
               +   A ++    PT  FF    +       D       L + +K++
Sbjct: 60  VHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAV----GLEEKIKQH 105

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 169 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 225
            ++E +    +    V+++  A WCG C+ F   +             +    D   +  
Sbjct: 16  TWNEQLQKANESKTLVVVDFTASWCGPCR-FIAPFFADLAKKLPNVLFLKVDTDELKSVA 74

Query: 226 HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
                   PT +F   G      +    D     L   + K+ +
Sbjct: 75  SDWAIQAMPTFMFLKEGKILDKVVGAKKD----ELQSTIAKHLA 114

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 2/104 (1%)

Query: 162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 221
           V +     F   ++ E    +    A WCG C+  E    K   +            D  
Sbjct: 11  VDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEK-IAYEFPTVKFAKVDADNN 68

Query: 222 TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 265
           +    + +    PT +   +G      I  +       L   +K
Sbjct: 69  SEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIK 112

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 8e-05
 Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 15/99 (15%)

Query: 161 DVKIVVGNNFDEIVLD-ESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDS 212
           +V +     F   V     K +              WC  C   EP   +  KH+     
Sbjct: 3   EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCV 62

Query: 213 IVIAKMDGTTNEHHRAKSD-------GFPTILFFPAGNK 244
            +  ++                      PT+L +    K
Sbjct: 63  FIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK 101

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 1   MVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 42
           + KK  E  + F +G+  K  + DF+  N+LPLV  FT + A
Sbjct: 70  LFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 110

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 168 NNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 226
            + D  +   S K V+L+ +A WCG C+   P   +L+        ++   +D   +   
Sbjct: 14  ADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAM 73

Query: 227 RAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 267
                  PT +F   G K  +    +       L   +K N
Sbjct: 74  EYNISSMPTFVFLKNGVKVEEFAGANAK----RLEDVIKAN 110

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 226
           G  +   VL + K VLL ++A WC   +A     N+L+     V  +             
Sbjct: 9   GQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWL 68

Query: 227 RAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEK 285
           +   + +   LF   G    D        T       +  N  I ++     +    E+
Sbjct: 69  KELGNPYALSLFDGDGMLGLDLGVYGAPET-----FLIDGNGIIRYRHAGDLNPRVWEE 122

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 162 VKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 219
           VK +      +  LD + D  V+++  A WCG C+  +P ++ L++        +   +D
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD 60

Query: 220 GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 266
              +     +    PT  FF  G K  +    + +     L   + +
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKE----KLEATINE 103

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 8/106 (7%)

Query: 169 NFDEIVLDESKDVLLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA----KMDGTTN 223
              + + +  +DV + +   P C +C       +K A          I     +      
Sbjct: 5   ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 64

Query: 224 EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 269
              +      P I+    G    +              + L    S
Sbjct: 65  WADQYNVMAVPKIVIQVNGEDRVEFEGA---YPEKMFLEKLLSALS 107

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 177 ESKDVLLEIYAPWCGHCQAFEPTY--NKLAKHLRGVDSIVIAKMDGTTNEHHRAKS---D 231
           ++K +++ I       CQ        N+  K++     I       +       +     
Sbjct: 41  QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLG 100

Query: 232 GFPTILFFPA--GNKSFDPINVDVDRTVVALYKFLKKNASIP 271
            FP +       G K  +   +DV   +  +  FL ++  + 
Sbjct: 101 DFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLD 142

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 9/80 (11%), Positives = 19/80 (23%), Gaps = 5/80 (6%)

Query: 167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 226
           G++ +    + +  VL       C  C   +               +    +    N   
Sbjct: 4   GSSGNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTW 59

Query: 227 RAKSDGFPTILFFPAGNKSF 246
             +   F   +F   G    
Sbjct: 60  -YERYKFDIPVFHLNGQFLM 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.91
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.87
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.86
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.86
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.86
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.86
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.86
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.84
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.83
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.78
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.77
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.77
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.76
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.76
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.75
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.75
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.75
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.73
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.73
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.7
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.7
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.7
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.7
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.69
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.69
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.69
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.67
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.67
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.66
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.66
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.66
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.65
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.65
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.64
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.63
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.62
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.62
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.59
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.59
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.54
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.53
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.52
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.51
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.49
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.49
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.48
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.48
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.46
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.46
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.46
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.46
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.45
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.44
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.43
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.42
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.39
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.39
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.39
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.33
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	99.25
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.23
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.13
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.11
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.11
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.05
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.02
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.96
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.93
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.92
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.91
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.88
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.87
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.79
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.77
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.75
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.7
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.69
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.67
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.66
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.48
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.48
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.47
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.4
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.39
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.27
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.26
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.23
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.22
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.22
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.07
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.03
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	97.83
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	97.74
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.64
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	97.63
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.49
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.47
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.44
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.42
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.4
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.33
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.32
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.29
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.23
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.22
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.03
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.02
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.99
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.97
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.91
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.89
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.81
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	96.8
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.69
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.66
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.62
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.53
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.52
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	96.5
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.41
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	96.32
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	96.21
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	95.96
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.92
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	95.83
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	95.76
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	95.74
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	95.68
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	95.64
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.57
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.56
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	95.47
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	95.38
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	95.31
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.14
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	95.13
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	94.59
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	94.1
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	93.99
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	93.98
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	93.86
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	93.8
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	93.69
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	93.61
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.55
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	93.53
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	93.5
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	93.44
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	93.3
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	93.29
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	92.82
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	92.44
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	92.29
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	91.95
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	91.95
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	91.63
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	91.49
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	91.26
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	90.93
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	90.49
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	90.42
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	90.12
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	90.06
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	90.05
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	89.98
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	89.35
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	88.09
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	87.13
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	86.06
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	86.0
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	85.59
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	85.44
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	84.1
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	82.11
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	81.7
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	81.3

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.8e-24  Score=166.66  Aligned_cols=124  Identities=40%  Similarity=0.746  Sum_probs=112.5

Q ss_pred             CCCCCCCCCCCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccccc
Q 021368          149 FKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHR  227 (313)
Q Consensus       149 ~~s~~~~~~~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~~~  227 (313)
                      ++|+++|+..++.|..|++++|++.+.+.+++++|+||++||++|+.+.|.|.++|..+++. ..+.++.+|+..+...+
T Consensus         1 ~~Se~ip~~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~   80 (140)
T d2b5ea1           1 VKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRG   80 (140)
T ss_dssp             CCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSS
T ss_pred             CCCCcCCccCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccc
Confidence            47899999999999999999999999888899999999999999999999999999998653 36889999999888899


Q ss_pred             CCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCcc
Q 021368          228 AKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       228 ~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  273 (313)
                      ++|.++|++++|++|... .++.|.|.++.+.|.+||++++...+.
T Consensus        81 ~~v~~~Ptl~~f~~g~~~-~~~~y~G~~t~~~l~~fi~~~~~~~~~  125 (140)
T d2b5ea1          81 VVIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENGHFDVD  125 (140)
T ss_dssp             CCCSSSSEEEEECCTTSC-CCCBCCSCCCHHHHHHHHHHHCTTCCC
T ss_pred             cccccCCeEEEEECCEEc-ceeEeCCCCCHHHHHHHHHHcCCCCCC
Confidence            999999999999999877 677899999999999999999766554

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.3e-22  Score=148.72  Aligned_cols=109  Identities=31%  Similarity=0.620  Sum_probs=98.0

Q ss_pred             CCCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          158 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       158 ~~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      .++.|..|+.++|++.+ +.++.++|+||++||++|+.+.+.|..++..+... .+.|+.+||+.+..  .+++|.++|+
T Consensus         8 ~~s~v~~lt~~~f~~~i-~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt   85 (119)
T d2b5ea4           8 EDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQDLCMEHNIPGFPS   85 (119)
T ss_dssp             TTSSCEECCTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCccEEcCHHHHHHHH-hcCCeEEEEEECCccCcccccchhhhhhhhhhccc-ceeeeeeeccchHHHHHHhccccCCe
Confidence            35689999999999987 46789999999999999999999999999998753 69999999998865  7899999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +++|++|... .++.|.|..+.+.|++||+++++
T Consensus        86 i~~f~~g~~~-~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          86 LKIFKNSDVN-NSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             EEEEETTCTT-CEEECCSCCSHHHHHHHHHHHTS
T ss_pred             EEEEECCEEe-eeEEecCCCCHHHHHHHHHHhhC
Confidence            9999999877 67789999999999999999865

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.86  E-value=6.1e-22  Score=145.34  Aligned_cols=105  Identities=22%  Similarity=0.392  Sum_probs=96.0

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      ..|..+++++|++.+.+.+++++|+||++||++|+.+.+.|.+++..+.+  .+.++.+|++.+..  ++|+|.++||++
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~~Pt~~   79 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALR   79 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCC--cceeceecccccHHHHHHhcccCCCEEE
Confidence            45889999999998888889999999999999999999999999999987  68999999998876  799999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++|+.+.   +|.|..+.+.|.+||+++++
T Consensus        80 ~~~~g~~v~---~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          80 LVKGEQILD---STEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEEE---EEeCCCCHHHHHHHHHHhcC
Confidence            999988765   89999999999999998763

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=8.4e-22  Score=144.58  Aligned_cols=105  Identities=25%  Similarity=0.504  Sum_probs=96.3

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      ..|..|+.++|++.+.+.+++++|+|||+||++|+.+.+.+.+++..+..  .+.++.+|++.+..  .+|++.++||++
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~PT~~   79 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc--ceeeeeccccchhhHHHHhCCCcEEEEE
Confidence            46889999999998888899999999999999999999999999998876  79999999998876  799999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +|++|+.+.   +|.|..+.+.|.+||+++++
T Consensus        80 ~~~~G~~v~---~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          80 LFKNGEVAA---TKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEETTEEEE---EEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEEE---EEeCCCCHHHHHHHHHHhcC
Confidence            999998765   89999999999999999863

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.86  E-value=6.9e-22  Score=144.04  Aligned_cols=102  Identities=26%  Similarity=0.524  Sum_probs=94.3

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      |++|++++|++.+++++++++|+||++||++|+.+.|.+.+++..+.+  .+.++.+|++.+..  ++|+|.++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcC--ccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            578999999999988899999999999999999999999999999977  67899999998876  79999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|+.+.   ++.|..+.+.|.+||++++
T Consensus        79 ~~G~~v~---~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNGERKE---SIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETTEEEE---EEEECCCHHHHHHHHHHHC
T ss_pred             EcCeEEE---EEeCCCCHHHHHHHHHHhC
Confidence            9998775   8999999999999999875

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.86  E-value=2.9e-22  Score=149.04  Aligned_cols=110  Identities=46%  Similarity=0.874  Sum_probs=94.5

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCC---cEEEEEEeCCCcccccCCCCcCceE
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD---SIVIAKMDGTTNEHHRAKSDGFPTI  236 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~---~v~~~~vd~~~~~~~~~~v~~~P~i  236 (313)
                      +.|+.|++++|++.+.+++++++|+||++||++|+.+.|.|.+++..+....   .+.+...++..+ ...++|.++||+
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Pti   80 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN-DVPDEIQGFPTI   80 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS-CCSSCCSSSSEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchh-hhcccccCCCEE
Confidence            6799999999999988889999999999999999999999999999997643   356666665543 257899999999


Q ss_pred             EEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          237 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       237 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      ++|++|... .++.|.|.++.+.|++||++++..+
T Consensus        81 ~~f~~g~~~-~~~~~~g~~~~~~l~~fi~~~~~~k  114 (116)
T d2djja1          81 KLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGKYK  114 (116)
T ss_dssp             EEECSSCTT-SCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             EEEECCccC-ceEEecCCCCHHHHHHHHHHccCcC
Confidence            999988775 5678999999999999999997644

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=146.70  Aligned_cols=111  Identities=34%  Similarity=0.665  Sum_probs=99.2

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      .+.|..|+.++|++.+ +.++.++|.||++||++|+.+.|.|.+++..+... ..+.++.+|++.+..  .+++|.++||
T Consensus         6 ~~~V~~l~~~~f~~~l-~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCeEEcCHHHHHHHH-hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            3568999999999977 56789999999999999999999999999998754 469999999998865  7899999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      +++|++|+.+ .+..|.|.++.+.|.+||++++++.
T Consensus        85 ~~~~~~G~~~-~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          85 IKFFRNGDTA-SPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEEESSCSS-SCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEEECCeEe-eeEEecCCCCHHHHHHHHHHhhCCC
Confidence            9999999876 6778999999999999999998764

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.84  E-value=1.9e-21  Score=142.37  Aligned_cols=103  Identities=22%  Similarity=0.476  Sum_probs=94.4

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      +..++.++|++.+.+++++++|+||++||++|+.+.|.+.+++..+.+  .+.++.+|++.+..  .+++|.++||+++|
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEEEEecccchhHHHHhcccceEEEEEE
Confidence            467899999999988889999999999999999999999999999877  68999999998876  79999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ++|+.+.   ++.|..+.+.|.+||+++++
T Consensus        81 ~~G~~v~---~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          81 KGGKKCE---TIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSSEEE---EEESCCCHHHHHHHHHHHCC
T ss_pred             ECCeEEE---EEeCCCCHHHHHHHHHHhhC
Confidence            9998775   89999999999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.83  E-value=9.5e-21  Score=138.11  Aligned_cols=101  Identities=21%  Similarity=0.409  Sum_probs=92.1

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEE
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF  239 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~  239 (313)
                      ...|+.++|++.+ +.+++++|+||++||++|+.+.+.+.+++..+.+  .+.|+.+|++.+..  .+|+|.++||+++|
T Consensus         2 ~i~lt~~~f~~~i-~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           2 TMTLTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEEECHHHHHHHH-hCCCcEEEEEECCCCCCcccccchhhhhhhhcCC--ceEEEEEECCCCcccHHHCCcceeeEEEEE
Confidence            4678999999976 5679999999999999999999999999999987  69999999999876  78999999999999


Q ss_pred             eCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          240 PAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       240 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      ++|..+.   ++.|..+.+.|.++|++.+
T Consensus        79 ~~G~~~~---~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          79 KGGEPVK---QLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEE---EEESCCCHHHHHHHTTTTC
T ss_pred             ECCEEEE---EEECCCCHHHHHHHHHHHh
Confidence            9998875   8999999999999998875

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.78  E-value=6.7e-19  Score=132.05  Aligned_cols=106  Identities=14%  Similarity=0.073  Sum_probs=87.4

Q ss_pred             CCCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccc------hhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCC
Q 021368          159 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHC------QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKS  230 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C------~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v  230 (313)
                      .+.|..|+.++|++.+. +.+.++|+||+|||++|      ..+.+.+..+|..+.+ ..+.|+.|||+.+..  .+++|
T Consensus        10 ~~~V~~L~~~nf~~~l~-~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~-~~v~~a~Vd~~~~~~l~~~~~I   87 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVFK-KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGL   87 (124)
T ss_dssp             CCCCEECCTTTHHHHHH-HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG-GTEEEEEEETTTSHHHHHTTTC
T ss_pred             CCccEECCHHHHHHHHH-hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc-CCeEEEEEEeecccchhhcccc
Confidence            46689999999999885 46789999999999964      3444555556665554 269999999999876  89999


Q ss_pred             CcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          231 DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       231 ~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      .++||+++|++|..+    .|.|.++.+.|++||.+.+..
T Consensus        88 ~~yPTi~~f~~g~~~----~y~G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          88 TEEDSIYVFKEDEVI----EYDGEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             CSTTCEEEEESSSEE----ECCSCCSHHHHHHHHHHHHSC
T ss_pred             ccCCcEEEeccCccE----EeeCCCCHHHHHHHHHHhcCC
Confidence            999999999988654    899999999999999988653

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=8.6e-19  Score=131.00  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=89.2

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcC-CCcEEEEEEeCCCccc-------ccCCC--
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH-------HRAKS--  230 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~vd~~~~~~-------~~~~v--  230 (313)
                      .+.+|+.++|++.+ .+.+.+||.||++||++|+  .|.|.+++..+.. ...+.++.|||+....       .++++  
T Consensus         3 g~v~L~~~nFd~~v-~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHHHH-TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHHHH-hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            47799999999988 4578999999999999999  4999999998754 3479999999976422       46766  


Q ss_pred             CcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCC
Q 021368          231 DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI  270 (313)
Q Consensus       231 ~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~  270 (313)
                      .++||+++|++|......+.|.|.++.+.|.+||+++++.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            5899999999887643445788999999999999999875

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.77  E-value=3.8e-19  Score=130.88  Aligned_cols=104  Identities=22%  Similarity=0.461  Sum_probs=90.5

Q ss_pred             CCeEEE-cCcChHHHhh---cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          160 GDVKIV-VGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       160 ~~v~~l-~~~~f~~~l~---~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      +.|..+ +.++|++.+.   ..+++++|+||++||++|+.+.|.|.+++..+.+  ++.|+.+|++.+..  .+|++.++
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~   79 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAM   79 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBS
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc--eEEEEEeeccccccccccccccCC
Confidence            456777 5678888774   3578999999999999999999999999999976  69999999998876  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ||+++|++|..+.   ++.| .+.+.|.+||.++++
T Consensus        80 Pt~~~~~~G~~v~---~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          80 PTFHVYKDGVKAD---DLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEEETTEEEE---EEES-CCHHHHHHHHHHHHC
T ss_pred             CEEEEEECCEEEE---EEeC-cCHHHHHHHHHHHhC
Confidence            9999999998875   7888 589999999999864

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.4e-18  Score=128.06  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=96.4

Q ss_pred             CCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           30 KLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+.|.+|+.++|++++.++..++|.||++| ++|+++.|.|++++..+.+ .+.|+.|||++   +..+|.+|+|.++ 
T Consensus         8 ~~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~-   83 (119)
T d2b5ea4           8 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE---NQDLCMEHNIPGF-   83 (119)
T ss_dssp             TTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             CCCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccc---hHHHHHHhccccC-
Confidence            3567899999999999988889999999999 9999999999999999975 59999999998   6799999999999 


Q ss_pred             CcEEEEEcCCC-CceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~-~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |++++|.+|. ...+.|.|.++.++|.+|+.+..
T Consensus        84 -Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          84 -PSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             -SEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             -CeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence             9999997765 44667899999999999999874

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.76  E-value=1.9e-18  Score=126.91  Aligned_cols=102  Identities=25%  Similarity=0.431  Sum_probs=88.9

Q ss_pred             CCCeEEEcCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-ccc--ccCCCCcCc
Q 021368          159 DGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~--~~~~v~~~P  234 (313)
                      .+.|..++.++|.+.+... +++++|+||++||++|+.+.|.|.+++..+.+   +.++.+|++. +..  .+|+|.++|
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~---v~~~~vd~~~~~~~l~~~~~V~~~P   81 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKLDCNQENKTLAKELGIRVVP   81 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc---ceeecccccccchhhHhheeeccCC
Confidence            3679999999999998654 57999999999999999999999999999864   7899999975 433  799999999


Q ss_pred             eEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          235 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      |+++|++|+.+.   ++.|. +.+.+.++|++.
T Consensus        82 t~~~~k~G~~v~---~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          82 TFKILKENSVVG---EVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEEETTEEEE---EEESS-CHHHHHHHHHHH
T ss_pred             EEEEEECCEEEE---EEeCC-CHHHHHHHHHHc
Confidence            999999999876   88885 778899999875

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=3e-18  Score=126.45  Aligned_cols=103  Identities=22%  Similarity=0.392  Sum_probs=88.4

Q ss_pred             CCeEEE-cCcChHHHhh---cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          160 GDVKIV-VGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       160 ~~v~~l-~~~~f~~~l~---~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      +.|..+ +.++|++.+.   +.+++++|+||++||++|+.+.|.|.+++..+.+   +.++.+|++.+..  .+|+|.++
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~~~~~~l~~~~~V~~~   82 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN---VLFLKVDTDELKSVASDWAIQAM   82 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS---EEEEEEETTTSHHHHHHTTCCSS
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc---cceeEEEeeeceeeccccceeee
Confidence            456656 6778887663   4578999999999999999999999999998864   8899999999876  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ||+++|++|+.+.   ++.|. +.+.|.+||.++++
T Consensus        83 Pt~~~~~~G~~v~---~~~G~-~~~~l~~~i~k~la  114 (114)
T d1xfla_          83 PTFMFLKEGKILD---KVVGA-KKDELQSTIAKHLA  114 (114)
T ss_dssp             SEEEEEETTEEEE---EEESC-CHHHHHHHHHHHCC
T ss_pred             EEEEEEECCEEEE---EEeCc-CHHHHHHHHHHhhC
Confidence            9999999998875   78884 78999999999874

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-18  Score=125.21  Aligned_cols=100  Identities=18%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             eEEE-cCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          162 VKIV-VGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l-~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      |+.+ +.++|++.+.+. ++.++|+||++||++|+.+.|.|.+++..+.+   +.|+.+|++.+..  .+++|.++||++
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~---~~f~~vd~d~~~~l~~~~~v~~~Pt~~   79 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ---AVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc---ccccccccccchhhhhhcCceeceEEE
Confidence            4555 567899888543 67899999999999999999999999998764   8899999998876  799999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|+.+.   ++.| .+.+.|.++|++++
T Consensus        80 ~~~~G~~v~---~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          80 FFRNKVRID---QYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEETTEEEE---EEES-SCHHHHHHHHHHHH
T ss_pred             EEECCEEEE---EEeC-CCHHHHHHHHHHhh
Confidence            999999876   8889 58999999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=3.6e-18  Score=125.41  Aligned_cols=103  Identities=24%  Similarity=0.421  Sum_probs=88.5

Q ss_pred             CCeEEEc-CcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCce
Q 021368          160 GDVKIVV-GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT  235 (313)
Q Consensus       160 ~~v~~l~-~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~  235 (313)
                      ..|..+. .++|+..+.. .+++++|.||++||++|+.+.|.|.+++..+++  .+.++.+|++.+..  .+|+|.++||
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~~i~~d~~~~l~~~~~V~~~Pt   82 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPT   82 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc--ceEEEEEEeecCcchhhcCCCccccE
Confidence            4466664 4678887753 578999999999999999999999999999986  69999999998876  7999999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +++|++|..+.   ++.|. +.+.|.+||++|+
T Consensus        83 ~~~~~~G~~v~---~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          83 FVFLKNGVKVE---EFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEEEETTEEEE---EEESC-CHHHHHHHHHHTC
T ss_pred             EEEEECCEEEE---EEeCC-CHHHHHHHHHhcC
Confidence            99999998875   78885 6678999999885

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.5e-18  Score=124.94  Aligned_cols=100  Identities=21%  Similarity=0.411  Sum_probs=84.9

Q ss_pred             eEEE-cCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEE
Q 021368          162 VKIV-VGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL  237 (313)
Q Consensus       162 v~~l-~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~  237 (313)
                      |+.+ +.++|++.+... +++++|+|||+||++|+.+.|.+.+++..+.+   +.++.+|++.+..  .+++|.++||++
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~~   78 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKCMPTFQ   78 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCBSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc---ceeeecccccCHhHHHHcCceEEEEEE
Confidence            3455 446788877544 58899999999999999999999999998764   6799999999876  799999999999


