Citrus Sinensis ID: 021374

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MKMEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSHI
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccHHHHHHHHccccHHHHHHHccccHHHHHHHHccccccEEEEEcccccccHHHHHHHHccccccccEEEccccccccHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHccEEccccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcHcHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccHHccHHHHHHHHccccccEEEccccccccHHHHHHHHHcccccEEEccccHHccHHHHHHHHHHcccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MKMEEEKVKAAEEEetwsketvPKVIRIMSTRLSQRDIISLLLVspwlhrtlvsypslwLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKclgslqdleslnlngcqkisdKGIEIIsstcpelkvfSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLdlcgaqnlsdeGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGcssleflssgaemnccscshi
Flexible Loop (DISEMBL)
mkmeeekvkaaeeeetwsketvpkvIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSleflssgaemnccscshi
Low Complexity Region (SEG)
mkmeeekvkaaeeeeTWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSHI
Disordered region (IsUnstruct)
*********************VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCC*****
Disordered Region (DISOPRED)
*******************ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSHI
Disordered Region (DISEMBL)
******************KETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSHI
Disordered Region (DISPRO)
***********EEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKMEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSHI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q8LB33	353	F-box protein At3g58530 O	yes	no	0.872	0.773	0.713	1e-114
P34284	466	Uncharacterized F-box/LRR	yes	no	0.654	0.439	0.294	1e-20
Q96IG2	436	F-box/LRR-repeat protein	no	no	0.766	0.550	0.293	1e-19
Q58DG6	436	F-box/LRR-repeat protein	yes	no	0.766	0.550	0.293	1e-19
Q8BH16	423	F-box/LRR-repeat protein	yes	no	0.760	0.562	0.284	2e-19
Q9CZV8	436	F-box/LRR-repeat protein	no	no	0.603	0.433	0.287	4e-19
Q5R3Z8	423	F-box/LRR-repeat protein	yes	no	0.760	0.562	0.284	6e-19
Q9UKC9	423	F-box/LRR-repeat protein	no	no	0.760	0.562	0.284	7e-19
Q9QZH7	276	F-box/LRR-repeat protein	no	no	0.603	0.684	0.287	8e-19
A6H779	423	F-box/LRR-repeat protein	no	no	0.760	0.562	0.273	2e-18

>sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/279 (71%), Positives = 239/279 (85%)

Query: 22  VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIP 81
           V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+AALS+P
Sbjct: 19  VTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLAALSLP 78

Query: 82  RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 141
           RYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I+S CP+
Sbjct: 79  RYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPK 138

Query: 142 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
           LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LESLN+TR
Sbjct: 139 LKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITR 198

Query: 202 CVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL 261
           CVK+TD GL ++L KC SL++LNLYALSGFTD+AY KISLLA L+FLD+CGAQN+SDEG+
Sbjct: 199 CVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLADLRFLDICGAQNISDEGI 258

Query: 262 ACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             IAKC  L SLNLTWCVRITD GV  IA  C+SLEFLS
Sbjct: 259 GHIAKCNKLESLNLTWCVRITDAGVNTIANSCTSLEFLS 297

Arabidopsis thaliana (taxid: 3702)

>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 33/238 (13%)

Query: 91  LEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150
             F +D++   +E L  +C G L++L   +L GC+ + D  +   +S CP L+  S+Y  
Sbjct: 103 FTFQRDVKTAVVENLARRCGGFLKEL---SLKGCENVHDSALRTFTSRCPNLEHLSLYRC 159

Query: 151 VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGL 210
            RVTD   ++L + C  +  LNL  C ++ D++++ I D    L  LN++ C  + D G+
Sbjct: 160 KRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGV 219

Query: 211 QKILIKCSSLRSLNLYALSGFTDEAY----------KKISLLAHLKFLDLCGAQNLSDEG 260
           Q IL  C SL +L L    G T+  +          KK++LL   +  D+   QN+++  
Sbjct: 220 QIILSNCKSLDTLILRGCEGLTENVFGSVEAHMGAIKKLNLLQCFQLTDI-TVQNIANGA 278

Query: 261 LA----CIAKCK---------------NLVSLNLTWCVRITDVGVMAIAEGCSSLEFL 299
            A    C++ C                NL  L L+ C  + D G + +A GC  LE L
Sbjct: 279 TALEYLCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARGCRQLERL 336

Caenorhabditis elegans (taxid: 6239)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 125/273 (45%), Gaps = 33/273 (12%)

Query: 57  SLWLVIDLREMN-NAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQD 115
           S W  IDL +   +   R+V  +S      +R+++L     + D  L      C    ++
Sbjct: 63  SNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNC----RN 118

Query: 116 LESLNLNGCQKISDK--------------------------GIEIISSTCPELKVFSIYW 149
           +E LNLNGC K +D                            ++ +S  CP L+  +I W
Sbjct: 119 IEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISW 178

Query: 150 NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGG 209
             +VT  GIQ LV+ C  +  L L GC  L D++L+ I  +  EL +LNL  C+++TD G
Sbjct: 179 CDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEG 238

Query: 210 LQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACIAK-C 267
           L  I   C  L+SL     S  TD     +      L+ L++     L+D G   +A+ C
Sbjct: 239 LITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNC 298

Query: 268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             L  ++L  CV+ITD  ++ ++  C  L+ LS
Sbjct: 299 HELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 125/273 (45%), Gaps = 33/273 (12%)

Query: 57  SLWLVIDLREMN-NAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQD 115
           S W  IDL +   +   R+V  +S      +R+++L     + D  L      C    ++
Sbjct: 63  SNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNC----RN 118

Query: 116 LESLNLNGCQKISDK--------------------------GIEIISSTCPELKVFSIYW 149
           +E LNLNGC K +D                            ++ +S  CP L+  +I W
Sbjct: 119 IEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISW 178

Query: 150 NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGG 209
             +VT  GIQ LV+ C  +  L L GC  L D++L+ I  +  EL +LNL  C+++TD G
Sbjct: 179 CDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEG 238

Query: 210 LQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACIAK-C 267
           L  I   C  L+SL     S  TD     +      L+ L++     L+D G   +A+ C
Sbjct: 239 LITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNC 298

Query: 268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             L  ++L  CV+ITD  ++ ++  C  L+ LS
Sbjct: 299 HELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 33/271 (12%)

Query: 59  WLVIDLREM-NNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLE 117
           W  +DL     +   R+V  +S      +R+++L     + D  L+     C    +++E
Sbjct: 52  WQRVDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNC----RNIE 107

Query: 118 SLNLNGCQKISDK--------------------------GIEIISSTCPELKVFSIYWNV 151
            LNLNGC KI+D                            ++ IS  C  L+  ++ W  
Sbjct: 108 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCD 167

Query: 152 RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ 211
           ++T  GI+ LV+ C+ +  L L GC  L D++L+ I ++  EL SLNL  C ++TD G+ 
Sbjct: 168 QITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVV 227

Query: 212 KILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACIAK-CKN 269
           +I   C  L++L L   S  TD +   + L    L+ L+     +L+D G   +A+ C  
Sbjct: 228 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHE 287

Query: 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           L  ++L  CV ITD  ++ ++  C  L+ LS
Sbjct: 288 LEKMDLEECVLITDSTLVQLSIHCPKLQALS 318

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 27/216 (12%)

Query: 91  LEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150
            +F +DIE R +E +  +C G L+    L+L GC  + D  +   +  C  ++V S+   
Sbjct: 71  FDFQRDIEGRVVENISKRCGGFLR---KLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGC 127

Query: 151 VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGL 210
            + TD     L K C  +  L+L+ C ++ + SL+ +++    LE LN++ C ++T  G+
Sbjct: 128 TKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGI 187

Query: 211 QKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270
           Q ++  C  L++L L   +   DEA K I                         A C  L
Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIG------------------------AHCPEL 223

Query: 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN 306
           V+LNL  C++ITD G++ I  GC  L+ L +    N
Sbjct: 224 VTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSN 259

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 127/271 (46%), Gaps = 33/271 (12%)

Query: 59  WLVIDLREMN-NAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLE 117
           W  IDL     +   R+V  +S      +R+++L     + D  L+     C    +++E
Sbjct: 52  WQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNC----RNIE 107

Query: 118 SLNLNGCQKISDK--------------------------GIEIISSTCPELKVFSIYWNV 151
            LNLNGC KI+D                            ++ IS  C  L+  ++ W  
Sbjct: 108 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCD 167

Query: 152 RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ 211
           ++T  GI+ LV+ C+ +  L L GC  L D++L+ I +   EL SLNL  C ++TD G+ 
Sbjct: 168 QITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVV 227

Query: 212 KILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACIAK-CKN 269
           +I   C  L++L L   S  TD +   + L    L+ L+     +L+D G   +A+ C  
Sbjct: 228 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHE 287

Query: 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           L  ++L  C+ ITD  ++ ++  C  L+ LS
Sbjct: 288 LEKMDLEECILITDSTLIQLSIHCPKLQALS 318

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Pongo abelii (taxid: 9601)

>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 127/271 (46%), Gaps = 33/271 (12%)

Query: 59  WLVIDLREM-NNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLE 117
           W  IDL     +   R+V  +S      +R+++L     + D  L+     C    +++E
Sbjct: 52  WQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNC----RNIE 107

Query: 118 SLNLNGCQKISDK--------------------------GIEIISSTCPELKVFSIYWNV 151
            LNLNGC KI+D                            ++ IS  C  L+  ++ W  
Sbjct: 108 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCD 167

Query: 152 RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ 211
           ++T  GI+ LV+ C+ +  L L GC  L D++L+ I +   EL SLNL  C ++TD G+ 
Sbjct: 168 QITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVV 227

Query: 212 KILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACIAK-CKN 269
           +I   C  L++L L   S  TD +   + L    L+ L+     +L+D G   +A+ C  
Sbjct: 228 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHE 287

Query: 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           L  ++L  C+ ITD  ++ ++  C  L+ LS
Sbjct: 288 LEKMDLEECILITDSTLIQLSIHCPKLQALS 318

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication.

Homo sapiens (taxid: 9606)

>sp|Q9QZH7|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 27/216 (12%)

Query: 91  LEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN 150
            +F +DIE R +E +  +C G L+    L+L GC  + D  +   +  C  ++V S+   
Sbjct: 71  FDFQRDIEGRVVENISKRCGGFLR---KLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGC 127

Query: 151 VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGL 210
            + TD     L K C  +  L+L+ C ++ + SL+ +++    LE LN++ C ++T  G+
Sbjct: 128 TKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGI 187

Query: 211 QKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL 270
           Q ++  C  L++L L   +   DEA K I                         A C  L
Sbjct: 188 QALVRGCGGLKALFLKGCTQLEDEALKYIG------------------------AHCPEL 223

Query: 271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN 306
           V+LNL  C++ITD G++ I  GC  L+ L +    N
Sbjct: 224 VTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSN 259

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Rattus norvegicus (taxid: 10116)

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 33/271 (12%)

Query: 59  WLVIDLREM-NNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLE 117
           W  IDL     +   R+V  +S      +R+++L     + D  L+     C    +++E
Sbjct: 52  WQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNC----RNIE 107

Query: 118 SLNLNGCQKISDK--------------------------GIEIISSTCPELKVFSIYWNV 151
            LNLNGC KI+D                            ++ IS  C  L+  ++ W  
Sbjct: 108 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRHLEYLNLSWCD 167

Query: 152 RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ 211
           ++T  G++ LV+ C+ +  L L GC  L D++L+ I +   EL SLNL  C ++TD G+ 
Sbjct: 168 QITKDGVEALVRGCRGLRALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVV 227

Query: 212 KILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACIAK-CKN 269
           ++   C  L++L L      TD +   ++L    L+ L+     +L+D G   +A+ C +
Sbjct: 228 QLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCSHLTDAGFTLLARNCHD 287

Query: 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           L  ++L  C+ ITD  +  ++  C  L+ LS
Sbjct: 288 LEKMDLEECILITDRTLTQLSIHCPKLQALS 318

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
297739793	350	unnamed protein product [Vitis vinifera]	0.948	0.848	0.795	1e-137
225441543	353	PREDICTED: F-box protein At3g58530 [Viti	0.948	0.841	0.795	1e-136
224088164	341	predicted protein [Populus trichocarpa]	0.875	0.803	0.792	1e-133
255580692	351	ubiquitin-protein ligase, putative [Rici	0.942	0.840	0.751	1e-132
147789108	349	hypothetical protein VITISV_044261 [Viti	0.948	0.851	0.791	1e-131
297817168	353	hypothetical protein ARALYDRAFT_486305 [	0.948	0.841	0.721	1e-119
356530677	353	PREDICTED: F-box protein At3g58530-like	0.936	0.830	0.683	1e-114
18410977	353	F-box protein [Arabidopsis thaliana] gi|	0.872	0.773	0.713	1e-113
15450960	353	putative protein [Arabidopsis thaliana]	0.872	0.773	0.713	1e-113
388498858	357	unknown [Lotus japonicus]	0.920	0.806	0.665	1e-110

>gi|297739793|emb|CBI29975.3| unnamed protein product [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/298 (79%), Positives = 273/298 (91%), Gaps = 1/298 (0%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           MEE + +A  + + WS+ET+PKV+RI+ TRL QRD+ISLLLVSPW+HRTLVS  SLWLV+
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 VCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 183 SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242
           SLQLIADNY +LE LNLTRC+KLTDGGLQ+IL+KCSSL+SLNLYALS FTDEAYKKISLL
Sbjct: 180 SLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSFTDEAYKKISLL 239

Query: 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             L+FLDLCGAQNLSD+GL CIAKCKNLVSLNLTWCVR+TDVGV+AIA+GC+SLEFLS
Sbjct: 240 TDLRFLDLCGAQNLSDQGLCCIAKCKNLVSLNLTWCVRVTDVGVIAIAQGCTSLEFLS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441543|ref|XP_002276459.1| PREDICTED: F-box protein At3g58530 [Vitis vinifera]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/298 (79%), Positives = 273/298 (91%), Gaps = 1/298 (0%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           MEE + +A  + + WS+ET+PKV+RI+ TRL QRD+ISLLLVSPW+HRTLVS  SLWLV+
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 VCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 183 SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242
           SLQLIADNY +LE LNLTRC+KLTDGGLQ+IL+KCSSL+SLNLYALS FTDEAYKKISLL
Sbjct: 180 SLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSFTDEAYKKISLL 239

Query: 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             L+FLDLCGAQNLSD+GL CIAKCKNLVSLNLTWCVR+TDVGV+AIA+GC+SLEFLS
Sbjct: 240 TDLRFLDLCGAQNLSDQGLCCIAKCKNLVSLNLTWCVRVTDVGVIAIAQGCTSLEFLS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088164|ref|XP_002308350.1| predicted protein [Populus trichocarpa] gi|222854326|gb|EEE91873.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/285 (79%), Positives = 264/285 (92%)

Query: 16  TWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLV 75
           TW+ ET+PKV++I+ST+L QRD+ISLLLVSPWL+RTL S+P LW+ +D REMN AG+RL+
Sbjct: 1   TWNTETIPKVMKIVSTKLPQRDLISLLLVSPWLYRTLTSFPPLWMALDFREMNKAGDRLI 60

Query: 76  AALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135
           AA S+PRY+HV+EINLEFAQDIED HLE+L++KC  SLQ LESLNLNGCQKISDKGIE I
Sbjct: 61  AATSLPRYQHVKEINLEFAQDIEDEHLEVLQSKCFVSLQKLESLNLNGCQKISDKGIEAI 120

Query: 136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195
           +STC +LKVFSIYWNVRVTDIGI+H+V+NCK I+DLNLSGCKN+ DK+LQLIA+NYQELE
Sbjct: 121 TSTCSKLKVFSIYWNVRVTDIGIKHVVENCKQIVDLNLSGCKNISDKALQLIAENYQELE 180

Query: 196 SLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN 255
           SLNLTRC+KLTDGGLQ+IL KCSSL+SLNLYALS FTD+AYKKIS L+ LKFLDLCGAQN
Sbjct: 181 SLNLTRCIKLTDGGLQQILSKCSSLQSLNLYALSSFTDKAYKKISSLSLLKFLDLCGAQN 240

Query: 256 LSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           LSDEGL+CIAKCKN+VSLNLTWCVR+TDVG +AIAEGC+SLEFLS
Sbjct: 241 LSDEGLSCIAKCKNIVSLNLTWCVRVTDVGAVAIAEGCTSLEFLS 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580692|ref|XP_002531168.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223529238|gb|EEF31211.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/298 (75%), Positives = 270/298 (90%), Gaps = 3/298 (1%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           ME +KV   EEE+TWS+ET+PKV++I+ST +SQ+D+ISLLLVSPWLH +L+SYPSLWL +
Sbjct: 1   MERKKV---EEEQTWSRETIPKVMKIVSTTISQKDVISLLLVSPWLHHSLISYPSLWLAL 57

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D REMN AG+RL++ALS+PRYRHV++INLEFAQDIEDRHL+++++K   SLQ+LESLNLN
Sbjct: 58  DFREMNKAGDRLISALSLPRYRHVKQINLEFAQDIEDRHLQVIQSKASSSLQNLESLNLN 117

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
           GCQKISDKGIE I+S CP LKVFSIYWNVRVTD+GI+ LV+NCKHI+DLNLSGCKN+ DK
Sbjct: 118 GCQKISDKGIEAITSACPNLKVFSIYWNVRVTDVGIKQLVENCKHIVDLNLSGCKNISDK 177

Query: 183 SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242
           SLQL+AD YQ++E L+LTRC+KLTD GLQ+IL KCSSL+SLNLYALS FTD+AY+ IS L
Sbjct: 178 SLQLVADLYQDIELLDLTRCIKLTDDGLQQILSKCSSLKSLNLYALSTFTDKAYRNISNL 237

Query: 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           AHL+ LDLCGAQNLSDEGL+CIAKCKNL SLNLTWCVR+T+ GV+AIAEGC+ LEFLS
Sbjct: 238 AHLRILDLCGAQNLSDEGLSCIAKCKNLTSLNLTWCVRVTNAGVIAIAEGCTYLEFLS 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789108|emb|CAN73494.1| hypothetical protein VITISV_044261 [Vitis vinifera]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/298 (79%), Positives = 271/298 (90%), Gaps = 1/298 (0%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           MEE + +A  + + WS+ET+PKV+RI+ TRL QRD+ISLLLVSPW+HRTLVS  SLWLV+
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 XCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 183 SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242
           SLQLIADNY +LE LNLTRC KLTDGGLQ+IL+ CSSL+SLNLYALS FTDEAYKKISLL
Sbjct: 180 SLQLIADNYPDLELLNLTRCXKLTDGGLQQILLXCSSLQSLNLYALSSFTDEAYKKISLL 239

Query: 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             L+FLDLCGAQNLSD+GL CIAKCKNLVSLNLTWCVR+TDVGV+AIA+GC+SLEFLS
Sbjct: 240 TDLRFLDLCGAQNLSDQGLCCIAKCKNLVSLNLTWCVRVTDVGVIAIAQGCTSLEFLS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817168|ref|XP_002876467.1| hypothetical protein ARALYDRAFT_486305 [Arabidopsis lyrata subsp. lyrata] gi|297322305|gb|EFH52726.1| hypothetical protein ARALYDRAFT_486305 [Arabidopsis lyrata subsp. lyrata]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/298 (72%), Positives = 255/298 (85%), Gaps = 1/298 (0%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVI 62
           ME +KV   EEEE+W +E V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I
Sbjct: 1   MEAKKV-TEEEEESWRREIVTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLNI 59

Query: 63  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 122
           DLREM NAG+RL+AALS+PRYR V+ INLEFAQ + D HL+L+K +   +L  LE LNLN
Sbjct: 60  DLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKAEYPDALLSLECLNLN 119

Query: 123 GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 182
           GCQKISD GIE I+S CP+LKVFSIYWNVRVTD GI+HLVKNC+HIIDLNLSGCK+L DK
Sbjct: 120 GCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRHLVKNCRHIIDLNLSGCKSLTDK 179

Query: 183 SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL 242
           S+QL+A++YQ+LESL++TRCVK+TD GL ++L KCSSL++LNLYALSGFTD+AYKKISLL
Sbjct: 180 SMQLVAESYQDLESLDITRCVKITDDGLLQVLQKCSSLQTLNLYALSGFTDKAYKKISLL 239

Query: 243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             L+FLDLCGAQNLSDEGL  IAKC  L SLNLTWCVRITD GV+ IA  C+SLEFLS
Sbjct: 240 PDLRFLDLCGAQNLSDEGLGHIAKCNKLESLNLTWCVRITDAGVITIANSCTSLEFLS 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530677|ref|XP_003533907.1| PREDICTED: F-box protein At3g58530-like [Glycine max]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/297 (68%), Positives = 248/297 (83%), Gaps = 4/297 (1%)

Query: 8   VKAAEEEETWSKETVPKVIRIMST----RLSQRDIISLLLVSPWLHRTLVSYPSLWLVID 63
           ++   +E+ W +ETVPKV++++ +     LS  +++SLLLVSP LHRTL+    LW  ++
Sbjct: 1   MEGESKEDVWCRETVPKVLKLVCSTLPLSLSHTNLVSLLLVSPSLHRTLLCSQPLWQSLN 60

Query: 64  LREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG 123
            RE+NNAGNRL+AALS+PRY +V++INLEFA+D+ED HL L+  KC  SLQ LESLNLNG
Sbjct: 61  FRELNNAGNRLIAALSLPRYCNVKQINLEFARDVEDAHLILIMDKCFNSLQSLESLNLNG 120

Query: 124 CQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS 183
           CQKISD GIE I+S CP+LK FSIYWNVRVTD G+QH+VKNCKHIIDLN+SGCKN+ D+ 
Sbjct: 121 CQKISDTGIEAITSCCPQLKSFSIYWNVRVTDRGLQHIVKNCKHIIDLNISGCKNISDQG 180

Query: 184 LQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243
            QL+ADNY ELESLNLTRC+KLTD GL+ +L KC  L+SLNLYALS FTDEAY+KI LLA
Sbjct: 181 AQLVADNYPELESLNLTRCIKLTDDGLKSLLHKCLFLQSLNLYALSSFTDEAYRKICLLA 240

Query: 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
            LKFLDLCGAQNLSDE L+CI+KCKNL SLNLTWCVR+TD GV++IA+GC+SLEFLS
Sbjct: 241 RLKFLDLCGAQNLSDEALSCISKCKNLESLNLTWCVRVTDEGVISIAKGCTSLEFLS 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410977|ref|NP_567069.1| F-box protein [Arabidopsis thaliana] gi|75154905|sp|Q8LB33.1|FB330_ARATH RecName: Full=F-box protein At3g58530 gi|21593045|gb|AAM64994.1| unknown [Arabidopsis thaliana] gi|332646275|gb|AEE79796.1| F-box protein [Arabidopsis thaliana]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/279 (71%), Positives = 239/279 (85%)

Query: 22  VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIP 81
           V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+AALS+P
Sbjct: 19  VTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLAALSLP 78

Query: 82  RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 141
           RYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I+S CP+
Sbjct: 79  RYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPK 138

Query: 142 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
           LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LESLN+TR
Sbjct: 139 LKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITR 198

Query: 202 CVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL 261
           CVK+TD GL ++L KC SL++LNLYALSGFTD+AY KISLLA L+FLD+CGAQN+SDEG+
Sbjct: 199 CVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLADLRFLDICGAQNISDEGI 258

Query: 262 ACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             IAKC  L SLNLTWCVRITD GV  IA  C+SLEFLS
Sbjct: 259 GHIAKCNKLESLNLTWCVRITDAGVNTIANSCTSLEFLS 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15450960|gb|AAK96751.1| putative protein [Arabidopsis thaliana] gi|17978711|gb|AAL47349.1| putative protein [Arabidopsis thaliana]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/279 (71%), Positives = 239/279 (85%)

Query: 22  VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIP 81
           V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+AALS+P
Sbjct: 19  VTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLLAALSLP 78

Query: 82  RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE 141
           RYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I+S CP+
Sbjct: 79  RYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPK 138

Query: 142 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 201
           LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LESLN+TR
Sbjct: 139 LKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITR 198

Query: 202 CVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL 261
           CVK+TD GL ++L KC SL++LNLYALSGFTD+AY KISLLA L+FLD+CGAQN+SDEG+
Sbjct: 199 CVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLADLRFLDICGAQNISDEGI 258

Query: 262 ACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             IAKC  L SLNLTWCVRITD GV  IA  C+SLEFLS
Sbjct: 259 GHIAKCNKLGSLNLTWCVRITDAGVNTIANSCTSLEFLS 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498858|gb|AFK37495.1| unknown [Lotus japonicus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/290 (66%), Positives = 241/290 (83%), Gaps = 2/290 (0%)

Query: 13  EEETWSKETVPKVIRIMSTRL--SQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNA 70
           ++  W +ETVPKV +++ + L  +  D++SLLLVSP LHRTLVS   LW  +  RE+NNA
Sbjct: 12  KDHVWCRETVPKVFKLVCSTLPLAHTDLVSLLLVSPSLHRTLVSCQPLWQSLIFREVNNA 71

Query: 71  GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK 130
           GNRL+AALS+PRYR+V++I+LEFA+ +ED HL L+K KC  SLQ LESLNLNGCQKISD 
Sbjct: 72  GNRLLAALSLPRYRYVKQIDLEFARHVEDTHLILIKDKCFDSLQSLESLNLNGCQKISDT 131