Q ss_pred             EEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          238 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       238 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      +|++|+.+.   ++.|. +.+.|.++|++.+
T Consensus        79 ~~~~G~~v~---~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          79 FFKKGQKVG---EFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEETTEEEE---EEESC-CHHHHHHHHHHHC
T ss_pred             EEECCEEEE---EEeCC-CHHHHHHHHHhhC
Confidence            999999875   88884 7889999998764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.73  E-value=7.1e-18  Score=123.24  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             ceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           33 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        33 ~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      .|.++|+++|+. +.....+++|.||++| ++|+++.|.|.+++.++.+.+.|+.|||++   ++.+|++|+|+++  |+
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~I~~~--Pt   77 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP---NPTTVKKYKVEGV--PA   77 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT---CHHHHHHTTCCSS--SE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccc---cHHHHHHhcccCC--CE
Confidence            588999999987 5566667888999999 999999999999999999999999999998   7799999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++++.+|. ...++.|.++.+.|.+|++++|+
T Consensus        78 ~~~~~~g~-~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          78 LRLVKGEQ-ILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEECCE-EEEEEeCCCCHHHHHHHHHHhcC
Confidence            99998664 34567899999999999999864

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.73  E-value=5.3e-18  Score=122.79  Aligned_cols=95  Identities=23%  Similarity=0.475  Sum_probs=82.9

Q ss_pred             cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCC
Q 021368          166 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN  243 (313)
Q Consensus       166 ~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~  243 (313)
                      +.++|++.+ +++++++|+||++||++|+.+.+.+.+++..+.+   +.++.+|++.+..  .+++|.++||+++|++|+
T Consensus         7 s~~~f~~~i-~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~---~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~   82 (103)
T d1syra_           7 SQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS   82 (103)
T ss_dssp             SHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred             CHHHHHHHH-hCCCcEEEEEeCCcccCcccccccchhhhhcccc---eEEEeeccccCcceeeeeeeecceEEEEEECCE
Confidence            456777766 4678999999999999999999999999999854   6789999998865  799999999999999998


Q ss_pred             CCcCceeeccCcCHHHHHHHHHhcC
Q 021368          244 KSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       244 ~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .+.   ++.|. +.+.|.+||.+++
T Consensus        83 ~v~---~~~G~-~~~~l~~~i~k~a  103 (103)
T d1syra_          83 SVD---TLLGA-NDSALKQLIEKYA  103 (103)
T ss_dssp             EEE---EEESC-CHHHHHHHHHTTC
T ss_pred             EEE---EEeCc-CHHHHHHHHHhhC
Confidence            875   78884 7889999999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.70  E-value=7.7e-18  Score=123.99  Aligned_cols=103  Identities=20%  Similarity=0.377  Sum_probs=84.4

Q ss_pred             CCeEEEcC-cChHHHh---hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcC
Q 021368          160 GDVKIVVG-NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGF  233 (313)
Q Consensus       160 ~~v~~l~~-~~f~~~l---~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~  233 (313)
                      +.|..+.. ++|++.+   ...+++++|+||++||++|+.+.|.|.+++..+.   ++.++.+|++.+..  .+++|.++
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~I~~~   80 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC---CceEEeeeeeccccccccCeeccc
Confidence            44555533 4455544   2457899999999999999999999999999875   47899999998876  78999999


Q ss_pred             ceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          234 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      ||+++|++|+.+.   ++.| .+.+.|.+||.++++
T Consensus        81 Pt~~~~k~G~~v~---~~~G-~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          81 PTFIFLKDGKLVD---KTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             TEEEEEETTEEEE---EEEC-CCTTHHHHHHHHHHH
T ss_pred             ceEEEEECCEEEE---EEcC-CCHHHHHHHHHHHhC
Confidence            9999999998875   7777 577899999999853

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.70  E-value=3.5e-17  Score=122.52  Aligned_cols=104  Identities=26%  Similarity=0.271  Sum_probs=89.9

Q ss_pred             CceEEeCCCcccccccCCCccEEEEEeeC-Cc------hhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhhhCC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLLLFAVS-ND------SEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~------c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      +.|.+||.+||++++.+...++|+||++| ++      |..+.+.++.+|..+.+. |.|+.|||++   ++.+|++|+|
T Consensus        11 ~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~---~~~l~~~~~I   87 (124)
T d1a8ya1          11 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK---DAAVAKKLGL   87 (124)
T ss_dssp             CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT---SHHHHHTTTC
T ss_pred             CccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec---ccchhhcccc
Confidence            46889999999999988888999999999 76      455666677777777654 9999999999   6699999999


Q ss_pred             CCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          104 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       104 ~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +++  ||+.+|.+|.  +..|.|.++.++|.+|+.+.+.
T Consensus        88 ~~y--PTi~~f~~g~--~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          88 TEE--DSIYVFKEDE--VIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             CST--TCEEEEESSS--EEECCSCCSHHHHHHHHHHHHS
T ss_pred             ccC--CcEEEeccCc--cEEeeCCCCHHHHHHHHHHhcC
Confidence            999  9999998764  6789999999999999999875

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.70  E-value=1.1e-17  Score=121.56  Aligned_cols=102  Identities=18%  Similarity=0.204  Sum_probs=92.7

Q ss_pred             eEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEE
Q 021368           34 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA  112 (313)
Q Consensus        34 v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~  112 (313)
                      ...||+++|++.++++.+++|.||++| ++|+.+.|.|.+++.++.+.+.|+.|||+.   ++.+|++|+|.++  |+++
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~V~~~--Pt~~   76 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE---NPETTSQFGIMSI--PTLI   76 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT---CHHHHHHTTCCBS--SEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCC---CcccHHHCCccee--eEEE
Confidence            468999999999988889999999999 999999999999999999999999999999   6799999999999  9999


Q ss_pred             EEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          113 YTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       113 ~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +|.+|. ...++.|..+.+.|.+++++++
T Consensus        77 ~~~~G~-~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          77 LFKGGE-PVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETTE-EEEEEESCCCHHHHHHHTTTTC
T ss_pred             EEECCE-EEEEEECCCCHHHHHHHHHHHh
Confidence            998765 3446789999999999998865

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.70  E-value=2.4e-17  Score=121.14  Aligned_cols=98  Identities=23%  Similarity=0.323  Sum_probs=83.3

Q ss_pred             eEEE-cCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          162 VKIV-VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       162 v~~l-~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      |..+ +.++|++.+ ..++.++|+|||+||++|+.+.|.|.+++..+.   ++.|+.+|++.+..  .+|+|.++||+++
T Consensus        10 vi~i~s~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_          10 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFII   85 (113)
T ss_dssp             CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eEEeCCHHHHHHHH-cCCCeEEEEEECCCCccchhhceeccccccccc---cccccccccccchhhHHHccccCCCEEEE
Confidence            5555 667788766 678899999999999999999999999999885   58999999998876  7999999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      |++|..+.   ++.|. +.+.+.++|.+.
T Consensus        86 ~~~G~~v~---~~~G~-~~~~l~~~l~~~  110 (113)
T d1r26a_          86 ARSGKMLG---HVIGA-NPGMLRQKLRDI  110 (113)
T ss_dssp             EETTEEEE---EEESS-CHHHHHHHHHHH
T ss_pred             EECCEEEE---EEeCC-CHHHHHHHHHHH
Confidence            99999875   78884 567777777654

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.9e-17  Score=122.26  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=95.2

Q ss_pred             CCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           31 LPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        31 ~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .+.|..||.++|++++..+..++|.||++| ++|+.+.|.|.+++..+.+   .+.++.|||+.   ++.+|.+|+|.++
T Consensus         6 ~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~   82 (120)
T d1meka_           6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE---ESDLAQQYGVRGY   82 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT---CCSSHHHHTCCSS
T ss_pred             CCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc---chhHHHHhCCccC
Confidence            346889999999999888888999999999 9999999999999999875   59999999998   6699999999999


Q ss_pred             CCcEEEEEcCCC-CceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~-~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |++++|.+|. .....|.|.++.++|.+||.+.++
T Consensus        83 --Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          83 --PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             --SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             --CeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence              9998887765 345678999999999999999764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.69  E-value=3.4e-17  Score=118.67  Aligned_cols=102  Identities=18%  Similarity=0.272  Sum_probs=89.9

Q ss_pred             eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      |.++|+++|++.+ ....+++|.||++| ++|+.+.|.|.+++.++.+.+.++.||+++   ++.+|++|||+++  |++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~---~~~l~~~~~V~~~--Pt~   75 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE---APGIATQYNIRSI--PTV   75 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTTCCSS--SEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEeccc---chhhhhhcceeee--eEE
Confidence            5789999999866 44556788899999 999999999999999999999999999998   7799999999999  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      ++|++|. ...++.|.++.+.|.+|++++|
T Consensus        76 ~~~~~G~-~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          76 LFFKNGE-RKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEEcCe-EEEEEeCCCCHHHHHHHHHHhC
Confidence            9998764 3446789999999999999874

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7.8e-17  Score=117.60  Aligned_cols=105  Identities=19%  Similarity=0.285  Sum_probs=92.6

Q ss_pred             CceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           32 PLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        32 ~~v~~lt~~~~~~-~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      +.|.+||.++|++ +...+.+++|.||++| ++|+.+.|.|.+++.++.+++.++.+|+++   ++.+|++|||.++  |
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~---~~~l~~~~~v~~~--P   76 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--P   76 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CTTHHHHTTCCSS--S
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccc---hhhHHHHhCCCcE--E
Confidence            4688999999987 4466667888899999 999999999999999999999999999998   6799999999999  9


Q ss_pred             EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          110 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      |++++.+|+ ...++.|.++.+.|.+||++.|+
T Consensus        77 T~~~~~~G~-~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          77 TLLLFKNGE-VAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCE-EEEEEeCCCCHHHHHHHHHHhcC
Confidence            999998764 34567899999999999998764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.67  E-value=4.2e-17  Score=118.84  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             HHHhhcCCCc-EEEEEeCCCCccchhhhHHHHHHHHHh--cCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCC
Q 021368          171 DEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHL--RGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKS  245 (313)
Q Consensus       171 ~~~l~~~~k~-~lv~fy~~~C~~C~~~~~~~~~la~~~--~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~  245 (313)
                      .+.+.+.+++ .++.||++||++|+.+.|.+.++|...  .....+.+..+|++.+..  .+|+|.++||+++|++|..+
T Consensus         7 ~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~   86 (107)
T d1a8la2           7 KQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDR   86 (107)
T ss_dssp             HHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred             HHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCCeEE
Confidence            3444455555 466799999999999999999998753  233469999999998765  79999999999999999876


Q ss_pred             cCceeeccCcCHHHHHHHHHhcC
Q 021368          246 FDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       246 ~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .   ++.|..+.+.|.+||.+.+
T Consensus        87 ~---~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          87 V---EFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             E---EEESCCCHHHHHHHHHHHH
T ss_pred             E---EEECCCCHHHHHHHHHHhh
Confidence            4   8999999999999998865

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.6e-16  Score=118.49  Aligned_cols=105  Identities=16%  Similarity=0.284  Sum_probs=86.9

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-------cc--CCC
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HR--AKS  230 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------~~--~~v  230 (313)
                      ..+..|+.++|++.+ ...+.++|.||++||..|..  +.|.++|..+.....+..+.+++...+.       .+  ++|
T Consensus         4 ~~~v~L~~~nFd~~i-~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           4 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             SSSCSCSHHHHHHHG-GGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CceEECCHHhHHHHH-hhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            346779999999988 56789999999999988864  8999999999876666666775554332       23  568


Q ss_pred             CcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          231 DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       231 ~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      .++||+++|++|+.. .++.|.|.++.+.|.+||+++.
T Consensus        81 ~~yPTi~~f~~G~~~-~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFE-NPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             SSCEEEEEEESSCCC-CCEEEESCCCHHHHHHHHHTTS
T ss_pred             cCCCeEEEEecCccc-CceecCCCCCHHHHHHHHHhcc
Confidence            899999999999876 6789999999999999999984

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.4e-17  Score=124.09  Aligned_cols=106  Identities=16%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             eEEEcCcChHHHhhcCC-CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          162 VKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~-k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      ...++..+|++.+...+ ++++|.||++||++|+.+.++|.+++..+.+. .+.++.||++.+..  .+|+|.++||+++
T Consensus        19 ~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~-~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             CEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS-CEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             CcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC-cceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            46688999999886554 57888999999999999999999999999774 48899999998876  7999999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                      |++|..+.   .+.|..+.+.|.++|+..+..+
T Consensus        98 ~~~G~~v~---~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          98 FTGGNYRG---VLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             EETTEEEE---EECCCSCHHHHHHHHHHHHSCS
T ss_pred             EEcCcEee---eecCCCCHHHHHHHHHHHhCcc
Confidence            99999876   8999999999999999887544

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.66  E-value=3.2e-16  Score=118.60  Aligned_cols=127  Identities=20%  Similarity=0.342  Sum_probs=110.2

Q ss_pred             CCCceEEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCc
Q 021368           30 KLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK  109 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P  109 (313)
                      .+|+|.++|.+++..+++.+.+.+++|+......+.+...+.++|++|.+++.|+++|.++   +....+.||+.....|
T Consensus         4 ~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~---~~~~l~~~gl~~~~~P   80 (133)
T d2djka1           4 GSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA---FGAHAGNLNLKTDKFP   80 (133)
T ss_dssp             SCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT---TGGGTTTTTCCSSSSS
T ss_pred             CCCceeccChhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHH---hHHHHHHhcCCcccCC
Confidence            5899999999999999988776555555544778999999999999999999999999887   5688999999877789


Q ss_pred             EEEEEcCCCCceecc--CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 021368          110 VLAYTGNDDAKKHIL--DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETND  159 (313)
Q Consensus       110 ~i~~~~~~~~~~~~~--~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~  159 (313)
                      .++++.......+.|  .+.++.++|.+||.++++|+++++++|+++|+.++
T Consensus        81 ~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe~~d  132 (133)
T d2djka1          81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQE  132 (133)
T ss_dssp             EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTSC
T ss_pred             cEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Confidence            999987766666665  46789999999999999999999999999998764

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.66  E-value=1.1e-16  Score=116.65  Aligned_cols=103  Identities=20%  Similarity=0.250  Sum_probs=90.2

Q ss_pred             eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEE
Q 021368           34 VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL  111 (313)
Q Consensus        34 v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i  111 (313)
                      +..+|+++|++.+ ..+.+++|.||++| ++|+.+.|.|.+++.++.+.+.|+.|||+.   ++.+|++|+|+++  |++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~V~~~--Pt~   77 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE---SPNVASEYGIRSI--PTI   77 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHHTCCSS--CEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEeccc---chhHHHHhcccce--EEE
Confidence            4567889998865 45556788899999 999999999999999999999999999998   6799999999999  999


Q ss_pred             EEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          112 AYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      +++.+|+ ...++.|.++.+.|.+|+.++|+
T Consensus        78 ~~~~~G~-~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          78 MVFKGGK-KCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EEESSSS-EEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEEECCe-EEEEEeCCCCHHHHHHHHHHhhC
Confidence            9998765 45567899999999999999863

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=3.1e-16  Score=116.84  Aligned_cols=106  Identities=12%  Similarity=0.062  Sum_probs=90.6

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhcc---CeEEEEEEeCCCc--ccccchhhhhCCC--
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNE--DVGKPVSEYFGIT--  104 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~---~~v~f~~vd~~~~--~~~~~l~~~~~v~--  104 (313)
                      -+.+|++.+|++++.+...++|.||++| ++|+.  |.|.++|+.+.   ..+.++.|||++.  ..++.+|++|+|.  
T Consensus         3 g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           3 GCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             TCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             ceEEcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            4779999999999998888899999999 99994  99999998875   3599999999764  2268999999995  


Q ss_pred             CCCCcEEEEEcCCCCc--eeccCCCCCHHHHHHHHHHHhc
Q 021368          105 GEAPKVLAYTGNDDAK--KHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ~~~~P~i~~~~~~~~~--~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++  ||+++|.++...  .+.+.|.++.++|.+|+.+..+
T Consensus        81 ~~--PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~  118 (122)
T d2c0ga2          81 NF--PSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP  118 (122)
T ss_dssp             SC--CEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CC--CcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcC
Confidence            56  999999887643  4567899999999999999864

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3e-16  Score=118.69  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             cCcChHHHhhc-CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCC
Q 021368          166 VGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG  242 (313)
Q Consensus       166 ~~~~f~~~l~~-~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g  242 (313)
                      +..++++.+.+ .+++++|.||++||++|+.+.|.+.+++..+.+  .+.|+.+|++.+..  ..|+|.++||+++|++|
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhc--cceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            45688888865 467999999999999999999999999999987  69999999999876  89999999999999999


Q ss_pred             CCCcC------ceeecc-CcCHHHHHHHHHhc
Q 021368          243 NKSFD------PINVDV-DRTVVALYKFLKKN  267 (313)
Q Consensus       243 ~~~~~------~~~y~g-~~~~~~l~~fi~~~  267 (313)
                      +.+..      .-.+.+ -.+.+.++..+...
T Consensus        87 ~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          87 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             cEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            87520      001122 13667777777654

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=2e-16  Score=110.14  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=71.2

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCc
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDR  255 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~  255 (313)
                      +|..+++|||+||++|+.+.|.|.+++..+..  .+.+..+|++.+..  .+|+|.++||++++++|       .+.|..
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g-------~~~G~~   72 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVINGDV-------EFIGAP   72 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE-------ECCSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccc--ccccccccccccccccccCCceEeeEEEEECCc-------EEECCC
Confidence            46789999999999999999999999999876  68889999988765  89999999999886543       466888


Q ss_pred             CHHHHHHHHHhcC
Q 021368          256 TVVALYKFLKKNA  268 (313)
Q Consensus       256 ~~~~l~~fi~~~~  268 (313)
                      +.+.|.+||++++
T Consensus        73 ~~~~l~~~i~~~L   85 (85)
T d1fo5a_          73 TKEALVEAIKKRL   85 (85)
T ss_dssp             SSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            8999999999875

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=7.4e-17  Score=119.34  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=76.7

Q ss_pred             eEEEcCcChHHHhhcC-CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEE
Q 021368          162 VKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF  238 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~-~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~  238 (313)
                      .+.++..+++..+... .+++++.||++||++|+.+.|.|.++++.+.+. ++.++.+|++.+..  .+|+|+++||+++
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~-~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF-DWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTS-CCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC-ceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            5668888999888544 467888899999999999999999999998763 58999999998765  8999999999999


Q ss_pred             EeCCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          239 FPAGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       239 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      |++|+.+.   ++.|..+.+.|.++|+..+
T Consensus        92 ~~~G~~v~---~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          92 FTDGKLRG---ALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             ESCC-------CEESCCCHHHHHHHHHHHH
T ss_pred             EEcCeEEE---EeeCCCCHHHHHHHHHHHh
Confidence            99999876   8999999999999998764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.62  E-value=3.1e-16  Score=115.59  Aligned_cols=98  Identities=13%  Similarity=0.216  Sum_probs=79.8

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCce
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPT  235 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~  235 (313)
                      +..++.+.+.+.+ +++++++|+||++||++|+.+.|.|.+++..++.  .+.++.++...+..      .+++|.++||
T Consensus        11 ~~~~t~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~--~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          11 LEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             SEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeCCHHHHHHHH-hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh--hhhhheeecccccccccccccccccccccE
Confidence            5667777888876 6788999999999999999999999999999865  45555444333221      5789999999


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHH
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLK  265 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~  265 (313)
                      +++|++|+...   ++.|..+.++|.+||.
T Consensus        88 li~~~~gk~~~---~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQINV---RCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTEEEE---ECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEE---EEcCCCCHHHHHHHHc
Confidence            99999998754   8999999999999983

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=5.5e-16  Score=118.45  Aligned_cols=106  Identities=13%  Similarity=0.199  Sum_probs=90.8

Q ss_pred             CCCceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC---eEEEEEEeCCCcccccchhhhhCCC
Q 021368           30 KLPLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~---~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      ..+.|.+|+..+|++++ .....++|+||++| ++|+.+.|.|.++|..+.+   .+.++.+|++.     .+|++|+|+
T Consensus        10 ~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~-----~~~~~~~v~   84 (140)
T d2b5ea1          10 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-----NDVRGVVIE   84 (140)
T ss_dssp             CSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-----CCCSSCCCS
T ss_pred             CCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc-----hhccccccc
Confidence            35679999999999977 45567889999999 9999999999999999875   47788888855     789999999


Q ss_pred             CCCCcEEEEEcCCC-CceeccCCCCCHHHHHHHHHHHhc
Q 021368          105 GEAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ~~~~P~i~~~~~~~-~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++  |++++|..|. ..++.|.|.++.+.|.+||.+...
T Consensus        85 ~~--Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~  121 (140)
T d2b5ea1          85 GY--PTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH  121 (140)
T ss_dssp             SS--SEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             cC--CeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCC
Confidence            99  9999998765 346678999999999999999754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.59  E-value=9.1e-16  Score=113.28  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=84.8

Q ss_pred             CceEEeCCCcccccc-cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-----EEEEEEeCCCcccccchhhhhCCC
Q 021368           32 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-----LIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~-~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-----v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      +.|..|+.++|++.+ ..+..++|.||++| ++|+++.|.|+++|..+.+.     +.+...++.      .++.+++|+
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~   75 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT------ANDVPDEIQ   75 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT------TSCCSSCCS
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc------hhhhccccc
Confidence            578999999999975 66678899999999 99999999999999999863     444444443      556789999


Q ss_pred             CCCCcEEEEEcCCC-CceeccCCCCCHHHHHHHHHHHhc
Q 021368          105 GEAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       105 ~~~~P~i~~~~~~~-~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++  |++++|..|. .....|.|.++.++|.+||.+...
T Consensus        76 ~~--Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          76 GF--PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             SS--SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             CC--CEEEEEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            99  9999997665 345678999999999999998643

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.59  E-value=1.7e-15  Score=105.28  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=69.6

Q ss_pred             EEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHH
Q 021368          181 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV  258 (313)
Q Consensus       181 ~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~  258 (313)
                      .++.||++||++|+.+.|.|.+++..+.+  ++.++.+|++.+..  .+|+|.++||+++  +|..     +|.|..+.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~-----~~~G~~~~~   74 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-----RFVGAPSRE   74 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-----EEECSSCCH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc--cccccccccccchhhHHhcCceEeCEEEE--CCcE-----EEEcCCCHH
Confidence            46679999999999999999999999976  69999999998876  7999999999877  3432     688999999


Q ss_pred             HHHHHHHhcC
Q 021368          259 ALYKFLKKNA  268 (313)
Q Consensus       259 ~l~~fi~~~~  268 (313)
                      .|.+||++++
T Consensus        75 ~l~~~i~~~l   84 (85)
T d1nhoa_          75 ELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999886

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.54  E-value=3.5e-15  Score=109.22  Aligned_cols=103  Identities=22%  Similarity=0.273  Sum_probs=85.6

Q ss_pred             ceEEe-CCCcccccc----cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           33 LVTIF-TRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        33 ~v~~l-t~~~~~~~~----~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      .|..+ |.++|+..+    ..+.+++|.||++| ++|+.+.|.|++++.++.+++.|+.|||++   ++.++++|||+++
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~v~~~   79 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA---VAAVAEAAGITAM   79 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---THHHHHHHTCCBS
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccc---cccccccccccCC
Confidence            35555 456666655    34567889999999 999999999999999999889999999998   7799999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+++++.+|. ....+.| .+.+.|.+||.++.+
T Consensus        80 --Pt~~~~~~G~-~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          80 --PTFHVYKDGV-KADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             --SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHHC
T ss_pred             --CEEEEEECCE-EEEEEeC-cCHHHHHHHHHHHhC
Confidence              9999998775 3344566 589999999999864