Query: 131 GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190
           GIE I+S CP+LK FSIYWNVRVTD  + H V+NCKHI+DLN+SGCK + D+ +Q +A+N
Sbjct: 132 GIEAITSCCPQLKTFSIYWNVRVTDTSLLHTVRNCKHIVDLNISGCKQITDQGIQFVAEN 191

Query: 191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDL 250
           Y ELESLNLTRC+K+TD GL+ +L +C SL+SLNLYALS FTD AY++ISLL  LKFLDL
Sbjct: 192 YPELESLNLTRCIKVTDDGLKPLLHQCLSLQSLNLYALSSFTDAAYREISLLTRLKFLDL 251

Query: 251 CGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           CGAQNLSD+GL CI+KCK+LVSLNLTWCVR+TD GV+A+A+ C+SLEFLS
Sbjct: 252 CGAQNLSDQGLHCISKCKDLVSLNLTWCVRVTDEGVIAVAQCCTSLEFLS 301

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2076376	353	AT3G58530 [Arabidopsis thalian	0.910	0.807	0.708	1.1e-108
TAIR|locus:2166978	405	AT5G23340 [Arabidopsis thalian	0.696	0.538	0.282	1.6e-23
RGD|1562243	422	Fbxl2 "F-box and leucine-rich	0.680	0.504	0.305	6.8e-23
UNIPROTKB|F1PWK1	422	FBXL2 "Uncharacterized protein	0.680	0.504	0.305	8.8e-23
MGI|MGI:1919429	423	Fbxl2 "F-box and leucine-rich	0.680	0.503	0.305	8.9e-23
UNIPROTKB|F1NHD2	423	FBXL2 "Uncharacterized protein	0.677	0.501	0.293	1.2e-22
UNIPROTKB|Q9UKC9	423	FBXL2 "F-box/LRR-repeat protei	0.680	0.503	0.305	2e-22
UNIPROTKB|Q5R3Z8	423	FBXL2 "F-box/LRR-repeat protei	0.680	0.503	0.305	2e-22
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.680	0.488	0.315	4e-22
UNIPROTKB|Q96IG2	436	FBXL20 "F-box/LRR-repeat prote	0.680	0.488	0.315	4e-22

TAIR|locus:2076376 AT3G58530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 202/285 (70%), Positives = 243/285 (85%)

Query:    16 TWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLV 75
             TW +E V  V+R++STRL Q D+ISLLLVSPWL+RTL+SYPS+WL I+LREM NAG+RL+
Sbjct:    13 TWRREIVTSVMRLVSTRLPQTDLISLLLVSPWLYRTLISYPSIWLTINLREMTNAGDRLL 72

Query:    76 AALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII 135
             AALS+PRYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNLN CQKISD GIE I
Sbjct:    73 AALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAI 132

Query:   136 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195
             +S CP+LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L DKS+QL+A++Y +LE
Sbjct:   133 TSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLE 192

Query:   196 SLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN 255
             SLN+TRCVK+TD GL ++L KC SL++LNLYALSGFTD+AY KISLLA L+FLD+CGAQN
Sbjct:   193 SLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLADLRFLDICGAQN 252

Query:   256 LSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             +SDEG+  IAKC  L SLNLTWCVRITD GV  IA  C+SLEFLS
Sbjct:   253 ISDEGIGHIAKCNKLESLNLTWCVRITDAGVNTIANSCTSLEFLS 297

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 65/230 (28%), Positives = 123/230 (53%)

Query:    83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPEL 142
             ++ +R +NL   + I D  L  +  +CL  LQ L+   ++ C+K+SDKG+  ++  C +L
Sbjct:    97 FKFLRVLNLHNCKGITDTGLASIG-RCLSLLQFLD---VSYCRKLSDKGLSAVAEGCHDL 152

Query:   143 KVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRC 202
             +   +     +TD  ++ L + C+ +  L L GC N+ D  L  +    ++++SL++ +C
Sbjct:   153 RALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKC 212

Query:   203 VKLTDGGLQKILIKC-SSLRSLNLYALSGFTDEAYKKISLLA-HLKFLDLCGAQNLSDEG 260
               + D G+  +   C SSL++L L       +E+   ++    +L+ L + G +++SDE 
Sbjct:   213 SNVGDAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDES 272

Query:   261 LACIA-KCKN-LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCC 308
             +  +A  CK+ L +L + WC+ I+D  +  I + C +LE L  G    CC
Sbjct:   273 IMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQCKNLEALDIG----CC 318

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 267 (99.0 bits), Expect = 6.8e-23, P = 6.8e-23
 Identities = 67/219 (30%), Positives = 113/219 (51%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             R++  +NL     I D     L   C      L+ L+L  C  +++  ++ IS  C  L+
Sbjct:   103 RNIEHLNLNGCTKITDSTCYSLSRFC----SKLKHLDLTSCVSVTNSSLKGISEGCRNLE 158

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203
               ++ W  ++T  GI+ LV+ C+ +  L L GC  L D++L+ I ++  EL SLNL  C 
Sbjct:   159 YLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCS 218

Query:   204 KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLA 262
             ++TD G+ +I   C  L++L L   S  TD +   + L    L+ L+     +L+D G  
Sbjct:   219 RITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFT 278

Query:   263 CIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
              +A+ C +L  ++L  CV ITD  ++ ++  C  L+ LS
Sbjct:   279 LLARNCHDLEKMDLEECVLITDSTLIQLSIHCPKLQALS 317

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 266 (98.7 bits), Expect = 8.8e-23, P = 8.8e-23
 Identities = 67/219 (30%), Positives = 113/219 (51%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             R++  +NL     I D     L   C      L+ L+L  C  I++  ++ IS  C  L+
Sbjct:   103 RNIEHLNLNGCTKITDSTCYSLSRFC----SKLKHLDLTSCVSITNSSLKGISEGCRNLE 158

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203
               ++ W  ++T  GI+ LV+ C+ +  L L GC  L D++L+ I +   EL SLNL  C 
Sbjct:   159 YLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCS 218

Query:   204 KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLA 262
             ++TD G+ +I   C  L++L L   S  TD +   ++L    L+ L+     +L+D G  
Sbjct:   219 RITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALALNCPRLQILEAARCSHLTDAGFT 278

Query:   263 CIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
              +A+ C +L  ++L  C+ ITD  ++ ++  C  L+ LS
Sbjct:   279 LLARNCHDLEKMDLEECILITDSTLIQLSVHCPKLQALS 317

GO:0016020 "membrane" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 8.9e-23, P = 8.9e-23
 Identities = 67/219 (30%), Positives = 112/219 (51%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             R++  +NL     I D     L   C      L+ L+L  C  +++  ++ IS  C  L+
Sbjct:   104 RNIEHLNLNGCTKITDSTCYSLSRFC----SKLKHLDLTSCVSVTNSSLKGISEGCRNLE 159

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203
               ++ W  ++T  GI+ LV+ C+ +  L L GC  L D++L+ I ++  EL SLNL  C 
Sbjct:   160 YLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCS 219

Query:   204 KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLA 262
             ++TD G+ +I   C  L++L L   S  TD +   + L    L+ L+     +L+D G  
Sbjct:   220 RITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFT 279

Query:   263 CIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
              +A+ C  L  ++L  CV ITD  ++ ++  C  L+ LS
Sbjct:   280 LLARNCHELEKMDLEECVLITDSTLVQLSIHCPKLQALS 318

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0006513 "protein monoubiquitination" evidence=IGI;IMP

GO:0016020 "membrane" evidence=ISO

UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 64/218 (29%), Positives = 114/218 (52%)

Query:    87 REINL-EFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVF 145
             ++I+L  F  DIE R +E +  +C G L+ L   +L GC  + D  ++  +  C  ++  
Sbjct:    53 QKIDLFNFQTDIEGRVVENISKRCGGFLRQL---SLRGCHVVGDSSLKTFAQNCRNIEHL 109

Query:   146 SIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKL 205
             ++    ++TD     L + C  +  L+L+ C  + + SL+ +++  + LE LNL+ C ++
Sbjct:   110 NLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVAITNSSLKGLSEGCRNLEHLNLSWCDQI 169

Query:   206 TDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH-LKFLDLCGAQNLSDEGLACI 264
             T  G++ ++  CS L++L L   +   DEA K I    H L  L+L     +SDEG+  I
Sbjct:   170 TKDGIEALVKGCSGLKALFLRGCTQLEDEALKHIQNHCHELAILNLQSCTQISDEGIVKI 229

Query:   265 AK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSS 301
              + C  L SL ++ C  +TD  + A+   C  L+ L +
Sbjct:   230 CRGCHRLQSLCVSGCCNLTDASLTALGLNCPRLKILEA 267

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 67/219 (30%), Positives = 111/219 (50%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             R++  +NL     I D     L   C      L+ L+L  C  I++  ++ IS  C  L+
Sbjct:   104 RNIEHLNLNGCTKITDSTCYSLSRFC----SKLKHLDLTSCVSITNSSLKGISEGCRNLE 159

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203
               ++ W  ++T  GI+ LV+ C+ +  L L GC  L D++L+ I +   EL SLNL  C 
Sbjct:   160 YLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCS 219

Query:   204 KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLA 262
             ++TD G+ +I   C  L++L L   S  TD +   + L    L+ L+     +L+D G  
Sbjct:   220 RITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFT 279

Query:   263 CIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
              +A+ C  L  ++L  C+ ITD  ++ ++  C  L+ LS
Sbjct:   280 LLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALS 318

GO:0005516 "calmodulin binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]

 Score = 263 (97.6 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 67/219 (30%), Positives = 111/219 (50%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             R++  +NL     I D     L   C      L+ L+L  C  I++  ++ IS  C  L+
Sbjct:   104 RNIEHLNLNGCTKITDSTCYSLSRFC----SKLKHLDLTSCVSITNSSLKGISEGCRNLE 159

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203
               ++ W  ++T  GI+ LV+ C+ +  L L GC  L D++L+ I +   EL SLNL  C 
Sbjct:   160 YLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCS 219

Query:   204 KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLA 262
             ++TD G+ +I   C  L++L L   S  TD +   + L    L+ L+     +L+D G  
Sbjct:   220 RITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFT 279

Query:   263 CIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
              +A+ C  L  ++L  C+ ITD  ++ ++  C  L+ LS
Sbjct:   280 LLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALS 318

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 4.0e-22, P = 4.0e-22
 Identities = 69/219 (31%), Positives = 107/219 (48%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             R++  +NL       D     L   C      L  L+L  C  I++  ++ +S  CP L+
Sbjct:   117 RNIEVLNLNGCTKTTDATCTSLSKFC----SKLRHLDLASCTSITNMSLKALSEGCPLLE 172

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203
               +I W  +VT  GIQ LV+ C  +  L L GC  L D++L+ I  +  EL +LNL  C+
Sbjct:   173 QLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCL 232

Query:   204 KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLA 262
             ++TD GL  I   C  L+SL     S  TD     +      L+ L++     L+D G  
Sbjct:   233 QITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFT 292

Query:   263 CIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
              +A+ C  L  ++L  CV+ITD  ++ ++  C  L+ LS
Sbjct:   293 TLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 4.0e-22, P = 4.0e-22
 Identities = 69/219 (31%), Positives = 107/219 (48%)

Query:    84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             R++  +NL       D     L   C      L  L+L  C  I++  ++ +S  CP L+
Sbjct:   117 RNIEVLNLNGCTKTTDATCTSLSKFC----SKLRHLDLASCTSITNMSLKALSEGCPLLE 172

Query:   144 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV 203
               +I W  +VT  GIQ LV+ C  +  L L GC  L D++L+ I  +  EL +LNL  C+
Sbjct:   173 QLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCL 232

Query:   204 KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLA 262
             ++TD GL  I   C  L+SL     S  TD     +      L+ L++     L+D G  
Sbjct:   233 QITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFT 292

Query:   263 CIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
              +A+ C  L  ++L  CV+ITD  ++ ++  C  L+ LS
Sbjct:   293 TLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLS 331

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LB33	FB330_ARATH	No assigned EC number	0.7132	0.8722	0.7733	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025432001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (353 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	2e-14
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	6e-09
smart00367	26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	3e-04

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 31/181 (17%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII 169
           L +   L+ L L G + I D+G+  ++ +CP L+V  +     +TD GI  L  NC  + 
Sbjct: 48  LSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQ 107

Query: 170 DLNLS---GCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLY 226
            +NL        + D SL  +  N   L+++    C  +TD G+ ++   CS        
Sbjct: 108 TINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSK------- 159

Query: 227 ALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAK---CKNLVSLNLTWCVRITD 283
                             L+ L L   +NL+D+ +  I       NL  L    C  ITD
Sbjct: 160 -----------------SLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202

Query: 284 V 284
            
Sbjct: 203 F 203

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL 199
           P L +      +  ++I  Q L      +  L L  C        QL   N  +L+ L L
Sbjct: 3   PLLFILHKLGQITQSNIS-QLLRILHSGLEWLELYMCPISDPPLDQLS--NCNKLKKLIL 59

Query: 200 TRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-LAHLKFLDLCGAQN--- 255
                + D GL  +   C +L+ L+L A    TD     ++     L+ ++L   +N   
Sbjct: 60  PGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHL 119

Query: 256 LSDEGL-ACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS-SLEFLSSGAEMNCC 308
           ++D  L A    C  L ++    C  +TD GV  +A GCS SLE LS    +N C
Sbjct: 120 ITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLS----LNNC 169

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 267 CKNLVSLNLTWCVRITDVGVMAIAEG 292
           C NL  L+L+ C  ITD G+ A+A+G
Sbjct: 1   CPNLRELDLSGCTNITDEGLQALAKG 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG4341	483	consensus F-box protein containing LRR [General fu	99.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.95
KOG4341	483	consensus F-box protein containing LRR [General fu	99.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.45
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.38
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.37
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.26
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.23
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	99.09
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	99.02
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.95
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.81
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.67
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.52
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.3
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.27
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.25
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.0
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.98
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.98
PLN03150	623	hypothetical protein; Provisional	97.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.37
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.28
PLN03150	623	hypothetical protein; Provisional	97.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.24
KOG4308	478	consensus LRR-containing protein [Function unknown	97.2
KOG4308	478	consensus LRR-containing protein [Function unknown	97.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.87
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.77
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.63
PRK15386	426	type III secretion protein GogB; Provisional	96.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.23
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.85
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.61
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.33
PRK15386	426	type III secretion protein GogB; Provisional	95.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.1
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.68
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.46
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.45
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.42
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.26
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.08
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.71
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.82
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.59
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	83.11

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.97  E-value=2.5e-31  Score=215.42  Aligned_cols=288  Identities=25%  Similarity=0.411  Sum_probs=199.1

Q ss_pred             hhhcccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccccch-hhHHHHhhccccCCcCe
Q 021374           10 AAEEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAG-NRLVAALSIPRYRHVRE   88 (313)
Q Consensus        10 ~~~~~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~   88 (313)
                      ..+.+..|  .+|||++.+||++|+...+++++++|+.|... +.+..-|+++|+..+..-. ..+++.+.......+++
T Consensus        66 ~~~~~~~~--~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~-AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~  142 (483)
T KOG4341|consen   66 ADNNSISR--SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL-ALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKE  142 (483)
T ss_pred             hhcccccc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hhccccceeeehhcchhcCCCcceehHhhhhcccccc
Confidence            44556678  77999999999999999999999999999976 7899999999987655431 12222222222234555


Q ss_pred             eeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCC
Q 021374           89 INLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHI  168 (313)
Q Consensus        89 L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  168 (313)
                      |.+.++..+.+..+..+...|    +++++|.+.+|..+++..+..+...|++|+.|++..|..+++..++.++..|++|
T Consensus       143 LSlrG~r~v~~sslrt~~~~C----pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  143 LSLRGCRAVGDSSLRTFASNC----PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccCCcchhhHHhhhC----CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            555555444444444444333    5555555555544555544444455555555555544445554444444445555


Q ss_pred             cEEecc--------------------------CCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCE
Q 021374          169 IDLNLS--------------------------GCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRS  222 (313)
Q Consensus       169 ~~L~l~--------------------------~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  222 (313)
                      ++|+++                          ||....+..+.....+++-+..+++..|+.+++.++..+...+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            555444                          444444444444445555666777777777788777777777888888


Q ss_pred             EEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHhhC-CCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374          223 LNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS  300 (313)
Q Consensus       223 L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~  300 (313)
                      |..++|..+++..+..++ .+++|+.|.+++|..+++.++..+++ ++.|+.+++.+|..+++..+..+..+||.|++++
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            888888888888888887 68899999999998889888888875 8899999999988888888888888999999998


Q ss_pred             cCCc
Q 021374          301 SGAE  304 (313)
Q Consensus       301 l~~~  304 (313)
                      ++.|
T Consensus       379 lshc  382 (483)
T KOG4341|consen  379 LSHC  382 (483)
T ss_pred             hhhh
Confidence            8865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.6e-27  Score=183.72  Aligned_cols=271  Identities=21%  Similarity=0.346  Sum_probs=202.6

Q ss_pred             cccccCCch-HHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccccchhhH-------------------
Q 021374           15 ETWSKETVP-KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRL-------------------   74 (313)
Q Consensus        15 ~~~~~~~~p-eiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------   74 (313)
                      ..|.  -+| |++..||+.|..+++.+++.||++|++. +....+|..+|+.......+..                   
T Consensus        96 v~~~--slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~-~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~  172 (419)
T KOG2120|consen   96 VSWD--SLPDEILLGIFSCLCKKELLKVSGVCKRFYRL-ASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMD  172 (419)
T ss_pred             CCcc--cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-cccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhc
Confidence            3474  467 6999999999999999999999999987 7889999999987543321111                   


Q ss_pred             ----HHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 021374           75 ----VAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  150 (313)
Q Consensus        75 ----~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  150 (313)
                          .+.+.. --..++.+|++.. .++...+..+.+.|    .+|+.|.+.+. .+++.....+++ -.+|+.|++++|
T Consensus       173 ~prlae~~~~-frsRlq~lDLS~s-~it~stl~~iLs~C----~kLk~lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~  244 (419)
T KOG2120|consen  173 QPRLAEHFSP-FRSRLQHLDLSNS-VITVSTLHGILSQC----SKLKNLSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMC  244 (419)
T ss_pred             Cchhhhhhhh-hhhhhHHhhcchh-heeHHHHHHHHHHH----Hhhhhcccccc-ccCcHHHHHHhc-cccceeeccccc
Confidence                111100 0124677777763 56667777776666    78888888874 666666655644 468888888888


Q ss_pred             cccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHh-CCCCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCC
Q 021374          151 VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN-YQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYAL  228 (313)
Q Consensus       151 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~-~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~  228 (313)
                      ..++..++..+..+|..|..|+++.|.-.++. +..+..+ -++|+.|+++||. .+....+..+...||+|.+|+++++
T Consensus       245 sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  245 SGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             cccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            88888888888888888888888888544443 4444333 3788888888863 2333456677788999999999998


Q ss_pred             CCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEe
Q 021374          229 SGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL  299 (313)
Q Consensus       229 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L  299 (313)
                      ..+++..+..+.+++.|++|.++.|..+....+..+...|+|.+|++.+|  ++|..+..+.+.+|+|+.-
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lkin  392 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKIN  392 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCcccccc
Confidence            88888888888899999999999998888777777778899999999876  6677777788888887653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.88  E-value=2.8e-23  Score=168.90  Aligned_cols=243  Identities=27%  Similarity=0.469  Sum_probs=197.5

Q ss_pred             cceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHh
Q 021374           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (313)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  137 (313)
                      ..+.+.+.+.....+....-+ ...+|+++.|.+.+|..+++..+..+...|    ++|++|++..|..+++..+..+..
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~-~~~CpnIehL~l~gc~~iTd~s~~sla~~C----~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTF-ASNCPNIEHLALYGCKKITDSSLLSLARYC----RKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             ccccccccccccCCcchhhHH-hhhCCchhhhhhhcceeccHHHHHHHHHhc----chhhhhhhcccchhHHHHHHHHHH
Confidence            445666666665554444433 346888888888888888888888887777    888888888888888888888888


Q ss_pred             cCCCCcEEEecCCcccCHHHHHH--------------------------HHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQH--------------------------LVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~--------------------------~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .|++|++|++++|+.+.+.+++.                          +...++.+.++++..|..++|.++..+...+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            88888888888876665533333                          3334555667778899899999999998899


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHhh-CCCC
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIA-KCKN  269 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~  269 (313)
                      ..|+.|..++|..+++..+.++..++++|+.|-+..|..+++..+..++ +++.|+.+++..+..+++..+..++ +|+.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            9999999999999999989999999999999999999999999999998 7999999999999888888777776 5999


Q ss_pred             CceeeccCCCCCChHHHHHHHH---hCCCccEeecCCcc
Q 021374          270 LVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEM  305 (313)
Q Consensus       270 L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~  305 (313)
                      |+.+.++.|..++++++..+..   +...|+.+.+++|.
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            9999999999999998877764   44578888888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.6e-16  Score=124.70  Aligned_cols=201  Identities=21%  Similarity=0.357  Sum_probs=158.2

Q ss_pred             ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhc
Q 021374           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (313)
Q Consensus        59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  138 (313)
                      .+.+|+++...........  +..|.+|+.|.+++. .+.+.....++..     .+|+.|+++.|..++..++..+...
T Consensus       187 lq~lDLS~s~it~stl~~i--Ls~C~kLk~lSlEg~-~LdD~I~~~iAkN-----~~L~~lnlsm~sG~t~n~~~ll~~s  258 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGI--LSQCSKLKNLSLEGL-RLDDPIVNTIAKN-----SNLVRLNLSMCSGFTENALQLLLSS  258 (419)
T ss_pred             hHHhhcchhheeHHHHHHH--HHHHHhhhhcccccc-ccCcHHHHHHhcc-----ccceeeccccccccchhHHHHHHHh
Confidence            4456666554433333332  447899999999985 5777777776543     7899999999999999999999999


Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhc-CCCCcEEeccCCc-ccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKN-CKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK  216 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  216 (313)
                      |..|..|+|++| ....+.+..+..+ .++|..|+++||. ++.+..+..+...||+|.+|++++|..++++.+.. +-.
T Consensus       259 cs~L~~LNlsWc-~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~k  336 (419)
T KOG2120|consen  259 CSRLDELNLSWC-FLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFK  336 (419)
T ss_pred             hhhHhhcCchHh-hccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHh
Confidence            999999999999 5544445544433 4799999999974 45566788888899999999999998888855554 578


Q ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhh-CCCCCc
Q 021374          217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIA-KCKNLV  271 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~  271 (313)
                      ++.|++|.++.|+.+..+.+..+...|+|.+|++.+|  ++|.....+. .+++|+
T Consensus       337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLK  390 (419)
T ss_pred             cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence            8999999999999999988888899999999999998  6666655554 366655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=1.5e-13  Score=115.84  Aligned_cols=214  Identities=24%  Similarity=0.325  Sum_probs=124.3

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHH---HhcC-CCCcEEEecCCcccCHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII---SSTC-PELKVFSIYWNVRVTDIG  157 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~  157 (313)
                      ..++|+.|+++++. +.......+.. .... ++|++|+++++ .+.+.+...+   ...+ ++|+.|++++| .++..+
T Consensus        79 ~~~~L~~L~l~~~~-~~~~~~~~~~~-l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~  153 (319)
T cd00116          79 KGCGLQELDLSDNA-LGPDGCGVLES-LLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGAS  153 (319)
T ss_pred             hcCceeEEEccCCC-CChhHHHHHHH-Hhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchH
Confidence            36778888887653 32222222221 1222 55888888776 4444333332   2334 77788888877 555333


Q ss_pred             H---HHHHhcCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCCHHHHH---HHHhhCCCCCEEEeCCC
Q 021374          158 I---QHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQ---KILIKCSSLRSLNLYAL  228 (313)
Q Consensus       158 ~---~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~  228 (313)
                      .   ......+++|++|+++++ .+++..+..+..   ..++|++|++++| .+.+.+..   ..+..+++|+.|+++++
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         154 CEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            2   223345567888888775 455555544433   2357888888775 55544433   33445677888888774


Q ss_pred             CCCCHHHHHHhhc-----CCCCCEEecCCCCCCChHHHHH----hhCCCCCceeeccCCCCCChHHHHHHHH---hC-CC
Q 021374          229 SGFTDEAYKKISL-----LAHLKFLDLCGAQNLSDEGLAC----IAKCKNLVSLNLTWCVRITDVGVMAIAE---GC-SS  295 (313)
Q Consensus       229 ~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~-~~  295 (313)
                       .+++..+..+..     .++|++|++++| .+++.+...    +..+++|+++++++| .+++.+...+.+   .. ++
T Consensus       232 -~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~  308 (319)
T cd00116         232 -NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNE  308 (319)
T ss_pred             -cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCc
Confidence             566544444431     367888888877 666444333    334677888888877 777665444432   33 57


Q ss_pred             ccEeecCCcc
Q 021374          296 LEFLSSGAEM  305 (313)
Q Consensus       296 L~~L~l~~~~  305 (313)
                      |+.+++..+.
T Consensus       309 ~~~~~~~~~~  318 (319)
T cd00116         309 LESLWVKDDS  318 (319)
T ss_pred             hhhcccCCCC
Confidence            7777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.60  E-value=3.7e-13  Score=113.49  Aligned_cols=236  Identities=25%  Similarity=0.288  Sum_probs=157.0