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.53  E-value=1.8e-14  Score=105.24  Aligned_cols=104  Identities=15%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             CCCceEEeCCCcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC
Q 021368           30 KLPLVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE  106 (313)
Q Consensus        30 ~~~~v~~lt~~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~  106 (313)
                      ....|.+++.++|...+..  ..+++|.||++| ++|+.+.|.|.+++.++.+ +.|+.+|++.+  ++.++++|||+++
T Consensus         4 ~~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~--~~~l~~~~~V~~~   80 (112)
T d1f9ma_           4 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELGIRVV   80 (112)
T ss_dssp             CTTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHCCSSS
T ss_pred             cceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeeccccccc--chhhHhheeeccC
Confidence            3567899999999998743  456788899999 9999999999999999998 78999999753  6799999999999


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        |++++|++|. ....+.|. +.+.+.++|...
T Consensus        81 --Pt~~~~k~G~-~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          81 --PTFKILKENS-VVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             --SEEEEEETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             --CEEEEEECCE-EEEEEeCC-CHHHHHHHHHHc
Confidence              9999998765 33446674 778999999875

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=7.4e-15  Score=108.42  Aligned_cols=98  Identities=23%  Similarity=0.453  Sum_probs=73.1

Q ss_pred             cChHHHhh-cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEEEe
Q 021368          168 NNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFP  240 (313)
Q Consensus       168 ~~f~~~l~-~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~~~  240 (313)
                      ++++..+. ..+|+++|+||++||++|+.+.+.+...+.......++.+..+|+..+..      .+++|.++|++++|.
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~   90 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFD   90 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEEEe
Confidence            45555553 35789999999999999999999985444433322256777788766543      578999999999994


Q ss_pred             -CCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          241 -AGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       241 -~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                       +|+.+ ...++.|..+.+.|.++|++
T Consensus        91 ~~G~~~-~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          91 GQGQEH-PQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             TTSCBC-GGGCBCSCCCHHHHHHHHHH
T ss_pred             CCCcEE-ecccccccCCHHHHHHHHhc
Confidence             56554 23367899999999999986

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-14  Score=107.70  Aligned_cols=98  Identities=17%  Similarity=0.273  Sum_probs=76.4

Q ss_pred             eEEEcCcChHHHhhc-CCCcEEEEEeCC-------CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-------cc-
Q 021368          162 VKIVVGNNFDEIVLD-ESKDVLLEIYAP-------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------EH-  225 (313)
Q Consensus       162 v~~l~~~~f~~~l~~-~~k~~lv~fy~~-------~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------~~-  225 (313)
                      |...+.++|.+.+.. ++++++|+|||+       ||++|+.+.|.+.+++..+.+  ++.|+.+|++..       .. 
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~--~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC--ceEEEEEECCCCcccchhhhhH
Confidence            445566788888754 457999999995       999999999999999998875  699999998643       21 


Q ss_pred             -ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHH
Q 021368          226 -HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK  265 (313)
Q Consensus       226 -~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~  265 (313)
                       .+|+|.++||+++|++|+++.   .+.+ .+.+.|..|++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~l~---~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQKLV---ESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCEEE---GGGG-GCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeEEe---eeec-CCHHHHHHHhc
Confidence             578999999999999887642   4444 46666666765

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=3.5e-15  Score=110.99  Aligned_cols=101  Identities=9%  Similarity=-0.034  Sum_probs=83.1

Q ss_pred             ceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-------eEEEEEEeCCCcccccchhhhhC--
Q 021368           33 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-------KLIFVYVQMDNEDVGKPVSEYFG--  102 (313)
Q Consensus        33 ~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-------~v~f~~vd~~~~~~~~~l~~~~~--  102 (313)
                      .+.+||+++|++++.+...++|.||++| .+|.  .|.|+++|..+.+       +|.++.+||+.   ++.+|.+++  
T Consensus         5 ~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~---n~~l~~~~~~~   79 (122)
T d1g7ea_           5 GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKL---NMELSEKYKLD   79 (122)
T ss_dssp             SSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCH---HHHHHHHHTCS
T ss_pred             ceEECCHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccc---cHHHHHhhccc
Confidence            4678999999999999889999999999 7775  3888999988875       34455556666   779998876  


Q ss_pred             CCCCCCcEEEEEcCCC-CceeccCCCCCHHHHHHHHHHH
Q 021368          103 ITGEAPKVLAYTGNDD-AKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~-~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      |+++  |||++|..|. ..+..|.|.++.++|.+||.+.
T Consensus        80 I~~y--PTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          80 KESY--PVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSSC--EEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             ccCC--CeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            6678  9999998876 3467799999999999999885

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=1.8e-14  Score=105.41  Aligned_cols=104  Identities=14%  Similarity=0.125  Sum_probs=87.5

Q ss_pred             CCceEEe-CCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCC
Q 021368           31 LPLVTIF-TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP  108 (313)
Q Consensus        31 ~~~v~~l-t~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~  108 (313)
                      .|.+.++ +.++|+++++.+...+|+||++| ++|+.+.|.|.+++.++.+ +.|+.||+++   ++.+++.|||.++  
T Consensus         7 ~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~---~~~l~~~~~V~~~--   80 (113)
T d1r26a_           7 YPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKFAKVDADN---NSEIVSKCRVLQL--   80 (113)
T ss_dssp             CSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCSS--
T ss_pred             CCceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceecccccccccc-cccccccccc---chhhHHHccccCC--
Confidence            4455555 66778888888888888999999 9999999999999999986 9999999998   7799999999999  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      |++++|.+|+. ...+.| .+.+.+.+.+.+++.
T Consensus        81 Pt~~~~~~G~~-v~~~~G-~~~~~l~~~l~~~ik  112 (113)
T d1r26a_          81 PTFIIARSGKM-LGHVIG-ANPGMLRQKLRDIIK  112 (113)
T ss_dssp             SEEEEEETTEE-EEEEES-SCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCEE-EEEEeC-CCHHHHHHHHHHHhc
Confidence            99999987753 334566 467889998888764

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.48  E-value=6.9e-14  Score=99.13  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             ChHHHhhcCCC-cEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCC
Q 021368          169 NFDEIVLDESK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKS  245 (313)
Q Consensus       169 ~f~~~l~~~~k-~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~  245 (313)
                      ++.+.+.+-.+ ..++.||++||++|+.+.|.|.+++....   ++.+..+|++.+..  .+|+|.++||+++  +|.. 
T Consensus         5 ~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~-   78 (96)
T d1hyua4           5 SLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKE-   78 (96)
T ss_dssp             HHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE-
T ss_pred             HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccchHHHhhcccccccEEEE--CCEE-
Confidence            44455555444 56888999999999999999999998743   69999999999876  7899999999865  5554 


Q ss_pred             cCceeeccCcCHHHHHHHHH
Q 021368          246 FDPINVDVDRTVVALYKFLK  265 (313)
Q Consensus       246 ~~~~~y~g~~~~~~l~~fi~  265 (313)
                          .+.|.++.++|+++|.
T Consensus        79 ----~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          79 ----FGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             ----EEESCCCHHHHHHHHC
T ss_pred             ----EEecCCCHHHHHHHHh
Confidence                6789999999999884

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.48  E-value=1.3e-14  Score=104.50  Aligned_cols=95  Identities=20%  Similarity=0.290  Sum_probs=81.8

Q ss_pred             CCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcC
Q 021368           38 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN  116 (313)
Q Consensus        38 t~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~  116 (313)
                      |.++|+++++++..++|.||++| ++|+.+.|.|++++.++.+ +.|+.+|+++   ++.++++|||.++  ||+++|.+
T Consensus         7 s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~---~~~~~~~~~V~~~--Pt~i~~k~   80 (103)
T d1syra_           7 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDE---VSEVTEKENITSM--PTFKVYKN   80 (103)
T ss_dssp             SHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---THHHHHHTTCCSS--SEEEEEET
T ss_pred             CHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeecccc---Ccceeeeeeeecc--eEEEEEEC
Confidence            55677888877888889999999 9999999999999999987 6799999998   7799999999999  99999987


Q ss_pred             CCCceeccCCCCCHHHHHHHHHHH
Q 021368          117 DDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       117 ~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                      |.. ..++.| .+.+.|.+||.++
T Consensus        81 G~~-v~~~~G-~~~~~l~~~i~k~  102 (103)
T d1syra_          81 GSS-VDTLLG-ANDSALKQLIEKY  102 (103)
T ss_dssp             TEE-EEEEES-CCHHHHHHHHHTT
T ss_pred             CEE-EEEEeC-cCHHHHHHHHHhh
Confidence            753 344567 5789999999875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=7.7e-14  Score=96.70  Aligned_cols=81  Identities=15%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ..+++||++| ++|+.+.|.|.+++..+.+.+.+..+|+++   +++++++|||+++  ||+++++++     .+.|.++
T Consensus         4 v~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~---~~~la~~~~V~~~--Pt~~i~~~g-----~~~G~~~   73 (85)
T d1fo5a_           4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME---NPQKAMEYGIMAV--PTIVINGDV-----EFIGAPT   73 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS---SCCTTTSTTTCCS--SEEEETTEE-----ECCSSSS
T ss_pred             eEEEEEECCCCcChHhhhhhccccccccccccccccccccc---cccccccCCceEe--eEEEEECCc-----EEECCCC
Confidence            4577899999 999999999999999999999999999998   6799999999999  999776543     3578899


Q ss_pred             HHHHHHHHHHHh
Q 021368          130 LDKIKTFGEDFL  141 (313)
Q Consensus       130 ~~~i~~fi~~~~  141 (313)
                      .+.|.+||++.|
T Consensus        74 ~~~l~~~i~~~L   85 (85)
T d1fo5a_          74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=4.9e-14  Score=103.36  Aligned_cols=101  Identities=19%  Similarity=0.192  Sum_probs=82.7

Q ss_pred             eEEe-CCCcccccc----cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           34 VTIF-TRENAPSVF----ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        34 v~~l-t~~~~~~~~----~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      |..+ |.++|++.+    ..+..++|.||++| ++|+.+.|.|++++..+.+ +.|+.||+++   ++.++++|||+++ 
T Consensus         8 vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~---~~~l~~~~~V~~~-   82 (114)
T d1xfla_           8 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDE---LKSVASDWAIQAM-   82 (114)
T ss_dssp             CEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT---SHHHHHHTTCCSS-
T ss_pred             EEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeee---ceeeccccceeee-
Confidence            4444 556666544    44567788899999 9999999999999999988 8899999998   7799999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       ||+++|.+|+ ....+.| .+.+.|.+||.++++
T Consensus        83 -Pt~~~~~~G~-~v~~~~G-~~~~~l~~~i~k~la  114 (114)
T d1xfla_          83 -PTFMFLKEGK-ILDKVVG-AKKDELQSTIAKHLA  114 (114)
T ss_dssp             -SEEEEEETTE-EEEEEES-CCHHHHHHHHHHHCC
T ss_pred             -EEEEEEECCE-EEEEEeC-cCHHHHHHHHHHhhC
Confidence             9999998775 3344566 478999999999863

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.8e-14  Score=102.07  Aligned_cols=96  Identities=8%  Similarity=0.127  Sum_probs=81.1

Q ss_pred             CCCcccccccC--CCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368           38 TRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        38 t~~~~~~~~~~--~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      |.++|+..+..  ....+|.||++| ++|+.+.|.|++++.++.+ +.|+.+|+++   ++.++++|||.++  |++++|
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~---~~~l~~~~~v~~~--Pt~~~~   81 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQ---CQGTAATNNISAT--PTFQFF   81 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---SHHHHHHTTCCSS--SEEEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-cccccccccc---chhhhhhcCceec--eEEEEE
Confidence            56677776533  445677799999 9999999999999999998 8999999998   7799999999999  999999


Q ss_pred             cCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          115 GNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       115 ~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      .+|. ....+.| .+.+.|.++|.+++
T Consensus        82 ~~G~-~v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          82 RNKV-RIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             ETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeC-CCHHHHHHHHHHhh
Confidence            8775 3345667 58999999999886

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.46  E-value=8e-14  Score=102.04  Aligned_cols=93  Identities=18%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             ccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCc
Q 021368           42 APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  120 (313)
Q Consensus        42 ~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~  120 (313)
                      |+.....+..++|.||++| ++|+.+.|.|.+++.++.+ +.|+.+|+++   ++.++++|+|+++  ||+++|++|.. 
T Consensus        19 l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~---~~~l~~~~~I~~~--Pt~~~~k~G~~-   91 (113)
T d1ti3a_          19 FEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDE---LKAVAEEWNVEAM--PTFIFLKDGKL-   91 (113)
T ss_dssp             HHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTT---CHHHHHHHHCSST--TEEEEEETTEE-
T ss_pred             HHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeec---cccccccCeeccc--ceEEEEECCEE-
Confidence            4445566677888899999 9999999999999999987 8899999998   6799999999999  99999987753 


Q ss_pred             eeccCCCCCHHHHHHHHHHHhc
Q 021368          121 KHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       121 ~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ...+.| .+.+.|.+||.++..
T Consensus        92 v~~~~G-~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          92 VDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEEEC-CCTTHHHHHHHHHHH
T ss_pred             EEEEcC-CCHHHHHHHHHHHhC
Confidence            334456 688999999999853

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.45  E-value=1.1e-13  Score=100.39  Aligned_cols=100  Identities=9%  Similarity=0.033  Sum_probs=80.3

Q ss_pred             eCCCcccccccCCCccEE-EEEeeC-CchhhhhHHHHHHHHh----ccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           37 FTRENAPSVFESPIKNQL-LLFAVS-NDSEKLLPVFEEAAKS----FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        37 lt~~~~~~~~~~~~~~~v-~f~~~~-~~c~~~~~~~~~~a~~----~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      |+++.++.+.....+..| +|+++| ++|+++.|.|.++|..    +.+.|.+..+|+++   ++.++++|||.++  ||
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~---~~~l~~~~~V~~v--PT   76 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE---YPEWADQYNVMAV--PK   76 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG---CHHHHHHTTCCSS--CE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc---ccccccccccccc--eE
Confidence            455555555554555544 599999 9999999999999864    44569999999998   6799999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ++++.+|. ...++.|.++.+.|.+++.+.++
T Consensus        77 i~i~~~G~-~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          77 IVIQVNGE-DRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             EEEEETTE-EEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEeCCe-EEEEEECCCCHHHHHHHHHHhhC
Confidence            98887664 34567899999999999998763

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.4e-14  Score=100.84  Aligned_cols=99  Identities=10%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             EEe-CCCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcE
Q 021368           35 TIF-TRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV  110 (313)
Q Consensus        35 ~~l-t~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~  110 (313)
                      .++ +.++|++.+.  .+...+|.||++| ++|+.+.|.|.+++..+.+ +.|+.||+++   ++.++++++|+++  ||
T Consensus         3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~---~~~~~~~~~V~~~--Pt   76 (105)
T d2ifqa1           3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD---CQDVASECEVKCM--PT   76 (105)
T ss_dssp             EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT---CHHHHHHTTCCBS--SE
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeeccccc---CHhHHHHcCceEE--EE
Confidence            344 3355666653  3446778899999 9999999999999999988 6799999998   7799999999999  99


Q ss_pred             EEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          111 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       111 i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                      +++|++|.. ..++.| .+.+.|.++|.+++
T Consensus        77 ~~~~~~G~~-v~~~~G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          77 FQFFKKGQK-VGEFSG-ANKEKLEATINELV  105 (105)
T ss_dssp             EEEEETTEE-EEEEES-CCHHHHHHHHHHHC
T ss_pred             EEEEECCEE-EEEEeC-CCHHHHHHHHHhhC
Confidence            999987753 345667 47899999998864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=1.3e-13  Score=100.59  Aligned_cols=102  Identities=14%  Similarity=0.193  Sum_probs=83.1

Q ss_pred             CceEEeCC-Ccccccc--cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIFTR-ENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~lt~-~~~~~~~--~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+.++.+ ++|+..+  .++..++|.||++| ++|+.+.|.|++++.++.+.+.++.||+++   ++.++++|||.++ 
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~---~~~l~~~~~V~~~-   80 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE---CEDIAMEYNISSM-   80 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTTCCSS-
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeec---CcchhhcCCCccc-
Confidence            34556644 5677655  34557788899999 999999999999999999999999999998   6799999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                       |+++++.+|. ....+.|. +.+.|.+||.+.
T Consensus        81 -Pt~~~~~~G~-~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          81 -PTFVFLKNGV-KVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             -SEEEEEETTE-EEEEEESC-CHHHHHHHHHHT
T ss_pred             -cEEEEEECCE-EEEEEeCC-CHHHHHHHHHhc
Confidence             9999998765 33456674 668899999875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.6e-14  Score=106.42  Aligned_cols=114  Identities=8%  Similarity=0.040  Sum_probs=92.8

Q ss_pred             HHHhcCCCceEEeCCCcccccccCCCcc--EEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcccccchhhh
Q 021368           25 FVFSNKLPLVTIFTRENAPSVFESPIKN--QLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEY  100 (313)
Q Consensus        25 fi~~~~~~~v~~lt~~~~~~~~~~~~~~--~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~~~~~l~~~  100 (313)
                      .++......+..++..+|+.........  ++.|+++| ++|+.+.|+|.+++++|.+. +.++.|||+.   ++.++++
T Consensus        10 ~~~~~~~~g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~---~~~la~~   86 (132)
T d2hfda1          10 LWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDR   86 (132)
T ss_dssp             HHHHHHTTTCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH---HHHHHHH
T ss_pred             HHHHHHHcCCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC---CHHHHHh
Confidence            3333334467788889998876554433  33478999 99999999999999999985 7899999998   6799999


Q ss_pred             hCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCC
Q 021368          101 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK  144 (313)
Q Consensus       101 ~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~  144 (313)
                      |||.++  |++++|++|. ....+.|.++.+++.+++..++...
T Consensus        87 ~~V~~~--PT~~~~~~G~-~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          87 FGVFRF--PATLVFTGGN-YRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             HTCCSC--CEEEEEETTE-EEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             hccCcc--eeEEEEEcCc-EeeeecCCCCHHHHHHHHHHHhCcc
Confidence            999999  9999998775 3456799999999999999998743

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.42  E-value=9.9e-14  Score=96.08  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=70.0

Q ss_pred             cEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021368           52 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL  130 (313)
Q Consensus        52 ~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~  130 (313)
                      .+.+||++| ++|+++.|.|++++.++.+++.|+.+|+++   +++++++|||+++  |+++++  +.   ..+.|.++.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~--Pt~~~~--~~---~~~~G~~~~   73 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV---DREKAIEYGLMAV--PAIAIN--GV---VRFVGAPSR   73 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT---CGGGGGGTCSSCS--SEEEET--TT---EEEECSSCC
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccccccccccccc---chhhHHhcCceEe--CEEEEC--Cc---EEEEcCCCH
Confidence            355699999 999999999999999999999999999998   7799999999999  998663  22   246799999


Q ss_pred             HHHHHHHHHHh
Q 021368          131 DKIKTFGEDFL  141 (313)
Q Consensus       131 ~~i~~fi~~~~  141 (313)
                      +.|.+||.+.+
T Consensus        74 ~~l~~~i~~~l   84 (85)
T d1nhoa_          74 EELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3e-13  Score=110.32  Aligned_cols=109  Identities=23%  Similarity=0.330  Sum_probs=88.2

Q ss_pred             CCCeEEEc-CcChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCcCc
Q 021368          159 DGDVKIVV-GNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFP  234 (313)
Q Consensus       159 ~~~v~~l~-~~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~v~~~P  234 (313)
                      .+.|..|+ .+.|.+.+.+.+  ..++|.||++||++|+.|.+.|..+|.++.   .+.|++||++..+. ..|++.++|
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~---~vkF~ki~~~~~~~~~~~~i~~lP  174 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRASNTGAGDRFSSDVLP  174 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHHHHTCSTTSCGGGCS
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc---cceEEEEccccchhHHhCCCCCCC
Confidence            47788886 578999886554  368999999999999999999999998875   48999999886654 789999999


Q ss_pred             eEEEEeCCCCCcCceeecc----CcCHHHHHHHHHhcCCC
Q 021368          235 TILFFPAGNKSFDPINVDV----DRTVVALYKFLKKNASI  270 (313)
Q Consensus       235 ~i~~~~~g~~~~~~~~y~g----~~~~~~l~~fi~~~~~~  270 (313)
                      |+++|++|..+...+.+..    ..+.+.|..||.++.-+
T Consensus       175 tl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g~l  214 (217)
T d2trcp_         175 TLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL  214 (217)
T ss_dssp             EEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTTCS
T ss_pred             eEEEEECCEEEEEEECccccccccCCHHHHHHHHHHcCCC
Confidence            9999999998753333331    35678999999988644

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.6e-13  Score=103.40  Aligned_cols=99  Identities=7%  Similarity=-0.060  Sum_probs=78.6

Q ss_pred             CCccccccc--CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEc
Q 021368           39 RENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG  115 (313)
Q Consensus        39 ~~~~~~~~~--~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~  115 (313)
                      ..++++.+.  ..+.++|.||++| ++|+++.|.|.++|.++.+.+.|+.||+++   +++++++|+|++.  |++++|.
T Consensus        10 ~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~---~~~la~~~~I~~~--PT~~~f~   84 (137)
T d1qgva_          10 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE---VPDFNKMYELYDP--CTVMFFF   84 (137)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---CCTTTTSSCSCSS--CEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccc---cchhhhhcCeeeE--EEEEEEe
Confidence            345666553  3446777899999 999999999999999999999999999998   7799999999988  9999998


Q ss_pred             CCCCceecc--------CCC-CCHHHHHHHHHHHhc
Q 021368          116 NDDAKKHIL--------DGE-LTLDKIKTFGEDFLE  142 (313)
Q Consensus       116 ~~~~~~~~~--------~g~-~~~~~i~~fi~~~~~  142 (313)
                      +|+.....+        .+. .+.+++.+.++....
T Consensus        85 ~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          85 RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             TTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence            776332222        222 477888888887654

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.39  E-value=2.1e-13  Score=100.47  Aligned_cols=104  Identities=7%  Similarity=0.030  Sum_probs=77.1

Q ss_pred             CceEEeCCCcccccccCCCccEEE--EEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcccccchhhhhCCCCCC
Q 021368           32 PLVTIFTRENAPSVFESPIKNQLL--LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEA  107 (313)
Q Consensus        32 ~~v~~lt~~~~~~~~~~~~~~~v~--f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~~~~~l~~~~~v~~~~  107 (313)
                      ..+..++..+++.........+|+  |+++| ++|+.+.|.|.+++++|.+ ++.++.||++.   ++.++++|||+++ 
T Consensus        11 ~g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~---~~~l~~~~~V~~~-   86 (119)
T d2es7a1          11 RGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ---SEAIGDRFNVRRF-   86 (119)
T ss_dssp             TTCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH---HHHHHHTTTCCSS-
T ss_pred             cCCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC---CHHHHHhcCcCcc-
Confidence            457788999999877665444444  67899 9999999999999999998 69999999998   6799999999999 