Q ss_pred             ceeecccccccchhh---HHHHhhccccCCcCeeeccCCccCc--hHHHHHHHHHhcCCCCCCcEEecCCCCCC--ChHH
Q 021374           59 WLVIDLREMNNAGNR---LVAALSIPRYRHVREINLEFAQDIE--DRHLELLKTKCLGSLQDLESLNLNGCQKI--SDKG  131 (313)
Q Consensus        59 ~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~l~~~~~~~~~~L~~L~l~~~~~~--~~~~  131 (313)
                      .+.+++.........   +...  ....+.++.+++++.. +.  ...+..+... +..+++|+.|+++++...  ....
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~--l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASA--LRPQPSLKELCLSLNE-TGRIPRGLQSLLQG-LTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHH--HhhCCCceEEeccccc-cCCcchHHHHHHHH-HHhcCceeEEEccCCCCChhHHHH
Confidence            466777665533221   2222  2355779999998754 33  3334333333 345789999999987432  1223


Q ss_pred             HHHHHhcCCCCcEEEecCCcccCHHHHHHH---HhcC-CCCcEEeccCCcccchHHH---HHHHHhCCCCcEEecCCCCC
Q 021374          132 IEIISSTCPELKVFSIYWNVRVTDIGIQHL---VKNC-KHIIDLNLSGCKNLLDKSL---QLIADNYQELESLNLTRCVK  204 (313)
Q Consensus       132 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~  204 (313)
                      +..+... ++|++|+++++ .+++.+...+   ...+ ++|+.|++++|. ++....   ......+++|++|++++| .
T Consensus       101 ~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n-~  176 (319)
T cd00116         101 LESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN-G  176 (319)
T ss_pred             HHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC-C
Confidence            3334344 66999999988 6775554433   3345 899999999974 553333   333345689999999995 6


Q ss_pred             CCHHHHHHHH---hhCCCCCEEEeCCCCCCCHHHHHH----hhcCCCCCEEecCCCCCCChHHHHHhhC-----CCCCce
Q 021374          205 LTDGGLQKIL---IKCSSLRSLNLYALSGFTDEAYKK----ISLLAHLKFLDLCGAQNLSDEGLACIAK-----CKNLVS  272 (313)
Q Consensus       205 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~  272 (313)
                      +.+.++..+.   ...++|++|+++++ .+.+.....    +..+++|++|++++| .+++.++..+..     .++|++
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceE
Confidence            7765655443   44569999999986 566554443    346889999999998 688766665543     379999


Q ss_pred             eeccCCCCCChHHHHHHHH---hCCCccEeecCCcc
Q 021374          273 LNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEM  305 (313)
Q Consensus       273 L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~  305 (313)
                      |++++| .+++.+...+.+   .+++|+.+++++|.
T Consensus       255 L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         255 LSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             EEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            999999 888766655543   45689999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.51  E-value=1.5e-13  Score=122.49  Aligned_cols=217  Identities=35%  Similarity=0.548  Sum_probs=131.7

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCC-CCCCChH--HHHHHHhcCCCCcEEEecCCcccCHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG-CQKISDK--GIEIISSTCPELKVFSIYWNVRVTDIGIQ  159 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~-~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  159 (313)
                      ++.++.+.+..+..+++..+..+...+    ++|+.|++++ +......  ....+...|++|+.|+++++..+++.++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKC----PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhC----chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            577777777777666665555554443    7777777776 2222221  22335566677778887777557777777


Q ss_pred             HHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCC---CCCHHHH
Q 021374          160 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS---GFTDEAY  236 (313)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~  236 (313)
                      .++..|++|+.|.+.+|..+++.++..+...+++|++|++++|..+++.++..+..+|++|+.|.+..+.   .+++..+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l  342 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSL  342 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHH
Confidence            7777777888887777766777777777777777888888777777777777666677776665554432   2222221


Q ss_pred             H-------------HhhcCCCCCEEecCCCCCCChHHH-HHhhCCCC--------------CceeeccCCCCCChHHHHH
Q 021374          237 K-------------KISLLAHLKFLDLCGAQNLSDEGL-ACIAKCKN--------------LVSLNLTWCVRITDVGVMA  288 (313)
Q Consensus       237 ~-------------~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~--------------L~~L~l~~~~~~~~~~~~~  288 (313)
                      .             .+..+++++.+.+..+. .++.+. ..+.+|+.              ++.|++..|..+++..+..
T Consensus       343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~  421 (482)
T KOG1947|consen  343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRC  421 (482)
T ss_pred             HHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHH
Confidence            1             11245555555555553 333332 12223333              3666666666666666655


Q ss_pred             HHHhCCCccEeecCCc
Q 021374          289 IAEGCSSLEFLSSGAE  304 (313)
Q Consensus       289 l~~~~~~L~~L~l~~~  304 (313)
                      ....+..++.+++.++
T Consensus       422 ~~~~~~~~~~l~~~~~  437 (482)
T KOG1947|consen  422 LADSCSNLKDLDLSGC  437 (482)
T ss_pred             HhhhhhccccCCccCc
Confidence            5544555666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.45  E-value=9.4e-13  Score=117.44  Aligned_cols=207  Identities=30%  Similarity=0.505  Sum_probs=149.9

Q ss_pred             ccCCcCeeeccCC-ccCchH--HHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 021374           82 RYRHVREINLEFA-QDIEDR--HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI  158 (313)
Q Consensus        82 ~~~~l~~L~l~~~-~~~~~~--~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  158 (313)
                      .++.|+.|+++++ ......  ....+..    .+++|+.|+++++..+++.++..+...|++|+.|.+.+|..+++.++
T Consensus       212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  212 KCPNLEELDLSGCCLLITLSPLLLLLLLS----ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             hCchhheecccCcccccccchhHhhhhhh----hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence            5788888888762 222221  2223333    34888999999886688888888888899999999888866888999


Q ss_pred             HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCC---CCCHH------------HHHHHHhhCCCCCEE
Q 021374          159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV---KLTDG------------GLQKILIKCSSLRSL  223 (313)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~---~~~~~------------~~~~~~~~~~~L~~L  223 (313)
                      ..+.+.|++|++|++++|..+++.++..+...|++|+.|.+..+.   .+.+.            ........+++++.+
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~  367 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL  367 (482)
T ss_pred             HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence            999888999999999998888888888887778887776655432   23322            233345567778777


Q ss_pred             EeCCCCCCCHHHH-HHhhcCCC--------------CCEEecCCCCCCChHHHHHhhC-CCCCceeeccCCCCCChHHHH
Q 021374          224 NLYALSGFTDEAY-KKISLLAH--------------LKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVM  287 (313)
Q Consensus       224 ~l~~~~~~~~~~~-~~l~~~~~--------------L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~  287 (313)
                      .+..+. ..+.+. ..+..+|+              ++.|.++.+..+++..+..... +.+++.+++.+|..++.....
T Consensus       368 ~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~  446 (482)
T KOG1947|consen  368 SLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE  446 (482)
T ss_pred             hhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence            777655 443332 23334443              5899999998899888877765 889999999999888888877


Q ss_pred             HHHHhC
Q 021374          288 AIAEGC  293 (313)
Q Consensus       288 ~l~~~~  293 (313)
                      .+....
T Consensus       447 ~~~~~~  452 (482)
T KOG1947|consen  447 GFASNC  452 (482)
T ss_pred             hhhccc
Confidence            666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=3.1e-13  Score=130.30  Aligned_cols=205  Identities=21%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. +.......+    +..+.+|++|+++++. +.....   ...+++|++|+++++ .+... +...
T Consensus        91 ~l~~L~~L~Ls~n~-~~~~ip~~~----~~~l~~L~~L~Ls~n~-l~~~~p---~~~l~~L~~L~Ls~n-~~~~~-~p~~  159 (968)
T PLN00113         91 RLPYIQTINLSNNQ-LSGPIPDDI----FTTSSSLRYLNLSNNN-FTGSIP---RGSIPNLETLDLSNN-MLSGE-IPND  159 (968)
T ss_pred             CCCCCCEEECCCCc-cCCcCChHH----hccCCCCCEEECcCCc-cccccC---ccccCCCCEEECcCC-ccccc-CChH
Confidence            56788888888753 222111112    2244667777766642 221100   023455556655555 33221 1111


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCC-----------------------CCCHHHHHHHHhhCC
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCV-----------------------KLTDGGLQKILIKCS  218 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~~~  218 (313)
                      ...+++|++|+++++. +.......+ ..+++|++|+++++.                       .+.. .++..+..++
T Consensus       160 ~~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~  236 (968)
T PLN00113        160 IGSFSSLKVLDLGGNV-LVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLT  236 (968)
T ss_pred             HhcCCCCCEEECccCc-ccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCC
Confidence            2345555555555532 211111111 224555555555431                       1111 1111223444


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                      +|+.|+++++ .+.......++.+++|++|++++| .++......+.++++|++|++++| .++.... ..+..+++|+.
T Consensus       237 ~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p-~~~~~l~~L~~  312 (968)
T PLN00113        237 SLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDN-SLSGEIP-ELVIQLQNLEI  312 (968)
T ss_pred             CCCEEECcCc-eeccccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCC-eeccCCC-hhHcCCCCCcE
Confidence            4445544442 222222333444555555555554 333322333444555555555555 3332221 12234566666


Q ss_pred             eecCCc
Q 021374          299 LSSGAE  304 (313)
Q Consensus       299 L~l~~~  304 (313)
                      |++++|
T Consensus       313 L~l~~n  318 (968)
T PLN00113        313 LHLFSN  318 (968)
T ss_pred             EECCCC
Confidence            666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.38  E-value=1e-11  Score=99.89  Aligned_cols=243  Identities=21%  Similarity=0.233  Sum_probs=149.5

Q ss_pred             cceeecccccccchh---hHHHHhhccccCCcCeeeccCCc--cCchH---HHHHHHHHhcCCCCCCcEEecCCCCCCCh
Q 021374           58 LWLVIDLREMNNAGN---RLVAALSIPRYRHVREINLEFAQ--DIEDR---HLELLKTKCLGSLQDLESLNLNGCQKISD  129 (313)
Q Consensus        58 ~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~L~l~~~~--~~~~~---~~~~l~~~~~~~~~~L~~L~l~~~~~~~~  129 (313)
                      -+..+++++......   .+...+  ..-+.|+..+++...  .+.+.   .+..+.+. +...++|+.|+|+.+ -+..
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L--~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a-L~~~~~L~~ldLSDN-A~G~  106 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVL--ASKKELREVNLSDMFTGRLKDEIPEALKMLSKA-LLGCPKLQKLDLSDN-AFGP  106 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHH--hhcccceeeehHhhhcCCcHHHHHHHHHHHHHH-HhcCCceeEeecccc-ccCc
Confidence            346677776443321   122222  234577777776421  11111   22222222 445568888888874 3333


Q ss_pred             ---HHHHHHHhcCCCCcEEEecCCcccCHHHHHHH------------HhcCCCCcEEeccCCcccchHHH---HHHHHhC
Q 021374          130 ---KGIEIISSTCPELKVFSIYWNVRVTDIGIQHL------------VKNCKHIIDLNLSGCKNLLDKSL---QLIADNY  191 (313)
Q Consensus       130 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~l---~~l~~~~  191 (313)
                         .++..+...|.+|+.|.|.+| .+...+-..+            +..-+.|+.+..... .+.+.+.   .......
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH  184 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence               456666777888888888887 6655443321            123357787777663 3444333   3333446


Q ss_pred             CCCcEEecCCCCCCCHHHHH---HHHhhCCCCCEEEeCCCCCCCHHHHHHh----hcCCCCCEEecCCCCCCChHHHHHh
Q 021374          192 QELESLNLTRCVKLTDGGLQ---KILIKCSSLRSLNLYALSGFTDEAYKKI----SLLAHLKFLDLCGAQNLSDEGLACI  264 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l  264 (313)
                      |+|+.+++.. +.+...++.   .-+..|++|+.|++.+ +.++..+-..+    ..+++|+.|++++| .+.+.+...+
T Consensus       185 ~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~  261 (382)
T KOG1909|consen  185 PTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAF  261 (382)
T ss_pred             cccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHH
Confidence            8889988887 566655553   3356789999999987 45555554444    46788999999998 6776665554


Q ss_pred             h-----CCCCCceeeccCCCCCChHHHHHHHH---hCCCccEeecCCccccccc
Q 021374          265 A-----KCKNLVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEMNCCSC  310 (313)
Q Consensus       265 ~-----~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~  310 (313)
                      .     ..|+|+.|.+.+| .++-.+...+..   ..|.|++|+|++|..+..|
T Consensus       262 ~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~d  314 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKD  314 (382)
T ss_pred             HHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccc
Confidence            3     3789999999988 777666444432   3678999999988764333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.37  E-value=1.6e-12  Score=125.45  Aligned_cols=182  Identities=19%  Similarity=0.164  Sum_probs=79.7

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .+++|+.|+++++. +....... ...+++|++|++++| .+.... ......+++|+.|+++++ .++......+ ..+
T Consensus       162 ~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~L~~n-~l~~~~p~~l-~~l  235 (968)
T PLN00113        162 SFSSLKVLDLGGNV-LVGKIPNS-LTNLTSLEFLTLASN-QLVGQI-PRELGQMKSLKWIYLGYN-NLSGEIPYEI-GGL  235 (968)
T ss_pred             cCCCCCEEECccCc-ccccCChh-hhhCcCCCeeeccCC-CCcCcC-ChHHcCcCCccEEECcCC-ccCCcCChhH-hcC
Confidence            44566666666542 21111111 134556666666655 322211 111234556666666554 2222111122 235


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCC-----------------------CCCHHHHHHhhcCCCCCEE
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS-----------------------GFTDEAYKKISLLAHLKFL  248 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------------~~~~~~~~~l~~~~~L~~L  248 (313)
                      ++|++|+++++ .+.. .++..+.++++|+.|+++++.                       .+.......+..+++|++|
T Consensus       236 ~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  313 (968)
T PLN00113        236 TSLNHLDLVYN-NLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL  313 (968)
T ss_pred             CCCCEEECcCc-eecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence            66666666663 2221 122223445555555555421                       2222222233344455555


Q ss_pred             ecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          249 DLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       249 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      ++++| .++......+..+++|+.|++++| .++......+ ..+++|+.|++++|
T Consensus       314 ~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l-~~~~~L~~L~Ls~n  366 (968)
T PLN00113        314 HLFSN-NFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPKNL-GKHNNLTVLDLSTN  366 (968)
T ss_pred             ECCCC-ccCCcCChhHhcCCCCCEEECcCC-CCcCcCChHH-hCCCCCcEEECCCC
Confidence            55544 333322333445555555555555 3332222222 24556666666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=5.7e-13  Score=110.02  Aligned_cols=185  Identities=18%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .+++++.|+|+..-......+..++..+|+|+.|+++.+. +....-...-...+.|+.|.++.| +++...+..+...+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~f  221 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTF  221 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhC
Confidence            3366666666653222333445555666666666666542 111000000112455666666665 45555555555556


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHh------h
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACI------A  265 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l------~  265 (313)
                      |+|+.|.+.+...+......  ...+..|+.|++++...+........+.+|.|+.|.++.+ .+++-.....      .
T Consensus       222 Psl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTH  298 (505)
T ss_pred             CcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhc
Confidence            66666666653221111111  1223456666666654444444445556666666666665 3333211111      2


Q ss_pred             CCCCCceeeccCCCCCChH-HHHHHHHhCCCccEeecCC
Q 021374          266 KCKNLVSLNLTWCVRITDV-GVMAIAEGCSSLEFLSSGA  303 (313)
Q Consensus       266 ~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~  303 (313)
                      .+++|++|++..| .+.+. .+..+. ..++|+.|.+..
T Consensus       299 ~f~kL~~L~i~~N-~I~~w~sl~~l~-~l~nlk~l~~~~  335 (505)
T KOG3207|consen  299 TFPKLEYLNISEN-NIRDWRSLNHLR-TLENLKHLRITL  335 (505)
T ss_pred             ccccceeeecccC-ccccccccchhh-ccchhhhhhccc
Confidence            3566667766666 44332 232222 345555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=7.7e-11  Score=95.01  Aligned_cols=204  Identities=24%  Similarity=0.323  Sum_probs=119.6

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHH------------HhcCCCCcEEEecC
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII------------SSTCPELKVFSIYW  149 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~~  149 (313)
                      .++.|+.++|+.+. +.......+... +.....|++|.|.+| .+...+-..+            ...-+.|+.+....
T Consensus        90 ~~~~L~~ldLSDNA-~G~~g~~~l~~l-l~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNA-FGPKGIRGLEEL-LSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             cCCceeEeeccccc-cCccchHHHHHH-HHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            45688888887643 433333322221 233477888888877 4443332221            12336777777776


Q ss_pred             CcccCHHH---HHHHHhcCCCCcEEeccCCcccchHHHHHH---HHhCCCCcEEecCCCCCCCHHHH---HHHHhhCCCC
Q 021374          150 NVRVTDIG---IQHLVKNCKHIIDLNLSGCKNLLDKSLQLI---ADNYQELESLNLTRCVKLTDGGL---QKILIKCSSL  220 (313)
Q Consensus       150 ~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L  220 (313)
                      + .+.+.+   +....+.+|.|+.+.+... .+...+...+   ..+||+|+.|++.+ +.++..+-   ...+..+++|
T Consensus       167 N-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  167 N-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             c-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchh
Confidence            6 444333   3444556678888887763 4444444222   33578888888877 45554332   2334456778


Q ss_pred             CEEEeCCCCCCCHHHHHHhh-----cCCCCCEEecCCCCCCChHHHHHh----hCCCCCceeeccCCCCC--ChHHHHHH
Q 021374          221 RSLNLYALSGFTDEAYKKIS-----LLAHLKFLDLCGAQNLSDEGLACI----AKCKNLVSLNLTWCVRI--TDVGVMAI  289 (313)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~--~~~~~~~l  289 (313)
                      +.|++++| .+.+.+..++.     ..|+|+.|.+.+| .++.++...+    ...|.|+.|+|++| .+  .++++..+
T Consensus       244 ~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei  320 (382)
T KOG1909|consen  244 RELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEI  320 (382)
T ss_pred             eeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHH
Confidence            88888886 34333333332     5778888888887 5666554333    24678888888887 56  66677777


Q ss_pred             HHhCC
Q 021374          290 AEGCS  294 (313)
Q Consensus       290 ~~~~~  294 (313)
                      ...++
T Consensus       321 ~~~~~  325 (382)
T KOG1909|consen  321 ASKFD  325 (382)
T ss_pred             HHhcc
Confidence            66654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.2e-12  Score=108.14  Aligned_cols=136  Identities=20%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC  217 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  217 (313)
                      .++.|+.|.+++| .++...+..+...+|+|+.|.+.+...+.......  .-+..|+.|+|++. .+.+.........+
T Consensus       195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N-~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNN-NLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCC-cccccccccccccc
Confidence            3455555555555 55555555555555555555555532111111110  11234555555553 22222222233455


Q ss_pred             CCCCEEEeCCCCCCCH------HHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          218 SSLRSLNLYALSGFTD------EAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      |.|+.|+++.+ ++.+      +.......+|+|++|++..|+......+..+...++|++|.+..+
T Consensus       271 ~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  271 PGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            55555555543 2211      111112345555555555553322223333444455555554433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.23  E-value=3.4e-13  Score=115.31  Aligned_cols=163  Identities=20%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC  217 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  217 (313)
                      ++..|+.|+++.+ .+....+... ..+++|+.|++++. .++.-.-..+. .+..|+.|+++. +.+.... ...+.++
T Consensus       291 gLt~L~~L~lS~N-aI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf~-~L~~Le~LnLs~-Nsi~~l~-e~af~~l  364 (873)
T KOG4194|consen  291 GLTSLEQLDLSYN-AIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSFR-VLSQLEELNLSH-NSIDHLA-EGAFVGL  364 (873)
T ss_pred             ccchhhhhccchh-hhheeecchh-hhcccceeEecccc-ccccCChhHHH-HHHHhhhhcccc-cchHHHH-hhHHHHh
Confidence            3455556666554 3332222222 24677777777763 33332222221 245677777777 4444321 1234567


Q ss_pred             CCCCEEEeCCCCCC---CHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374          218 SSLRSLNLYALSGF---TDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS  294 (313)
Q Consensus       218 ~~L~~L~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  294 (313)
                      .+|+.|+++.. .+   .++....+..+++|+.|.+.|| .+....-..+.+++.|++|+|.+| .+-......|. .+ 
T Consensus       365 ssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe-~m-  439 (873)
T KOG4194|consen  365 SSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFE-PM-  439 (873)
T ss_pred             hhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC-cceeecccccc-cc-
Confidence            88888888763 32   1234455667889999999988 666666667888899999999887 55444444443 23 


Q ss_pred             CccEeecCCcccccccc
Q 021374          295 SLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       295 ~L~~L~l~~~~~~~~~~  311 (313)
                      +|++|.+.....-|.|+
T Consensus       440 ~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  440 ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             hhhhhhhcccceEEecc
Confidence            78888888888888886

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.16  E-value=4.2e-12  Score=108.78  Aligned_cols=44  Identities=18%  Similarity=0.092  Sum_probs=21.9

Q ss_pred             HHHHHccCCCcceeecccccccchhhHHHHhhccccCCcCeeeccCC
Q 021374           48 LHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   94 (313)
Q Consensus        48 w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~   94 (313)
                      |+......|..-+.+++++.....-.+..   +...++|+++++..+
T Consensus        69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~---f~nl~nLq~v~l~~N  112 (873)
T KOG4194|consen   69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEF---FYNLPNLQEVNLNKN  112 (873)
T ss_pred             ccccCCcCccceeeeeccccccccCcHHH---HhcCCcceeeeeccc
Confidence            34333344555556676665433222211   234577777776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=99.09  E-value=9e-10  Score=100.30  Aligned_cols=158  Identities=13%  Similarity=0.152  Sum_probs=115.3

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      .+|++|+++|...+.......+...+|+|++|.+.+- .+....+..+...+|+|.+||++++ .++.-   .-.+++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc---HHHhcccc
Confidence            5788888888766666666777777899999999884 4555557778888899999999884 45542   22467788


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHH-HH-Hhh---CCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEG-LA-CIA---KCKNLVSLNLTWCVRITDVGVMAIAEGCS  294 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~-~l~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  294 (313)
                      |+.|.+.+...-+-..+..+..+.+|+.||++......+.- +. .+.   .+|+|+.||.++. .++.+.+..+....|
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~  275 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP  275 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence            88888887543344566777788999999998765444331 11 121   3789999999987 888888888888888


Q ss_pred             CccEeecCC
Q 021374          295 SLEFLSSGA  303 (313)
Q Consensus       295 ~L~~L~l~~  303 (313)
                      +|+.+..-+
T Consensus       276 ~L~~i~~~~  284 (699)
T KOG3665|consen  276 NLQQIAALD  284 (699)
T ss_pred             cHhhhhhhh
Confidence            888887654

>PLN03210 Resistant to P

Probab=99.04  E-value=6.9e-10  Score=108.16  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=19.2

Q ss_pred             hhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          264 IAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       264 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      +..+++|+.|++++|..+.....  -...+++|+.+++++|
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDC  903 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCC
Confidence            44556666666666655543221  1123445555555554

syringae 6; Provisional

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=99.02  E-value=2e-09  Score=98.02  Aligned_cols=136  Identities=18%  Similarity=0.220  Sum_probs=109.4

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      .+|++|+++|...+...+...+...+|+|++|.+.+ ..+..+.+..+..++|+|..|+++++ .+++  +..++.+++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n--l~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISN--LSGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccC--cHHHhccccH
Confidence            589999999977777778888888999999999999 56666668888999999999999995 5655  4778899999


Q ss_pred             CEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChH-HHHH---HHHhCCCccEeecCCcc
Q 021374          246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDV-GVMA---IAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~---l~~~~~~L~~L~l~~~~  305 (313)
                      +.|.+.+-+..+...+..+.++++|+.||++.-....+. .+..   -...+|+|+.||.+++.
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            999998875555566788889999999999976554444 2222   23457999999998763

>PLN03210 Resistant to P

Probab=98.95  E-value=2.7e-09  Score=104.11  Aligned_cols=86  Identities=23%  Similarity=0.364  Sum_probs=45.8

Q ss_pred             CCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHh
Q 021374          111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN  190 (313)
Q Consensus       111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~  190 (313)
                      +.+++|+.|+++++..+...+  . ...+++|++|++.+|..+..  +...+..+++|+.|++++|..+..  ++... .
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~--Lp~~i-~  702 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEI--LPTGI-N  702 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCc--cCCcC-C
Confidence            345677777777654332221  1 13467777777776644322  222234566777777777654433  11111 3


Q ss_pred             CCCCcEEecCCCCC
Q 021374          191 YQELESLNLTRCVK  204 (313)
Q Consensus       191 ~~~L~~L~l~~~~~  204 (313)
                      +++|+.|++++|..
T Consensus       703 l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        703 LKSLYRLNLSGCSR  716 (1153)
T ss_pred             CCCCCEEeCCCCCC
Confidence            56666666666543

syringae 6; Provisional

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.92  E-value=5.9e-10  Score=64.86  Aligned_cols=44  Identities=25%  Similarity=0.333  Sum_probs=35.7