Q ss_pred             CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368          108 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus       108 ~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                       |++++|++|+ ....+.|.++.+++.++++..+
T Consensus        87 -Pt~~~~~~G~-~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          87 -PATLVFTDGK-LRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             -SEEEEESCC-----CEESCCCHHHHHHHHHHHH
T ss_pred             -eEEEEEEcCe-EEEEeeCCCCHHHHHHHHHHHh
Confidence             9999998765 3456789999999999999875

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.33  E-value=6.5e-13  Score=97.40  Aligned_cols=111  Identities=11%  Similarity=0.126  Sum_probs=88.6

Q ss_pred             HHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc-ccccchhhh
Q 021368           23 ADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-DVGKPVSEY  100 (313)
Q Consensus        23 ~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~-~~~~~l~~~  100 (313)
                      ..|..+.  -.+...|.+.+.+.+..+...+|+||++| ++|+++.|.|.+++.+++..+.++.++.... ...+.++++
T Consensus         2 ~~~~~n~--~~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~   79 (115)
T d1zmaa1           2 EQFLDNI--KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSR   79 (115)
T ss_dssp             HHHHHHT--TTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHH
T ss_pred             chhhhcc--eeeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccc
Confidence            3455443  33667777888888888889999999999 9999999999999999998877666554332 113578899


Q ss_pred             hCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368          101 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       101 ~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      +||.++  ||++++++|. ...++.|.++.++|.+|+.
T Consensus        80 ~~V~~~--PTli~~~~gk-~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          80 YGIPTV--PGFVHITDGQ-INVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             HTCCSS--CEEEEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             cccccc--cEEEEEECCE-EEEEEcCCCCHHHHHHHHc
Confidence            999999  9999998775 4567899999999999984

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=4.6e-12  Score=93.95  Aligned_cols=109  Identities=20%  Similarity=0.226  Sum_probs=92.5

Q ss_pred             EEeCCCcccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEE
Q 021368           35 TIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT  114 (313)
Q Consensus        35 ~~lt~~~~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~  114 (313)
                      .+++.+++.+++..+.+.+++|+.+....+.+...+.++|++|++++.|+.+|.++   +.+.++.||+.. ..|.+++.
T Consensus         3 gei~~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~---~~~~l~~fgl~e-~~P~~~i~   78 (125)
T d2b5ea3           3 GEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARK---FGRHAGNLNMKE-QFPLFAIH   78 (125)
T ss_dssp             CBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHH---HTTHHHHTTCCS-CSSEEEEE
T ss_pred             CccCHHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHH---hHHHHHHcCCCc-cCCcEEEE
Confidence            47888899999988877666677655667899999999999999999999999987   568899999986 47999888


Q ss_pred             cCCCCceecc-------------CCCCCHHHHHHHHHHHhcCCCCC
Q 021368          115 GNDDAKKHIL-------------DGELTLDKIKTFGEDFLEGKLKP  147 (313)
Q Consensus       115 ~~~~~~~~~~-------------~g~~~~~~i~~fi~~~~~~~~~~  147 (313)
                      ...+..+|.+             .+..+.++|.+|+.+++.|+++|
T Consensus        79 ~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP  124 (125)
T d2b5ea3          79 DMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  124 (125)
T ss_dssp             ETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             ecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence            8776666665             36799999999999999999976

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.23  E-value=2.2e-11  Score=85.91  Aligned_cols=77  Identities=10%  Similarity=0.050  Sum_probs=65.6

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ..+++|+++| ++|+.+.|.|.++|..+.. +.|..+|++.   +++++++|||+++  |++++  +|+   ..+.|.++
T Consensus        17 ~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~-i~~~~vd~~~---~~~l~~~~~I~~v--Pt~~~--ng~---~~~~G~~~   85 (96)
T d1hyua4          17 FEFETYYSLSCHNCPDVVQALNLMAVLNPR-IKHTAIDGGT---FQNEITERNVMGV--PAVFV--NGK---EFGQGRMT   85 (96)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCTT-EEEEEEETTT---CHHHHHHTTCCSS--SEEEE--TTE---EEEESCCC
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHhCCc-eEEEEEeccc---chHHHhhcccccc--cEEEE--CCE---EEEecCCC
Confidence            4566799999 9999999999999988766 9999999999   7799999999999  99844  332   24679999


Q ss_pred             HHHHHHHHH
Q 021368          130 LDKIKTFGE  138 (313)
Q Consensus       130 ~~~i~~fi~  138 (313)
                      .++|.++++
T Consensus        86 ~~~l~~~le   94 (96)
T d1hyua4          86 LTEIVAKVD   94 (96)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999998875

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.4e-11  Score=91.56  Aligned_cols=95  Identities=20%  Similarity=0.230  Sum_probs=63.5

Q ss_pred             CcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------c
Q 021368          167 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------N  223 (313)
Q Consensus       167 ~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~  223 (313)
                      ++.+....+.++|+++|.|||+||++|+..+|.+.+++...   -.+....++.+.                       .
T Consensus         9 g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~---~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~   85 (136)
T d1z5ye1           9 GQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQG---IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGM   85 (136)
T ss_dssp             TCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTT---CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCH
T ss_pred             CcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhhh---hhhcccccccchhhhHHHHHHcCCccceeecccchh
Confidence            34455545557999999999999999999999999986531   122222222111                       1


Q ss_pred             ccccCCCCcCceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          224 EHHRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       224 ~~~~~~v~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                      ....|++.++|+.+++. +|..+.   .+.|..+.+.|.+.|++.
T Consensus        86 ~~~~~~v~~~P~~~liD~~G~i~~---~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          86 LGLDLGVYGAPETFLIDGNGIIRY---RHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             HHHHHTCCSBSEEEEECTTSCEEE---EEESCCCHHHHHHHTHHH
T ss_pred             HHHhcccCCcceEEEEcCCCEEEE---EEEcCCCHHHHHHHHHHH
Confidence            11456889999999995 455443   678887877776666554

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4e-11  Score=87.97  Aligned_cols=98  Identities=15%  Similarity=0.121  Sum_probs=72.1

Q ss_pred             eCCCccccccc--CCCccEEEEEee-------C-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc----ccccchhhhhC
Q 021368           37 FTRENAPSVFE--SPIKNQLLLFAV-------S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE----DVGKPVSEYFG  102 (313)
Q Consensus        37 lt~~~~~~~~~--~~~~~~v~f~~~-------~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~----~~~~~l~~~~~  102 (313)
                      .+.++|.+.+.  .++.++|.||++       | ++|+++.|.|.+++..+.+.+.|+.||+++.    +.+..++++||
T Consensus         7 ~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~   86 (119)
T d1woua_           7 SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK   86 (119)
T ss_dssp             ESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC
T ss_pred             CCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCC
Confidence            34455555543  344677889984       9 9999999999999999999999999998542    11567999999


Q ss_pred             CCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021368          103 ITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE  138 (313)
Q Consensus       103 v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~  138 (313)
                      |.++  ||+++|++++. -....+ .+.+-+..|+.
T Consensus        87 V~~i--PT~i~~~~g~~-l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          87 VTAV--PTLLKYGTPQK-LVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             CCSS--SEEEETTSSCE-EEGGGG-GCHHHHHHHHH
T ss_pred             eEEE--EEEEEEECCeE-Eeeeec-CCHHHHHHHhc
Confidence            9999  99999987752 122222 45666666664

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=9.8e-11  Score=87.85  Aligned_cols=99  Identities=19%  Similarity=0.263  Sum_probs=69.8

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc------------------
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------  223 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------------------  223 (313)
                      +..++++.+.-.-. .+|+++|.||++||++|+..+|.+.+++.++++   +.++.++....                  
T Consensus        10 ~~~~~G~~~~l~~~-~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~v~v~~~d~~~~~~~~~~~~~~~~~~~   85 (134)
T d1zzoa1          10 AKTLDGHDFHGESL-LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLDQVPAMQEFVNKYPVKTFTQ   85 (134)
T ss_dssp             EEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHTTCTTSEE
T ss_pred             EEcCCCCEEeHHHh-CCCEEEEEecccccCcccccchhhHHHHhhhcc---cccccccccccchhHHHHHHhcCCcceeE
Confidence            44455544443222 478999999999999999999999999998865   33333333220                  


Q ss_pred             -------ccccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          224 -------EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       224 -------~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                             ....|++.++|+++++.....+.   .+.|..+.+.|.+.|++.
T Consensus        86 l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~---~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          86 LADTDGSVWANFGVTQQPAYAFVDPHGNVD---VVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             EECTTCHHHHHTTCCSSSEEEEECTTCCEE---EEESCCCHHHHHHHHHHH
T ss_pred             EeeccchHHHhcCCCccCeEEEECCCCeEE---EEECCCCHHHHHHHHHhh
Confidence                   01346889999999996554442   467888999999988764

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.4e-10  Score=87.16  Aligned_cols=78  Identities=17%  Similarity=0.438  Sum_probs=57.5

Q ss_pred             cChHHHh---hcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-c--cCCCCcCceEEEEe-
Q 021368          168 NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H--RAKSDGFPTILFFP-  240 (313)
Q Consensus       168 ~~f~~~l---~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~--~~~v~~~P~i~~~~-  240 (313)
                      .+|++.+   ...+|+++|+||++||++|+.+.+.+...........++..+.+|++.... .  ......+|+++++. 
T Consensus        12 ~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~   91 (135)
T d1sena_          12 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDP   91 (135)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECT
T ss_pred             eEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECC
Confidence            3455544   356899999999999999999999987766544433468889999887655 2  23455689999994 


Q ss_pred             CCCCC
Q 021368          241 AGNKS  245 (313)
Q Consensus       241 ~g~~~  245 (313)
                      +|...
T Consensus        92 ~G~~~   96 (135)
T d1sena_          92 SGKVH   96 (135)
T ss_dssp             TSCBC
T ss_pred             CCeEE
Confidence            56654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.02  E-value=7e-10  Score=84.00  Aligned_cols=101  Identities=13%  Similarity=0.170  Sum_probs=71.8

Q ss_pred             EEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------
Q 021368          163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------  224 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------  224 (313)
                      ...+++...-.. -.+|+++|+||++||++|+..++.+.++..+++.. .+.+..+......                  
T Consensus         9 ~~~~~~~~~l~~-~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1           9 KTADNRPASVYL-KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             EETTSCBGGGGC-CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             ECCCCCEeeHHH-hCCCEEEEEEECCCCccccccCcchhhhhhhhccC-CcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            334444433322 35799999999999999999999999999888754 3555445432211                  


Q ss_pred             ------------cccCCCCcCceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          225 ------------HHRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       225 ------------~~~~~v~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                                  ...|++.++|+++++. +|+.+.   .+.|..+.+.|.++|++..
T Consensus        87 ~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~---~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQR---IVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEE---EEESCCCHHHHHHHHHCTT
T ss_pred             ccccccccchHHHHHcCCCccCEEEEECCCCEEEE---EEECCCCHHHHHHHHHHHh
Confidence                        0345788999999994 555433   6779999999999998653

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=8.3e-10  Score=82.65  Aligned_cols=101  Identities=20%  Similarity=0.312  Sum_probs=70.0

Q ss_pred             eEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc----------------
Q 021368          162 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----------------  225 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----------------  225 (313)
                      +..++++.+.-.-. .+|+++|+||++||++|+...|.+.+++..+++   +.+..++.+.+..                
T Consensus         9 ~~~~~G~~~~l~~~-~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~v~v~~~~~~~~~~~~~~~~~~~~p~~   84 (134)
T d1lu4a_           9 ATTLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA---VTFVGIATRADVGAMQSFVSKYNLNFTNL   84 (134)
T ss_dssp             EEBTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHHTCCSEEE
T ss_pred             eECCCCCEEcHHHh-CCCEEEEEEeecccCCceecchhHHHHhhhhcc---ccccccccccchhhhhhhhhhhcccccee
Confidence            44455555543222 478999999999999999999999999987654   5566666543111                


Q ss_pred             --------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          226 --------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       226 --------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                              ..|++.++|+++++.....+.......|..+.+.|.+-|.+
T Consensus        85 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          85 NDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             ECTTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             eCchHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence                    35689999999999554433111134567888999888865

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.5e-09  Score=79.12  Aligned_cols=89  Identities=8%  Similarity=0.102  Sum_probs=69.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCc-ccccchhhhhCCCCCCCcEEEEEcCCCCc--
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEAPKVLAYTGNDDAK--  120 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~-~~~~~l~~~~~v~~~~~P~i~~~~~~~~~--  120 (313)
                      .+++++|.||++| ++|+.+.|.+   .++...+.+ +.+..+|+..+ ..+..++++|||.++  |++++++.++..  
T Consensus        21 ~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~v~~~--Pt~~~~~~~G~~~~   97 (117)
T d2fwha1          21 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGL--PTILFFDGQGQEHP   97 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSS--SEEEEECTTSCBCG
T ss_pred             CCCeEEEEEecccCCcccccchhHHhHHHHHHhccc-eEEEecccccchhHHHHHHhhhehhhc--eEEEEEeCCCcEEe
Confidence            4567888999999 9999999988   566666666 66667776543 226789999999999  999999765422  


Q ss_pred             eeccCCCCCHHHHHHHHHH
Q 021368          121 KHILDGELTLDKIKTFGED  139 (313)
Q Consensus       121 ~~~~~g~~~~~~i~~fi~~  139 (313)
                      ..++.|.++.+.+.+++.+
T Consensus        98 ~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          98 QARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             GGCBCSCCCHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHhc
Confidence            2356899999999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.92  E-value=5.8e-10  Score=84.61  Aligned_cols=87  Identities=21%  Similarity=0.288  Sum_probs=61.4

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEE-----------------------eCCCcccccCCCCcC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM-----------------------DGTTNEHHRAKSDGF  233 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v-----------------------d~~~~~~~~~~v~~~  233 (313)
                      .+|+++|+||++||++|+..++.+.++...+..  .+..+.+                       |-+......|++.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF--QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS--EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCc--eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            478999999999999999999999888665432  2222222                       211111156789999


Q ss_pred             ceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHhcC
Q 021368          234 PTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA  268 (313)
Q Consensus       234 P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~  268 (313)
                      |+.+++. +|+.+.   .+.|..+.+.|.+.|.+.+
T Consensus       108 P~~~liD~~G~i~~---~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         108 PETFVVGREGTIVY---KLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             CEEEEECTTSBEEE---EEESCCCHHHHHHTHHHHH
T ss_pred             ceEEEEcCCCeEEE---EEeCCCCHHHHHHHHHHHH
Confidence            9999995 455443   6778889888888887653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=5.7e-09  Score=78.85  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             EEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------
Q 021368          163 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------  224 (313)
Q Consensus       163 ~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------  224 (313)
                      ..++++...... ..+++++|+||++||++|...++.+.++...+++  .+.+..++.....                  
T Consensus        15 ~~~ng~~~~~~~-~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (143)
T d2b5xa1          15 AWLNGEVTREQL-IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (143)
T ss_dssp             EEESCCCCHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             cCcCCeEecHHH-hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhhhhhHHHhhccC
Confidence            345665555444 3678999999999999999999999999999986  4555555543210                  


Q ss_pred             -----------cccCCCCcCceEEEEe-CCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          225 -----------HHRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       225 -----------~~~~~v~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                                 ...|++.++|+++++. +|..+.   .+.|..+.+.|.+-|++
T Consensus        92 ~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRH---FQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEE---EEESCSTTHHHHHHHHH
T ss_pred             ccccccCccchHHHcCCCcCCEEEEECCCCEEEE---EEECCCCHHHHHHHHHh
Confidence                       0235788999999994 454433   67788888888887765

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.88  E-value=2.1e-09  Score=81.37  Aligned_cols=65  Identities=18%  Similarity=0.293  Sum_probs=54.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--------------------------ccCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--------------------------~~~~v  230 (313)
                      .+|+++|+|||+||++|+..+|.+.++.++++....+.++.++.+....                          ..|++
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            5799999999999999999999999999999876578888887765321                          23688


Q ss_pred             CcCceEEEEeC
Q 021368          231 DGFPTILFFPA  241 (313)
Q Consensus       231 ~~~P~i~~~~~  241 (313)
                      .++|+++++..
T Consensus       107 ~~iPt~~lid~  117 (144)
T d1i5ga_         107 KSIPTLVGVEA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCcCEEEEEeC
Confidence            99999999965

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.4e-09  Score=80.32  Aligned_cols=95  Identities=14%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             ChHHHh---hcCCCcEEEEEeCCCCccchhhhHHH---HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCcCceEEE
Q 021368          169 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF  238 (313)
Q Consensus       169 ~f~~~l---~~~~k~~lv~fy~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~----~~~~v~~~P~i~~  238 (313)
                      +|++.+   ...+|+++|+|+++||.+|+.|...+   .++...+..  ++.+..+|.+..+.    ..|++.++|++++
T Consensus        30 ~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~  107 (147)
T d2dlxa1          30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (147)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             CHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchhhhhhhhheecCceeEEEE
Confidence            455444   45689999999999999999997754   455555554  68899999877654    5889999999999


Q ss_pred             EeC--CCCCcCceeeccCcCHHHHHHHHHhcCC
Q 021368          239 FPA--GNKSFDPINVDVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       239 ~~~--g~~~~~~~~y~g~~~~~~l~~fi~~~~~  269 (313)
                      +..  |..+    +.-|..+.+.++..|++.+.
T Consensus       108 idp~~ge~v----~~~~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         108 LDPRTGQKL----VEWHQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             ECTTTCCCC----EEESSCCHHHHHHHHHHHHH
T ss_pred             EeCCCCeEe----cccCCCCHHHHHHHHHHHHh
Confidence            953  4444    34455788777666666543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.79  E-value=9.2e-09  Score=77.79  Aligned_cols=65  Identities=22%  Similarity=0.427  Sum_probs=53.6

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--------------------------ccCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--------------------------~~~~v  230 (313)
                      .+|+++|+||++||++|+..+|.+.++..++....++.+..+..+....                          +.|++
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            4799999999999999999999999999999765578888887765321                          23478


Q ss_pred             CcCceEEEEeC
Q 021368          231 DGFPTILFFPA  241 (313)
Q Consensus       231 ~~~P~i~~~~~  241 (313)
                      .++|+++++..
T Consensus       107 ~~~Pt~~lID~  117 (144)
T d1o73a_         107 ESIPTLITINA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEEC
Confidence            89999999964

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.9e-09  Score=76.18  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=64.5

Q ss_pred             cCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeecc
Q 021368          176 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       176 ~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g  253 (313)
                      +..-+++++|+++||+.|..+.+.+.+++..+    ...+..+|.+.+..  ++|++. +|++++  +|..     .+.|
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~----~~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~-----~~~g   80 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF----ILQEVDITLPENSTWYERYKFD-IPVFHL--NGQF-----LMMH   80 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSS----EEEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSE-----EEES
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhc----ceEEEecccccCHHHHHHhccc-CCceee--cCce-----EEeC
Confidence            45668999999999999999999998886554    35667777777655  688876 998765  5554     4668


Q ss_pred             CcCHHHHHHHHHhcCC
Q 021368          254 DRTVVALYKFLKKNAS  269 (313)
Q Consensus       254 ~~~~~~l~~fi~~~~~  269 (313)
                      ..+.+.|.++|++..+
T Consensus        81 ~~d~~~L~~~L~~l~~   96 (100)
T d1wjka_          81 RVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             SCCHHHHHHHHHSSSC
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            8899999999988754

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=8.5e-09  Score=77.23  Aligned_cols=87  Identities=17%  Similarity=0.314  Sum_probs=66.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------ccCCCCc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------HRAKSDG  232 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------~~~~v~~  232 (313)
                      .+++++|+||++||++|...++.+.++..++... ++.+..++++.+..                        ..|++.+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccc
Confidence            5689999999999999999999999999998764 57777776543211                        2458889


Q ss_pred             CceEEEEeCCCCCcCceeeccCcCHHHHHHHHHh
Q 021368          233 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK  266 (313)
Q Consensus       233 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~  266 (313)
                      +|+++++.....+  ..++.|..+.+.+.++++.
T Consensus       103 ~P~~~liD~~G~i--~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKV--VKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEE--EEEEESCCCHHHHHHHHHH
T ss_pred             cceEEEECCCCEE--EEEEECCCCHHHHHHHHHh
Confidence            9999999554443  1267788888888777754

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=5.9e-09  Score=84.37  Aligned_cols=103  Identities=11%  Similarity=0.108  Sum_probs=79.4

Q ss_pred             CCceEEeCC-CcccccccCC---CccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCC
Q 021368           31 LPLVTIFTR-ENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG  105 (313)
Q Consensus        31 ~~~v~~lt~-~~~~~~~~~~---~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~  105 (313)
                      ...|.+++. ++|...+...   ..++|.||++| ++|+.+.+.|.+||.+|.. +.|+.||++.   . .+...|+|.+
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~---~-~~~~~~~i~~  172 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASN---T-GAGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHH---H-TCSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEcccc---c-hhHHhCCCCC
Confidence            357888864 6677765322   23566799999 9999999999999999988 9999999876   3 3568899998


Q ss_pred             CCCcEEEEEcCCCCcee-----ccCC-CCCHHHHHHHHHHH
Q 021368          106 EAPKVLAYTGNDDAKKH-----ILDG-ELTLDKIKTFGEDF  140 (313)
Q Consensus       106 ~~~P~i~~~~~~~~~~~-----~~~g-~~~~~~i~~fi~~~  140 (313)
                      .  |++++|++|.....     .+.| ..+.+.|..|+.++
T Consensus       173 l--Ptl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         173 L--PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             C--SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             C--CeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            8  99999998863211     1122 46889999998875

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.69  E-value=1.2e-08  Score=80.59  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=55.7

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCc-------------------------------cc
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------------------------------EH  225 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------------------------------~~  225 (313)
                      .+++++|.||++||++|+..++.+.++.++|++  ++.+..++....                               ..
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc
Confidence            468999999999999999999999999999986  577766654210                               00


Q ss_pred             ccCCCCcCceEEEEeCCCCCcCceeeccC
Q 021368          226 HRAKSDGFPTILFFPAGNKSFDPINVDVD  254 (313)
Q Consensus       226 ~~~~v~~~P~i~~~~~g~~~~~~~~y~g~  254 (313)
                      ..|++.++|+++++.....+    .|.|.
T Consensus       109 ~~~~v~~~P~~~liD~~G~i----~y~G~  133 (187)
T d2cvba1         109 KAYRALRTPEVFLFDERRLL----RYHGR  133 (187)
T ss_dssp             HHTTCCEESEEEEECTTCBE----EEEEC
T ss_pred             ccccccceeeEEEEcCCCeE----EEEee
Confidence            34588999999999665554    67664

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.67  E-value=4.9e-08  Score=76.24  Aligned_cols=106  Identities=15%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---c----------
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---H----------  226 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~----------  226 (313)
                      ..+..++++.+.-.-. .+|+++|+||++||++|....+.+.++...+... .+.+..+.++....   .          
T Consensus        39 f~l~d~~G~~v~L~~~-kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~  116 (176)
T d1jfua_          39 LAFEDADGKPKKLSDF-RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFLKEANLTR  116 (176)
T ss_dssp             CEEECTTSCEEEGGGG-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHHHHTTCCT
T ss_pred             eEEECCCcCEEeHHHh-CCCEEEEEeccCcccchHHHHHhhhhcccccccc-ccccccccccccchhhhhhhHhhhCCcc
Confidence            3445555554442212 5799999999999999999999999999988764 45555555442111   0          