Q ss_pred             CCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374           20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL   64 (313)
Q Consensus        20 ~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~   64 (313)
                      .+|+|++.+||+||++.|+.+++.|||+|+.+. ..+.+|+.+.+
T Consensus         3 ~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~-~~~~lW~~~~~   46 (47)
T PF12937_consen    3 SLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA-NDNSLWRRLCL   46 (47)
T ss_dssp             CS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH-TCCCHHHHHC-
T ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-CChhhhhhhcc
Confidence            345589999999999999999999999999985 55599987654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.82  E-value=1.6e-10  Score=100.25  Aligned_cols=131  Identities=23%  Similarity=0.272  Sum_probs=69.6

Q ss_pred             CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374          165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH  244 (313)
Q Consensus       165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  244 (313)
                      .++|+.|++++. .++.-..  -...+.+|++|++++ +.++.  ++..+-.+++|+.|.+.+..--.+..+..++++.+
T Consensus       244 l~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSr-NQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  244 LRNLRRLNLSGN-KITELNM--TEGEWENLETLNLSR-NQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             hhhhheeccCcC-ceeeeec--cHHHHhhhhhhcccc-chhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence            456666666662 3443211  112245666666665 34432  23333344556666555421111222344555666


Q ss_pred             CCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374          245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN  306 (313)
Q Consensus       245 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  306 (313)
                      |+.+...+| .+ .-....+++|++|+.|.|+.|..+|--....+   +|.|+.|++..|.+
T Consensus       318 Levf~aanN-~L-ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl---L~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  318 LEVFHAANN-KL-ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL---LPDLKVLDLRENPN  374 (1255)
T ss_pred             hHHHHhhcc-cc-ccCchhhhhhHHHHHhcccccceeechhhhhh---cCCcceeeccCCcC
Confidence            666666555 22 22344577888888888887765653333333   47788888887753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.81  E-value=1.8e-07  Score=73.59  Aligned_cols=212  Identities=18%  Similarity=0.251  Sum_probs=139.9

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHH----------HHHHHhcCCCCcEEEecCCcc
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG----------IEIISSTCPELKVFSIYWNVR  152 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~  152 (313)
                      ...+++++++++ .+.......+... +.+-.+|+..+++..  ++...          +....-.||.|++++|+.+ .
T Consensus        29 ~d~~~evdLSGN-tigtEA~e~l~~~-ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-A  103 (388)
T COG5238          29 MDELVEVDLSGN-TIGTEAMEELCNV-IANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-A  103 (388)
T ss_pred             hcceeEEeccCC-cccHHHHHHHHHH-HhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-c
Confidence            578899999996 4655555555433 455677888887753  22211          1222356899999999987 3


Q ss_pred             cCHH---HHHHHHhcCCCCcEEeccCCcccchHHHHHHH------------HhCCCCcEEecCCCCCCCH---HHHHHHH
Q 021374          153 VTDI---GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA------------DNYQELESLNLTRCVKLTD---GGLQKIL  214 (313)
Q Consensus       153 ~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~------------~~~~~L~~L~l~~~~~~~~---~~~~~~~  214 (313)
                      +...   .+..++.+...|++|.+++| .++..+=..+.            ..-|.|+.+..+. +.+..   ......+
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l  181 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALL  181 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHH
Confidence            3332   34455667789999999987 44432222221            1248899999887 34332   2222334


Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHH-----hhcCCCCCEEecCCCCCCChHHHHHh----hCCCCCceeeccCCCCCChHH
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKK-----ISLLAHLKFLDLCGAQNLSDEGLACI----AKCKNLVSLNLTWCVRITDVG  285 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~  285 (313)
                      ....+|+.+.+.. +.+...+...     +..+.+|+.|+|.+| .++-.+-..+    +..+.|+.|.+..| .++..+
T Consensus       182 ~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G  258 (388)
T COG5238         182 ESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEG  258 (388)
T ss_pred             HhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch-hhcccc
Confidence            4447899999987 4666654443     347899999999998 6766554444    35678999999999 888888


Q ss_pred             HHHHHHhC-----CCccEeecCCc
Q 021374          286 VMAIAEGC-----SSLEFLSSGAE  304 (313)
Q Consensus       286 ~~~l~~~~-----~~L~~L~l~~~  304 (313)
                      ...+++.+     |+|+.|...+|
T Consensus       259 ~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         259 VKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             HHHHHHHhhhhcCCCccccccchh
Confidence            77776543     67777776665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.67  E-value=8.4e-09  Score=77.66  Aligned_cols=126  Identities=21%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      ..+++|+|.++ .++.  +..+...+.+|+.|+++++ .++.  +..+. .+++|+.|++++ +.+..-+ ..+...+|+
T Consensus        19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~   89 (175)
T PF14580_consen   19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSN-NRISSIS-EGLDKNLPN   89 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT
T ss_pred             ccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCC-CCCCccc-cchHHhCCc
Confidence            34566666665 4432  2222223456666666664 3332  22222 255666666665 3444311 112234566


Q ss_pred             CCEEEeCCCCCCCH-HHHHHhhcCCCCCEEecCCCCCCChHH--HHHhhCCCCCceeec
Q 021374          220 LRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGAQNLSDEG--LACIAKCKNLVSLNL  275 (313)
Q Consensus       220 L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l  275 (313)
                      |+.|++++. .+.+ ..+..+..+|+|++|++.+|+......  ...+..+|+|+.||-
T Consensus        90 L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            666666552 2221 123344455566666665554221111  112334555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.67  E-value=2e-09  Score=88.46  Aligned_cols=94  Identities=26%  Similarity=0.162  Sum_probs=61.9

Q ss_pred             HhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC
Q 021374          214 LIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC  293 (313)
Q Consensus       214 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  293 (313)
                      ++.+++|+.|++++ ..++...-.++.....++.|.|..| .+....-..+.+...|++|+|.+| .|+-.....+- ..
T Consensus       270 f~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~-~~  345 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQ-TL  345 (498)
T ss_pred             HhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEeccccc-cc
Confidence            34566777777776 4555554555556666777777666 443333334556788889999887 66655444333 34


Q ss_pred             CCccEeecCCcccccccc
Q 021374          294 SSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       294 ~~L~~L~l~~~~~~~~~~  311 (313)
                      ..|.+|.+-.|..+|+|.
T Consensus       346 ~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             ceeeeeehccCcccCccc
Confidence            578999999999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.57  E-value=4.7e-09  Score=91.47  Aligned_cols=157  Identities=24%  Similarity=0.266  Sum_probs=80.4

Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK  216 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  216 (313)
                      .+.+++-.|+|+++ .+... ...++.++..|-.|+++.. .+.  .++.-...+..|++|.+++ +.+....+.. +..
T Consensus       123 E~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~N-rLe--~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQ-LPs  195 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNN-RLE--MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQ-LPS  195 (1255)
T ss_pred             hhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccc-hhh--hcCHHHHHHhhhhhhhcCC-ChhhHHHHhc-Ccc
Confidence            34455556666655 33221 2223334455556666552 221  1221222345667777766 3333222222 233


Q ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374          217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL  296 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  296 (313)
                      +++|+.|.+++....-+..+..+..+.+|..++++.| .++. ....+.+.++|+.|+|++| .++.....  ...+.+|
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~-vPecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~l  270 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPI-VPECLYKLRNLRRLNLSGN-KITELNMT--EGEWENL  270 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCc-chHHHhhhhhhheeccCcC-ceeeeecc--HHHHhhh
Confidence            4455566666543333333334445567777777776 4443 2445667788888888887 66554321  1135677


Q ss_pred             cEeecCCcc
Q 021374          297 EFLSSGAEM  305 (313)
Q Consensus       297 ~~L~l~~~~  305 (313)
                      +.|+++.|.
T Consensus       271 EtLNlSrNQ  279 (1255)
T KOG0444|consen  271 ETLNLSRNQ  279 (1255)
T ss_pred             hhhccccch
Confidence            777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=1.1e-07  Score=75.65  Aligned_cols=87  Identities=16%  Similarity=0.065  Sum_probs=48.0

Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS  272 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  272 (313)
                      .++++.+.+|.......+..+.+-+|++..+.+..++--+...-.....+|.+-.|.|+.+..-+...+..+.++++|..
T Consensus       174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d  253 (418)
T KOG2982|consen  174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD  253 (418)
T ss_pred             hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence            33444444443222333444455667777777766543333333334456666677777663333445666777777777


Q ss_pred             eeccCCC
Q 021374          273 LNLTWCV  279 (313)
Q Consensus       273 L~l~~~~  279 (313)
                      |.+.+++
T Consensus       254 lRv~~~P  260 (418)
T KOG2982|consen  254 LRVSENP  260 (418)
T ss_pred             eeccCCc
Confidence            7777763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.47  E-value=4.6e-08  Score=73.69  Aligned_cols=127  Identities=21%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh-hcCC
Q 021374          165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI-SLLA  243 (313)
Q Consensus       165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~  243 (313)
                      +-++++|++.++ .++.  +..+...+.+|+.|+++++ .+..  +.. +..+++|+.|++++ ..++... ..+ ..+|
T Consensus        18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~-l~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp   88 (175)
T PF14580_consen   18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITK--LEG-LPGLPRLKTLDLSN-NRISSIS-EGLDKNLP   88 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-T
T ss_pred             cccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCcc--ccC-ccChhhhhhcccCC-CCCCccc-cchHHhCC
Confidence            346899999995 4443  4445445789999999994 5654  222 45679999999998 4555432 223 3689


Q ss_pred             CCCEEecCCCCCCCh-HHHHHhhCCCCCceeeccCCCCCChHH--HHHHHHhCCCccEeecC
Q 021374          244 HLKFLDLCGAQNLSD-EGLACIAKCKNLVSLNLTWCVRITDVG--VMAIAEGCSSLEFLSSG  302 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~  302 (313)
                      +|++|++++| .+.+ ..+..++.+++|+.|++.+|| +++..  -..+...+|+|+.||-.
T Consensus        89 ~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   89 NLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence            9999999999 5544 335567789999999999984 44332  34455689999999864

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=2.2e-07  Score=69.78  Aligned_cols=105  Identities=27%  Similarity=0.410  Sum_probs=84.9

Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      .++.++-++ ..+...++.. +.+++.++.|.+.+|..+.+..+..++ -.++|+.|+|++|+.||+.++..+.++++|+
T Consensus       102 ~IeaVDAsd-s~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASD-SSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCC-chHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            477888888 4777777776 588999999999999999999888887 5789999999999999999999999999999


Q ss_pred             eeeccCCCCCChHH--HHHHHHhCCCccEe
Q 021374          272 SLNLTWCVRITDVG--VMAIAEGCSSLEFL  299 (313)
Q Consensus       272 ~L~l~~~~~~~~~~--~~~l~~~~~~L~~L  299 (313)
                      .|.+.+-+.+..-+  ...+-+.+|++...
T Consensus       180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~  209 (221)
T KOG3864|consen  180 RLHLYDLPYVANLELVQRQLEEALPKCDIV  209 (221)
T ss_pred             HHHhcCchhhhchHHHHHHHHHhCccccee
Confidence            99998766655433  33444567776544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=6.2e-07  Score=67.45  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=84.2

Q ss_pred             CCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCC
Q 021374          167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK  246 (313)
Q Consensus       167 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  246 (313)
                      .++.++-+++ .+...++..+.. ++.|+.|.+.+|..+.+.++..+..-.++|+.|++++|+.+++.++..+..+++|+
T Consensus       102 ~IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            4677888885 677778887765 89999999999999999999888777799999999999999999999999999999


Q ss_pred             EEecCCCCCCChHHHHH--hh-CCCCCcee
Q 021374          247 FLDLCGAQNLSDEGLAC--IA-KCKNLVSL  273 (313)
Q Consensus       247 ~L~l~~~~~~~~~~~~~--l~-~~~~L~~L  273 (313)
                      .|.|.+-+.+...+...  +. .+|+++..
T Consensus       180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~  209 (221)
T KOG3864|consen  180 RLHLYDLPYVANLELVQRQLEEALPKCDIV  209 (221)
T ss_pred             HHHhcCchhhhchHHHHHHHHHhCccccee
Confidence            99998876665544332  22 35655443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=3.3e-07  Score=73.03  Aligned_cols=194  Identities=17%  Similarity=0.167  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCccc
Q 021374          100 RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL  179 (313)
Q Consensus       100 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  179 (313)
                      ..+..+...+    +.++.++|.+...-..+.+..+.+.+|.|+.|+|+.+ .+... +..+.....+|+.|-+.|. .+
T Consensus        61 gd~~~~~~~~----~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~-I~~lp~p~~nl~~lVLNgT-~L  133 (418)
T KOG2982|consen   61 GDVMLFGSSV----TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSD-IKSLPLPLKNLRVLVLNGT-GL  133 (418)
T ss_pred             hhHHHHHHHh----hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCc-cccCcccccceEEEEEcCC-CC
Confidence            3444554433    6666677766544444556666666777777777655 22211 1111112346666666663 45


Q ss_pred             chHHHHHHHHhCCCCcEEecCCCC----CCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCCCCEEecCCCC
Q 021374          180 LDKSLQLIADNYQELESLNLTRCV----KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHLKFLDLCGAQ  254 (313)
Q Consensus       180 ~~~~l~~l~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~  254 (313)
                      .......+...+|.++.|.++..+    .+.+++...   ..+.+++|.+..|....-.....++ -+|++..+.+..|+
T Consensus       134 ~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  134 SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP  210 (418)
T ss_pred             Chhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence            555555555556666666665520    111111111   2334555555544211111111122 46666666666664


Q ss_pred             CCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          255 NLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       255 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      .-+...-.....+|.+.-|.++.+ ++.+.+-.+-...+|.|..|.+.++
T Consensus       211 lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~  259 (418)
T KOG2982|consen  211 LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSEN  259 (418)
T ss_pred             ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCC
Confidence            443333333334566666666655 5554443333335666766666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.30  E-value=2.2e-05  Score=62.09  Aligned_cols=188  Identities=16%  Similarity=0.167  Sum_probs=120.5

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcC---CCCcEEEecCC--cccCHHH------HHHHHhcCCCCcEEeccCCcccc
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTC---PELKVFSIYWN--VRVTDIG------IQHLVKNCKHIIDLNLSGCKNLL  180 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~--~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~  180 (313)
                      .+..+..++|++. .+.....+.++...   .+|+..+++.-  ....++.      +......||+|+..+++.. .++
T Consensus        28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg  105 (388)
T COG5238          28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFG  105 (388)
T ss_pred             hhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccC
Confidence            3578999999995 66766666665554   45555555432  1112221      2222346999999999974 333


Q ss_pred             h---HHHHHHHHhCCCCcEEecCCCCCCCH---HHHH----H-----HHhhCCCCCEEEeCCCCCCCHHHHH----Hhhc
Q 021374          181 D---KSLQLIADNYQELESLNLTRCVKLTD---GGLQ----K-----ILIKCSSLRSLNLYALSGFTDEAYK----KISL  241 (313)
Q Consensus       181 ~---~~l~~l~~~~~~L~~L~l~~~~~~~~---~~~~----~-----~~~~~~~L~~L~l~~~~~~~~~~~~----~l~~  241 (313)
                      .   ..+..+.++..+|++|.+.+| .+..   .-+.    .     -...-|.|+.+..+. +++.+....    .+.+
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~s  183 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLES  183 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHh
Confidence            3   334455566789999999985 4332   1111    1     123457899988876 344332222    2334


Q ss_pred             CCCCCEEecCCCCCCChHHHHHh-----hCCCCCceeeccCCCCCChHHHHHHH---HhCCCccEeecCCcc
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACI-----AKCKNLVSLNLTWCVRITDVGVMAIA---EGCSSLEFLSSGAEM  305 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~  305 (313)
                      -.+|+++.+..| .+...++..+     ..+.+|+.||+..| .+|-.+-..++   ..++.|++|.+..|.
T Consensus       184 h~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         184 HENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             hcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchh
Confidence            469999999998 6766665554     35899999999998 77766644443   457789999998884

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.27  E-value=4.8e-08  Score=88.65  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             HhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          263 CIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       263 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .+...++|+.+|++.| .++...+.... -.|+|+.|+++||.
T Consensus       447 e~~~l~qL~~lDlS~N-~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCN-NLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhcCcceEEecccc-hhhhhhhhhhC-CCcccceeeccCCc
Confidence            3456789999999876 77666555444 24899999999986

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.25  E-value=8.3e-07  Score=49.85  Aligned_cols=38  Identities=16%  Similarity=0.388  Sum_probs=32.9

Q ss_pred             chHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcce
Q 021374           22 VPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWL   60 (313)
Q Consensus        22 ~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~   60 (313)
                      |+|++..||.||+..|+.+++.||+.|+.++ ..+..|.
T Consensus         2 P~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~-~~~~~~~   39 (41)
T smart00256        2 PDEILEEILSKLPPKDLLRLRKVSRRWRSLI-DSHDFWF   39 (41)
T ss_pred             CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cChhhhh
Confidence            4589999999999999999999999999884 5566665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.02  E-value=1e-06  Score=80.38  Aligned_cols=129  Identities=30%  Similarity=0.317  Sum_probs=84.2

Q ss_pred             CCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374          141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL  220 (313)
Q Consensus       141 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  220 (313)
                      .|+.|.+.++ .+++..++.+ .+.++|+.|++++. .+.......+ ..++.|++|+++| +.++.  ++.-+..++.|
T Consensus       360 ~Lq~LylanN-~Ltd~c~p~l-~~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL~LSG-NkL~~--Lp~tva~~~~L  432 (1081)
T KOG0618|consen  360 ALQELYLANN-HLTDSCFPVL-VNFKHLKVLHLSYN-RLNSFPASKL-RKLEELEELNLSG-NKLTT--LPDTVANLGRL  432 (1081)
T ss_pred             HHHHHHHhcC-cccccchhhh-ccccceeeeeeccc-ccccCCHHHH-hchHHhHHHhccc-chhhh--hhHHHHhhhhh
Confidence            3555666655 6666655554 46788899998884 3333222222 2367888888888 56654  23334567788


Q ss_pred             CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCC
Q 021374          221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVR  280 (313)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  280 (313)
                      ++|...+. .+. . +-.+..++.|+.+|++.| .++...+......++|++||+++|..
T Consensus       433 ~tL~ahsN-~l~-~-fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  433 HTLRAHSN-QLL-S-FPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhhcCC-cee-e-chhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence            88877652 222 1 225677899999999988 77766554444458999999999853

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.01  E-value=2e-06  Score=68.87  Aligned_cols=129  Identities=24%  Similarity=0.210  Sum_probs=86.9

Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC  217 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  217 (313)
                      .+..|++++|+++ .++.  +....+-.|.++.|+++.. .+..  +..+ ..+++|+.|++++ +.++.  ...+-..+
T Consensus       282 TWq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N-~i~~--v~nL-a~L~~L~~LDLS~-N~Ls~--~~Gwh~KL  351 (490)
T KOG1259|consen  282 TWQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQN-RIRT--VQNL-AELPQLQLLDLSG-NLLAE--CVGWHLKL  351 (490)
T ss_pred             hHhhhhhcccccc-chhh--hhhhhhhccceeEEecccc-ceee--ehhh-hhcccceEeeccc-chhHh--hhhhHhhh
Confidence            3457888999887 5543  2333345689999999984 4443  2222 3478999999998 44443  11122345


Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      -+++.|.++.. .+  +.+..++++-+|.+|++.+|..-.-+.+..++++|-|+++.+.+|+
T Consensus       352 GNIKtL~La~N-~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  352 GNIKTLKLAQN-KI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             cCEeeeehhhh-hH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            67888888762 22  3456667788999999999843334556778889999999999884

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.00  E-value=8.2e-07  Score=79.04  Aligned_cols=109  Identities=26%  Similarity=0.285  Sum_probs=71.0

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL  270 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  270 (313)
                      +|.|++|+|++ +++.+-  . .+..+++|++|++++. .+.-..-.....+ .|+.|.+++| .++  .+..+.++.+|
T Consensus       186 l~ale~LnLsh-Nk~~~v--~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN-~l~--tL~gie~LksL  256 (1096)
T KOG1859|consen  186 LPALESLNLSH-NKFTKV--D-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNN-ALT--TLRGIENLKSL  256 (1096)
T ss_pred             HHHhhhhccch-hhhhhh--H-HHHhcccccccccccc-hhccccccchhhh-hheeeeeccc-HHH--hhhhHHhhhhh
Confidence            57788999988 555542  2 4577899999999873 2221111111233 4888888888 443  24556778889


Q ss_pred             ceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374          271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS  309 (313)
Q Consensus       271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  309 (313)
                      +.||+++| .+.+..-....-.+..|+.|.|.||.=||.
T Consensus       257 ~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  257 YGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            99999987 555544333333456788889988887774

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.98  E-value=4.8e-06  Score=48.54  Aligned_cols=38  Identities=24%  Similarity=0.466  Sum_probs=29.1

Q ss_pred             CchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcc
Q 021374           21 TVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLW   59 (313)
Q Consensus        21 ~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~   59 (313)
                      +++|++.+||+||+..|+..++.||++|++++ ..+..|
T Consensus         6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~-~~~~~~   43 (48)
T PF00646_consen    6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLV-DSPRLW   43 (48)
T ss_dssp             S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH-TTHHHH
T ss_pred             CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHH-cCCCcc
Confidence            44489999999999999999999999999985 433333

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.98  E-value=1.1e-06  Score=72.76  Aligned_cols=65  Identities=22%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             HhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       238 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .+..+|+|++|++++| .++...-..+.+...+++|.|..| .+... -..++++..+|+.|+|++|.
T Consensus       269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             HHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecCCe
Confidence            3567899999999998 888776677888899999999988 44322 23345678899999999885

>PLN03150 hypothetical protein; Provisional

Probab=97.96  E-value=1.7e-05  Score=72.74  Aligned_cols=112  Identities=16%  Similarity=0.143  Sum_probs=78.4

Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS  272 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  272 (313)
                      .++.|+|.++ .+.. .+..-+..+++|+.|+++++ .+.......++.+++|+.|+|++| .++......++++++|++
T Consensus       419 ~v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence            3677888773 4433 23334577899999999884 555555556788899999999998 676666667888999999


Q ss_pred             eeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374          273 LNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS  309 (313)
Q Consensus       273 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  309 (313)
                      |++++| .++......+.....++..+++.+|..-|.
T Consensus       495 L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        495 LNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             EECcCC-cccccCChHHhhccccCceEEecCCccccC
Confidence            999988 566554444443345677888887754443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.95  E-value=1.5e-06  Score=69.51  Aligned_cols=125  Identities=22%  Similarity=0.269  Sum_probs=74.6

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh-cCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAH  244 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~  244 (313)
                      ..|+++++++. .++.  +..-.+-.|.++.|++++ +.+..  +.. +..+++|+.|++++. .++.  ..... ++-+
T Consensus       284 q~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~-N~i~~--v~n-La~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGN  353 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQ-NRIRT--VQN-LAELPQLQLLDLSGN-LLAE--CVGWHLKLGN  353 (490)
T ss_pred             hhhhhcccccc-chhh--hhhhhhhccceeEEeccc-cceee--ehh-hhhcccceEeecccc-hhHh--hhhhHhhhcC
Confidence            45677777763 3322  222233357777777777 44443  222 455677778877762 2221  12221 4567


Q ss_pred             CCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCCh-HHHHHHHHhCCCccEeecCCcc
Q 021374          245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITD-VGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       245 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +++|.+.+| .+.  .+..+.++-+|..||+++| .+.. +.+..+. .+|.|+.+.+.+|.
T Consensus       354 IKtL~La~N-~iE--~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG-~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  354 IKTLKLAQN-KIE--TLSGLRKLYSLVNLDLSSN-QIEELDEVNHIG-NLPCLETLRLTGNP  410 (490)
T ss_pred             Eeeeehhhh-hHh--hhhhhHhhhhheecccccc-chhhHHHhcccc-cccHHHHHhhcCCC
Confidence            777777776 332  2344566788999999988 5543 4455454 68889888887774

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.92  E-value=8e-06  Score=76.99  Aligned_cols=134  Identities=23%  Similarity=0.209  Sum_probs=73.9

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      ++.++.|-+..+..    .+..+...++..++.|+.|++++|....  .++...+.+-+|++|+++++ .+.  .++.-.
T Consensus       544 ~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t-~I~--~LP~~l  614 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT-GIS--HLPSGL  614 (889)
T ss_pred             CCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC-Ccc--ccchHH
Confidence            34455555544321    2333334445677899999998753322  22233356678888888877 554  233334


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA  227 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  227 (313)
                      ..++.|.+|++........  ...+...+++|++|.+.......+.....-+.++.+|+.+.+..
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             HHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            5567788888876543322  23344447888888887632112212222235556666666543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.86  E-value=1.9e-06  Score=53.13  Aligned_cols=39  Identities=31%  Similarity=0.309  Sum_probs=16.8

Q ss_pred             hhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      +..+++|++|++++| .++.-....+.++++|++|++++|
T Consensus        21 f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   21 FSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             HcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            334444444444444 333322223444444555554444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.86  E-value=1.4e-06  Score=53.83  Aligned_cols=60  Identities=20%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      |+|++|++++| .++.-....+.++++|++|++++| .++..... .+.++++|+.|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence            68999999998 777655456778999999999988 77644333 35589999999999874