Q ss_pred             -----------------cCCCCcCceEEEEeCCCCCcCceeeccC--cCHHHHHHHHHhcCC
Q 021368          227 -----------------RAKSDGFPTILFFPAGNKSFDPINVDVD--RTVVALYKFLKKNAS  269 (313)
Q Consensus       227 -----------------~~~v~~~P~i~~~~~g~~~~~~~~y~g~--~~~~~l~~fi~~~~~  269 (313)
                                       .+++.++|+.+++.....+  ..++.|.  .+.++++++|+..++
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I--~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         117 LGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCE--IATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             TCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBE--EEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             eeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEE--EEEEECCCCCChHHHHHHHHHhcC
Confidence                             1145678999998554443  1156673  456889999987653

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.66  E-value=3.3e-08  Score=74.50  Aligned_cols=65  Identities=17%  Similarity=0.318  Sum_probs=53.8

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--------------------------ccCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------HRAKS  230 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--------------------------~~~~v  230 (313)
                      .+|+++|+||++||++|+..++.+.++..++.....+.++.++.+....                          ..|++
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            4789999999999999999999999999999776567777777664211                          24589


Q ss_pred             CcCceEEEEeC
Q 021368          231 DGFPTILFFPA  241 (313)
Q Consensus       231 ~~~P~i~~~~~  241 (313)
                      .++|+++++..
T Consensus       105 ~~~Pt~~liD~  115 (144)
T d1o8xa_         105 ESIPTLIGVDA  115 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEeC
Confidence            99999999974

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.48  E-value=3.1e-07  Score=68.85  Aligned_cols=105  Identities=14%  Similarity=0.043  Sum_probs=78.5

Q ss_pred             EEeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc--------------------
Q 021368           35 TIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED--------------------   92 (313)
Q Consensus        35 ~~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~--------------------   92 (313)
                      ...+...+.-...++++.+|.||+.| ++|++..|.+.++.++++. .+.+..|......                    
T Consensus         9 ~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (143)
T d2fy6a1           9 KTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKL   88 (143)
T ss_dssp             EETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTS
T ss_pred             ECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCccc
Confidence            34444444444456678888899999 9999999999999998885 3555555542110                    


Q ss_pred             -----cccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021368           93 -----VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL  141 (313)
Q Consensus        93 -----~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~  141 (313)
                           ....+++.||+.++  |++++++.++...+.+.|.++.+.+.+++++..
T Consensus        89 ~~~~D~~~~~~~~~~v~~~--P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          89 PVVTDNGGTIAQSLNISVY--PSWALIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             CEEECTTCHHHHHTTCCSS--SEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             ccccccchHHHHHcCCCcc--CEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence                 13466889999988  999999877656667789999999999998763

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.3e-07  Score=71.29  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=73.3

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHH---HHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCcee
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH  122 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~---~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~  122 (313)
                      ..++..+|+|+++| ..|+.+....   .++...++..+.+..+|.++.+ +..+++.|+|.++  |+++++++..+...
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e-~~~~~~~y~v~~~--Pti~~idp~~ge~v  116 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDF--PYVSILDPRTGQKL  116 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSS--SEEEEECTTTCCCC
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchh-hhhhhhheecCce--eEEEEEeCCCCeEe
Confidence            34667888899999 9999987743   4566666667889999988865 7899999999988  99999975333334


Q ss_pred             ccCCCCCHHHHHHHHHHHhcC
Q 021368          123 ILDGELTLDKIKTFGEDFLEG  143 (313)
Q Consensus       123 ~~~g~~~~~~i~~fi~~~~~~  143 (313)
                      ...|.++.+.+...+.+++..
T Consensus       117 ~~~~~~~~~~fl~~L~~fl~~  137 (147)
T d2dlxa1         117 VEWHQLDVSSFLDQVTGFLGE  137 (147)
T ss_dssp             EEESSCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHhh
Confidence            445678999999999988863

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=5.5e-07  Score=66.65  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------------------cccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------------------~~~~l~~~~~v~~~  106 (313)
                      .+++.+|.||++| ++|+...|.|.++++++++ +.++.|+..+..                    ....+.+.||+.++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            4567888899999 9999999999999999987 444555533211                    13578889999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        |++++++.++...+ ..|..+.++|.+.|+++
T Consensus       103 --P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         103 --PAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             --SEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             --CeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence              99888876654333 46889999999998875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=1.2e-06  Score=64.86  Aligned_cols=101  Identities=7%  Similarity=0.042  Sum_probs=73.2

Q ss_pred             EeCCCcccccccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc-------------------ccc
Q 021368           36 IFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-------------------VGK   95 (313)
Q Consensus        36 ~lt~~~~~~~~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~-------------------~~~   95 (313)
                      .++.+.+.--.-.++..+|.||++| ++|....|.+.+++.++++ +.|+.|+.++..                   ...
T Consensus        11 ~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~   89 (134)
T d1lu4a_          11 TLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADG   89 (134)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTS
T ss_pred             CCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeCchH
Confidence            3444444432234667888899999 9999999999999999987 666777754311                   135


Q ss_pred             chhhhhCCCCCCCcEEEEEcCCCCcee--ccCCCCCHHHHHHHHHH
Q 021368           96 PVSEYFGITGEAPKVLAYTGNDDAKKH--ILDGELTLDKIKTFGED  139 (313)
Q Consensus        96 ~l~~~~~v~~~~~P~i~~~~~~~~~~~--~~~g~~~~~~i~~fi~~  139 (313)
                      .+++.||+.+.  |++++++.++...+  ...|..+.++|.+-|..
T Consensus        90 ~~~~~~~v~~~--P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          90 VIWARYNVPWQ--PAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             HHHHHTTCCSS--SEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCcC--CEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            68889999988  99989887654333  23567899999887764

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.39  E-value=6.7e-07  Score=67.05  Aligned_cols=91  Identities=11%  Similarity=0.158  Sum_probs=71.5

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc------------------------cccchhhhh
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------------------------VGKPVSEYF  101 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~------------------------~~~~l~~~~  101 (313)
                      ..++..++.||++| ++|....|.+.++.+++++.+.|+.|+.....                        ....+++.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            35557778899999 99999999999999999987888888764321                        123477888


Q ss_pred             CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368          102 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus       102 ~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      ++.++  |++++++.++...+.+.|..+.+.+.+-+++
T Consensus       107 ~v~~~--P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         107 ENEYV--PAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CCCCS--SEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             CCCcC--CEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            99888  9988887776556677888888888887765

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.27  E-value=3.4e-07  Score=70.57  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC---CCCcCceEEEEeCCC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA---KSDGFPTILFFPAGN  243 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~---~v~~~P~i~~~~~g~  243 (313)
                      .++..++.||++||++|+...|.+.+++..+.+   +.+..++.+.+..  ..+   +...+|.++++....
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~---~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~  121 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN---IELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEF  121 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT---EEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTC
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC---CcEEEEECccCHHHHHHHHHhccccccceeecCccc
Confidence            467789999999999999999999999988753   6666676665544  444   445778887775443

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=2.4e-06  Score=63.33  Aligned_cols=91  Identities=13%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc-------------------cccchhhhhCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE  106 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~-------------------~~~~l~~~~~v~~~  106 (313)
                      .++..+|.||++| ++|....+.+.++..++.+. +.|+.|++++..                   ....+++.||+.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            4557788899999 99999999999999998864 888887764321                   13577889999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF  140 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~  140 (313)
                        |++++++.++...+.+.|..+.+.+.++++.+
T Consensus       104 --P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         104 --PTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             --CEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             --ceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence              98888887765566678989998888877543

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=3.1e-06  Score=66.34  Aligned_cols=96  Identities=11%  Similarity=0.154  Sum_probs=73.8

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------------------------cccchhhh
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------------VGKPVSEY  100 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------------------------~~~~l~~~  100 (313)
                      .++..+|.|++.| ++|+...|.+.+++++|++++.|+.|+..+..                          ....+.+.
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            3457778899999 99999999999999999988888888753200                          24578899


Q ss_pred             hCCCCCCCcEEEEEcCCCCceeccCCC----------CCHHHHHHHHHHHhcCCCCC
Q 021368          101 FGITGEAPKVLAYTGNDDAKKHILDGE----------LTLDKIKTFGEDFLEGKLKP  147 (313)
Q Consensus       101 ~~v~~~~~P~i~~~~~~~~~~~~~~g~----------~~~~~i~~fi~~~~~~~~~~  147 (313)
                      ||+...  |++++++.+..  ..|.|.          .+...|...|...++|+..+
T Consensus       111 ~~v~~~--P~~~liD~~G~--i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~~  163 (187)
T d2cvba1         111 YRALRT--PEVFLFDERRL--LRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEPP  163 (187)
T ss_dssp             TTCCEE--SEEEEECTTCB--EEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCC
T ss_pred             ccccce--eeEEEEcCCCe--EEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Confidence            999988  98888887653  334432          45567999999999887644

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.22  E-value=1.1e-06  Score=65.76  Aligned_cols=93  Identities=15%  Similarity=0.126  Sum_probs=70.1

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc------------------cccchhhhhCCCCCCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------------------VGKPVSEYFGITGEAP  108 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~------------------~~~~l~~~~~v~~~~~  108 (313)
                      +++..+|.||+.| ++|+...|.+.++...++..+..+.++.....                  ....+.+.||+.++  
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~--  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV--  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS--
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc--
Confidence            4457788899999 99999999999998887765444443321110                  13468899999988  


Q ss_pred             cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          109 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       109 P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      |+.++++.++...+.+.|..+.+.+.+.+.+.+.
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~  141 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  141 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            9888888776666677899999999998887653

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1.6e-06  Score=64.24  Aligned_cols=94  Identities=11%  Similarity=0.005  Sum_probs=67.5

Q ss_pred             ccCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCc------------------ccccchhhhhCCCCC
Q 021368           46 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------------------DVGKPVSEYFGITGE  106 (313)
Q Consensus        46 ~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~------------------~~~~~l~~~~~v~~~  106 (313)
                      +.++++++|.||+.| ++|+...|.+.+++...-. +....++.+..                  +.+..+...||+.++
T Consensus        17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~-vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   95 (136)
T d1z5ye1          17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIR-VVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA   95 (136)
T ss_dssp             HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCC-EEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSB
T ss_pred             HcCCCEEEEEEEcCcCCCcCccccchhhhhhhhhh-hcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCc
Confidence            346678888999999 9999999999999775332 32222221100                  013468899999988


Q ss_pred             CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368          107 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       107 ~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                        |+.++++.++...+.+.|..+.+.+.+.|.+.+.
T Consensus        96 --P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          96 --PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             --SEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             --ceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence              9888888776666667898998888887776654

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.07  E-value=1e-05  Score=59.58  Aligned_cols=110  Identities=11%  Similarity=0.131  Sum_probs=82.3

Q ss_pred             CCeEEEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCC--CcCce
Q 021368          160 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKS--DGFPT  235 (313)
Q Consensus       160 ~~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v--~~~P~  235 (313)
                      +.|.+++.+++..+. +.+++.+++|++.. .....+...+.++|+++++  .+.|+.+|...+..  ..+++  ...|+
T Consensus         6 PLv~e~~~~n~~~~~-~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~--ki~Fv~vd~~~~~~~l~~~gl~~~~~P~   81 (133)
T d2djka1           6 PLIGEIGPETYSDYM-SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPA   81 (133)
T ss_dssp             CCSEECCHHHHHHHH-HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSE
T ss_pred             CceeccChhhHHHHh-cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcC--ceEEEEEeHHHhHHHHHHhcCCcccCCc
Confidence            457889999999977 56778888888765 4567889999999999987  69999999887665  56666  57899


Q ss_pred             EEEEeCCCCCcCceeeccCcCHHHHHHHHHhcCCCCcc
Q 021368          236 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       236 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~  273 (313)
                      ++++.......-+..-.+..+.+.|.+|+++.+.-+++
T Consensus        82 ~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~  119 (133)
T d2djka1          82 FAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIE  119 (133)
T ss_dssp             EEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCC
T ss_pred             EEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCC
Confidence            99885443321111224567899999999998764433

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.1e-06  Score=61.51  Aligned_cols=83  Identities=8%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             cCCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021368           47 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD  125 (313)
Q Consensus        47 ~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~  125 (313)
                      ....+.+++|+++| +.|+.+.+.|++++..|..  .++.+|.+.   ++.+.++|+++ .  |++++ + |.   ..+.
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~~--~~v~vd~~~---~~~l~~~y~~~-V--Pvl~i-d-g~---~~~~   79 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFIL--QEVDITLPE---NSTWYERYKFD-I--PVFHL-N-GQ---FLMM   79 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSEE--EEEETTSST---THHHHHHSSSS-C--SEEEE-S-SS---EEEE
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcce--EEEeccccc---CHHHHHHhccc-C--Cceee-c-Cc---eEEe
Confidence            34556777888999 9999999999999888774  456667766   67999999986 7  98754 3 22   1245


Q ss_pred             CCCCHHHHHHHHHHHhc
Q 021368          126 GELTLDKIKTFGEDFLE  142 (313)
Q Consensus       126 g~~~~~~i~~fi~~~~~  142 (313)
                      |..+.+.|.+++.+..+
T Consensus        80 g~~d~~~L~~~L~~l~~   96 (100)
T d1wjka_          80 HRVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             SSCCHHHHHHHHHSSSC
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            78999999999987643

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.5e-05  Score=58.65  Aligned_cols=69  Identities=12%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             ccCCCccEEEEEeeC-CchhhhhHHHHHHHHh--ccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCC
Q 021368           46 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKS--FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD  118 (313)
Q Consensus        46 ~~~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~--~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~  118 (313)
                      ..++++++|.||++| ++|+.+.|.+.+....  ....+..+.||++...   .++..+...+ .+|++++++.++
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~---~~~~~~~~~~-~~Pt~~~~d~~G   93 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP---KDEDFSPDGG-YIPRILFLDPSG   93 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTCS-CSSEEEEECTTS
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCH---HHHHHHhhcc-cceeEEEECCCC
Confidence            456778899999999 9999999998765542  2245888899998743   5554332222 259999997654

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.74  E-value=2.7e-05  Score=58.05  Aligned_cols=68  Identities=12%  Similarity=0.060  Sum_probs=53.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCccc---------------------ccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDV---------------------GKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~---------------------~~~l~~~~~v  103 (313)
                      +++..+|.|++.| ++|+...|.+.++.+++.+  .+.++.|..+....                     ...+.+.|||
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            4567788899999 9999999999999999875  47778887664320                     1236788999


Q ss_pred             CCCCCcEEEEEcCC
Q 021368          104 TGEAPKVLAYTGND  117 (313)
Q Consensus       104 ~~~~~P~i~~~~~~  117 (313)
                      .+.  |++++++.+
T Consensus       107 ~~i--Pt~~lid~~  118 (144)
T d1i5ga_         107 KSI--PTLVGVEAD  118 (144)
T ss_dssp             CSS--SEEEEEETT
T ss_pred             CCc--CEEEEEeCC
Confidence            998  998888764

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.64  E-value=0.00014  Score=51.72  Aligned_cols=88  Identities=18%  Similarity=0.252  Sum_probs=69.6

Q ss_pred             ccEEEEEeeC---CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC
Q 021368           51 KNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE  127 (313)
Q Consensus        51 ~~~v~f~~~~---~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~  127 (313)
                      ++.+.+|..+   +.|+.+...++++|.-- +++.+...+.+... +..+++++||...  |++.+..++....+.|.|-
T Consensus        23 pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-dki~~~~~~~~~~e-~~~~~~~~~ver~--Ps~~i~~~g~~~gIrF~Gi   98 (119)
T d1a8la1          23 PVKLIVFVRKDHCQYCDQLKQLVQELSELT-DKLSYEIVDFDTPE-GKELAKRYRIDRA--PATTITQDGKDFGVRYFGL   98 (119)
T ss_dssp             CEEEEEEECSSSCTTHHHHHHHHHHHHTTC-TTEEEEEEETTSHH-HHHHHHHTTCCSS--SEEEEEETTBCCSEEEESC
T ss_pred             CEEEEEEecCCCchhHHHHHHHHHHHHhhC-CCeEEEEeccCcch-hhhHHHhhccccC--ceEEEecCCcccceEEEec
Confidence            4556667644   57999999999997765 45888888887654 6789999999988  9998888776666788998


Q ss_pred             CCHHHHHHHHHHHhc
Q 021368          128 LTLDKIKTFGEDFLE  142 (313)
Q Consensus       128 ~~~~~i~~fi~~~~~  142 (313)
                      ..-.++..||..++.
T Consensus        99 P~GhEf~SlilaIl~  113 (119)
T d1a8la1          99 PAGHEFAAFLEDIVD  113 (119)
T ss_dssp             CCTTHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHH
Confidence            888888888877653

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=97.63  E-value=5.5e-05  Score=56.23  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=53.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcc---------------------cccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNED---------------------VGKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~---------------------~~~~l~~~~~v  103 (313)
                      +++..+|.||+.| ++|+...|.+.++.+++..  .+.++.|..+...                     ....+.+.|||
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            4567788899999 9999999999999999954  4778887765432                     01246788999


Q ss_pred             CCCCCcEEEEEcCC
Q 021368          104 TGEAPKVLAYTGND  117 (313)
Q Consensus       104 ~~~~~P~i~~~~~~  117 (313)
                      .++  |++++++.+
T Consensus       107 ~~~--Pt~~lID~~  118 (144)
T d1o73a_         107 ESI--PTLITINAD  118 (144)
T ss_dssp             CSS--SEEEEEETT
T ss_pred             CcC--CEEEEEECC
Confidence            998  999898864

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.49  E-value=0.00015  Score=53.60  Aligned_cols=68  Identities=16%  Similarity=0.162  Sum_probs=53.6

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcc---------------------cccchhhhhCC
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNED---------------------VGKPVSEYFGI  103 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~---------------------~~~~l~~~~~v  103 (313)
                      .++.++|.|++.| ++|....|.+.+++.++..  .+.++.|+.++..                     ....+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            4567788899999 9999999999999999975  3777777765421                     12467889999


Q ss_pred             CCCCCcEEEEEcCC
Q 021368          104 TGEAPKVLAYTGND  117 (313)
Q Consensus       104 ~~~~~P~i~~~~~~  117 (313)
                      +++  |++++++.+
T Consensus       105 ~~~--Pt~~liD~~  116 (144)
T d1o8xa_         105 ESI--PTLIGVDAD  116 (144)
T ss_dssp             CSS--SEEEEEETT
T ss_pred             CcC--CEEEEEeCC
Confidence            998  999898765

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=7.9e-05  Score=52.63  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=65.2

Q ss_pred             ccccccCCCccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCce
Q 021368           42 APSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK  121 (313)
Q Consensus        42 ~~~~~~~~~~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~  121 (313)
                      ++.++......+|-||.+.  -......|.++|..+.+ +.|+.+...      .+++.+|+.   .|.|++|++.....
T Consensus        11 ~e~f~~~~~v~VVGfF~~~--~~~~~~~F~~~A~~~~d-~~F~~t~~~------~v~~~~~v~---~~~Ivl~k~~de~~   78 (110)
T d1bjxa_          11 AESLVESSEVAVIGFFKDV--ESDSAKQFLQAAEAIDD-IPFGITSNS------DVFSKYQLD---KDGVVLFKKFDEGR   78 (110)
T ss_dssp             HHHHHHHSSEEEEEECTTT--TSHHHHHHHHHHHHCSS-SCEEEECCS------HHHHHTTCS---SCEEEEEESSSSSB
T ss_pred             HHHHhccCCeEEEEEEcCC--CchHHHHHHHHHHhCcC-ceEEEECCH------HHHHHcCCC---CCeEEEeccCCccc
Confidence            4445555545555566542  33567788999999976 888886543      688999983   58998898866566


Q ss_pred             eccCCCCCHHHHHHHHHHHhc
Q 021368          122 HILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       122 ~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      ..|.|..+.+.|.+||....-
T Consensus        79 ~~~~~~~~~~~l~~fi~~~~~   99 (110)
T d1bjxa_          79 NNFEGEVTKENLLDFIKHNQL   99 (110)
T ss_dssp             CCCCSCCCHHHHHHHHHHHSS
T ss_pred             cccCCCCCHHHHHHHHHHcCc
Confidence            667899999999999998743

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00058  Score=47.93  Aligned_cols=95  Identities=13%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcC
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD  247 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~  247 (313)
                      ..+++++ ..+..++|-|+...   -......|.++|+.+++   +.|+... +......+++.. |+|++|+....  .
T Consensus         9 ~~~e~f~-~~~~v~VVGfF~~~---~~~~~~~F~~~A~~~~d---~~F~~t~-~~~v~~~~~v~~-~~Ivl~k~~de--~   77 (110)
T d1bjxa_           9 AAAESLV-ESSEVAVIGFFKDV---ESDSAKQFLQAAEAIDD---IPFGITS-NSDVFSKYQLDK-DGVVLFKKFDE--G   77 (110)
T ss_dssp             HHHHHHH-HHSSEEEEEECTTT---TSHHHHHHHHHHHHCSS---SCEEEEC-CSHHHHHTTCSS-CEEEEEESSSS--S
T ss_pred             HHHHHHh-ccCCeEEEEEEcCC---CchHHHHHHHHHHhCcC---ceEEEEC-CHHHHHHcCCCC-CeEEEeccCCc--c
Confidence            4555555 45677777777653   23567789999999853   6677644 333347788865 99999998665  4


Q ss_pred             ceeeccCcCHHHHHHHHHhcCCCCcc
Q 021368          248 PINVDVDRTVVALYKFLKKNASIPFK  273 (313)
Q Consensus       248 ~~~y~g~~~~~~l~~fi~~~~~~~~~  273 (313)
                      ...|.|..+.+.|.+||..+.-+-+.
T Consensus        78 ~~~~~~~~~~~~l~~fi~~~~~PlV~  103 (110)
T d1bjxa_          78 RNNFEGEVTKENLLDFIKHNQLPLVI  103 (110)
T ss_dssp             BCCCCSCCCHHHHHHHHHHHSSCCCS
T ss_pred             ccccCCCCCHHHHHHHHHHcCcCcEE
Confidence            45788899999999999999754443

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00012  Score=52.96  Aligned_cols=103  Identities=15%  Similarity=0.177  Sum_probs=76.6

Q ss_pred             EEcCcChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC-cCceEEEEe
Q 021368          164 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD-GFPTILFFP  240 (313)
Q Consensus       164 ~l~~~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~-~~P~i~~~~  240 (313)
                      +++.+++..++ ..+.+.+++|+.+.- .-..+...+.++|+++++  .+.|+.+|.+.+..  ..+++. ..|.+++..
T Consensus         4 ei~~~~~~~y~-~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkg--ki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~   79 (125)
T d2b5ea3           4 EIDGSVFAQYV-ESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRG--LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD   79 (125)
T ss_dssp             BCCHHHHHHHH-HTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTT--TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEE
T ss_pred             ccCHHHHHHHH-hcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcC--eeEEEEEchHHhHHHHHHcCCCccCCcEEEEe
Confidence            46778888887 467899999998653 346788999999999998  69999999876654  556664 589998876