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.79  E-value=2.4e-05  Score=72.52  Aligned_cols=14  Identities=14%  Similarity=-0.111  Sum_probs=9.2

Q ss_pred             hCCCccEeecCCcc
Q 021374          292 GCSSLEFLSSGAEM  305 (313)
Q Consensus       292 ~~~~L~~L~l~~~~  305 (313)
                      .+++|+.|++++|.
T Consensus       443 ~L~~L~~LdLs~N~  456 (788)
T PRK15387        443 HLSSETTVNLEGNP  456 (788)
T ss_pred             hccCCCeEECCCCC
Confidence            45667777776664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.66  E-value=1.8e-07  Score=68.51  Aligned_cols=37  Identities=27%  Similarity=0.227  Sum_probs=16.2

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCC
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGA  253 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  253 (313)
                      +.+++|+.|.+....-+  ..+..++.+..|+.|.+.+|
T Consensus       147 g~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccc
Confidence            34455555555442111  11233444445555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.65  E-value=4.5e-06  Score=74.52  Aligned_cols=107  Identities=21%  Similarity=0.157  Sum_probs=68.2

Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      +-++.|+.|+++.. .+++  ...+ ..|+.|++|+|++ +.+..  ++.+...--+|+.|.+.+. .+  ..+..+.++
T Consensus       184 qll~ale~LnLshN-k~~~--v~~L-r~l~~LkhLDlsy-N~L~~--vp~l~~~gc~L~~L~lrnN-~l--~tL~gie~L  253 (1096)
T KOG1859|consen  184 QLLPALESLNLSHN-KFTK--VDNL-RRLPKLKHLDLSY-NCLRH--VPQLSMVGCKLQLLNLRNN-AL--TTLRGIENL  253 (1096)
T ss_pred             HHHHHhhhhccchh-hhhh--hHHH-Hhccccccccccc-chhcc--ccccchhhhhheeeeeccc-HH--HhhhhHHhh
Confidence            44578888899884 4444  3333 3488999999988 44432  2222111123888888773 22  346667788


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      .+|+.|++++|-......+..+..+..|+.|.|.+|+
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            8999999988833333445555666778888888874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.56  E-value=0.00011  Score=68.35  Aligned_cols=32  Identities=22%  Similarity=0.090  Sum_probs=19.7

Q ss_pred             CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       268 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .+|+.|++++| .++...     ...++|+.|++++|.
T Consensus       382 ~~L~~LdLs~N-~Lt~LP-----~l~s~L~~LdLS~N~  413 (788)
T PRK15387        382 SGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR  413 (788)
T ss_pred             cccceEEecCC-cccCCC-----CcccCCCEEEccCCc
Confidence            46788888777 454211     123567788877764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.55  E-value=0.00011  Score=68.31  Aligned_cols=32  Identities=13%  Similarity=0.231  Sum_probs=15.8

Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      ++|+.|++++| .++.. ...+  .++|++|++++|
T Consensus       346 ~sL~~L~Ls~N-~L~~L-P~~l--p~~L~~LdLs~N  377 (754)
T PRK15370        346 PELQVLDVSKN-QITVL-PETL--PPTITTLDVSRN  377 (754)
T ss_pred             CcccEEECCCC-CCCcC-Chhh--cCCcCEEECCCC
Confidence            45666666665 33321 1111  245666666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=4.1e-05  Score=60.84  Aligned_cols=114  Identities=25%  Similarity=0.300  Sum_probs=68.2

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      .+.++|+.-|| .++|..   +...+|.|+.|.|+- +.++.  +.. +..|++|++|++.....-.-..+.++.++|+|
T Consensus        19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSv-NkIss--L~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSV-NKISS--LAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHhhhhcccCC-CccHHH---HHHhcccceeEEeec-ccccc--chh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            45677777776 465543   334578888888876 45553  222 46778888888866322233445666778888


Q ss_pred             CEEecCCCCCCChHHHH----HhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374          246 KFLDLCGAQNLSDEGLA----CIAKCKNLVSLNLTWCVRITDVGVMAIA  290 (313)
Q Consensus       246 ~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~l~  290 (313)
                      ++|+|..|+.....+-.    .+.-+|+|+.||   +..++.+.+..-.
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~AL  136 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEAL  136 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHHH
Confidence            88888777655443321    133467777775   2356665554433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.37  E-value=0.00033  Score=65.26  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=54.0

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      ++|+.|++++| .++.  ++.  .-.++|+.|+++++ .+.. ....+  .++|++|++++| .++.- ...+.  ..|+
T Consensus       325 ~sL~~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N-~L~~-LP~~l--p~~L~~LdLs~N-~Lt~L-P~~l~--~sL~  391 (754)
T PRK15370        325 PGLKTLEAGEN-ALTS--LPA--SLPPELQVLDVSKN-QITV-LPETL--PPTITTLDVSRN-ALTNL-PENLP--AALQ  391 (754)
T ss_pred             ccceeccccCC-cccc--CCh--hhcCcccEEECCCC-CCCc-CChhh--cCCcCEEECCCC-cCCCC-CHhHH--HHHH
Confidence            46777777664 3332  111  11357888888774 3331 11112  257888888887 44431 11121  2567


Q ss_pred             eeeccCCCCCCh--HHHHHHHHhCCCccEeecCCcc
Q 021374          272 SLNLTWCVRITD--VGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       272 ~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .|++++| .++.  ..+..+...+|++..|++.+|.
T Consensus       392 ~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        392 IMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            7777776 4432  2344444455677777777664

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.28  E-value=0.00036  Score=34.48  Aligned_cols=24  Identities=50%  Similarity=0.843  Sum_probs=17.1

Q ss_pred             CCCCceeeccCCCCCChHHHHHHH
Q 021374          267 CKNLVSLNLTWCVRITDVGVMAIA  290 (313)
Q Consensus       267 ~~~L~~L~l~~~~~~~~~~~~~l~  290 (313)
                      |++|++|+|++|+.++|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            467777777777777777776665

>PLN03150 hypothetical protein; Provisional

Probab=97.25  E-value=0.00039  Score=64.00  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=65.0

Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                      .++.|+++++ .+.......+..+++|+.|+|++| .++......+..+++|+.|++++| .++......+. .+++|+.
T Consensus       419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRI  494 (623)
T ss_pred             EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCE
Confidence            3778888873 555555667888999999999999 666555556888999999999998 77655444444 6899999


Q ss_pred             eecCCcc
Q 021374          299 LSSGAEM  305 (313)
Q Consensus       299 L~l~~~~  305 (313)
                      |++++|.
T Consensus       495 L~Ls~N~  501 (623)
T PLN03150        495 LNLNGNS  501 (623)
T ss_pred             EECcCCc
Confidence            9999885

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.24  E-value=0.00055  Score=38.72  Aligned_cols=38  Identities=32%  Similarity=0.394  Sum_probs=23.3

Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCCh
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITD  283 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  283 (313)
                      ++|++|++++| .+++-. ..++++++|++|++++| .+++
T Consensus         1 ~~L~~L~l~~N-~i~~l~-~~l~~l~~L~~L~l~~N-~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLP-PELSNLPNLETLNLSNN-PISD   38 (44)
T ss_dssp             TT-SEEEETSS-S-SSHG-GHGTTCTTSSEEEETSS-CCSB
T ss_pred             CcceEEEccCC-CCcccC-chHhCCCCCCEEEecCC-CCCC
Confidence            46777777777 565432 23677777777777777 5543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.20  E-value=7.8e-05  Score=65.67  Aligned_cols=210  Identities=27%  Similarity=0.431  Sum_probs=120.1

Q ss_pred             cCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCC----CCcEEEecCCcccCHHHHHHH
Q 021374           86 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP----ELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        86 l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      +..+.+.++ .+.+.....+... ....+.|+.|+++++ .+.+.+...+....+    .|++|.+..| .++.++...+
T Consensus        89 l~~L~L~~~-~l~~~~~~~l~~~-l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l  164 (478)
T KOG4308|consen   89 LLHLSLANN-RLGDRGAEELAQA-LKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL  164 (478)
T ss_pred             HHHhhhhhC-ccccchHHHHHHH-hcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence            566666665 3444455544443 456677888888885 566666666655543    3566677766 6666654443


Q ss_pred             Hh---cCCCCcEEeccCCcccchHHHHHHHH-------hCCCCcEEecCCCCCCCHHHHHH---HHhhCCC-CCEEEeCC
Q 021374          162 VK---NCKHIIDLNLSGCKNLLDKSLQLIAD-------NYQELESLNLTRCVKLTDGGLQK---ILIKCSS-LRSLNLYA  227 (313)
Q Consensus       162 ~~---~~~~L~~L~l~~~~~~~~~~l~~l~~-------~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~-L~~L~l~~  227 (313)
                      ..   ....++.++++.+. +.+.+...+..       ...++++|++.+| .++......   .+...++ +..|++..
T Consensus       165 ~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~  242 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS  242 (478)
T ss_pred             HHHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence            33   24566777777653 33333332222       2346778888886 444433332   2333344 55677766


Q ss_pred             CCCCCHHHHHHhh----cC-CCCCEEecCCCCCCChHHHHHhh----CCCCCceeeccCCCCCChHHHHHHHHhC---CC
Q 021374          228 LSGFTDEAYKKIS----LL-AHLKFLDLCGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVGVMAIAEGC---SS  295 (313)
Q Consensus       228 ~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~---~~  295 (313)
                       ..+.+.++..+.    .. +.+++++++.| .+++.+...+.    .++.++++.+.++ .+++.+...+.+..   ..
T Consensus       243 -n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~  319 (478)
T KOG4308|consen  243 -NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTP  319 (478)
T ss_pred             -cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhccc
Confidence             455555555443    33 56788888888 56665544443    5778888888776 77777665554432   24


Q ss_pred             ccEeecCCc
Q 021374          296 LEFLSSGAE  304 (313)
Q Consensus       296 L~~L~l~~~  304 (313)
                      +..+.+.++
T Consensus       320 ~~~~~l~~~  328 (478)
T KOG4308|consen  320 LLHLVLGGT  328 (478)
T ss_pred             chhhhcccc
Confidence            444444433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.05  E-value=0.00034  Score=61.75  Aligned_cols=13  Identities=23%  Similarity=0.181  Sum_probs=6.7

Q ss_pred             cCCCCCEEecCCC
Q 021374          241 LLAHLKFLDLCGA  253 (313)
Q Consensus       241 ~~~~L~~L~l~~~  253 (313)
                      .++.++.+.++.|
T Consensus       288 ~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  288 SCRQLEELSLSNN  300 (478)
T ss_pred             hhHHHHHhhcccC
Confidence            4445555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.04  E-value=0.00093  Score=63.46  Aligned_cols=60  Identities=25%  Similarity=0.222  Sum_probs=26.5

Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA  227 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  227 (313)
                      ..+|.|+.|++++|..++.  ++.....+-+|+.|++++ ..+.  .++.-+.++..|.+|++..
T Consensus       568 ~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~--~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGIS--HLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             hhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCcc--ccchHHHHHHhhheecccc
Confidence            3455555555555433222  333333344555555555 2333  1222234444455555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.87  E-value=0.001  Score=57.97  Aligned_cols=146  Identities=26%  Similarity=0.315  Sum_probs=63.1

Q ss_pred             CCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374          141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL  220 (313)
Q Consensus       141 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  220 (313)
                      +|+.|+++++ .+...  ..-...+++|+.|+++++ .+.+  +.......++|+.|++++ +.+.+  ++.......+|
T Consensus       141 nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~~L~~L~ls~-N~i~~--l~~~~~~~~~L  211 (394)
T COG4886         141 NLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLSNLNNLDLSG-NKISD--LPPEIELLSAL  211 (394)
T ss_pred             hccccccccc-chhhh--hhhhhccccccccccCCc-hhhh--hhhhhhhhhhhhheeccC-Ccccc--Cchhhhhhhhh
Confidence            6666666655 33321  111234666666666664 3333  222221356666666666 34433  22211233345


Q ss_pred             CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374          221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS  300 (313)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~  300 (313)
                      +.|.+++...+  ..+..+..+.++..+.+.++ .+.+. ...++..+++++|+++++ .+++...   .....+++.|+
T Consensus       212 ~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n-~~~~~-~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~  283 (394)
T COG4886         212 EELDLSNNSII--ELLSSLSNLKNLSGLELSNN-KLEDL-PESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELD  283 (394)
T ss_pred             hhhhhcCCcce--ecchhhhhcccccccccCCc-eeeec-cchhccccccceeccccc-ccccccc---ccccCccCEEe
Confidence            55555552111  11222334444444444444 22210 122344455555555554 3333222   22334555555


Q ss_pred             cCC
Q 021374          301 SGA  303 (313)
Q Consensus       301 l~~  303 (313)
                      +++
T Consensus       284 ~s~  286 (394)
T COG4886         284 LSG  286 (394)
T ss_pred             ccC
Confidence            544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.0004  Score=55.42  Aligned_cols=110  Identities=23%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      .+.++|+.-|| .+++..+   +..+|.|+.|.|+-. .++.  +..+. .|.+|++|.|.. +.+.+..=...+.++|+
T Consensus        19 ~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvN-kIss--L~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVN-KISS--LAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHhhhhcccCC-CccHHHH---HHhcccceeEEeecc-cccc--chhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCch
Confidence            45677887777 7777654   456888888888873 4433  33333 378888888887 56666444455788888


Q ss_pred             CCEEEeCCCCCC----CHHHHHHhhcCCCCCEEecCCCCCCChHHH
Q 021374          220 LRSLNLYALSGF----TDEAYKKISLLAHLKFLDLCGAQNLSDEGL  261 (313)
Q Consensus       220 L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  261 (313)
                      |+.|.+...+=.    .+.-...+..+|+|+.|+   |..++...+
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEl  132 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEEL  132 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHH
Confidence            888888652211    112233455788888875   345665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.77  E-value=0.0007  Score=56.86  Aligned_cols=40  Identities=23%  Similarity=0.205  Sum_probs=26.6

Q ss_pred             HhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       238 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      .+.++.+|.+|++.+| .+.. ....++++++|++|++.+++
T Consensus       500 ~l~nm~nL~tLDL~nN-dlq~-IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNN-DLQQ-IPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             HhhhhhhcceeccCCC-chhh-CChhhccccceeEEEecCCc
Confidence            4456677888888777 3322 34456778888888888773

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.64  E-value=0.0029  Score=31.17  Aligned_cols=24  Identities=46%  Similarity=0.767  Sum_probs=16.3

Q ss_pred             CCCCCEEecCCCCCCChHHHHHhh
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIA  265 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~  265 (313)
                      +++|++|+|++|..++|.++..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            456777777777777777666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.63  E-value=0.00065  Score=53.63  Aligned_cols=84  Identities=31%  Similarity=0.383  Sum_probs=42.0

Q ss_pred             CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhhCCCCCEEEeCCCCCC--CHHHHHHhhc
Q 021374          165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGF--TDEAYKKISL  241 (313)
Q Consensus       165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~  241 (313)
                      +|+|++|.++....-....+..+...+|+|+++++++ +.+.+ ..+.. +..+++|..|++.+|...  .+.--..+.-
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-hhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            5667777776642222334555555567777777776 44443 11111 344556666666655322  2222222334


Q ss_pred             CCCCCEEec
Q 021374          242 LAHLKFLDL  250 (313)
Q Consensus       242 ~~~L~~L~l  250 (313)
                      +|+|++|+-
T Consensus       142 l~~L~~LD~  150 (260)
T KOG2739|consen  142 LPSLKYLDG  150 (260)
T ss_pred             hhhhccccc
Confidence            555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.58  E-value=0.0031  Score=54.05  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=74.9

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .+.+++.|++++| .+...+     .--++|++|.+.+|..++.  +....  .++|++|.+.+|..+..     +   .
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~s-----L---P  111 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISG-----L---P  111 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccc-----c---c
Confidence            4478889999887 433322     1224688898887755422  11111  25788888888754431     1   3


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhC-CCCCEEEeCCCCCCCHHHHHHhh-cC-CCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKC-SSLRSLNLYALSGFTDEAYKKIS-LL-AHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~-~~-~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      ++|+.|++.. .....  +    ..+ ++|+.|.+.+......   ..+. .+ ++|++|.+++|..+.-  ...+  ..
T Consensus       112 ~sLe~L~L~~-n~~~~--L----~~LPssLk~L~I~~~n~~~~---~~lp~~LPsSLk~L~Is~c~~i~L--P~~L--P~  177 (426)
T PRK15386        112 ESVRSLEIKG-SATDS--I----KNVPNGLTSLSINSYNPENQ---ARIDNLISPSLKTLSLTGCSNIIL--PEKL--PE  177 (426)
T ss_pred             cccceEEeCC-CCCcc--c----ccCcchHhheeccccccccc---cccccccCCcccEEEecCCCcccC--cccc--cc
Confidence            5788888765 23221  1    223 4677777743221110   0011 12 5899999988854321  0112  25


Q ss_pred             CCceeeccCC
Q 021374          269 NLVSLNLTWC  278 (313)
Q Consensus       269 ~L~~L~l~~~  278 (313)
                      +|++|+++.+
T Consensus       178 SLk~L~ls~n  187 (426)
T PRK15386        178 SLQSITLHIE  187 (426)
T ss_pred             cCcEEEeccc
Confidence            8888888764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.0008  Score=53.12  Aligned_cols=86  Identities=27%  Similarity=0.370  Sum_probs=42.9

Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccch-HHHHHHHHhCCCCcEEecCCCCCCCHH-HHHHHHhh
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRCVKLTDG-GLQKILIK  216 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  216 (313)
                      +|+|++|.++.+..-...++..++..+|+|++|++++. .+.+ ..+..+.. +.+|..|++..|....-. .=..++.-
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~-l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE-LENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhh-hcchhhhhcccCCccccccHHHHHHHH
Confidence            45666666665533333445555555666666666663 3332 22332322 566667777665332211 11233444


Q ss_pred             CCCCCEEEeC
Q 021374          217 CSSLRSLNLY  226 (313)
Q Consensus       217 ~~~L~~L~l~  226 (313)
                      +++|+.|+-.
T Consensus       142 l~~L~~LD~~  151 (260)
T KOG2739|consen  142 LPSLKYLDGC  151 (260)
T ss_pred             hhhhcccccc
Confidence            5666665554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.48  E-value=0.00072  Score=51.37  Aligned_cols=107  Identities=18%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374          165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH  244 (313)
Q Consensus       165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  244 (313)
                      ..+...+++++.. +..  +.. ..++++|..|.+.+ +.++.-+ +.+..-+++|+.|.+.+.+-..-..+..++.+|+
T Consensus        41 ~d~~d~iDLtdNd-l~~--l~~-lp~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDND-LRK--LDN-LPHLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccc-hhh--ccc-CCCccccceEEecC-Ccceeec-cchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            3466777777742 211  221 23478899999988 5665411 1123346889999998843333344666778999


Q ss_pred             CCEEecCCCCCCChH-H--HHHhhCCCCCceeeccCC
Q 021374          245 LKFLDLCGAQNLSDE-G--LACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       245 L~~L~l~~~~~~~~~-~--~~~l~~~~~L~~L~l~~~  278 (313)
                      |++|.+-+|+ ++.. .  ...+..+|+|+.||+...
T Consensus       115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            9999998884 4332 2  112456899999998754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.40  E-value=0.0017  Score=54.60  Aligned_cols=109  Identities=20%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             HhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          189 DNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       189 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      ..+++|..|++++ +.+.+  ++.-......|+.|+++.. ++. ..+..+-....++++-.+++ .+..-....+.++.
T Consensus       432 ~~l~kLt~L~L~N-N~Ln~--LP~e~~~lv~Lq~LnlS~N-rFr-~lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  432 SQLQKLTFLDLSN-NLLND--LPEEMGSLVRLQTLNLSFN-RFR-MLPECLYELQTLETLLASNN-QIGSVDPSGLKNMR  505 (565)
T ss_pred             Hhhhcceeeeccc-chhhh--cchhhhhhhhhheeccccc-ccc-cchHHHhhHHHHHHHHhccc-cccccChHHhhhhh
Confidence            3456666666666 33332  2212233444666666652 221 11111112223444444444 44443344466788


Q ss_pred             CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374          269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN  306 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  306 (313)
                      +|.+||+.++ .+  ..+..+..+|.+|++|++.+|.+
T Consensus       506 nL~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  506 NLTTLDLQNN-DL--QQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hcceeccCCC-ch--hhCChhhccccceeEEEecCCcc
Confidence            9999999887 22  23344556889999999999853

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.23  E-value=0.0076  Score=34.04  Aligned_cols=37  Identities=30%  Similarity=0.339  Sum_probs=21.7

Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCC
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLS  257 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  257 (313)
                      ++|++|+++++ .+++. ...++++++|++|++++| .++
T Consensus         1 ~~L~~L~l~~N-~i~~l-~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDL-PPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             TT-SEEEETSS-S-SSH-GGHGTTCTTSSEEEETSS-CCS
T ss_pred             CcceEEEccCC-CCccc-CchHhCCCCCCEEEecCC-CCC
Confidence            45677777763 45432 223677777777777777 454

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.15  E-value=5.7e-05  Score=55.71  Aligned_cols=128  Identities=23%  Similarity=0.226  Sum_probs=80.2

Q ss_pred             CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374          165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH  244 (313)
Q Consensus       165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  244 (313)
                      +.+++.|.++.. .++.. -+.++. +.+|+.|++.+ +.+.+  ++.-++.+++|+.|+++- ..+ ...++.++++|.
T Consensus        32 ~s~ITrLtLSHN-Kl~~v-ppnia~-l~nlevln~~n-nqie~--lp~~issl~klr~lnvgm-nrl-~~lprgfgs~p~  103 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVV-PPNIAE-LKNLEVLNLSN-NQIEE--LPTSISSLPKLRILNVGM-NRL-NILPRGFGSFPA  103 (264)
T ss_pred             hhhhhhhhcccC-ceeec-CCcHHH-hhhhhhhhccc-chhhh--cChhhhhchhhhheecch-hhh-hcCccccCCCch
Confidence            345666777763 34331 122333 67899999988 56654  444467789999999975 222 234567789999


Q ss_pred             CCEEecCCCCCCChHHH-HHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          245 LKFLDLCGAQNLSDEGL-ACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       245 L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      |+.|++.+| .+....+ ..+..++.|+.|+++++. +... ..++. .+.+|+-|.+..|
T Consensus       104 levldltyn-nl~e~~lpgnff~m~tlralyl~dnd-fe~l-p~dvg-~lt~lqil~lrdn  160 (264)
T KOG0617|consen  104 LEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDND-FEIL-PPDVG-KLTNLQILSLRDN  160 (264)
T ss_pred             hhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCC-cccC-Chhhh-hhcceeEEeeccC
Confidence            999999988 5655432 224456788899998872 2111 11122 3567777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.85  E-value=0.0086  Score=52.19  Aligned_cols=147  Identities=26%  Similarity=0.337  Sum_probs=93.0

Q ss_pred             CCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCC
Q 021374          115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL  194 (313)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L  194 (313)
                      +|+.|++++. .+....  .-...+++|+.|+++.+ .+.+.  .......++|+.|.+++. .+.+  ++........|
T Consensus       141 nL~~L~l~~N-~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l--~~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L  211 (394)
T COG4886         141 NLKELDLSDN-KIESLP--SPLRNLPNLKNLDLSFN-DLSDL--PKLLSNLSNLNNLDLSGN-KISD--LPPEIELLSAL  211 (394)
T ss_pred             hccccccccc-chhhhh--hhhhccccccccccCCc-hhhhh--hhhhhhhhhhhheeccCC-cccc--Cchhhhhhhhh
Confidence            7888988874 333221  12367899999999988 55543  222225789999999984 4544  33332234559


Q ss_pred             cEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceee
Q 021374          195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLN  274 (313)
Q Consensus       195 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  274 (313)
                      +.|.+++...+..   ........++..+.+.+ ..+.+ ....++.++++++|++++| .+++...  ++...+|+.|+
T Consensus       212 ~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~-n~~~~-~~~~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~  283 (394)
T COG4886         212 EELDLSNNSIIEL---LSSLSNLKNLSGLELSN-NKLED-LPESIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELD  283 (394)
T ss_pred             hhhhhcCCcceec---chhhhhcccccccccCC-ceeee-ccchhccccccceeccccc-ccccccc--ccccCccCEEe
Confidence            9999988422221   22245566666666554 22221 1345667788999999998 5655322  66788999999


Q ss_pred             ccCC
Q 021374          275 LTWC  278 (313)
Q Consensus       275 l~~~  278 (313)
                      ++++
T Consensus       284 ~s~n  287 (394)
T COG4886         284 LSGN  287 (394)
T ss_pred             ccCc
Confidence            9886

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.61  E-value=0.0048  Score=50.57  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=35.5

Q ss_pred             HHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374           24 KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL   64 (313)
Q Consensus        24 eiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~   64 (313)
                      ++-..||+||+..+++.|..||++|+.+ ...|.+|+.+-.
T Consensus        85 hi~e~ilsyld~~sLc~celv~k~W~r~-l~dg~~WKkLie  124 (499)
T KOG0281|consen   85 HIAENILSYLDALSLCACELVCKEWKRV-LSDGMLWKKLIE  124 (499)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHHH-hccchHHHHHHH
Confidence            4888899999999999999999999998 488999987643

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.47  E-value=0.012  Score=28.26  Aligned_cols=21  Identities=43%  Similarity=0.547  Sum_probs=10.6

Q ss_pred             CCCceeeccCCCCCChHHHHHH
Q 021374          268 KNLVSLNLTWCVRITDVGVMAI  289 (313)
Q Consensus       268 ~~L~~L~l~~~~~~~~~~~~~l  289 (313)
                      ++|++|+|++| .+++.++..+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHh
Confidence            45556666555 4555555544

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.33  E-value=0.0059  Score=53.57  Aligned_cols=127  Identities=23%  Similarity=0.263  Sum_probs=74.8

Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC  217 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  217 (313)
                      .+..++.+.+..+ .+..  ...-...+.+|+.|++.+. .+..  +......+++|+.|++++ +.+..  +.. +..+
T Consensus        70 ~l~~l~~l~l~~n-~i~~--~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~--i~~-l~~l  139 (414)
T KOG0531|consen   70 SLTSLKELNLRQN-LIAK--ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITK--LEG-LSTL  139 (414)
T ss_pred             HhHhHHhhccchh-hhhh--hhcccccccceeeeecccc-chhh--cccchhhhhcchheeccc-ccccc--ccc-hhhc
Confidence            3445555555544 3322  1111134578888888773 3322  333133478899999988 56654  222 2455


Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHH-HHhhCCCCCceeeccCCC
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL-ACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~  279 (313)
                      +.|+.|++.++ .+..  +..+..++.|+.+++++| .+++... . +..+.+++.+++.++.
T Consensus       140 ~~L~~L~l~~N-~i~~--~~~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  140 TLLKELNLSGN-LISD--ISGLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             cchhhheeccC-cchh--ccCCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence            66888888873 3432  344445778888888888 4444322 2 4667888888888873

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.21  E-value=0.024  Score=48.75  Aligned_cols=135  Identities=21%  Similarity=0.262  Sum_probs=82.6

Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK  216 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  216 (313)
                      ..|++++.|++++| .+...  +   .-.++|++|.+.+|..++.  ++...  .++|+.|++++|..+..     +   
T Consensus        49 ~~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~s-----L---  110 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISG-----L---  110 (426)
T ss_pred             HHhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccc-----c---
Confidence            44799999999988 55432  2   1234799999999876533  22211  35899999999855431     1   


Q ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhcC-CCCCEEecCCCCCCChHHHHHhh-C-CCCCceeeccCCCCCChHHHHHHHHhC
Q 021374          217 CSSLRSLNLYALSGFTDEAYKKISLL-AHLKFLDLCGAQNLSDEGLACIA-K-CKNLVSLNLTWCVRITDVGVMAIAEGC  293 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~-~-~~~L~~L~l~~~~~~~~~~~~~l~~~~  293 (313)
                      .++|+.|.+.+ .....     +..+ ++|+.|.+.++.......   +. . .++|++|++++|..+.      +...+
T Consensus       111 P~sLe~L~L~~-n~~~~-----L~~LPssLk~L~I~~~n~~~~~~---lp~~LPsSLk~L~Is~c~~i~------LP~~L  175 (426)
T PRK15386        111 PESVRSLEIKG-SATDS-----IKNVPNGLTSLSINSYNPENQAR---IDNLISPSLKTLSLTGCSNII------LPEKL  175 (426)
T ss_pred             ccccceEEeCC-CCCcc-----cccCcchHhheeccccccccccc---cccccCCcccEEEecCCCccc------Ccccc
Confidence            35688888864 22221     2333 478888885432111111   11 1 2689999999986442      12223


Q ss_pred             -CCccEeecCCc
Q 021374          294 -SSLEFLSSGAE  304 (313)
Q Consensus       294 -~~L~~L~l~~~  304 (313)
                       ++|+.|+++.+
T Consensus       176 P~SLk~L~ls~n  187 (426)
T PRK15386        176 PESLQSITLHIE  187 (426)
T ss_pred             cccCcEEEeccc
Confidence             38999998764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.10  E-value=0.022  Score=43.53  Aligned_cols=106  Identities=21%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh-HHHHHhhCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD-EGLACIAKCKN  269 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~  269 (313)
                      ..+...+++++. .+..   ...+..++.|.+|.+++ ..++......-..+|+|+.|.+.+| .+.. ..+..++.||+
T Consensus        41 ~d~~d~iDLtdN-dl~~---l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDN-DLRK---LDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceeccccc-chhh---cccCCCccccceEEecC-CcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCc
Confidence            456778888873 3332   12245678899999988 5676655544556789999999998 4443 33566778999


Q ss_pred             CceeeccCCCCCChHHHH--HHHHhCCCccEeecCC
Q 021374          270 LVSLNLTWCVRITDVGVM--AIAEGCSSLEFLSSGA  303 (313)
Q Consensus       270 L~~L~l~~~~~~~~~~~~--~l~~~~~~L~~L~l~~  303 (313)
                      |++|.+-++ .++...-+  .+....|+|+.||+.+
T Consensus       115 L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  115 LEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence            999999988 45444322  1233578999999864

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.90  E-value=0.011  Score=48.09  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             CCch-HHHHHHHcCC-----CccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374           20 ETVP-KVIRIMSTRL-----SQRDIISLLLVSPWLHRTLVSYPSLWLVIDL   64 (313)
Q Consensus        20 ~~~p-eiL~~If~~L-----~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~   64 (313)
                      ..+| |||..||..+     +.+++.+++.|||.|+.. +++|.+|+..-+
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~-~R~~~lwR~aC~  157 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC-ARDPELWRLACL  157 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH-HcChHHHHHHHH
Confidence            4455 7999988764     468899999999999987 699999995543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.68  E-value=0.0083  Score=42.91  Aligned_cols=106  Identities=22%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCC
Q 021374          167 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK  246 (313)
Q Consensus       167 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  246 (313)
                      .+..++++.|.-..-....+.......|+..++++ +.+.+ ....+...++.++.|++.+ +.+.+. +..++.+|.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~-fp~kft~kf~t~t~lNl~~-neisdv-PeE~Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKK-FPKKFTIKFPTATTLNLAN-NEISDV-PEELAAMPALR  103 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhh-CCHHHhhccchhhhhhcch-hhhhhc-hHHHhhhHHhh
Confidence            34555555553211111222222234566666666 33322 1112334455666666665 344433 33366666777


Q ss_pred             EEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          247 FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       247 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      .|+++.|+ +... ...+..+.+|-.|+..++
T Consensus       104 ~lNl~~N~-l~~~-p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  104 SLNLRFNP-LNAE-PRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             hcccccCc-cccc-hHHHHHHHhHHHhcCCCC
Confidence            77777663 2221 222333445555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.46  E-value=0.017  Score=41.37  Aligned_cols=84  Identities=26%  Similarity=0.273  Sum_probs=56.1

Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS  272 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  272 (313)
                      .+..++++.|.-..-......+..-.+|+..++++ +.+.+........+|.+++|++.+| .+.+-..+ ++.++.|+.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRS  104 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhh
Confidence            46677888874332222233345556788888887 3444333333447889999999998 67665433 888999999


Q ss_pred             eeccCCC
Q 021374          273 LNLTWCV  279 (313)
Q Consensus       273 L~l~~~~  279 (313)
                      |++++|+
T Consensus       105 lNl~~N~  111 (177)
T KOG4579|consen  105 LNLRFNP  111 (177)
T ss_pred             cccccCc
Confidence            9999984

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.45  E-value=0.074  Score=26.58  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=15.7

Q ss_pred             CCCceeeccCCCCCChHHHHHHHHh
Q 021374          268 KNLVSLNLTWCVRITDVGVMAIAEG  292 (313)
Q Consensus       268 ~~L~~L~l~~~~~~~~~~~~~l~~~  292 (313)
                      ++|++|+|++| .+++++...+.+.
T Consensus         2 ~~L~~LdL~~N-~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNN-KLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCC-CCCHHHHHHHHHH
Confidence            45677777766 6677776666543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.42  E-value=0.031  Score=26.73  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=15.0

Q ss_pred             CCCCCEEecCCCCCCChHHHHHhh
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIA  265 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~  265 (313)
                      +++|++|+|++| .+++.++..++
T Consensus         1 ~~~L~~L~l~~n-~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNN-QITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred             CCCCCEEEccCC-cCCHHHHHHhC
Confidence            367888888888 58887776664

...

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.26  E-value=0.034  Score=47.20  Aligned_cols=39  Identities=13%  Similarity=0.309  Sum_probs=33.0

Q ss_pred             cccccCCchHHHHHHHcCC-CccchhHHhhccHHHHHHHcc
Q 021374           15 ETWSKETVPKVIRIMSTRL-SQRDIISLLLVSPWLHRTLVS   54 (313)
Q Consensus        15 ~~~~~~~~peiL~~If~~L-~~~~l~~~~~v~~~w~~~~~~   54 (313)
                      .+|+ ++++|+|..|..+| ...|+++.+.||+.||.++..
T Consensus         2 ~~Ws-~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWS-TLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChh-hCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            4697 45558999999999 578999999999999998654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.08  E-value=0.066  Score=47.01  Aligned_cols=112  Identities=28%  Similarity=0.326  Sum_probs=72.8

Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK  216 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  216 (313)
                      ..+.+|+.|++..+ .+..  +......+++|+.|++++. .++.  +..+.. ++.|+.|++.+ +.+..  +.. +..
T Consensus        92 ~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~-l~~L~~L~l~~-N~i~~--~~~-~~~  160 (414)
T KOG0531|consen   92 SKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLST-LTLLKELNLSG-NLISD--ISG-LES  160 (414)
T ss_pred             ccccceeeeecccc-chhh--cccchhhhhcchheecccc-cccc--ccchhh-ccchhhheecc-Ccchh--ccC-Ccc
Confidence            55688999999877 4432  2232356899999999994 5554  333333 56799999999 45543  111 233


Q ss_pred             CCCCCEEEeCCCCCCCHHHH-HHhhcCCCCCEEecCCCCCCChHHH
Q 021374          217 CSSLRSLNLYALSGFTDEAY-KKISLLAHLKFLDLCGAQNLSDEGL  261 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~  261 (313)
                      ++.|+.++++++ .+..... . +..+.+++.+.+.+|.......+
T Consensus       161 l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~  204 (414)
T KOG0531|consen  161 LKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGL  204 (414)
T ss_pred             chhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccch
Confidence            678888888874 4433222 2 56788999999999854433333

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=90.71  E-value=0.42  Score=23.78  Aligned_cols=22  Identities=41%  Similarity=0.604  Sum_probs=17.9

Q ss_pred             CCCCEEecCCCCCCChHHHHHhh
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIA  265 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~  265 (313)
                      ++|++|+|++| .+++.+...++
T Consensus         2 ~~L~~LdL~~N-~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNN-KLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCC-CCCHHHHHHHH
Confidence            57899999998 78888877665

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=88.49  E-value=1.1  Score=40.04  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=20.6

Q ss_pred             HHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCC
Q 021374          188 ADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA  227 (313)
Q Consensus       188 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  227 (313)
                      ....|.+.++++++..-..-+++..+....|+|+.|+|++
T Consensus       214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~  253 (585)
T KOG3763|consen  214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH  253 (585)
T ss_pred             hcCCcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence            3344566666666532222234455555556666666655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.85  E-value=0.41  Score=20.65  Aligned_cols=10  Identities=40%  Similarity=0.454  Sum_probs=4.4

Q ss_pred             CCceeeccCC
Q 021374          269 NLVSLNLTWC  278 (313)
Q Consensus       269 ~L~~L~l~~~  278 (313)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            4445555544

...

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.82  E-value=0.27  Score=44.45  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=39.5

Q ss_pred             ccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374           14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID   63 (313)
Q Consensus        14 ~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~   63 (313)
                      ..++...+|+|+..+||.||+.++++.+++||+.|+.....++..|+...
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~  153 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCR  153 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhh
Confidence            44555444448989999999999999999999999998766676665443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=83.59  E-value=2.2  Score=38.10  Aligned_cols=40  Identities=20%  Similarity=0.330  Sum_probs=22.2

Q ss_pred             CCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 021374          111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  150 (313)
Q Consensus       111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  150 (313)
                      .+.+.+..+.|+++.-..-..+..+....|+|+.|+|+++
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            3445566666655433334455555566666666666655

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=83.11  E-value=0.91  Score=22.16  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=16.7

Q ss_pred             CCceeeccCCCCCChHHHHHHHHhCC
Q 021374          269 NLVSLNLTWCVRITDVGVMAIAEGCS  294 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~~~~l~~~~~  294 (313)
                      +|++|+|.+...-.+..+..+..+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            47778887763334446777776665

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3ogk_B	592	Structure Of Coi1-Ask1 In Complex With Coronatine A		3e-04

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 51/249 (20%)
Query: 80  IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 139
            P    +R+++L +A    + H  L++ KC  +L+ LE+ N+     I D+G+E+++  C
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQ-KC-PNLEVLETRNV-----IGDRGLEVLAQYC 341
Query: 140 PELKVFSIYWNVR----------VTDIGIQHLVKNCKHI--IDLNLSGCKNLLDKSLQLI 187
            +LK   I               V+  G+  L + C+ +  + + +S   N   +S+   
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401
Query: 188 ADNYQELESLNLTRCVKLTD----GGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA 243
             N  +   + L R  ++TD     G++ +LI C  LR    Y   G             
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG------------- 448
Query: 244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA 303
                       L+D GL+ I +    V   L   V  +D G+M  + GC +L+ L    
Sbjct: 449 -----------GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL---- 493
Query: 304 EMNCCSCSH 312
           EM  C  S 
Sbjct: 494 EMRGCCFSE 502

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-28
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-28
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-26
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-23
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  147 bits (373), Expect = 3e-42
 Identities = 60/305 (19%), Positives = 125/305 (40%), Gaps = 29/305 (9%)

Query: 25  VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMN---NAGNRLVAALSIP 81
           ++ I S  L   +++ +  V    +R L S  SLW  +DL   N   +   RL++   I 
Sbjct: 17  LLGIFS-CLCLPELLKVSGVCKRWYR-LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIA 74

Query: 82  RYRHVREINLEFAQDIEDRHLELLKTKC-----------LGSLQDLESLNLNGCQKISDK 130
                  ++   A+      ++ +               L     L++L+L G  ++SD 
Sbjct: 75  FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDP 133

Query: 131 GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQ-LIAD 189
            +  ++     L   ++      ++  +Q L+ +C  + +LNLS C +  +K +Q  +A 
Sbjct: 134 IVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192

Query: 190 NYQELESLNLTRCVK-LTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFL 248
             + +  LNL+   K L    L  ++ +C +L  L+L       ++ +++   L +L+ L
Sbjct: 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 249 DLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCC 308
            L    ++  E L  + +   L +L +     + D  +  + E    L       ++NC 
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHL-------QINCS 303

Query: 309 SCSHI 313
             + I
Sbjct: 304 HFTTI 308

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  114 bits (287), Expect = 1e-28
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 34/251 (13%)

Query: 81  PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP 140
           P    +R+++L +A    + H  L++        +LE L       I D+G+E+++  C 
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQ-----KCPNLEVLETRNV--IGDRGLEVLAQYCK 342

Query: 141 ELKVFSIYW----------NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 190
           +LK   I               V+  G+  L + C+ +  + +    ++ ++SL+ I   
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTY 401

Query: 191 YQELESL---NLTRCVKLT----DGGLQKILIKCSSLRSLNLYALSG-FTDEAYKKI-SL 241
            + L       L R  ++T    D G++ +LI C  LR    Y   G  TD     I   
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 242 LAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
             +++++ L      SDEGL   ++ C NL  L +  C   ++  + A      SL +L 
Sbjct: 462 SPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLW 519

Query: 301 SGAEMNCCSCS 311
               +     S
Sbjct: 520 ----VQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  111 bits (279), Expect = 1e-27
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 24/227 (10%)

Query: 96  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD 155
           + + + L  L      SL+ L +  +    KIS K +E I+  C  L    +     +  
Sbjct: 178 EKDGKWLHELAQHNT-SLEVL-NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235

Query: 156 IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI 215
           +G      N +     +L+    + +K + L          L       +    +  +  
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-----VFPRKLCRLGLSYMGPNEMPILFP 290

Query: 216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLN 274
             + +R L+L      T++    I    +L+ L+      + D GL  +A+ CK L  L 
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLR 348

Query: 275 LTWCV----------RITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS 311
           +               ++  G++A+A+GC  LE+++    +     +
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA----VYVSDIT 391

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 95.4 bits (237), Expect = 5e-22
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 18/211 (8%)

Query: 97  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR---- 152
           +  R L  L   C    Q+LE + +     I+++ +E I +    L  F +    R    
Sbjct: 365 VSQRGLIALAQGC----QELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 153 ---VTDIGIQHLVKNCKHIIDLNLS-GCKNLLDKSLQLIADNYQELESLNLTRCVKLTDG 208
                D G++ L+  CK +           L D  L  I      +  + L      +D 
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDE 478

Query: 209 GLQKILIKCSSLRSLNLYALSGFTDEAYKKI-SLLAHLKFLDLCGAQ-NLSDEGLACIAK 266
           GL +    C +L+ L +     F++ A     + L  L++L + G + +++ + L  +A+
Sbjct: 479 GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537

Query: 267 -CKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296
              N+  +       +   G +   E  + +
Sbjct: 538 PYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 95.0 bits (236), Expect = 7e-22
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 21/201 (10%)

Query: 116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 175
           L SL L G  + +   +   +                     +  +  N + +  ++   
Sbjct: 75  LRSLKLKGKPRAAMFNLIPENWG-------------GYVTPWVTEISNNLRQLKSVHFRR 121

Query: 176 CKNLLDKSLQLIADNY-QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE 234
              + D  L  +A     +LE+L L +C   T  GL  I+  C  +++L +   S    +
Sbjct: 122 MI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 235 AYKKISLLAHLKFL-----DLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMA 288
                 L  H   L      +     +S + L  IA+ C++LVS+ +     +  VG   
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240

Query: 289 IAEGCSSLEFLSSGAEMNCCS 309
            A         S   ++    
Sbjct: 241 AAANLEEFCGGSLNEDIGMPE 261

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 97  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDI 156
           + D  L  +         ++  + L      SD+G+   S  CP L+   +      ++ 
Sbjct: 450 LTDLGLSYIGQYS----PNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC-CFSER 503

Query: 157 GIQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI 215
            I   V     +  L + G + ++  + L  +A  Y  +E +   R  ++   G  + + 
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREME 563

Query: 216 KCSSLRSLNLYALSG 230
             + +  L  Y+L+G
Sbjct: 564 HPAHI--LAYYSLAG 576

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  114 bits (287), Expect = 1e-28
 Identities = 51/307 (16%), Positives = 104/307 (33%), Gaps = 49/307 (15%)

Query: 34  SQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEF 93
             +D  S+ LV    +         W    +   N         +   R+  VR + L+ 
Sbjct: 23  LDKDRNSVSLVCKSWYEI-----ERWCRRKVFIGNCYAVSPATVIR--RFPKVRSVELKG 75

Query: 94  AQDIEDRHLELLK---------TKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKV 144
                D +L                  S   LE + L     ++D  +E+I+ +    KV
Sbjct: 76  KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKV 134

Query: 145 FSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK--NLLDKSLQLIADNYQELESLNLTRC 202
             +      +  G+  +   C+++ +L+L      ++    L    D Y  L SLN++  
Sbjct: 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194

Query: 203 -VKLTDGGLQKILIKCSSLRSLNLYALSGFTD-------------------------EAY 236
             +++   L++++ +C +L+SL L                                 + Y
Sbjct: 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254

Query: 237 KKISLLA--HLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGC 293
             +S+      +   L G  +     L  +   C  L +LNL++   +    ++ +   C
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQC 313

Query: 294 SSLEFLS 300
             L+ L 
Sbjct: 314 PKLQRLW 320

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  107 bits (268), Expect = 4e-26
 Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 31/236 (13%)

Query: 84  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             +  +NL +A       ++LL          L+ L +     I D G+E+++STC +L+
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLC-----QCPKLQRLWV--LDYIEDAGLEVLASTCKDLR 341

Query: 144 V--------FSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 195
                    F +  NV +T+ G+  +   C  +  + L  C+ + + +L  IA N   + 
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMT 400

Query: 196 SLNLTRC---------VKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS-LLAHL 245
              L            ++  D G   I+  C  LR L+L      TD+ ++ I      +
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLLTDKVFEYIGTYAKKM 458

Query: 246 KFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           + L +  A   SD G+  +   C +L  L +  C    D  ++A A    ++  L 
Sbjct: 459 EMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLW 512

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  103 bits (258), Expect = 1e-24
 Identities = 50/268 (18%), Positives = 106/268 (39%), Gaps = 30/268 (11%)

Query: 50  RTLVSYPSLWLVIDLRE--MNNAGNRLVAALSIPRYRHVREINLE-FAQDIEDRHLELLK 106
             + +       +DLRE  +++     ++      Y  +  +N+   A ++    LE L 
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFP-DTYTSLVSLNISCLASEVSFSALERLV 207

Query: 107 TKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD----IGIQHLV 162
           T+C     +L+SL LN    +  + +  +    P+L+                 G+   +
Sbjct: 208 TRC----PNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261

Query: 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRS 222
             CK +    LSG  + +   L  +      L +LNL+    +    L K+L +C  L+ 
Sbjct: 262 SGCKEL--RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQR 318

Query: 223 LNLYALSGFTDEAYKKISLLAH-LKFLDLCGAQ--------NLSDEGLACIAK-CKNLVS 272
           L +       D   + ++     L+ L +  ++         L+++GL  ++  C  L S
Sbjct: 319 LWVL--DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

Query: 273 LNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           + L +C ++T+  ++ IA    ++    
Sbjct: 377 V-LYFCRQMTNAALITIARNRPNMTRFR 403

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 97.3 bits (242), Expect = 9e-23
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 21/192 (10%)

Query: 116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 175
           + S+ L G    +D  +                         I+ +  +   + ++ L  
Sbjct: 68  VRSVELKGKPHFADFNLVPDGWGG-------------YVYPWIEAMSSSYTWLEEIRLKR 114

Query: 176 CKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLY--ALSGFTD 233
              + D  L+LIA +++  + L L+ C   +  GL  I   C +L+ L+L    +   + 
Sbjct: 115 MV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173

Query: 234 EAYKKIS-LLAHLKFLDL-CGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMAIA 290
                       L  L++ C A  +S   L  +   C NL SL L   V +  +    + 
Sbjct: 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA--TLL 231

Query: 291 EGCSSLEFLSSG 302
           +    LE L +G
Sbjct: 232 QRAPQLEELGTG 243

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 92.7 bits (230), Expect = 4e-21
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 43/223 (19%)

Query: 84  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
                  +E    + ++ L  +   C      LES+ L  C+++++  +  I+   P + 
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGC----PKLESV-LYFCRQMTNAALITIARNRPNMT 400

Query: 144 VFSI---------YWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 194
            F +         Y  +   DIG   +V++CK +  L+LSG   L DK  + I    +++
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKM 458

Query: 195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQ 254
           E L++      +D G+  +L  C SLR                          L++    
Sbjct: 459 EMLSVAFA-GDSDLGMHHVLSGCDSLRK-------------------------LEIRDCP 492

Query: 255 NLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE 297
                 LA  +K + + SL ++ C  ++      + +    L 
Sbjct: 493 FGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLN 534

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 21/145 (14%)

Query: 170 DLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS 229
            + +  C  +   ++      + ++ S+ L       D  L            +   +  
Sbjct: 47  KVFIGNCYAVSPATV---IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS-- 101

Query: 230 GFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAK-CKNLVSLNLTWCVRITDVGVMA 288
                     S    L+ + L     ++D+ L  IAK  KN   L L+ C   +  G+ A
Sbjct: 102 ----------SSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150

Query: 289 IAEGCSSLEFLSSGAEMNCCSCSHI 313
           IA  C +L+ L     +       +
Sbjct: 151 IAATCRNLKELD----LRESDVDDV 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 70.3 bits (172), Expect = 8e-15
 Identities = 15/114 (13%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 181 DKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS 240
              L     +  ++++++ T    +   G   +      +  + L       D   +++S
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDS-CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 241 LLAH----LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIA 290
            L +    +  +++    N++D+G+  +   +NL  L L+    + +   +  A
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 5/115 (4%)

Query: 164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKI---LIKCSSL 220
           +   I  ++ +     +        +  Q +E + L +C  + DG L+++        S+
Sbjct: 59  DKYKIQAIDATDSC--IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNL 275
             + + +    TD+    +    +LK+L L     + ++     A   +L SL L
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 96  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVR 152
           D  D  +  +    +  LQ +E + L  C  I D  +E +S        +    I     
Sbjct: 67  DATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126

Query: 153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA 188
           VTD GI  L  + +++  L LS    + +K   + A
Sbjct: 127 VTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQA 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE 304
           ++ +D   +  +   G   +   + +  + L  C  I D  +  +++  +  + +    E
Sbjct: 63  IQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSML---E 118

Query: 305 MNCCSCSHI 313
           M   SC ++
Sbjct: 119 MEIISCGNV 127

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 35/218 (16%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHL----- 161
           L  LQ  + + L+ C  +++   + ISS     P L   ++  N  + D+G+  +     
Sbjct: 24  LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81