Q ss_pred             CCCCCcCceee-------------ccCcCHHHHHHHHHhcCCCCc
Q 021368          241 AGNKSFDPINV-------------DVDRTVVALYKFLKKNASIPF  272 (313)
Q Consensus       241 ~g~~~~~~~~y-------------~g~~~~~~l~~fi~~~~~~~~  272 (313)
                      .....  ...+             .+..+.+.|.+|+.+.+.-++
T Consensus        80 ~~~~~--ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKl  122 (125)
T d2b5ea3          80 MTEDL--KYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDA  122 (125)
T ss_dssp             TTTTE--EEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCC
T ss_pred             cccCc--ccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCc
Confidence            44332  0111             356899999999999876544

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.40  E-value=0.00012  Score=55.20  Aligned_cols=92  Identities=9%  Similarity=0.019  Sum_probs=59.3

Q ss_pred             cCCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCC-
Q 021368          176 DESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKS-  230 (313)
Q Consensus       176 ~~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~v-  230 (313)
                      ..+|+++|.|| +.||+.|...++.+.++...+... .+.++.+..+....                       ..|++ 
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  106 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVY  106 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT-CCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCE
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhccccccccc-ccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCcc
Confidence            45788999998 899999999999999988888765 45555565443111                       22333 


Q ss_pred             ---------CcCceEEEEeCCCCCcCceee----ccCcCHHHHHHHHHhcCC
Q 021368          231 ---------DGFPTILFFPAGNKSFDPINV----DVDRTVVALYKFLKKNAS  269 (313)
Q Consensus       231 ---------~~~P~i~~~~~g~~~~~~~~y----~g~~~~~~l~~fi~~~~~  269 (313)
                               ...|+.++......+ ....+    .+..+.+++++-+++.++
T Consensus       107 ~~~~~~~~~~~~~~~flId~~G~I-~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         107 HEDLKGLKMVAKRAVFIVKPDGTV-AYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             EEEETTEEEEECCEEEEECTTSBE-EEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccceeeEEEEcCCCEE-EEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                     246888888544443 11111    123467888888877654

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.33  E-value=0.00057  Score=48.51  Aligned_cols=86  Identities=17%  Similarity=0.188  Sum_probs=64.9

Q ss_pred             CCCcEEEEEeC--CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcc----cccCCCCcCceEEEEeCCCCCcCcee
Q 021368          177 ESKDVLLEIYA--PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----HHRAKSDGFPTILFFPAGNKSFDPIN  250 (313)
Q Consensus       177 ~~k~~lv~fy~--~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~P~i~~~~~g~~~~~~~~  250 (313)
                      -.+++-+.++.  ..|..|..+...+.+++..-   +++.+...+.+...    ..++++...|++.++.+|..  ..++
T Consensus        20 l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS---dki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~--~gIr   94 (119)
T d1a8la1          20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT---DKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKD--FGVR   94 (119)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC---TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBC--CSEE
T ss_pred             CCCCEEEEEEecCCCchhHHHHHHHHHHHHhhC---CCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcc--cceE
Confidence            35666555554  46999999999999997652   26888777776643    26899999999999988765  4679


Q ss_pred             eccCcCHHHHHHHHHhc
Q 021368          251 VDVDRTVVALYKFLKKN  267 (313)
Q Consensus       251 y~g~~~~~~l~~fi~~~  267 (313)
                      |.|-+.-+++..||...
T Consensus        95 F~GiP~GhEf~SlilaI  111 (119)
T d1a8la1          95 YFGLPAGHEFAAFLEDI  111 (119)
T ss_dssp             EESCCCTTHHHHHHHHH
T ss_pred             EEeccCchhHHHHHHHH
Confidence            99977777788887654

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.32  E-value=0.00054  Score=47.26  Aligned_cols=92  Identities=10%  Similarity=0.131  Sum_probs=66.5

Q ss_pred             cChHHHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcC
Q 021368          168 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD  247 (313)
Q Consensus       168 ~~f~~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~  247 (313)
                      +.++.++...+..++|-|+...-   ......|.++|..++.  .+.|+... +.....++++. .|++++|++-..  .
T Consensus         8 ~e~~~F~~~~d~v~VvGfF~~~~---~~~~~~F~~~A~~~rd--~~~F~~t~-d~~va~~~~v~-~~~vvlfr~fde--~   78 (102)
T d1a8ya2           8 RELQAFENIEDEIKLIGYFKNKD---SEHYKAFKEAAEEFHP--YIPFFATF-DSKVAKKLTLK-LNEIDFYEAFME--E   78 (102)
T ss_dssp             HHHHHHTTCCSSCEEEEECSSTT---CHHHHHHHHHHHHHTT--TSCEEEEC-CHHHHHHHCCC-TTCEEEECTTCS--S
T ss_pred             HHHHHHhccCCCEEEEEEECCCC---cHHHHHHHHHHHHcCC--CceEEEEC-CHHHHHHcCCC-CCCEEEeeecCC--C
Confidence            34566654355677887776432   2467789999999987  57888644 33334778884 799999987554  5


Q ss_pred             ceeeccC-cCHHHHHHHHHhcC
Q 021368          248 PINVDVD-RTVVALYKFLKKNA  268 (313)
Q Consensus       248 ~~~y~g~-~~~~~l~~fi~~~~  268 (313)
                      ++.|.|. .+.+.|.+||.+|-
T Consensus        79 ~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          79 PVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             EEECSSSSCCHHHHHHHHHHTC
T ss_pred             ceecCCCCCCHHHHHHHHHHhc
Confidence            6789984 79999999999883

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.29  E-value=0.00058  Score=52.21  Aligned_cols=92  Identities=12%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc--ccccchhhhh----------------------
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE--DVGKPVSEYF----------------------  101 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~--~~~~~l~~~~----------------------  101 (313)
                      .++.+++.||++| ++|....+.+.++...+.+ .+.++.|..+..  +....+++++                      
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            4567788899999 9999999999999998875 355556654421  1122223333                      


Q ss_pred             -CCCCCCCcEEEEEcCCCCceeccCCC--CCHHHHHHHHHHHh
Q 021368          102 -GITGEAPKVLAYTGNDDAKKHILDGE--LTLDKIKTFGEDFL  141 (313)
Q Consensus       102 -~v~~~~~P~i~~~~~~~~~~~~~~g~--~~~~~i~~fi~~~~  141 (313)
                       ++.++  |+.++++.++.....+.|.  .+.+++.++|+..+
T Consensus       135 ~~v~~~--P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALGM--PTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSSS--SEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCC--CeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence             34445  8888887766444455564  35578888887765

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.23  E-value=0.00059  Score=51.82  Aligned_cols=88  Identities=11%  Similarity=0.086  Sum_probs=59.9

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~  228 (313)
                      .+|.++|+|| +.||+.|...++.|.+....++.. ++.+..+..+....                           ..|
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~-g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~y  121 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  121 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCCeEEEEEecCCCCcccccccccccccccccccc-CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHc
Confidence            3678888998 999999999999999999999875 46777676654211                           223


Q ss_pred             CC-----CcCceEEEEeCCCCCcCcee-ecc--CcCHHHHHHHHHh
Q 021368          229 KS-----DGFPTILFFPAGNKSFDPIN-VDV--DRTVVALYKFLKK  266 (313)
Q Consensus       229 ~v-----~~~P~i~~~~~g~~~~~~~~-y~g--~~~~~~l~~fi~~  266 (313)
                      ++     ...|+.++......+ +.+. +..  ..+.+++++.|..
T Consensus       122 gv~~~~~~~~r~~fvID~~G~I-~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPNNEI-QFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBE-EEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCCccCCccceeEEEEcCCCEE-EEEEEcCCCCCCCHHHHHHHHHH
Confidence            44     456888888544443 2222 222  3567888888765

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.22  E-value=0.00062  Score=46.93  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=64.9

Q ss_pred             ccccccCCC-ccEEEEEeeCCchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCc
Q 021368           42 APSVFESPI-KNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK  120 (313)
Q Consensus        42 ~~~~~~~~~-~~~v~f~~~~~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~  120 (313)
                      ++.++.... ..+|-||.+.  -......|.++|..+.+.+.|+....      ..+++++|+. .  |.+++|++-...
T Consensus        10 ~~~F~~~~d~v~VvGfF~~~--~~~~~~~F~~~A~~~rd~~~F~~t~d------~~va~~~~v~-~--~~vvlfr~fde~   78 (102)
T d1a8ya2          10 LQAFENIEDEIKLIGYFKNK--DSEHYKAFKEAAEEFHPYIPFFATFD------SKVAKKLTLK-L--NEIDFYEAFMEE   78 (102)
T ss_dssp             HHHHTTCCSSCEEEEECSST--TCHHHHHHHHHHHHHTTTSCEEEECC------HHHHHHHCCC-T--TCEEEECTTCSS
T ss_pred             HHHHhccCCCEEEEEEECCC--CcHHHHHHHHHHHHcCCCceEEEECC------HHHHHHcCCC-C--CCEEEeeecCCC
Confidence            344444333 3455577543  22367788999999988899998764      4799999994 4  888888876666


Q ss_pred             eeccCCC-CCHHHHHHHHHHH
Q 021368          121 KHILDGE-LTLDKIKTFGEDF  140 (313)
Q Consensus       121 ~~~~~g~-~~~~~i~~fi~~~  140 (313)
                      +..|.|. .+.++|.+||.+.
T Consensus        79 ~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          79 PVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             EEECSSSSCCHHHHHHHHHHT
T ss_pred             ceecCCCCCCHHHHHHHHHHh
Confidence            7888885 8999999999885

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00056  Score=52.72  Aligned_cols=86  Identities=20%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCC---------------CCcCceEEEEeC
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK---------------SDGFPTILFFPA  241 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~---------------v~~~P~i~~~~~  241 (313)
                      .+|++||.++|+||+.|.+..+.+.++.++|+.. ++.+..+.|.....++.+               ...-+++-++. 
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~-g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~~~~~~~~f~~~~-  100 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE-  100 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBC-
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhccc-ceeEEEeeccccccccccchhhhhhhhheeccccccccccccce-
Confidence            5899999999999999999889999999999875 588888888765432111               01112333321 


Q ss_pred             CCCCcCceeeccCcCHHHHHHHHHhcCCCC
Q 021368          242 GNKSFDPINVDVDRTVVALYKFLKKNASIP  271 (313)
Q Consensus       242 g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~  271 (313)
                            .+..+| .+...|.+|+.+..+..
T Consensus       101 ------ki~VnG-~~a~ply~~Lk~~~~~~  123 (184)
T d2f8aa1         101 ------KCEVNG-AGAHPLFAFLREALPAP  123 (184)
T ss_dssp             ------CCCCSS-TTCCHHHHHHHHHSCSC
T ss_pred             ------eeeecC-CCCCHHHHHHHhhCCCC
Confidence                  124445 45677999998886543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.02  E-value=0.00012  Score=55.62  Aligned_cols=78  Identities=6%  Similarity=-0.074  Sum_probs=53.5

Q ss_pred             eCCCccccccc-CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCC-CCcEEEE
Q 021368           37 FTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE-APKVLAY  113 (313)
Q Consensus        37 lt~~~~~~~~~-~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~-~~P~i~~  113 (313)
                      ++.+..+++.. .+...++.|+++| ++|++..|.+.+++..++. +.|..|+.+.   +......|..... ..|.+++
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~-~~~~~i~~d~---~~~~~~~~~~~~~~~~p~~~~  116 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN-IELAIISKGR---AEDDLRQRLALERIAIPLVLV  116 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT-EEEEEECHHH---HHHHTTTTTTCSSCCSSEEEE
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC-CcEEEEECcc---CHHHHHHHHHhccccccceee
Confidence            44444444333 3335567799999 9999999999999999886 7777888776   5577777744322 2377766


Q ss_pred             EcCCC
Q 021368          114 TGNDD  118 (313)
Q Consensus       114 ~~~~~  118 (313)
                      .+...
T Consensus       117 ~d~~~  121 (166)
T d1z6na1         117 LDEEF  121 (166)
T ss_dssp             ECTTC
T ss_pred             cCccc
Confidence            65543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.99  E-value=0.0015  Score=49.32  Aligned_cols=42  Identities=10%  Similarity=0.077  Sum_probs=33.1

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEe
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD  219 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd  219 (313)
                      .+..++.|....|++|..+.+.+..+...+.....+.+..+.
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   65 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecc
Confidence            355799999999999999999999998887654455555443

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.97  E-value=0.00054  Score=44.35  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=54.7

Q ss_pred             EEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceeecc-CcCHHHHH
Q 021368          183 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALY  261 (313)
Q Consensus       183 v~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~  261 (313)
                      |.+.++.|..|..+....++++..+.-  ...+..+. +....-+|++.++|++++  +|.-     .+.| -.+.++|.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi--~a~v~kv~-d~~ei~~ygVmstPalvI--dg~v-----v~~G~vPs~~ei~   73 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK-EMDQILEAGLTALPGLAV--DGEL-----KIMGRVASKEEIK   73 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC-SHHHHHHHTCSSSSCEEE--TTEE-----EECSSCCCHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCC--ceEEEEeC-CHHHHHHcCCcCCCEEEE--CCEE-----EEEecCCCHHHHH
Confidence            334589999999999999999988753  46666553 222225799999999999  5444     7888 46999999


Q ss_pred             HHHH
Q 021368          262 KFLK  265 (313)
Q Consensus       262 ~fi~  265 (313)
                      +||+
T Consensus        74 ~~L~   77 (77)
T d1iloa_          74 KILS   77 (77)
T ss_dssp             HHCC
T ss_pred             HHhC
Confidence            9873

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.91  E-value=0.00099  Score=42.96  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=45.0

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEEEeCCCCCcCceeeccCcC
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT  256 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~  256 (313)
                      ++.|..+||++|..+...+.+.        ++.+..+|++.+..     ...+..++|.+++  +|.       +.|+.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~--------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~-------~igGf~   65 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE-------HWSGFR   65 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE-------EEESCC
T ss_pred             EEEEeCCCChhHHHHHHHHHHc--------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCE-------EEeCCC
Confidence            5778899999999998877664        46667778877654     4568889998865  443       233355


Q ss_pred             HHHHHH
Q 021368          257 VVALYK  262 (313)
Q Consensus       257 ~~~l~~  262 (313)
                      .+.|.+
T Consensus        66 ~d~l~~   71 (74)
T d1r7ha_          66 PERIKQ   71 (74)
T ss_dssp             HHHHHH
T ss_pred             HhHHHH
Confidence            565554

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00058  Score=45.50  Aligned_cols=73  Identities=12%  Similarity=0.093  Sum_probs=51.3

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c------cCCCCcCceEEEEeCCCCCcCceeecc
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H------RAKSDGFPTILFFPAGNKSFDPINVDV  253 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~------~~~v~~~P~i~~~~~g~~~~~~~~y~g  253 (313)
                      +|.|..++|++|..+...+.++...+.+   +.+..+|.+.+..  .      ..++.++|.+++  +|.       +.|
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~-------~IG   70 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD---FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ-------HIG   70 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS---CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE-------EEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC---ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE-------EEE
Confidence            6788999999999999999999988875   5666666554432  1      124568999877  443       234


Q ss_pred             CcCHHHHHHHHHhcC
Q 021368          254 DRTVVALYKFLKKNA  268 (313)
Q Consensus       254 ~~~~~~l~~fi~~~~  268 (313)
                      +.  .+|.+++++++
T Consensus        71 G~--~el~~~~~~~~   83 (85)
T d1egoa_          71 GY--TDFAAWVKENL   83 (85)
T ss_dssp             SS--HHHHHHHHHHH
T ss_pred             CH--HHHHHHHHhcC
Confidence            33  46778877663

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00084  Score=50.24  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC----------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------------  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------------  222 (313)
                      +.+.+++.|..+.|++|+.+.+.+..+...     ++.+..+..-.                                  
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~-----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA   99 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc-----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccc
Confidence            457899999999999999999998887542     23332222110                                  


Q ss_pred             -----ccc-------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          223 -----NEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       223 -----~~~-------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                           ...       +.++++++|++++ .+|.      .+.|....+.|.++|.+.
T Consensus       100 ~~~~~~~i~~~~~la~~lgv~GTPt~~~-~nG~------~v~G~~~~e~l~~~i~~~  149 (156)
T d1eeja1         100 PASCDVDIADHYALGVQLGVSGTPAVVL-SNGT------LVPGYQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEEEC-TTSC------EEESCCCHHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHcCCcCCCEEEE-eCCe------EecCCCCHHHHHHHHHHH
Confidence                 000       3458999999654 4443      567889999999999875

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.80  E-value=0.002  Score=51.56  Aligned_cols=90  Identities=10%  Similarity=0.066  Sum_probs=63.4

Q ss_pred             cCCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------
Q 021368          176 DESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------  225 (313)
Q Consensus       176 ~~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------  225 (313)
                      ..++.++++|| +.||+.|......|.++...|+.. ++.+..+.++....                             
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va  105 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  105 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH
Confidence            35778888888 999999999999999999998765 57777777664210                             


Q ss_pred             ccCCC-------CcCceEEEEeCCCCCcCceeecc---CcCHHHHHHHHHhc
Q 021368          226 HRAKS-------DGFPTILFFPAGNKSFDPINVDV---DRTVVALYKFLKKN  267 (313)
Q Consensus       226 ~~~~v-------~~~P~i~~~~~g~~~~~~~~y~g---~~~~~~l~~fi~~~  267 (313)
                      ..|++       ...|++++......+ +.+.+..   .++.+++++.|...
T Consensus       106 k~yGv~~~~~~~~~~RatFIIDpdG~I-r~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         106 RRLGLLHAESATHTVRGVFIVDARGVI-RTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHTTCC----CCTTCCEEEEECTTSBE-EEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccccccccceeeeEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHHH
Confidence            23454       357888888555554 2332221   46889999988654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.69  E-value=0.00096  Score=50.49  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+|+++|+|| +.||+.|....+.|.++...++.. .+.+..++.+.
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~-~~~v~~is~d~   77 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI-NTEVISCSCDS   77 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSC
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcC-ceEEEeecCCc
Confidence            4678999999 999999999999999999999875 56667676654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.0014  Score=48.68  Aligned_cols=81  Identities=14%  Similarity=0.147  Sum_probs=55.5

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC----------------------------------
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------------------------------  222 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~----------------------------------  222 (313)
                      +.+.+++.|..+.|++|+.+.+.+..+....   ..+.+.......                                  
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~  101 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG---ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  101 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC---ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccch
Confidence            4577899999999999999999988886531   123333221110                                  


Q ss_pred             ---ccc-------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHHHhc
Q 021368          223 ---NEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN  267 (313)
Q Consensus       223 ---~~~-------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~  267 (313)
                         ...       +.++|+++|++++ .+|.      .+.|....+.|.++|.+-
T Consensus       102 ~~~~~i~~~~~la~~lGv~GTPt~~~-~nG~------~i~G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         102 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE------LIGGYLKPADLLRALEET  149 (150)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC------CCCSCCCHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHhcCcCCCCEEEE-cCCc------EecCCCCHHHHHHHHHhh
Confidence               000       3459999999776 3443      567888999999999764

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0045  Score=46.72  Aligned_cols=80  Identities=10%  Similarity=0.114  Sum_probs=55.4

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--------------------------------
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--------------------------------  225 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--------------------------------  225 (313)
                      .+.+++.|..+.|++|+.+.+.+..+....    .+.+..++......                                
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~  111 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  111 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccc
Confidence            456799999999999999999988876542    45666554432100                                


Q ss_pred             --------------------ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHHHHHHH
Q 021368          226 --------------------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL  264 (313)
Q Consensus       226 --------------------~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi  264 (313)
                                          ..+++.++|++++...+...   ..+.|....+.|.+-|
T Consensus       112 ~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~---~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         112 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL---QQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE---EEEESSCCHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE---EEecCCCCHHHHHHHh
Confidence                                12388999998887655433   3788887877766543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.005  Score=45.47  Aligned_cols=44  Identities=7%  Similarity=0.057  Sum_probs=32.0

Q ss_pred             CCCcEEEEEeCCCCc-cchhhhHHHHHHHHHhcCC---CcEEEEEEeC
Q 021368          177 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV---DSIVIAKMDG  220 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~~~---~~v~~~~vd~  220 (313)
                      .+|++||.||.+||+ .|..+...+..+...+...   ..+.+..+..
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISI   66 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEES
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhccccccccccccccc
Confidence            479999999999996 6988888888888776432   2344444443

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0011  Score=43.03  Aligned_cols=49  Identities=8%  Similarity=0.116  Sum_probs=38.6

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~  238 (313)
                      ++.|..+||+.|..+...|.+.        ++.+..+|++.+..     ...+..++|.+++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~--------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc--------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            5678899999999998877664        46677788887664     3457889999887

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=96.50  E-value=0.0025  Score=48.32  Aligned_cols=42  Identities=26%  Similarity=0.534  Sum_probs=32.7

Q ss_pred             CCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEE
Q 021368          177 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM  218 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v  218 (313)
                      +.++.+|.|....|++|+.+.+.+..+..++.....+....+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            357889999999999999999999998888765333444433

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.41  E-value=0.0051  Score=47.57  Aligned_cols=88  Identities=11%  Similarity=0.129  Sum_probs=61.4

Q ss_pred             CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------c
Q 021368          178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H  226 (313)
Q Consensus       178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------~  226 (313)
                      +|.++|+|| +.||+.|......|.++...|+.. ++.+..+..+....                              .
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~-g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccC-ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            678999999 999999999999999999999865 57777777664211                              1


Q ss_pred             cCCC------CcCceEEEEeCCCCCcCceeecc---CcCHHHHHHHHHhc
Q 021368          227 RAKS------DGFPTILFFPAGNKSFDPINVDV---DRTVVALYKFLKKN  267 (313)
Q Consensus       227 ~~~v------~~~P~i~~~~~g~~~~~~~~y~g---~~~~~~l~~fi~~~  267 (313)
                      .|++      ...|+.++......+ +.+.++.   .++.+++++.|...
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I-~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNL-RQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeE-EEEEEecCCCCcCHHHHHHHHHHh
Confidence            2233      245777777555444 2332222   46789999988764

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=96.32  E-value=0.0023  Score=48.31  Aligned_cols=45  Identities=13%  Similarity=0.174  Sum_probs=37.3

Q ss_pred             CCCcEEEEEeCC-CCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+|.++|+||.. ||+.|...++.|.++..+|+.. ++.+..+..+.
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~-g~~vv~IS~D~   75 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDT   75 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSC
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc-ceEEEeccccc
Confidence            367899999965 9999999999999999999764 57777777765

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.003  Score=47.05  Aligned_cols=44  Identities=7%  Similarity=0.122  Sum_probs=33.6

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .++.++++|| +.||+.|...++.|.+....|+.  .+.+..+..+.
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~d~   76 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSADS   76 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEESCC
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeeccch
Confidence            4566777777 89999999999999999999976  34455565544

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.96  E-value=0.005  Score=39.46  Aligned_cols=49  Identities=8%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~v~~~P~i~~  238 (313)
                      ++.|..++|+.|..+...+.+.        ++.+..+|++.+..     ...+..++|.+++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            6788999999999999888776        35566677766654     2346778999765

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.92  E-value=0.00068  Score=47.14  Aligned_cols=79  Identities=10%  Similarity=0.150  Sum_probs=47.6

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--c-----cCCCCcCceEEEEeCCCCCcCceeecc-
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H-----RAKSDGFPTILFFPAGNKSFDPINVDV-  253 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~-----~~~v~~~P~i~~~~~g~~~~~~~~y~g-  253 (313)
                      ++.|..+||++|......|..+.-.+.   .+.+..+|......  .     .-+..++|.+++  +|+.+.   .|.. 
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~---~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~~IG---G~~el   85 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKECIG---GCTDL   85 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTEEEE---SHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccc---eeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCEEEe---cHHHH
Confidence            778999999999999888877543222   36677676665432  1     125578999876  554332   2221 


Q ss_pred             --CcCHHHHHHHHHhcC
Q 021368          254 --DRTVVALYKFLKKNA  268 (313)
Q Consensus       254 --~~~~~~l~~fi~~~~  268 (313)
                        ......|.+.|++..
T Consensus        86 ~~l~~~G~L~~~L~~~G  102 (105)
T d1ktea_          86 ESMHKRGELLTRLQQVG  102 (105)
T ss_dssp             HHHHHHTHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHcC
Confidence              112235666666554

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=95.83  E-value=0.0042  Score=40.69  Aligned_cols=49  Identities=12%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEEE
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~~  238 (313)
                      +..|..+||++|..+...+.+.        ++.+..+|++.+..      ...+..++|.+++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            4568899999999998888765        45667778776654      2236778998865

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.76  E-value=0.0053  Score=45.35  Aligned_cols=43  Identities=16%  Similarity=0.151  Sum_probs=32.7

Q ss_pred             CcEEEEE-eCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          179 KDVLLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       179 k~~lv~f-y~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      ++++++| ++.||+.|....+.+.++...++.. ++.+..+..+.
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~-~~~vi~vs~d~   73 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGP   73 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCC
T ss_pred             CcEEEEecccccccchhhhhhhhhhhhhhhccc-ccccccccchh
Confidence            4555544 5899999999999998888888764 57777776665

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0061  Score=45.70  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=32.8

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+|+++|.|| +.||+.|...++.|.+++..+.   ++.+..|..+.
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~   86 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISADL   86 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESSC
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcCC
Confidence            3678888887 6799999999999998887664   46666666554

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=95.68  E-value=0.017  Score=36.90  Aligned_cols=70  Identities=11%  Similarity=0.031  Sum_probs=48.6

Q ss_pred             EEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCcCceEEEEeCCCCCcCceeeccCcCHHH
Q 021368          182 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA  259 (313)
Q Consensus       182 lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~v~~~P~i~~~~~g~~~~~~~~y~g~~~~~~  259 (313)
                      +.+|.+++|.-|..+...+.+    ..   .+.+..+|++.++.  .+|+. .+|.+.+  ++..     ......+.+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~---~~~~~~vdI~~d~~l~~~y~~-~IPVl~~--~~~~-----~l~w~fd~~~   66 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----AR---AGAFFSVFIDDDAALESAYGL-RVPVLRD--PMGR-----ELDWPFDAPR   66 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TT---CCCEEEEECTTCHHHHHHHTT-TCSEEEC--TTCC-----EEESCCCHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----cc---CCcEEEEEccCCHHHHHHhCC-eeeEEEE--CCee-----EEcCccCHHH
Confidence            567899999999877655432    11   36678889888765  67775 5897643  3332     3334579999


Q ss_pred             HHHHHHh
Q 021368          260 LYKFLKK  266 (313)
Q Consensus       260 l~~fi~~  266 (313)
                      |.+||..
T Consensus        67 l~~~L~~   73 (75)
T d1ttza_          67 LRAWLDA   73 (75)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999965

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.64  E-value=0.027  Score=42.12  Aligned_cols=92  Identities=13%  Similarity=0.192  Sum_probs=60.4

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc----------------------ccccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE----------------------DVGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~----------------------~~~~~l~~~~~v  103 (313)
                      ++..++.|| +.| +.|....+.|.+...+|... +.++.|..+..                      +.+..+++.|||
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv  123 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  123 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCC
Confidence            334555566 677 99999999999999999863 67777765431                      125678889998


Q ss_pred             C---CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          104 T---GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       104 ~---~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      .   +...|+.++++.++...+..    .-.+..+++.+.++.+
T Consensus       124 ~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         124 LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             BCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            3   22347777777655333322    1235677777777653

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.57  E-value=0.0076  Score=45.47  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=36.0

Q ss_pred             CCCcEEEEEeCCCCc-cchhhhHHHHHHHHHhcCC-CcEEEEEEeCC
Q 021368          177 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGT  221 (313)
Q Consensus       177 ~~k~~lv~fy~~~C~-~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~  221 (313)
                      .+|+++|.||.+||+ .|....+.+.++...+.+. ..+.+..+.++
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            478999999999996 6999999999998887542 25666666654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.014  Score=44.92  Aligned_cols=43  Identities=19%  Similarity=0.422  Sum_probs=29.4

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDG  220 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~  220 (313)
                      +++.++.|++-+|++|..+.+.+..+....+.. .++.|....+
T Consensus       113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~  156 (195)
T d1un2a_         113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV  156 (195)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEEC
T ss_pred             CCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEec
Confidence            567899999999999999999876554433321 1455554443

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.47  E-value=0.0087  Score=44.51  Aligned_cols=44  Identities=14%  Similarity=0.191  Sum_probs=36.0

Q ss_pred             CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      +|+++|+|| +.||+.|......+.++...+... +..+..|..+.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d~   70 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDS   70 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSC
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCcC
Confidence            678999999 899999999999999999988764 46666666554

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0077  Score=44.67  Aligned_cols=80  Identities=13%  Similarity=0.221  Sum_probs=53.8

Q ss_pred             EEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeC----------------------------------------CCc
Q 021368           53 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM----------------------------------------DNE   91 (313)
Q Consensus        53 ~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~----------------------------------------~~~   91 (313)
                      +++|+... +.|+++.+.+.++...   .+.+.++..                                        +..
T Consensus        30 Iv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (156)
T d1eeja1          30 ITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVD  106 (156)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcch
Confidence            44455455 9999999999988643   244443331                                        110


Q ss_pred             -ccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           92 -DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        92 -~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                       ..+..+.+.+||+++  |++ |+.+|.    .+.|.++.+.|.++|++...
T Consensus       107 i~~~~~la~~lgv~GT--Pt~-~~~nG~----~v~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1         107 IADHYALGVQLGVSGT--PAV-VLSNGT----LVPGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             HHHHHHHHHHHTCCSS--SEE-ECTTSC----EEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCC--CEE-EEeCCe----EecCCCCHHHHHHHHHHHHH
Confidence             015678899999999  997 444342    34789999999999988653

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=95.31  E-value=0.008  Score=45.34  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      +++++++|| +.||+.|....+.|.+....++.. ++.+..+..+.
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~   77 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDS   77 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSC
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccc
Confidence            457889999 999999999999999999998764 57777677654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.14  E-value=0.031  Score=40.90  Aligned_cols=81  Identities=14%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             ccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCC--------------------------------------C
Q 021368           51 KNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMD--------------------------------------N   90 (313)
Q Consensus        51 ~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~--------------------------------------~   90 (313)
                      ...|+.|++-  +.|+++.+.+.++..... .+.+......                                      +
T Consensus        27 k~~I~~FsD~~CPyC~~~~~~l~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~  105 (150)
T d1t3ba1          27 KHVVTVFMDITCHYCHLLHQQLKEYNDLGI-TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPN  105 (150)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHTTE-EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSS
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHhccCc-eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhh
Confidence            3445545554  999999999998876432 2433332211                                      0


Q ss_pred             c-ccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368           91 E-DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus        91 ~-~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      . ..+..+.+.+||+++  |++++ .+|.    .+.|....+.|.+.|++
T Consensus       106 ~i~~~~~la~~lGv~GT--Pt~~~-~nG~----~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         106 IVKKHYELGIQFGVRGT--PSIVT-STGE----LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             HHHHHHHHHHHHTCCSS--CEEEC-TTSC----CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcCCC--CEEEE-cCCc----EecCCCCHHHHHHHHHh
Confidence            0 014677899999999  99854 3332    45889999999999876

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.13  E-value=0.018  Score=42.49  Aligned_cols=96  Identities=13%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             cCCCccEEEEE-eeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCcc------------------cccchhhhhCCCC
Q 021368           47 ESPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGITG  105 (313)
Q Consensus        47 ~~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~~------------------~~~~l~~~~~v~~  105 (313)
                      .+++..++.|| +.| +.|....+.+.++..++.+. +.++.+..+...                  ....+++.||+..
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  107 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  107 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEE
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccc
Confidence            35556777777 778 99999999999999988863 555555533211                  1457778888732


Q ss_pred             --------CCCcEEEEEcCCCCceecc-----CCCCCHHHHHHHHHHHhc
Q 021368          106 --------EAPKVLAYTGNDDAKKHIL-----DGELTLDKIKTFGEDFLE  142 (313)
Q Consensus       106 --------~~~P~i~~~~~~~~~~~~~-----~g~~~~~~i~~fi~~~~~  142 (313)
                              ...|+.++++.++...+.+     .+..+.+++.+-+.++++
T Consensus       108 ~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             cccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                    1136666776655443332     234567888887777654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.59  E-value=0.074  Score=39.46  Aligned_cols=92  Identities=14%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhh
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE   99 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~   99 (313)
                      .++.+++.|| ..| +.|....+.|.++..+|.. .+.++.|..+...                         .+..+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            3446677787 888 9999999999999999997 4666777654310                         1345778


Q ss_pred             hhCCC----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHH
Q 021368          100 YFGIT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGED  139 (313)
Q Consensus       100 ~~~v~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~  139 (313)
                      .|++.    +...|+.++++.+....+.+    ...++.+++.+.++.
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            88873    22246666777665443332    123567787777654

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=94.10  E-value=0.044  Score=40.71  Aligned_cols=43  Identities=21%  Similarity=0.330  Sum_probs=32.8

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .+|+++|+|| +.||+.|...++.|.+...++++   +.+..+.++.
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~---~~vi~iS~d~   84 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN---TIVLCISADL   84 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT---EEEEEEESSC
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc---ceEEeecCCc
Confidence            3578888888 55788899999999998888863   5666666554

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.99  E-value=0.023  Score=42.26  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .++.++|.|| +.||+.|...++.+......+.   ++.+..+..+.
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~   84 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMDL   84 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESSC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEecc
Confidence            4678888888 7799999998888877666554   46666665553

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=93.98  E-value=0.025  Score=42.41  Aligned_cols=44  Identities=16%  Similarity=0.164  Sum_probs=37.1

Q ss_pred             CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      +++++|+|| +.||+.|......|.+....|+.. ++.+..|.++.
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~-g~~vigIS~D~   71 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDS   71 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSC
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC-CeeEecccCCc
Confidence            478999999 899999999999999999998765 57777777664

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.86  E-value=0.11  Score=32.98  Aligned_cols=71  Identities=17%  Similarity=0.160  Sum_probs=52.8

Q ss_pred             EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHH
Q 021368           54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLD  131 (313)
Q Consensus        54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~-~~~~  131 (313)
                      |.++.+. ..|.++....++++.++.-...+..|.  +   ..++. +|||-..  |++++-  +   ...+.|. .+.+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~--d---~~ei~-~ygVmst--PalvId--g---~vv~~G~vPs~~   70 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK--E---MDQIL-EAGLTAL--PGLAVD--G---ELKIMGRVASKE   70 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC--S---HHHHH-HHTCSSS--SCEEET--T---EEEECSSCCCHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEeC--C---HHHHH-HcCCcCC--CEEEEC--C---EEEEEecCCCHH
Confidence            3455777 899999999999999987567776663  3   34665 5999988  999662  1   3455665 5999


Q ss_pred             HHHHHH
Q 021368          132 KIKTFG  137 (313)
Q Consensus       132 ~i~~fi  137 (313)
                      +|.+|+
T Consensus        71 ei~~~L   76 (77)
T d1iloa_          71 EIKKIL   76 (77)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            999886

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.80  E-value=0.036  Score=42.19  Aligned_cols=89  Identities=11%  Similarity=0.059  Sum_probs=59.8

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRA  228 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~  228 (313)
                      .++.++|+|| +.||+.|......|.+...+|+.. ++.+..+.++....                           ..|
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~y  107 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHh
Confidence            3678999999 788999999999999999998764 56666666665321                           123


Q ss_pred             CCC------cCceEEEEeCCCCCcCceeecc---CcCHHHHHHHHHhc
Q 021368          229 KSD------GFPTILFFPAGNKSFDPINVDV---DRTVVALYKFLKKN  267 (313)
Q Consensus       229 ~v~------~~P~i~~~~~g~~~~~~~~y~g---~~~~~~l~~fi~~~  267 (313)
                      ++.      ..|+.++......+ +.+..+.   .++.+++++-|...
T Consensus       108 Gv~~~~~g~~~r~tfiID~~G~I-r~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         108 DNMREDEGLADRATFVVDPQGII-QAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCCcccCCcceeeEEEECchheE-EEEeecCCCcccCHHHHHHHHHHH
Confidence            432      34677777554444 2222222   46788888888764

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.69  E-value=0.14  Score=40.39  Aligned_cols=93  Identities=12%  Similarity=0.079  Sum_probs=62.0

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc------------------------ccccchhhh
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------------------------DVGKPVSEY  100 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~------------------------~~~~~l~~~  100 (313)
                      +++..+++|| ++| +.|..-.+.|.+++.+|.. .+.++.|.+++.                        +.+..+++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            3434444455 677 8999999999999999985 266676665531                        125678899


Q ss_pred             hCCCC-----CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          101 FGITG-----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       101 ~~v~~-----~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      |||..     ...|++++++.++...+.+    ...++.+++.+.|..+
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            99831     2247777887776443332    2357899999988654

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.61  E-value=0.033  Score=41.55  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=23.4

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHh
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHL  207 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~  207 (313)
                      .+++++|.|| +.||+.|...++.|.+....+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~   73 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS   73 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc
Confidence            4678999999 558888988888777665544

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.55  E-value=0.29  Score=33.07  Aligned_cols=85  Identities=18%  Similarity=0.264  Sum_probs=62.2

Q ss_pred             EEEEEeeC--CchhhhhHHHHHHHHhccC--eEEEEEEeCCCcccccchh----hhhCCCCCCCcEEEEEcCCCC--cee
Q 021368           53 QLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGITGEAPKVLAYTGNDDA--KKH  122 (313)
Q Consensus        53 ~v~f~~~~--~~c~~~~~~~~~~a~~~~~--~v~f~~vd~~~~~~~~~l~----~~~~v~~~~~P~i~~~~~~~~--~~~  122 (313)
                      .|..|+..  +.-.++.++++++|+.+..  .+.|+.||-+...   -+.    +-|||.-. -|.|.+.+-...  .-+
T Consensus        22 ~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FP---lm~~yWe~tF~IDl~-~PqIGVVdv~dadSvW~   97 (119)
T d1a8ya3          22 HIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFDIDLS-APQIGVVNVTDADSVWM   97 (119)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCT---TTHHHHHHHHTCCTT-SCEEEEEETTTCCEEEC
T ss_pred             eEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccc---hHHHHHHHhcCCCCC-CCceeeEecccCcceee
Confidence            44445555  7789999999999999886  5999999999854   444    67899877 699999876542  233


Q ss_pred             ccCC---CCCHHHHHHHHHHHh
Q 021368          123 ILDG---ELTLDKIKTFGEDFL  141 (313)
Q Consensus       123 ~~~g---~~~~~~i~~fi~~~~  141 (313)
                      ...+   ..+.+.+..|+.+.+
T Consensus        98 ~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          98 EMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             C-------CCHHHHHHHHHHHC
T ss_pred             ecccccccccHHHHHHHHHHhC
Confidence            3322   348999999998864

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.53  E-value=0.17  Score=34.06  Aligned_cols=83  Identities=10%  Similarity=0.018  Sum_probs=57.0

Q ss_pred             HHhhcCCCcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCCcCceee
Q 021368          172 EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINV  251 (313)
Q Consensus       172 ~~l~~~~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~~~~~~y  251 (313)
                      .++.+-.+++.+.++...|..|..+...+.++|..-   +++.+..-+        ......|++.+.++|..  ..++|
T Consensus        12 ~~f~~l~~~V~l~~~~~~~~~s~el~~~l~eva~lS---dkI~~~~~~--------~~~~r~Ps~~i~~~g~~--~gI~F   78 (102)
T d1hyua3          12 AYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELS---DKVTFKEDN--------TLPVRKPSFLITNPGSQ--QGPRF   78 (102)
T ss_dssp             HHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEECT--------TSSSCSSEEEEECTTCC--CSCEE
T ss_pred             HHHHhCCCCEEEEEEeCCChhHHHHHHHHHHHHhhC---CCeEEEEcC--------CCCCCCCeEEEecCCCE--eeeEE
Confidence            333344678888888888999999988888888642   256665322        12345799998877765  46799


Q ss_pred             ccCcCHHHHHHHHHhc
Q 021368          252 DVDRTVVALYKFLKKN  267 (313)
Q Consensus       252 ~g~~~~~~l~~fi~~~  267 (313)
                      .|-..-+++..||...
T Consensus        79 ~GiP~GhEF~Slilai   94 (102)
T d1hyua3          79 AGSPLGHEFTSLVLAL   94 (102)
T ss_dssp             ESCCCGGGHHHHHHHH
T ss_pred             ecCCCcccHHHHHHHH
Confidence            9977666666666554

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.50  E-value=0.14  Score=39.12  Aligned_cols=92  Identities=16%  Similarity=0.125  Sum_probs=63.5

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCc-------------------------ccccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE-------------------------DVGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~-------------------------~~~~~l~~~  100 (313)
                      ++.++++|| .+| +.|..-...|.++..+|.. .+.++.|.++..                         +....+++.
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~  112 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  112 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence            445566677 667 9999999999999999986 377777776531                         024678999


Q ss_pred             hCCCC----CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          101 FGITG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       101 ~~v~~----~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      ||+..    ...++.++++.++...+.+    .-.+..+++.+.+..+
T Consensus       113 ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         113 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            99942    2235566777665444432    3357889998888765

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.44  E-value=0.018  Score=42.56  Aligned_cols=53  Identities=11%  Similarity=0.130  Sum_probs=40.0

Q ss_pred             ccEEEE-E-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCC
Q 021368           51 KNQLLL-F-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        51 ~~~v~f-~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      .++++| | ..| +.|....+.|.+...+|...+.++.|..+....+..+++++++
T Consensus        34 ~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l   89 (156)
T d2a4va1          34 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNL   89 (156)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTC
T ss_pred             cEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCc
Confidence            445544 4 678 8999999999999999987666777776664436677778777

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.11  Score=38.53  Aligned_cols=81  Identities=9%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             ccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCc--c----------------------------------
Q 021368           51 KNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--D----------------------------------   92 (313)
Q Consensus        51 ~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~--~----------------------------------   92 (313)
                      +..|+.|.+.  ++|+++.+.++++....  ++.+..++..--  .                                  
T Consensus        37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  114 (169)
T d1v58a1          37 PVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  114 (169)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             CEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccc
Confidence            3445555555  99999999999887653  566666662110  0                                  


Q ss_pred             -----------cccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHH
Q 021368           93 -----------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTF  136 (313)
Q Consensus        93 -----------~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~f  136 (313)
                                 .+..+.+.+||+++  |++++.+.+ +......|..+.+.|..-
T Consensus       115 ~~~~~~~~~i~~n~~~a~~~gi~gT--Pt~i~~~~~-g~~~~~~G~~~~~~l~~i  166 (169)
T d1v58a1         115 NVSTEQMKVLSDNEKLMDDLGANVT--PAIYYMSKE-NTLQQAVGLPDQKTLNII  166 (169)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSS--CEEEEEETT-TEEEEEESSCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCC--CEEEEECCC-CCEEEecCCCCHHHHHHH
Confidence                       13567788999998  999776654 344456888888777553

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=93.29  E-value=0.085  Score=39.19  Aligned_cols=91  Identities=10%  Similarity=-0.034  Sum_probs=57.3

Q ss_pred             CCccEEEEEee-C-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc----------------------cccchhhhhCC
Q 021368           49 PIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~~~-~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~----------------------~~~~l~~~~~v  103 (313)
                      ++..++.||.. | +.|...++.|.++..+|.. .+.++.|.++...                      ....+++.||+
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv  110 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhCC
Confidence            34566668855 7 9999999999999999975 3666777765421                      24567788887


Q ss_pred             CC----CCCcEEEEEcCCCCceeccC----CCCCHHHHHHHHHH
Q 021368          104 TG----EAPKVLAYTGNDDAKKHILD----GELTLDKIKTFGED  139 (313)
Q Consensus       104 ~~----~~~P~i~~~~~~~~~~~~~~----g~~~~~~i~~fi~~  139 (313)
                      ..    ...|+.++++.++...+...    -.++.+++.+.+..
T Consensus       111 ~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka  154 (166)
T d1we0a1         111 LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA  154 (166)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             CccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence            42    22355666766654333321    12455666665544

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.18  Score=36.53  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=27.7

Q ss_pred             CeEEEcCcChHHHhhcCCCcEEEEEeCCCCcc-chhhhHHHHHHHHHh
Q 021368          161 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHL  207 (313)
Q Consensus       161 ~v~~l~~~~f~~~l~~~~k~~lv~fy~~~C~~-C~~~~~~~~~la~~~  207 (313)
                      .+...+++.+.-.-. .+|++||.||.+||.. |..+...+..+...+
T Consensus        10 ~l~d~~G~~vsl~~~-~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~   56 (169)
T d2b7ka1          10 HLEDMYGNEFTEKNL-LGKFSIIYFGFSNCPDICPDELDKLGLWLNTL   56 (169)
T ss_dssp             EEEETTSCEEEGGGG-TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCEECHHHH-CCCEEEEEEeccccCCcccchhhhhhhhhhhc
Confidence            344555555433222 5789999999999965 555555555444443

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.08  Score=40.58  Aligned_cols=88  Identities=13%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             CCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------c
Q 021368          178 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H  226 (313)
Q Consensus       178 ~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------~  226 (313)
                      ++.++|+|| ..||+.|......|.+....|+.. ++.+..+.++....                              .
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL-GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccC-CcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            678899999 899999999999999999999875 57777777664211                              1


Q ss_pred             cCCCC------cCceEEEEeCCCCCcCce-eecc--CcCHHHHHHHHHhc
Q 021368          227 RAKSD------GFPTILFFPAGNKSFDPI-NVDV--DRTVVALYKFLKKN  267 (313)
Q Consensus       227 ~~~v~------~~P~i~~~~~g~~~~~~~-~y~g--~~~~~~l~~fi~~~  267 (313)
                      .|++.      .+++.++......+ +.+ .+.-  .++..++++.|...
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~I-r~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVL-RQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCCCcE-EEEEecCCCcccCHHHHHHHHHhh
Confidence            12331      45667777554444 222 2222  46888898888776