Query: 162 VKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKI----L 214
             +CK I  L+L  C  L      +++        L+ L+L+    L D GLQ +    L
Sbjct: 82  TPSCK-IQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLL 138

Query: 215 IKCSSLRSLNLYALSGFTDEAYKKISLL----AHLKFLDLCGAQNLSDEGLACIAKC--- 267
                L  L L      +  + + ++ +       K L +    ++++ G+  + +    
Sbjct: 139 DPQCRLEKLQLEY-CSLSAASCEPLASVLRAKPDFKELTVSN-NDINEAGVRVLCQGLKD 196

Query: 268 --KNLVSLNLTWCVRITDVGVMAIAEG---CSSLEFLS 300
               L +L L  C  +T      +       +SL  L+
Sbjct: 197 SPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELA 233

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 64/294 (21%)

Query: 61  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLN 120
            +D++      +   A L +P  +  + + L+    + +   + + +  L     L  LN
Sbjct: 7   SLDIQC-EELSDARWAEL-LPLLQQCQVVRLDDCG-LTEARCKDI-SSALRVNPALAELN 62

Query: 121 LNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLNL 173
           L   + + D G+  +     +   +++  S+     +T  G   L   ++    + +L+L
Sbjct: 63  LRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 174 SGCKNLLDKSLQLIADNYQE----LESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLY 226
           S    L D  LQL+ +   +    LE L L  C  L+    + +   L      + L + 
Sbjct: 121 SDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVS 178

Query: 227 ----------ALS------------------GFTDEAYKKISLL----AHLKFLDLCGAQ 254
                      L                   G T +  + +  +    A L+ L L G+ 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL-GSN 237

Query: 255 NLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIAEG---CSSLEFLS 300
            L D G+A +          L +L +  C  IT  G   +        SL+ LS
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELS 290

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 30/206 (14%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISST----CPELKVFSIYWNVRVTDIGIQHL---V 162
           + S   L  L L   + + D G+  +          L+   I+    +T  G   L   +
Sbjct: 223 VASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVL 280

Query: 163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQE----LESLNLTRCVKLTDGGLQKI---LI 215
           +  + + +L+L+G   L D+  +L+ +   E    LESL +  C   T          L 
Sbjct: 281 RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLA 338

Query: 216 KCSSLRSLNLYALSGFTDEAYKKIS-LLAH----LKFLDLCGAQNLSDEGLACIA----K 266
           +   L  L +   +   D   +++   L      L+ L L     +SD   + +A     
Sbjct: 339 QNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLA 396

Query: 267 CKNLVSLNLTWCVRITDVGVMAIAEG 292
             +L  L+L+    + D G++ + E 
Sbjct: 397 NHSLRELDLSNN-CLGDAGILQLVES 421

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 57/243 (23%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQHL---V 162
           L +L  L+ L+L+    + D G++++          L+   + +   ++    + L   +
Sbjct: 109 LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVL 166

Query: 163 KNCKHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRCVKLTDGGLQKI---LI 215
           +      +L +S   ++ +  ++++      +  +LE+L L  C  +T    + +   + 
Sbjct: 167 RAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVA 224

Query: 216 KCSSLRSLNLY----------ALS------------------GFTDEAYKKISLL----A 243
             +SLR L L            L                   G T +    +  +     
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 244 HLKFLDLCGAQNLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF 298
            LK L L G   L DEG   + +        L SL +  C   T       +   +   F
Sbjct: 285 SLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRF 342

Query: 299 LSS 301
           L  
Sbjct: 343 LLE 345

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 30/209 (14%)

Query: 116 LESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVKNCKH----I 168
           LE+L L  C  ++      +     +   L+  ++  N ++ D+G+  L     H    +
Sbjct: 201 LEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRL 258

Query: 169 IDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKI---LIKC-SSLR 221
             L +  C  +  K    +       + L+ L+L    +L D G + +   L++    L 
Sbjct: 259 RTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLE 316

Query: 222 SLNLYALSGFTDEAYKKISLL----AHLKFLDLCGAQNLSDEGLACIAK-----CKNLVS 272
           SL + +   FT       S +      L  L +     L D G+  + +        L  
Sbjct: 317 SLWVKS-CSFTAACCSHFSSVLAQNRFLLELQI-SNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 273 LNLTWCVRITDVGVMAIAEGCSSLEFLSS 301
           L L  C  ++D    ++A    +   L  
Sbjct: 375 LWLADC-DVSDSSCSSLAATLLANHSLRE 402

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 25/179 (13%)

Query: 141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESL 197
           +++   I     ++D     L+   +    + L  C  L +   + I+        L  L
Sbjct: 4   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 61

Query: 198 NLTRCVKLTDGGLQKIL----IKCSSLRSLNLYALSGFTDEAYKKISLL----AHLKFLD 249
           NL    +L D G+  +L         ++ L+L      T      +S        L+ L 
Sbjct: 62  NLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 250 LCGAQNLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIAE---GCSSLEFLS 300
           L     L D GL  + +        L  L L +C  ++      +A         + L+
Sbjct: 120 LSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELT 176

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 33/193 (17%), Positives = 70/193 (36%), Gaps = 33/193 (17%)

Query: 107 TKCLGSLQDLESLNLNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQHL- 161
            + L + + L+ L+L G + + D+G  ++         +L+   +      T     H  
Sbjct: 277 CRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFS 334

Query: 162 --VKNCKHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRCVKLTDGGLQKI-- 213
             +   + +++L +S  + L D  ++ +          L  L L  C  ++D     +  
Sbjct: 335 SVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAA 392

Query: 214 -LIKCSSLRSLNLYALSG--FTDEAYKKIS-LLAH----LKFLDLCGAQNLSDEGLACIA 265
            L+   SLR L+   LS     D    ++   +      L+ L L      S+E    + 
Sbjct: 393 TLLANHSLRELD---LSNNCLGDAGILQLVESVRQPGCLLEQLVLYD-IYWSEEMEDRLQ 448

Query: 266 ----KCKNLVSLN 274
                  +L  ++
Sbjct: 449 ALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 16/120 (13%)

Query: 192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL----AHLKF 247
            +++SL++    +L+D    ++L      + + L    G T+   K IS        L  
Sbjct: 3   LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAE 60

Query: 248 LDLCGAQNLSDEGLACIAKC-----KNLVSLNLTWCVRITDVGVMAIAEG---CSSLEFL 299
           L+L     L D G+ C+ +        +  L+L  C  +T  G   ++       +L+ L
Sbjct: 61  LNLRS-NELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQEL 118

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 41/221 (18%), Positives = 72/221 (32%), Gaps = 43/221 (19%)

Query: 108 KCLGSLQDLESLNLNGCQKISDKGIEIIS---------STCPELKVFSIYWNVRVTDIGI 158
           + + S +DLE    +          EI             CP+L    +  N        
Sbjct: 54  ENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQ 111

Query: 159 QHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD------------NYQELESLNLTRCV 203
           + L+        +  L L     L  ++   IA             N   L S+   R  
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN- 169

Query: 204 KLTDGGLQKI---LIKCSSLRSLNLYALSGFTDEAYKKI--SLLAH---LKFLDLCGAQN 255
           +L +G +++          L ++ +   +G   E  + +    LA+   LK LDL     
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDNT- 227

Query: 256 LSDEGLACIAK----CKNLVSLNLTWCVRITDVGVMAIAEG 292
            +  G + +A       NL  L L  C  ++  G  A+ + 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDA 267

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 17/155 (10%), Positives = 36/155 (23%), Gaps = 23/155 (14%)

Query: 168 IIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKI---LIKCSSLR 221
           I   +L     +  +  + +         ++ + L+    +     + +   +     L 
Sbjct: 6   IEGKSLKLD-AITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 63

Query: 222 SLNLYALSG--FTDEAYKKISLLA-------HLKFLDLCGAQNLSDEGLACIA----KCK 268
                 +      DE  + + LL         L  + L             +     K  
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHT 122

Query: 269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA 303
            L  L L     +       IA     L       
Sbjct: 123 PLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAK 156

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 33/212 (15%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPE----LKVFSIYWNVRVTDIGIQH----L 161
                 + SL+L+    +       +          +   ++  N  +           L
Sbjct: 18  TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQIL 75

Query: 162 VKNCKHIIDLNLSGCKNLLDKSLQLIA----DNYQELESLNLTRCVKLTDGGLQKI---L 214
                ++  LNLSG   L  KS   +          +  L+L      +     +     
Sbjct: 76  AAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAF 133

Query: 215 IKC-SSLRSLNLYALSGFTDEAYKKISLL-----AHLKFLDLCGAQNLSDEGLACIAK-- 266
               +S+ SLNL   +    ++  ++  +     A++  L+L G   L+ +  A +AK  
Sbjct: 134 SNLPASITSLNLRG-NDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFL 191

Query: 267 ---CKNLVSLNLTWCVRITDVGVMAIAEGCSS 295
                ++ SL+L+    +       +A   SS
Sbjct: 192 ASIPASVTSLDLSAN-LLGLKSYAELAYIFSS 222

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 39/223 (17%)

Query: 116 LESLNLNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQH----LVKNCKH 167
           +  L+L      S K          +    +   ++  N  +           L     +
Sbjct: 111 ITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPAN 168

Query: 168 IIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRCVKLTDGGLQKI---LIKC-SS 219
           +  LNL G  NL  K+   +A         + SL+L+    L      ++        + 
Sbjct: 169 VNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNH 226

Query: 220 LRSLNLYALSGFTDEAYKKISLL----AHLKFLDL--CGAQNLSDEGLACIAK----CKN 269
           + SLNL   +     + + + LL     HL+ + L     +N+S E    +       + 
Sbjct: 227 VVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 270 LVSLNLTWCVRITDVGVMAIAEG----CSSLEFLSSGAEMNCC 308
           ++ ++      I     + I+          +  S    +N C
Sbjct: 286 IILVDKNGK-EIHPSHSIPISNLIRELSGKADVPSL---LNQC 324

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 23/158 (14%)

Query: 157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRCVKLTDGGLQK 212
            ++        +  L+LS   NL   S   +          + SLNL+    L      +
Sbjct: 13  PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE 70

Query: 213 I---LIKC-SSLRSLNLYALSGFTDEAYKKISLL-----AHLKFLDLCGAQNLSDEGLAC 263
           +   L    +++ SLNL   +  + ++  ++          +  LDL G  + S +  + 
Sbjct: 71  LVQILAAIPANVTSLNLSG-NFLSYKSSDELVKTLAAIPFTITVLDL-GWNDFSSKSSSE 128

Query: 264 IAK-----CKNLVSLNLTWCVRITDVGVMAIAEGCSSL 296
             +       ++ SLNL     +       + +  +++
Sbjct: 129 FKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAI 165

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/125 (14%), Positives = 44/125 (35%), Gaps = 17/125 (13%)

Query: 116 LESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNV--RVTDIGIQHL---VKNCKH 167
           + SLNL     +    +E +     +   L+   + +++   ++    + L     N + 
Sbjct: 227 VVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 168 IIDLNLSGCKNLLDKSLQLIADNYQE----LESLNLTRCVKLTDGGLQ---KILIKCSSL 220
           II ++ +G + +       I++  +E     +  +L     +     Q   + L     L
Sbjct: 286 IILVDKNGKE-IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

Query: 221 RSLNL 225
           R    
Sbjct: 345 RESIQ 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 27/246 (10%)

Query: 84  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 143
             +R++NL   + +      ++          L+ +NL  CQ +   G+  +       +
Sbjct: 72  SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRAR 129

Query: 144 VFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELES 196
              +  N  +     + L      +   I  L LS    L    + ++ +       +  
Sbjct: 130 KLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTH 187

Query: 197 LNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGFTDEAYKKIS--LLAH--LKFLD 249
           L+L     L D GL+ +   L +   L+ LN+   +G  D A   ++     H  L+ L 
Sbjct: 188 LSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAY-NGAGDTAALALARAAREHPSLELLH 245

Query: 250 LCGAQNLSDEGLACIA------KCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA 303
           L     LS EG   +       +    V ++LT    +++   + ++E   +L       
Sbjct: 246 LYF-NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR 304

Query: 304 EMNCCS 309
                 
Sbjct: 305 VQRHLE 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 1e-10
 Identities = 69/371 (18%), Positives = 126/371 (33%), Gaps = 108/371 (29%)

Query: 3   MEEEKVKAAEEEETW-SKETVPKVIRIMST-RLSQRDIISLLLVS------PWLH---RT 51
           M +  +   E +    SK+ V   +R+  T    Q +++   +         +L    +T
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 52  LVSYPSL--WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKC 109
               PS+   + I+ R+     N++ A  ++ R +   ++                  + 
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-----------------RQA 143

Query: 110 LGSLQDLESLNLNG---CQKISDKGIEIISSTCPELKV-----FSIYW----NVRVTDIG 157
           L  L+  +++ ++G     K       +    C   KV     F I+W    N    +  
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 158 IQHLVKNCKHI-------------IDLNLSGCKNLLDKSLQ--------LIADNYQELES 196
           ++ L K    I             I L +   +  L + L+        L+  N Q  ++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 197 LN----------LTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLK 246
            N           TR  ++TD  L        SL   +       T +  +  SLL   K
Sbjct: 259 WNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHS----MTLTPD--EVKSLLL--K 309

Query: 247 FLDLCGAQNLSDEG-------LACI-AKCKNLVSLNLTW----CVRITDVGVMAIAEGCS 294
           +LD C  Q+L  E        L+ I    ++ ++    W    C ++T +    I    S
Sbjct: 310 YLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI----IE---S 361

Query: 295 SLEFLSSGAEM 305
           SL  L   AE 
Sbjct: 362 SLNVLEP-AEY 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 9e-08
 Identities = 48/342 (14%), Positives = 95/342 (27%), Gaps = 106/342 (30%)

Query: 17  WSKETVP------KVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYP------------SL 58
            + +         K++  ++TR   + +   L  +   H +L  +               
Sbjct: 254 QNAKAWNAFNLSCKIL--LTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 59  WLVI---DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIE-DRHLELLKTKCLGSLQ 114
           +L     DL       N    ++ I           +  + +  D+   ++++    SL 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIES----SLN 364

Query: 115 DLESLNLNGCQK---ISDKGIEIISSTCPELKVFSIYWN---VRVTDIGIQHLV------ 162
            LE            +      I     P   + S+ W         + +  L       
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHI-----PT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 163 KNCK------HIIDLNLSGCKNLLDKSL--QLI------------------ADNY----- 191
           K  K        I L L   K   + +L   ++                   D Y     
Sbjct: 419 KQPKESTISIPSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 192 -------QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD-EAYKK-IS-- 240
                  +  E + L R V L    L++ +   S+  + +   L+     + YK  I   
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 241 -------LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNL 275
                  + A L FL       +        +K  +L+ + L
Sbjct: 538 DPKYERLVNAILDFLPKIEENLI-------CSKYTDLLRIAL 572

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 22/136 (16%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 180 LDKSLQLIADNYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGFTDEAY 236
           ++++L+ I +N  +LE +NL   + +    L+     L   + ++  ++   +   D   
Sbjct: 24  VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVA 82

Query: 237 KKIS-LLAH---LKFLDLCGAQNLSDEGLACIAKC----KNLVSLNLTW-CVRITDVGVM 287
             ++ +L     LK L++     +S  G+  + +      +L+ L +      + +   M
Sbjct: 83  FALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141

Query: 288 AIAEG---CSSLEFLS 300
            IA      ++L    
Sbjct: 142 EIANMLEKNTTLLKFG 157

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 15/125 (12%)

Query: 115 DLESLNLNGCQKISDKGIEIISSTCPE---LKVFSIYWNVRVTDIGIQHL---VKNCKHI 168
           DLE +NLN    I    ++  +        +K FSI    R  D     L   +K    +
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTL 95

Query: 169 IDLNLSGCKNLLDKSLQLIADNYQE---LESLNLT-RCVKLTDGGLQKI---LIKCSSLR 221
             LN+     +    +  + +  Q    L  L +  +   L +    +I   L K ++L 
Sbjct: 96  KSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL 154

Query: 222 SLNLY 226
               +
Sbjct: 155 KFGYH 159

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 50/237 (21%), Positives = 82/237 (34%), Gaps = 52/237 (21%)

Query: 64  LREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG 123
           + E       +        +    + NL        +   +        L  ++ +  N 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNL--------KKKSVTDAVTQNELNSIDQIIANN 52

Query: 124 CQKISDKGIEIISSTCPELKVFSIYWNVRVTDI-GIQHLVK------NCKHIIDL-NLSG 175
              I    ++ I    P +    +  N ++TDI  + +L        +   I DL +L  
Sbjct: 53  SD-IKS--VQGIQY-LPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKD 107

Query: 176 CKNLLDKSLQL----IAD-----NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLY 226
            K L  KSL L    I+D     +  +LESL L    K+TD     +L + + L +L+L 
Sbjct: 108 LKKL--KSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLE 161

Query: 227 A-----LSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278
                 +             L  L+ L L     +SD  L  +A  KNL  L L   
Sbjct: 162 DNQISDIVPLAG--------LTKLQNLYLSKNH-ISD--LRALAGLKNLDVLELFSQ 207

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 24/259 (9%)

Query: 60  LVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 119
           L+ +  +          A  +        ++ + A++  +   ++LK K L SL+ +   
Sbjct: 56  LIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIG 115

Query: 120 NLNGCQKISDKGIEII---SSTCPELKVFSIYWNV----RVTDIGIQHLVKNCKHIIDLN 172
                 +      + I          +             ++ I    L      +  LN
Sbjct: 116 XWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175

Query: 173 LSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-KCSSLRSLNLYALS-- 229
               K   +  L +       L+SL +     L D  ++ IL     +L  L LY     
Sbjct: 176 NLKIKGTNN--LSIGKKPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 230 -GFTDEAYKKISLLA-----HLKFLDLCGAQNLSDEGLACIAKC---KNLVSLNLTWCVR 280
            GF  +      L +     +LK+L +  A+   +  +    +      L +++++    
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG-V 290

Query: 281 ITDVGVMAIAEGCSSLEFL 299
           +TD G   + +    ++ L
Sbjct: 291 LTDEGARLLLDHVDKIKHL 309

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 30/202 (14%), Positives = 56/202 (27%), Gaps = 31/202 (15%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII 169
           +  L  L+ +                +     +       +        +    N K + 
Sbjct: 444 IQRLTKLQIIYFANSP---------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 170 DLNLSGCKNL--LDKSLQLIADNYQELESLNLTR-------CVKLTDGGLQKILIKCSSL 220
           D+ L  C N+  L   L     +  EL+SLN+          +K     L         +
Sbjct: 495 DVELYNCPNMTQLPDFLY----DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 221 RSLNLY--ALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC 278
           +   +    L  F   A   +  +  L  LD    + +    L        L  L L + 
Sbjct: 551 QIFYMGYNNLEEFPASAS--LQKMVKLGLLDCVHNK-VRH--LEAFGTNVKLTDLKLDYN 605

Query: 279 VRITDVGVMAIAEGCSSLEFLS 300
            +I ++           +E L 
Sbjct: 606 -QIEEIPE-DFCAFTDQVEGLG 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 24/189 (12%)

Query: 103 ELLKTKCLGSLQDLESLNLNGCQ---KISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ 159
            +       S+  + S++ +  +   +  +    +           ++ +N  +      
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PT 690

Query: 160 HLVKNCKHIIDLNLSGCK------NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKI 213
            L      I  + LS         N L        + Y  L +++L    KLT       
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL-LTTIDLRFN-KLTSLSDDFR 748

Query: 214 LIKCSSLRSLNLY--ALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL-----ACIAK 266
                 L ++++     S F  +        + LK   +   ++     +       I  
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

Query: 267 CKNLVSLNL 275
           C +L+ L +
Sbjct: 805 CPSLIQLQI 813

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 210 LQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA----HLKFLDLCGAQNLSDEGLACIA 265
           + ++    + L+ +N+  +   + E  + +   A    H++   L     +SD     + 
Sbjct: 33  INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLI 91

Query: 266 KC----KNLVSLNLTWCVRITDVGVMAIAEG 292
           +      +L  LN+     +T   +  +   
Sbjct: 92  ELIETSPSLRVLNVESN-FLTPELLARLLRS 121

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 13/168 (7%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII 169
                 L+ L+L+    +    +        +L+      +  +  +    +  + +++I
Sbjct: 369 DFGTTSLKYLDLSFNG-VI--TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLI 424

Query: 170 DLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLY--A 227
            L++S        +   I +    LE L +       +  L  I  +  +L  L+L    
Sbjct: 425 YLDISH--THTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 228 LSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNL 275
           L   +  A    + L+ L+ L++    N             +L  L+ 
Sbjct: 482 LEQLSPTA---FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDY 525

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 15/150 (10%)

Query: 110 LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII 169
           +    +++ L +N     ++     IS     L+   I     VT   I +L      + 
Sbjct: 62  IEYAHNIKDLTINNIH-ATN--YNPISG-LSNLERLRIMGK-DVTSDKIPNL-SGLTSLT 115

Query: 170 DLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALS 229
            L++S      D  L  I     ++ S++L+    +TD      L     L+SLN+    
Sbjct: 116 LLDISHSA-HDDSILTKIN-TLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQF-D 169

Query: 230 GFTDEAYKKISLLAHLKFLDLCGAQNLSDE 259
           G  D  Y+ I     L  L     Q +  +
Sbjct: 170 GVHD--YRGIEDFPKLNQLYAFS-QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 17/149 (11%)

Query: 152 RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ 211
              +I    +      +  + L+         L  I +    ++ L +      T+    
Sbjct: 34  STANITEAQM----NSLTYITLANINV---TDLTGI-EYAHNIKDLTINNI-HATN---Y 81

Query: 212 KILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV 271
             +   S+L  L +      T +    +S L  L  LD+  +    D  L  I     + 
Sbjct: 82  NPISGLSNLERLRIMG-KDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVN 139

Query: 272 SLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           S++L++   ITD+  +        L+ L+
Sbjct: 140 SIDLSYNGAITDIMPLK---TLPELKSLN 165

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 24/190 (12%)

Query: 103 ELLKTKCLGSLQDLESLNLNGCQ--KISDKGIEIISST---CPELKVFSIYWNVRVTDIG 157
            +       S+  + +++ +  +   +  K  + +  T      +   ++  N +++   
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF- 448

Query: 158 IQHLVKNCKHIIDLNLSGCK-----NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQK 212
            + L      +  +NL G           K       N   L S++L    KLT      
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF 507

Query: 213 ILIKCSSLRSLNLY--ALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL-----ACIA 265
                  L  ++L   + S F  +        + LK   +   ++             I 
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQ----PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 266 KCKNLVSLNL 275
            C +L  L +
Sbjct: 564 LCPSLTQLQI 573

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 31/193 (16%), Positives = 57/193 (29%), Gaps = 37/193 (19%)

Query: 108 KCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQHL--- 161
                L  L+ + ++         +  +  T      L+  ++  N       ++ L   
Sbjct: 98  DQAFRLSHLQHMTIDAAG------LMELPDTMQQFAGLETLTLARN------PLRALPAS 145

Query: 162 VKNCKHIIDLNLSGCKNL-------LDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL 214
           + +   + +L++  C  L                     L+SL L     +    L   +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRS--LPASI 202

Query: 215 IKCSSLRSLNLY--ALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL-ACIAKCKNLV 271
               +L+SL +    LS         I  L  L+ LDL G   L              L 
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPA----IHHLPKLEELDLRGCTAL--RNYPPIFGGRAPLK 256

Query: 272 SLNLTWCVRITDV 284
            L L  C  +  +
Sbjct: 257 RLILKDCSNLLTL 269

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 37/239 (15%)

Query: 64  LREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG 123
                     +   ++      + ++ +           ++   + +  L +LE LNLNG
Sbjct: 24  GIRAVLQKASVTDVVTQEELESITKLVV--------AGEKVASIQGIEYLTNLEYLNLNG 75

Query: 124 CQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS 183
            Q I+D  I  +S+   +L    I  N ++TDI     ++N  ++ +L L+   + +   
Sbjct: 76  NQ-ITD--ISPLSN-LVKLTNLYIGTN-KITDISA---LQNLTNLRELYLNE--DNISDI 125

Query: 184 LQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA--LSGFTDEAYKKISL 241
             L   N  ++ SLNL     L+D      L   + L  L +    +   T      I+ 
Sbjct: 126 SPL--ANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKDVTP-----IAN 175

Query: 242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS 300
           L  L  L L     + D  ++ +A   +L         +ITD+  +      + L  L 
Sbjct: 176 LTDLYSLSL-NYNQIED--ISPLASLTSLHYFTAYVN-QITDITPV---ANMTRLNSLK 227

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 14/188 (7%)

Query: 116 LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLS 174
            +SLN  G Q +      + +ST   L + +        DI        C+  +  +NL 
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQ 262

Query: 175 GCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLY--ALSGFT 232
              +            +  L+ L+LT    L++  L   L+  S+L+ L L         
Sbjct: 263 K--HYFFNISSNTFHCFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSANKFENLC 317

Query: 233 DEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIA-E 291
             +    S    L  L + G     + G  C+   +NL  L+L+    I       +   
Sbjct: 318 QIS---ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLR 373