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.29  E-value=0.85  Score=29.41  Aligned_cols=83  Identities=11%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             cChHHHhhcCC--CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCcCceEEEEeCCCCC
Q 021368          168 NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKS  245 (313)
Q Consensus       168 ~~f~~~l~~~~--k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~P~i~~~~~g~~~  245 (313)
                      ++++.++.+..  .+++|...-.    -..+...|.++|..+++  .+.|+..+..         ..-|.+-+|-.|..-
T Consensus         6 ~dl~~~l~n~t~v~pVVV~~Gv~----d~~fNeTF~~~A~~l~~--Dy~Fvs~~~~---------~~~~kLsV~LP~e~d   70 (98)
T d2b5ea2           6 ADLPAYLANETFVTPVIVQSGKI----DADFNATFYSMANKHFN--DYDFVSAENA---------DDDFKLSIYLPSAMD   70 (98)
T ss_dssp             SCHHHHHHHSCCSSCEEEEEESC----CHHHHHHHHHHHHHTTT--TCEEEEEECT---------TSCCEEEEEETTEEE
T ss_pred             hhhHHHHhcCcccCCEEEeCCcc----ccchhHHHHHHHHHhhc--ceEEEeccCC---------CCCccEEEECCCCCC
Confidence            45777777766  5899987632    15778889999999988  7899988855         344677777565433


Q ss_pred             cCceeeccCc----CHHHHHHHHHh
Q 021368          246 FDPINVDVDR----TVVALYKFLKK  266 (313)
Q Consensus       246 ~~~~~y~g~~----~~~~l~~fi~~  266 (313)
                       .|+.|.|..    +.+.|.+||+=
T Consensus        71 -EPIvf~G~~~~i~~a~~l~~WlkV   94 (98)
T d2b5ea2          71 -EPVVYNGKKADIADADVFEKWLQV   94 (98)
T ss_dssp             -EEEECCSCHHHHTSHHHHHHHHHH
T ss_pred             -CCeEEcCccCCcccHHHHHHHHee
Confidence             689999943    56779999964

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.95  E-value=1.1  Score=30.14  Aligned_cols=104  Identities=12%  Similarity=0.056  Sum_probs=74.8

Q ss_pred             eEEEcCcChHHHhhcCC-CcEEEEEeCCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-cC
Q 021368          162 VKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GF  233 (313)
Q Consensus       162 v~~l~~~~f~~~l~~~~-k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~-~~  233 (313)
                      ++.+..+++.+...+.- ...++.|--..-+.-.+|..+++++|+.+..++++.|+-||-+..+.      ..|+|. .-
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~   81 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSA   81 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTS
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCC
Confidence            46677888888775543 34555555555566789999999999999998899999999888775      345543 34


Q ss_pred             ceEEEEeCCCCCcCceeecc-----CcCHHHHHHHHHhc
Q 021368          234 PTILFFPAGNKSFDPINVDV-----DRTVVALYKFLKKN  267 (313)
Q Consensus       234 P~i~~~~~g~~~~~~~~y~g-----~~~~~~l~~fi~~~  267 (313)
                      |.+-+..-...  ..+-|.-     -.+.+.|..||.+.
T Consensus        82 PqIGVVdv~da--dSvW~~~~~~~d~~t~~~Le~WiedV  118 (119)
T d1a8ya3          82 PQIGVVNVTDA--DSVWMEMDDEEDLPSAEELEDWLEDV  118 (119)
T ss_dssp             CEEEEEETTTC--CEEECC-------CCHHHHHHHHHHH
T ss_pred             CceeeEecccC--cceeeecccccccccHHHHHHHHHHh
Confidence            99988876554  3344442     23789999999864

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=91.95  E-value=0.18  Score=37.45  Aligned_cols=90  Identities=13%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             ccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhhhC
Q 021368           51 KNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEYFG  102 (313)
Q Consensus        51 ~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~~~  102 (313)
                      ..+++|| ..| +.|..-.+.|.+...+|.+ .+.++.|..+...                         ....+++.||
T Consensus        35 ~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~yg  114 (170)
T d1zofa1          35 GVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYD  114 (170)
T ss_dssp             EEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTT
T ss_pred             EEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHHHcC
Confidence            3445566 677 9999999999999999975 3666666655421                         1457778888


Q ss_pred             CC---CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          103 IT---GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       103 v~---~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      +.   +...|+.++++.++...+..    ...+..+++.+.+..+
T Consensus       115 v~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         115 VLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             CEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             CCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            84   22235566666655333222    1235677777777654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=91.63  E-value=0.12  Score=38.21  Aligned_cols=54  Identities=11%  Similarity=0.154  Sum_probs=38.8

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v  103 (313)
                      ++..++.|| +.| +.|....+.|.+++.++.+ +.++.|..+....+..+++.+++
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d~~~~~~~~~~~~~~   99 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN-TVVLCISADLPFAQSRFCGAEGL   99 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT-EEEEEEESSCHHHHTTCCSSTTC
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhcc-ceeeeEEcCCHHHHHHHHHHhCC
Confidence            445666677 556 8899999999999999987 77777777653324455555555

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.18  Score=39.19  Aligned_cols=50  Identities=12%  Similarity=0.098  Sum_probs=38.4

Q ss_pred             hHHHhhcCCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          170 FDEIVLDESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       170 f~~~l~~~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      +.+++  .++.++++|| +.||+.|......|.+....|+.. ++.+..+.++.
T Consensus        21 Lsd~~--g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~-g~~v~giS~Ds   71 (220)
T d1prxa_          21 FHDFL--GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDS   71 (220)
T ss_dssp             HHHHH--TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSC
T ss_pred             eHHHc--CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc-cceeecccccc
Confidence            44443  3578888888 689999999999999999999875 56666666653

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.26  E-value=0.34  Score=36.46  Aligned_cols=93  Identities=10%  Similarity=-0.065  Sum_probs=60.6

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc----------------------cccchhhhhCC
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFGI  103 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~----------------------~~~~l~~~~~v  103 (313)
                      ++..+++|| ..| +.|..-.+.|++...+|.. .+.+..|.++...                      .+..+++.||+
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv  109 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhCC
Confidence            445555677 444 7799999999999999974 3666666654421                      24567778888


Q ss_pred             C----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHHh
Q 021368          104 T----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDFL  141 (313)
Q Consensus       104 ~----~~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~  141 (313)
                      .    +...|+.++++.++...+..    .-.++.+++.+.+..+.
T Consensus       110 ~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence            4    22235666776665433332    23578899999888654

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.93  E-value=0.51  Score=34.41  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=26.4

Q ss_pred             hhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021368           97 VSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED  139 (313)
Q Consensus        97 l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~  139 (313)
                      .++++||+++  |++++ + |    ..+.|..+.++|.++|++
T Consensus       138 ~a~~~gI~gT--Pt~~I-n-g----~~~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         138 EANAAHIQFV--PTIII-G-E----YIFDESVTEEELRGYIEK  172 (172)
T ss_dssp             HHHHHTCCSS--CEEEE-T-T----EEECTTCCHHHHHHHHTC
T ss_pred             HHHHcCCCcC--CEEEE-C-C----EEecCCCCHHHHHHHHcC
Confidence            3456899998  99865 2 2    146889999999998863

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.49  E-value=0.58  Score=34.14  Aligned_cols=91  Identities=10%  Similarity=0.120  Sum_probs=53.6

Q ss_pred             CCCccEEEEE-eeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcc--------------------cccchhhhhCCCC
Q 021368           48 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITG  105 (313)
Q Consensus        48 ~~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~--------------------~~~~l~~~~~v~~  105 (313)
                      .++..++.|| +.| +.|....+.+.+...++.+ +.++.|..+...                    ....+.+.||+..
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~  119 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN-TVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT-EEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcc-cceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeec
Confidence            3445666677 445 7799999999999999987 566666644321                    1235667777753


Q ss_pred             CCCc----EEEEEcCCCCceec-----cCCCCCHHHHHHHHHH
Q 021368          106 EAPK----VLAYTGNDDAKKHI-----LDGELTLDKIKTFGED  139 (313)
Q Consensus       106 ~~~P----~i~~~~~~~~~~~~-----~~g~~~~~~i~~fi~~  139 (313)
                      ...+    +.++++.++...|.     .....+.+++.+++..
T Consensus       120 ~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence            3222    34455554433222     1233466777777653

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=90.42  E-value=0.48  Score=29.77  Aligned_cols=69  Identities=13%  Similarity=0.202  Sum_probs=46.6

Q ss_pred             EEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHH
Q 021368           55 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKI  133 (313)
Q Consensus        55 ~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~i  133 (313)
                      +|..++ +-|......+.+    ..+ +.+..+|+++   ++.+..+||.+ .  |.+.+ +++..    ..-..+.+.+
T Consensus         4 Lyt~~~C~LCe~A~~~l~~----~~~-~~~~~vdI~~---d~~l~~~y~~~-I--PVl~~-~~~~~----l~w~fd~~~l   67 (75)
T d1ttza_           4 LYQRDDCHLCDQAVEALAQ----ARA-GAFFSVFIDD---DAALESAYGLR-V--PVLRD-PMGRE----LDWPFDAPRL   67 (75)
T ss_dssp             EEECSSCHHHHHHHHHHHH----TTC-CCEEEEECTT---CHHHHHHHTTT-C--SEEEC-TTCCE----EESCCCHHHH
T ss_pred             EECCCCccHHHHHHHHHHh----ccC-CcEEEEEccC---CHHHHHHhCCe-e--eEEEE-CCeeE----EcCccCHHHH
Confidence            344455 889888766543    223 6788999988   56999999985 5  97753 33321    2235799999


Q ss_pred             HHHHHH
Q 021368          134 KTFGED  139 (313)
Q Consensus       134 ~~fi~~  139 (313)
                      .+|+..
T Consensus        68 ~~~L~~   73 (75)
T d1ttza_          68 RAWLDA   73 (75)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998864

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.12  E-value=0.11  Score=35.57  Aligned_cols=64  Identities=14%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             ChHHHhhcCCCcEEEEEeC-----CCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCcCceEE
Q 021368          169 NFDEIVLDESKDVLLEIYA-----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTIL  237 (313)
Q Consensus       169 ~f~~~l~~~~k~~lv~fy~-----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~v~~~P~i~  237 (313)
                      .++.++  ++.+++| |..     |.|+.|..+..+|..+        .+.+..+|++....      ..-+-.++|.|+
T Consensus         7 ~i~~~i--~~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF   75 (109)
T d1wika_           7 GLKVLT--NKASVML-FMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY   75 (109)
T ss_dssp             CHHHHH--TTSSEEE-EESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHH--hcCCEEE-EeCCCCCCCCChHHHHHHHHHHhc--------CCCceEEEecccHHHHHHHHHhcCCCCCCeEE
Confidence            344544  3445555 533     7899999998887654        35566677776544      122556889887


Q ss_pred             EEeCCCCC
Q 021368          238 FFPAGNKS  245 (313)
Q Consensus       238 ~~~~g~~~  245 (313)
                      +  +|+.+
T Consensus        76 i--~g~~I   81 (109)
T d1wika_          76 V--RGDLV   81 (109)
T ss_dssp             C--SSSEE
T ss_pred             E--CCEEE
Confidence            6  55543

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.06  E-value=0.64  Score=33.76  Aligned_cols=92  Identities=17%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++.+++.|| +.| +.|..-.+.|+++..+|.. .+.+..|..+...                         ....+++.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  105 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  105 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence            446667788 566 9999999999999998875 3555555543210                         13457788


Q ss_pred             hCCCCC----CCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          101 FGITGE----APKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       101 ~~v~~~----~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      ||+...    ..++.++++.++...+.+    ...+..+++.+.+..+
T Consensus       106 ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkal  153 (158)
T d1zyea1         106 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  153 (158)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            888633    123455666655433332    2345778888888643

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=90.05  E-value=0.18  Score=37.19  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             CCccEEEEEeeC--CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCC
Q 021368           49 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT  104 (313)
Q Consensus        49 ~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~  104 (313)
                      ++..++.||..+  +.|....+.|.+...+|++ +.++.|.++....+.++++.+++.
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~~~   98 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEGIE   98 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTTCT
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhCCc
Confidence            446666688565  7799999999999999987 778888877643256777777764

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=89.98  E-value=0.39  Score=35.50  Aligned_cols=91  Identities=13%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             CccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhhh
Q 021368           50 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEYF  101 (313)
Q Consensus        50 ~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~~  101 (313)
                      ...+|+|| ..| +.|..-+..|.+.+.+|.. .+.++.|.++.-.                         ....+++.|
T Consensus        28 k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~y  107 (170)
T d2h01a1          28 KYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSY  107 (170)
T ss_dssp             CEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred             CeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHHh
Confidence            34555677 566 9999999999999999986 4778888876310                         124677888


Q ss_pred             CCCC---CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021368          102 GITG---EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF  140 (313)
Q Consensus       102 ~v~~---~~~P~i~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~  140 (313)
                      |+..   ...++.++++.++...+.+    .-.+..+++.+.|..+
T Consensus       108 gv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         108 DVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             TCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             CCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            8731   2234555666655443333    2234677888887664

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=89.35  E-value=0.42  Score=35.12  Aligned_cols=37  Identities=8%  Similarity=0.101  Sum_probs=28.4

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEe
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ   87 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd   87 (313)
                      +.+|.|+.-. ++|..+.+.+.++-.++.+.+.+..+.
T Consensus        20 ~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~   57 (181)
T d1beda_          20 PVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNH   57 (181)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             CEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEe
Confidence            4566666666 999999999999999998765555544

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=88.09  E-value=0.2  Score=31.32  Aligned_cols=68  Identities=15%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHH
Q 021368           54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDK  132 (313)
Q Consensus        54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~~~~  132 (313)
                      ++|..++ +.|.++...|.+.     + +.|..+|.++......+.+..|.+.+  |++.+ + +.     +-|....+.
T Consensus         4 ~iYt~~~C~~C~~ak~~L~~~-----~-i~~~~~~i~~~~~~~~~~~~~g~~tv--P~i~i-~-g~-----~igGf~~d~   68 (74)
T d1r7ha_           4 TLYTKPACVQCTATKKALDRA-----G-LAYNTVDISLDDEARDYVMALGYVQA--PVVEV-D-GE-----HWSGFRPER   68 (74)
T ss_dssp             EEEECTTCHHHHHHHHHHHHT-----T-CCCEEEETTTCHHHHHHHHHTTCBCC--CEEEE-T-TE-----EEESCCHHH
T ss_pred             EEEeCCCChhHHHHHHHHHHc-----C-CceEEEEccCCHHHHHHHHHhCCCCc--CEEEE-C-CE-----EEeCCCHhH
Confidence            3445566 9999999998763     3 66677788775435666788899888  98844 3 21     123455666


Q ss_pred             HHHH
Q 021368          133 IKTF  136 (313)
Q Consensus       133 i~~f  136 (313)
                      |.+.
T Consensus        69 l~~L   72 (74)
T d1r7ha_          69 IKQL   72 (74)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6553

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=1  Score=33.60  Aligned_cols=44  Identities=7%  Similarity=-0.030  Sum_probs=37.5

Q ss_pred             CCCccEEEEEeeC-CchhhhhHHHHHHHHhccCe-EEEEEEeCCCc
Q 021368           48 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE   91 (313)
Q Consensus        48 ~~~~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~-v~f~~vd~~~~   91 (313)
                      ++...+|.+++.| +.|.+..+.|+++.++|+++ +.+..+-|++.
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF   68 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF   68 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCS
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecccc
Confidence            4557778899999 99999999999999999864 88888888764

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=86.06  E-value=0.36  Score=31.03  Aligned_cols=75  Identities=9%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCccccc-chhhhh--CCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK-PVSEYF--GITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~-~l~~~~--~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ++|..++ +.|.++...|.++...+.+ +.+..+|.+...... .+.+..  +++.+  |.+ |+++.    +  -|.. 
T Consensus         4 viysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~tv--PqI-fi~g~----~--IGG~-   72 (85)
T d1egoa_           4 VIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETV--PQI-FVDQQ----H--IGGY-   72 (85)
T ss_dssp             EEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCS--CEE-EETTE----E--EESS-
T ss_pred             EEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCCCCCC--CEE-EECCE----E--EECH-
Confidence            4455555 9999999999999999998 777888765532122 222332  23445  988 44321    1  2322 


Q ss_pred             HHHHHHHHHHH
Q 021368          130 LDKIKTFGEDF  140 (313)
Q Consensus       130 ~~~i~~fi~~~  140 (313)
                       +++.+++.+-
T Consensus        73 -~el~~~~~~~   82 (85)
T d1egoa_          73 -TDFAAWVKEN   82 (85)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHhc
Confidence             4566666654

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=1.3  Score=33.37  Aligned_cols=92  Identities=17%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CCccEEEEE-eeC-CchhhhhHHHHHHHHhccC-eEEEEEEeCCCcc-------------------------cccchhhh
Q 021368           49 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY  100 (313)
Q Consensus        49 ~~~~~v~f~-~~~-~~c~~~~~~~~~~a~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~  100 (313)
                      ++.++++|| .+| +.|......|.+...+|.. .+.++.|.++...                         ....+++.
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~  113 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSED  113 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHH
Confidence            344555566 556 8999999999999999996 4777777765311                         24567778


Q ss_pred             hCCCC----CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHH
Q 021368          101 FGITG----EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDF  140 (313)
Q Consensus       101 ~~v~~----~~~P~i~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~  140 (313)
                      ||+..    ...++.++++.++...+.    ..-.+..+++.+.+..+
T Consensus       114 ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         114 YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            88742    223556666666543332    22347888888887665

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=0.35  Score=30.35  Aligned_cols=52  Identities=10%  Similarity=0.034  Sum_probs=36.2

Q ss_pred             EEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEE
Q 021368           54 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY  113 (313)
Q Consensus        54 v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~  113 (313)
                      ++|..++ +.|.++...|.+..      +.|..+|.+.........+..|.+.+  |++.+
T Consensus         4 ~iYs~~~C~~C~~ak~~L~~~~------i~y~~~~i~~~~~~~~~~~~~g~~tv--P~i~i   56 (76)
T d1h75a_           4 TIYTRNDCVQCHATKRAMENRG------FDFEMINVDRVPEAAEALRAQGFRQL--PVVIA   56 (76)
T ss_dssp             EEEECTTCHHHHHHHHHHHHTT------CCCEEEETTTCHHHHHHHHHTTCCSS--CEEEE
T ss_pred             EEEeCCCCccHHHHHHHHHhcC------ceeEEEeecCCHHHHHHHHhcCCCCC--CEEEE
Confidence            3445566 99999999987643      66677788774323445566798888  99855

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=85.44  E-value=0.43  Score=36.91  Aligned_cols=45  Identities=9%  Similarity=0.086  Sum_probs=37.8

Q ss_pred             CCCcEEEEEe-CCCCccchhhhHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021368          177 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT  222 (313)
Q Consensus       177 ~~k~~lv~fy-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~  222 (313)
                      .++.++++|| +.||+.|......|.+....|+.. ++.+..+.++.
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~-~~~vigiS~Ds   74 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNS   74 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSC
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc-ceEEEeecCcc
Confidence            4788899999 899999999999999999999875 57777777764

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.10  E-value=2.9  Score=29.41  Aligned_cols=95  Identities=8%  Similarity=0.039  Sum_probs=59.1

Q ss_pred             CCCccEEEEEeeC--CchhhhhHHHHHHHHhccC-----eEEEEEEeCCCcccc-------------------------c
Q 021368           48 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-----KLIFVYVQMDNEDVG-------------------------K   95 (313)
Q Consensus        48 ~~~~~~v~f~~~~--~~c~~~~~~~~~~a~~~~~-----~v~f~~vd~~~~~~~-------------------------~   95 (313)
                      .++.++|.|+..|  ..|....+.+.++...+..     .+.+..+..+...+.                         .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            4557788888888  5798888888888776542     244444443321101                         1


Q ss_pred             chhhhhCCCCC-------------CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021368           96 PVSEYFGITGE-------------APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE  142 (313)
Q Consensus        96 ~l~~~~~v~~~-------------~~P~i~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~  142 (313)
                      .+...|++...             +.+++++++.++.....|.+..+.+.|.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            23455554322             124566777665445556777888999988888764

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.11  E-value=0.89  Score=29.65  Aligned_cols=49  Identities=12%  Similarity=0.051  Sum_probs=33.3

Q ss_pred             EEEEeCCCCc------cchhhhHHHHHHHHHhcCCCcEEEEEEeCCCccc-----c---cCCCCcCceEEE
Q 021368          182 LLEIYAPWCG------HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----H---RAKSDGFPTILF  238 (313)
Q Consensus       182 lv~fy~~~C~------~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~---~~~v~~~P~i~~  238 (313)
                      ++.|++++|+      .|..+..++...        ++.+..+|++.+..     .   ..+...+|.+++
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~--------~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv   66 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN   66 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC--------CCceEEEEecCchhHHHHHHHhccCCCceeEEEEE
Confidence            5678999996      677776666654        57778889887654     1   123446788776

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=81.70  E-value=0.39  Score=35.69  Aligned_cols=44  Identities=18%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             CCcEEEEEeCCCCccchhhhHHHHHHHHHhcCC-CcEEEEEEeCC
Q 021368          178 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGT  221 (313)
Q Consensus       178 ~k~~lv~fy~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~  221 (313)
                      +++.+|.|++-.|++|+.+.+.+..+....... ..+.+..+...
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            456788999999999999998876555543321 24555555443

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.30  E-value=3.4  Score=27.32  Aligned_cols=76  Identities=12%  Similarity=0.028  Sum_probs=53.0

Q ss_pred             ccEEEEEeeC-CchhhhhHHHHHHHHhccCeEEEEEEeCCCcccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021368           51 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT  129 (313)
Q Consensus        51 ~~~v~f~~~~-~~c~~~~~~~~~~a~~~~~~v~f~~vd~~~~~~~~~l~~~~~v~~~~~P~i~~~~~~~~~~~~~~g~~~  129 (313)
                      ++.+.+|.+. ..|.++...++++|.--. ++.+..-+..             ....  |++.+...+....+.|.|-..
T Consensus        20 ~V~l~~~~~~~~~s~el~~~l~eva~lSd-kI~~~~~~~~-------------~~r~--Ps~~i~~~g~~~gI~F~GiP~   83 (102)
T d1hyua3          20 PVELIATLDDSAKSAEIKELLAEIAELSD-KVTFKEDNTL-------------PVRK--PSFLITNPGSQQGPRFAGSPL   83 (102)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCT-TEEEEECTTS-------------SSCS--SEEEEECTTCCCSCEEESCCC
T ss_pred             CEEEEEEeCCChhHHHHHHHHHHHHhhCC-CeEEEEcCCC-------------CCCC--CeEEEecCCCEeeeEEecCCC
Confidence            4445566666 778899999999887554 4766542211             1224  899888776666778899888


Q ss_pred             HHHHHHHHHHHhc
Q 021368          130 LDKIKTFGEDFLE  142 (313)
Q Consensus       130 ~~~i~~fi~~~~~  142 (313)
                      -.++..||..++.
T Consensus        84 GhEF~Slilail~   96 (102)
T d1hyua3          84 GHEFTSLVLALLW   96 (102)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             cccHHHHHHHHHh
Confidence            8888888887654