Query: 292 GCSSLEFL 299
             S L+ L
Sbjct: 374 NLSHLQSL 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.58
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.54
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.54
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.52
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.48
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.47
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.43
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.43
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.35
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.33
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.3
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.3
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.3
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.3
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.29
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.2
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.15
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.1
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.06
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.0
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.0
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.97
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.92
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.89
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.69
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.63
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.38
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.83
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.81
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.67
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.31
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	83.75

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=100.00  E-value=8.6e-32  Score=227.37  Aligned_cols=275  Identities=20%  Similarity=0.283  Sum_probs=196.8

Q ss_pred             hcccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccccchhhHHHHh-------------
Q 021374           12 EEEETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAAL-------------   78 (313)
Q Consensus        12 ~~~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------   78 (313)
                      .++..|. .+|+|++.+||+||+.+|+.+++.|||+|+.+. ..|..|+.+++.........+....             
T Consensus         4 ~~~~~~~-~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~-~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~   81 (336)
T 2ast_B            4 FPGVSWD-SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA-SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSF   81 (336)
T ss_dssp             ---CCSS-SSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH-TCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCE
T ss_pred             cccCChh-hCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-cCchhheeeccccccCCHHHHHhhhhccceEEEcCCcc
Confidence            3456784 455589999999999999999999999999985 5699999999987543322211110             


Q ss_pred             ------hccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcc
Q 021374           79 ------SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR  152 (313)
Q Consensus        79 ------~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  152 (313)
                            ....+++|+.|+++++. +++..+...    +..+++|++|+++++ .+++.....+ ..+++|++|++++|..
T Consensus        82 l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~----~~~~~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~L~~~~~  154 (336)
T 2ast_B           82 MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI----LSQCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSG  154 (336)
T ss_dssp             ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH----HTTBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEECTTCBS
T ss_pred             ccccchhhccCCCCCEEEccCCC-cCHHHHHHH----HhhCCCCCEEeCcCc-ccCHHHHHHH-hcCCCCCEEECCCCCC
Confidence                  01124667777777753 444434433    345588888888886 5565555555 4478888888888766


Q ss_pred             cCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCC-CCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCCCC
Q 021374          153 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSG  230 (313)
Q Consensus       153 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~  230 (313)
                      +++.++......+++|++|++++|..+++..+......++ +|++|++++|. .+++..+...+..+++|+.|+++++..
T Consensus       155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            7777777767778888888888875677666666666788 88888888864 566667777777888888888888655


Q ss_pred             CCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCcc
Q 021374          231 FTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE  297 (313)
Q Consensus       231 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  297 (313)
                      +++..+..+..+++|++|++++|..+++.++..+.++++|++|++++|  +++.++..+.+.+|+|+
T Consensus       235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~  299 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ  299 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred             CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE
Confidence            776667777778888888888887677766666777888888888877  77777777765566555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=4.2e-26  Score=206.84  Aligned_cols=270  Identities=20%  Similarity=0.243  Sum_probs=149.1

Q ss_pred             ccccCCchHHHHHHHcCCC-ccchhHHhhccHHHHHHHccCCCcceeecccccccchhhHHHHhhccccCCcCeeeccCC
Q 021374           16 TWSKETVPKVIRIMSTRLS-QRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   94 (313)
Q Consensus        16 ~~~~~~~peiL~~If~~L~-~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~   94 (313)
                      .|. .+|+|+|.+||+||+ .+|+.+++.|||+|+.+   ....|..+++.........    ....++++|+.++++++
T Consensus         5 ~~~-~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~---~~~~~~~l~~~~~~~~~~~----~~~~~~~~L~~L~L~~~   76 (594)
T 2p1m_B            5 IAL-SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI---ERWCRRKVFIGNCYAVSPA----TVIRRFPKVRSVELKGK   76 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH---HHHHCCEEEESSTTSSCHH----HHHHHCTTCCEEEEECS
T ss_pred             chh-hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh---hhhhceEEeeccccccCHH----HHHhhCCCceEEeccCC
Confidence            453 444479999999999 99999999999999987   2334555555443222111    11223455666665554


Q ss_pred             ccCchH-------------HHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           95 QDIEDR-------------HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        95 ~~~~~~-------------~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      ..+.+.             .+..+..    .+++|++|+++++ .+++..+..+...+++|++|++.+|..+++.++..+
T Consensus        77 ~~~~~~~l~~~~~~~~~~~~l~~l~~----~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  151 (594)
T 2p1m_B           77 PHFADFNLVPDGWGGYVYPWIEAMSS----SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI  151 (594)
T ss_dssp             CGGGGGTCSCTTSCCBCHHHHHHHHH----HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH
T ss_pred             CchhhcccccccccchhhHHHHHHHH----hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH
Confidence            322111             1122222    2355666666554 345555555544555666666655545555555555


Q ss_pred             HhcCCCCcEEeccCCc-----------------------------ccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHH
Q 021374          162 VKNCKHIIDLNLSGCK-----------------------------NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQK  212 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~-----------------------------~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~  212 (313)
                      ...+++|++|++++|.                             .+++..+..+...+++|++|++.+|..+  .++..
T Consensus       152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~  229 (594)
T 2p1m_B          152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLAT  229 (594)
T ss_dssp             HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHH
T ss_pred             HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHH
Confidence            5455555555555542                             2333444444444555555555554222  22444


Q ss_pred             HHhhCCCCCEEEeCCCCC-CC---------------------------HHHHHH-hhcCCCCCEEecCCCCCCChHHHHH
Q 021374          213 ILIKCSSLRSLNLYALSG-FT---------------------------DEAYKK-ISLLAHLKFLDLCGAQNLSDEGLAC  263 (313)
Q Consensus       213 ~~~~~~~L~~L~l~~~~~-~~---------------------------~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~  263 (313)
                      ++..+++|+.|.++.+.. +.                           ...+.. +..+++|++|++++|. +++.++..
T Consensus       230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~  308 (594)
T 2p1m_B          230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVK  308 (594)
T ss_dssp             HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHH
T ss_pred             HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHH
Confidence            445555555555433211 11                           111111 1145778888888884 77766555


Q ss_pred             -hhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374          264 -IAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA  303 (313)
Q Consensus       264 -l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  303 (313)
                       +.++++|++|++.+|  +++.++..+...+++|+.|++.+
T Consensus       309 ~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          309 LLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEec
Confidence             346888888888876  66777777777788888888844

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=4.8e-24  Score=193.29  Aligned_cols=31  Identities=29%  Similarity=0.238  Sum_probs=28.2

Q ss_pred             CchHHHHHHHcCC-CccchhHHhhccHHHHHH
Q 021374           21 TVPKVIRIMSTRL-SQRDIISLLLVSPWLHRT   51 (313)
Q Consensus        21 ~~peiL~~If~~L-~~~~l~~~~~v~~~w~~~   51 (313)
                      +|+|+|.+||+|| +.+|+.+++.|||+|+.+
T Consensus        16 LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           16 TVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            4447999999999 899999999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.3e-20  Score=157.26  Aligned_cols=189  Identities=22%  Similarity=0.332  Sum_probs=161.1

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .+++|++|+++++ .++...+......+++|++|+++++ .+++.....+. .+++|++|++++|..+++..+..+...+
T Consensus        91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           91 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            5689999999997 5677767777789999999999999 78877776664 5999999999998778887788877889


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCC-CCCEEEeCCCC-CCCHHHH-HHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCS-SLRSLNLYALS-GFTDEAY-KKISLLAHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      ++|++|++++|..+++.++...+..++ +|+.|+++++. .+++..+ ..+..+++|++|++++|..+++..+..+.+++
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            999999999976888877888889999 99999999975 5665444 45568999999999999668888888888999


Q ss_pred             CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      +|++|++++|..+++.++..+. .+++|+.|++++|
T Consensus       248 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~  282 (336)
T 2ast_B          248 YLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI  282 (336)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred             CCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc
Confidence            9999999999888888775554 6999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=8.6e-20  Score=165.36  Aligned_cols=214  Identities=25%  Similarity=0.412  Sum_probs=179.6

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecC----------Cc
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYW----------NV  151 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~  151 (313)
                      .+++|++|+++++. +++..+..+    +..+++|+.|++..  .+.+..+..+...+++|++|+++.          +.
T Consensus       291 ~~~~L~~L~Ls~~~-l~~~~~~~~----~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~  363 (592)
T 3ogk_B          291 FAAQIRKLDLLYAL-LETEDHCTL----IQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG  363 (592)
T ss_dssp             GGGGCCEEEETTCC-CCHHHHHHH----HTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred             hcCCCcEEecCCCc-CCHHHHHHH----HHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence            46789999999876 666666554    35669999999984  577788888888999999999994          66


Q ss_pred             ccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCC---CCCCCH----HHHHHHHhhCCCCCEEE
Q 021374          152 RVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---CVKLTD----GGLQKILIKCSSLRSLN  224 (313)
Q Consensus       152 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~~~~----~~~~~~~~~~~~L~~L~  224 (313)
                      .+++.++..+...+++|++|++. |..+++..+..+...+++|+.|++.+   |+.+++    .++..++.++++|+.|+
T Consensus       364 ~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          364 LVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             ccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            89999998888889999999994 46888988988888899999999973   456665    57888889999999999


Q ss_pred             eCCCC-CCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHh-hCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeec
Q 021374          225 LYALS-GFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACI-AKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSS  301 (313)
Q Consensus       225 l~~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l  301 (313)
                      +++|. .+++..+..++ .+++|++|++++| .+++.++..+ ..+++|++|++++| .+++.++..+...+++|+.|++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEE
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeEC
Confidence            98754 37888888776 5899999999998 6888776655 57999999999999 4899999999889999999999


Q ss_pred             CCcc
Q 021374          302 GAEM  305 (313)
Q Consensus       302 ~~~~  305 (313)
                      ++|.
T Consensus       521 s~n~  524 (592)
T 3ogk_B          521 QGYR  524 (592)
T ss_dssp             ESCB
T ss_pred             cCCc
Confidence            9886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.85  E-value=4.7e-20  Score=167.13  Aligned_cols=213  Identities=24%  Similarity=0.355  Sum_probs=165.5

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEe--------cCCccc
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSI--------YWNVRV  153 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~~  153 (313)
                      .+++|++|+++++. +++..+..+.    ..+++|+.|++.++  +++..+..+...+++|++|++        .++..+
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~----~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLL----CQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHH----TTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHH----hcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence            46788999998876 7666655553    45588999998875  566777777777889999988        334578


Q ss_pred             CHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecC-----CCCCCC----HHHHHHHHhhCCCCCEEE
Q 021374          154 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT-----RCVKLT----DGGLQKILIKCSSLRSLN  224 (313)
Q Consensus       154 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~L~~L~  224 (313)
                      ++.++..+...+++|++|.+.. ..+++..+..+...+++|+.|++.     +|+.++    +.++..++..+++|+.|+
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~  438 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS  438 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred             CHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence            8888888877788899886544 578888888887778889999888     566777    677777788888899888


Q ss_pred             eCCCCCCCHHHHHHhhc-CCCCCEEecCCCCCCChHHHHHh-hCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecC
Q 021374          225 LYALSGFTDEAYKKISL-LAHLKFLDLCGAQNLSDEGLACI-AKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSG  302 (313)
Q Consensus       225 l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~  302 (313)
                      +++  .+++..+..++. +++|++|++++| .+++.++..+ ..+++|++|++++| .+++.++..+...+++|+.|+++
T Consensus       439 L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~  514 (594)
T 2p1m_B          439 LSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMS  514 (594)
T ss_dssp             CCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEE
T ss_pred             ecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeee
Confidence            865  677777777775 888888888888 5777777666 45888888888888 56888887777778888888888


Q ss_pred             Cccc
Q 021374          303 AEMN  306 (313)
Q Consensus       303 ~~~~  306 (313)
                      +|..
T Consensus       515 ~~~~  518 (594)
T 2p1m_B          515 SCSV  518 (594)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            8753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=6.3e-17  Score=138.86  Aligned_cols=240  Identities=18%  Similarity=0.165  Sum_probs=168.2

Q ss_pred             ceeecccccccchhhHHHHh--hccccCCcCeeeccCCc--cCch---HHHHHHHHHhcCCCCCCcEEecCCCCCCChHH
Q 021374           59 WLVIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQ--DIED---RHLELLKTKCLGSLQDLESLNLNGCQKISDKG  131 (313)
Q Consensus        59 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~--~~~~---~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~  131 (313)
                      .+.+++.+...... ....+  .+..+++|+.|+++++.  .++.   ..+..+... +..+++|++|+++++ .++..+
T Consensus        34 L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~l~~~~  110 (386)
T 2ca6_A           34 VKEIVLSGNTIGTE-AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA-LLKCPKLHTVRLSDN-AFGPTA  110 (386)
T ss_dssp             CCEEECTTSEECHH-HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH-HTTCTTCCEEECCSC-CCCTTT
T ss_pred             ccEEECCCCCCCHH-HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH-HhhCCcccEEECCCC-cCCHHH
Confidence            47888877643322 12222  24468999999998862  2322   234344332 467899999999996 555532


Q ss_pred             ---HHHHHhcCCCCcEEEecCCcccCHHHHHHHHh---cC---------CCCcEEeccCCcccchHHHHH---HHHhCCC
Q 021374          132 ---IEIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NC---------KHIIDLNLSGCKNLLDKSLQL---IADNYQE  193 (313)
Q Consensus       132 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~---------~~L~~L~l~~~~~~~~~~l~~---l~~~~~~  193 (313)
                         +......+++|++|+|++| .++..+...+..   .+         ++|++|+++++ .+++..+..   ....+++
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~  188 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRL  188 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCC
Confidence               3334477899999999998 776555444332   33         89999999996 566555553   3346899


Q ss_pred             CcEEecCCCCCCCHHHHHHHH----hhCCCCCEEEeCCCCCCCHH----HHHHhhcCCCCCEEecCCCCCCChHHHHH--
Q 021374          194 LESLNLTRCVKLTDGGLQKIL----IKCSSLRSLNLYALSGFTDE----AYKKISLLAHLKFLDLCGAQNLSDEGLAC--  263 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--  263 (313)
                      |++|++++| .+.+.++..+.    ..+++|+.|+++++ .+++.    ....+..+++|++|++++| .+++.+...  
T Consensus       189 L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~  265 (386)
T 2ca6_A          189 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVV  265 (386)
T ss_dssp             CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHH
T ss_pred             cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHH
Confidence            999999995 78877755443    47899999999985 56643    3345668999999999999 688775443  


Q ss_pred             --hhC--CCCCceeeccCCCCCChHHHHHHH----HhCCCccEeecCCcccc
Q 021374          264 --IAK--CKNLVSLNLTWCVRITDVGVMAIA----EGCSSLEFLSSGAEMNC  307 (313)
Q Consensus       264 --l~~--~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~  307 (313)
                        +..  +++|++|++++| .+++.++..+.    ..+|+|+.|++++|.-.
T Consensus       266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence              323  899999999999 88886544433    45799999999998644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=6.9e-17  Score=138.61  Aligned_cols=217  Identities=20%  Similarity=0.271  Sum_probs=160.5

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCC--CCCh---HHHHHH---HhcCCCCcEEEecCCccc
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ--KISD---KGIEII---SSTCPELKVFSIYWNVRV  153 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~--~~~~---~~~~~~---~~~~~~L~~L~l~~~~~~  153 (313)
                      .+++|+.|+++++ .++......+... +..+++|+.|+++++.  .++.   ..+..+   ...+++|++|+|+++ .+
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l  106 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF  106 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred             cCCCccEEECCCC-CCCHHHHHHHHHH-HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence            5688999999986 5666655555433 4678999999999862  2222   233222   356899999999998 67


Q ss_pred             CHHH---HHHHHhcCCCCcEEeccCCcccchHHHHHHHH---hC---------CCCcEEecCCCCCCCHHHHH---HHHh
Q 021374          154 TDIG---IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NY---------QELESLNLTRCVKLTDGGLQ---KILI  215 (313)
Q Consensus       154 ~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~---------~~L~~L~l~~~~~~~~~~~~---~~~~  215 (313)
                      +..+   +......+++|++|++++| .+++.....+..   .+         ++|++|+++++ .+.+.++.   ..+.
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHH
Confidence            6643   3344567899999999997 566555444443   23         89999999994 67655555   4566


Q ss_pred             hCCCCCEEEeCCCCCCCHHHH----H-HhhcCCCCCEEecCCCCCCChHHH----HHhhCCCCCceeeccCCCCCChHHH
Q 021374          216 KCSSLRSLNLYALSGFTDEAY----K-KISLLAHLKFLDLCGAQNLSDEGL----ACIAKCKNLVSLNLTWCVRITDVGV  286 (313)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~----~-~l~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~  286 (313)
                      .+++|+.|+++++ .+.+.+.    . .+..+++|++|+|++| .+++.+.    ..+..+++|++|++++| .+++.+.
T Consensus       185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~  261 (386)
T 2ca6_A          185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGA  261 (386)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHH
T ss_pred             hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhH
Confidence            8899999999995 6776543    2 4568999999999999 6875443    34567899999999999 8998877


Q ss_pred             HHHHHh-----CCCccEeecCCccc
Q 021374          287 MAIAEG-----CSSLEFLSSGAEMN  306 (313)
Q Consensus       287 ~~l~~~-----~~~L~~L~l~~~~~  306 (313)
                      ..+...     +++|+.|++++|.-
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcC
Confidence            666543     78999999999853

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=1.8e-16  Score=139.19  Aligned_cols=215  Identities=20%  Similarity=0.261  Sum_probs=112.5

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHH---HHHHHhcCCCCcEEEecCCcccCHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG---IEIISSTCPELKVFSIYWNVRVTDIGIQ  159 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~  159 (313)
                      +++|+.|+++++. +++.....+........++|+.|+++++ .++..+   +......+++|++|+++++ .+++.++.
T Consensus       169 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~  245 (461)
T 1z7x_W          169 KPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMA  245 (461)
T ss_dssp             CTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHH
T ss_pred             CCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHH
Confidence            3555555555542 4444444443332223346666666665 333332   2222344566666666666 55555444


Q ss_pred             HHHh----cCCCCcEEeccCCcccchHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHHhh----CCCCCEEEeCCC
Q 021374          160 HLVK----NCKHIIDLNLSGCKNLLDKSLQLI---ADNYQELESLNLTRCVKLTDGGLQKILIK----CSSLRSLNLYAL  228 (313)
Q Consensus       160 ~~~~----~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~  228 (313)
                      .+..    .+++|++|++++| .+++.+...+   ...+++|++|+++++ .+.+.+...+...    .++|+.|+++++
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence            3332    3566666666665 4555442222   223566666666663 4554444333222    246666666664


Q ss_pred             CCCCHHH----HHHhhcCCCCCEEecCCCCCCChHHHHHhhC-----CCCCceeeccCCCCCChHHHHHHH---HhCCCc
Q 021374          229 SGFTDEA----YKKISLLAHLKFLDLCGAQNLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIA---EGCSSL  296 (313)
Q Consensus       229 ~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L  296 (313)
                       .+++..    ...+..+++|++|++++| .+++.+...+..     .++|++|++++| .+++.++..+.   ..+++|
T Consensus       324 -~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          324 -SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             -CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCC
T ss_pred             -CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCc
Confidence             344332    223345567777777776 566655544432     567777777776 66665443333   346777


Q ss_pred             cEeecCCcc
Q 021374          297 EFLSSGAEM  305 (313)
Q Consensus       297 ~~L~l~~~~  305 (313)
                      +.|++++|.
T Consensus       401 ~~L~l~~N~  409 (461)
T 1z7x_W          401 RELDLSNNC  409 (461)
T ss_dssp             CEEECCSSS
T ss_pred             cEEECCCCC
Confidence            777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=7.9e-17  Score=141.49  Aligned_cols=247  Identities=20%  Similarity=0.258  Sum_probs=172.6

Q ss_pred             HHHHHccCCCcceeecccccccchh---hHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCC
Q 021374           48 LHRTLVSYPSLWLVIDLREMNNAGN---RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC  124 (313)
Q Consensus        48 w~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~  124 (313)
                      |...+...+. .+.+++........   .+...  ...+++|++|+++++ .+++.....+........++|++|+++++
T Consensus        20 ~~~~~~~~~~-L~~L~L~~~~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n   95 (461)
T 1z7x_W           20 WAELLPLLQQ-CQVVRLDDCGLTEARCKDISSA--LRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC   95 (461)
T ss_dssp             HHHHHHHHTT-CSEEEEESSCCCHHHHHHHHHH--HHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             HHHHHhhcCC-ccEEEccCCCCCHHHHHHHHHH--HHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC
Confidence            4443333343 37788776653322   12222  235689999999986 46666666665543222227999999997


Q ss_pred             CCCChHH---HHHHHhcCCCCcEEEecCCcccCHHHHHHHHhc----CCCCcEEeccCCcccchHHH---HHHHHhCCCC
Q 021374          125 QKISDKG---IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSL---QLIADNYQEL  194 (313)
Q Consensus       125 ~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~l---~~l~~~~~~L  194 (313)
                       .+++.+   +......+++|++|+++++ .+++.++..+...    .++|++|++++| .+++...   ......+++|
T Consensus        96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L  172 (461)
T 1z7x_W           96 -CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDF  172 (461)
T ss_dssp             -CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTC
T ss_pred             -CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCC
Confidence             566543   3444467889999999998 6887777666543    457999999997 5665443   3334458999


Q ss_pred             cEEecCCCCCCCHHHHHHHHh----hCCCCCEEEeCCCCCCCHHH----HHHhhcCCCCCEEecCCCCCCChHHHHHhh-
Q 021374          195 ESLNLTRCVKLTDGGLQKILI----KCSSLRSLNLYALSGFTDEA----YKKISLLAHLKFLDLCGAQNLSDEGLACIA-  265 (313)
Q Consensus       195 ~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-  265 (313)
                      ++|+++++ .+.+.++..+..    ..++|+.|+++++ .+++..    ...+..+++|++|++++| .+++.++..+. 
T Consensus       173 ~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~  249 (461)
T 1z7x_W          173 KELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCP  249 (461)
T ss_dssp             CEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred             CEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHH
Confidence            99999995 577766655544    3569999999996 565543    444567899999999999 78877655543 


Q ss_pred             ----CCCCCceeeccCCCCCChHHHHHH---HHhCCCccEeecCCcc
Q 021374          266 ----KCKNLVSLNLTWCVRITDVGVMAI---AEGCSSLEFLSSGAEM  305 (313)
Q Consensus       266 ----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~  305 (313)
                          .+++|++|++++| .+++.++..+   ...+++|+.|++++|.
T Consensus       250 ~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence                4899999999999 8998875444   4468999999999885

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=9e-16  Score=130.47  Aligned_cols=244  Identities=23%  Similarity=0.230  Sum_probs=160.3

Q ss_pred             cCCCcceeecccccccchh---hHHHHhhccccC-CcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCCh
Q 021374           54 SYPSLWLVIDLREMNNAGN---RLVAALSIPRYR-HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD  129 (313)
Q Consensus        54 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~  129 (313)
                      ..+...+.+++++......   .+...+  ...+ +|++|+++++ .+++.....+........++|+.|+++++ .+++
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~   94 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAF--ANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSY   94 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHH--HTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGG
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHH--HhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cCCh
Confidence            4455568888887654322   122233  2456 8999999986 46554444444332222389999999997 4444


Q ss_pred             HHH---HHHHhcC-CCCcEEEecCCcccCHHHHHHHH---hc-CCCCcEEeccCCcccchHHHHHHH---HhCC-CCcEE
Q 021374          130 KGI---EIISSTC-PELKVFSIYWNVRVTDIGIQHLV---KN-CKHIIDLNLSGCKNLLDKSLQLIA---DNYQ-ELESL  197 (313)
Q Consensus       130 ~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~~~~~~l~~l~---~~~~-~L~~L  197 (313)
                      ...   ......+ ++|++|+++++ .+++.+...+.   .. +++|++|+++++ .+++.+...+.   ...+ +|++|
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEe
Confidence            333   3333445 79999999988 66665554443   33 469999999996 56654443332   3344 99999


Q ss_pred             ecCCCCCCCH---HHHHHHHhhC-CCCCEEEeCCCCCCCHHHHH----Hhhc-CCCCCEEecCCCCCCChHHHHHh----
Q 021374          198 NLTRCVKLTD---GGLQKILIKC-SSLRSLNLYALSGFTDEAYK----KISL-LAHLKFLDLCGAQNLSDEGLACI----  264 (313)
Q Consensus       198 ~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~l~~-~~~L~~L~l~~~~~~~~~~~~~l----  264 (313)
                      ++++| .+.+   ..+...+..+ ++|+.|+++++ .+.+.+..    .+.. .++|++|++++| .+++.+...+    
T Consensus       173 ~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~  249 (362)
T 3goz_A          173 NLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLK  249 (362)
T ss_dssp             ECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTT
T ss_pred             eecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHH
Confidence            99995 5544   3344455666 59999999985 56553333    3444 469999999999 6776544333    


Q ss_pred             hCCCCCceeeccCCC--CCChHHHHHHHHhC---CCccEeecCCccc
Q 021374          265 AKCKNLVSLNLTWCV--RITDVGVMAIAEGC---SSLEFLSSGAEMN  306 (313)
Q Consensus       265 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~---~~L~~L~l~~~~~  306 (313)
                      ..+++|++|++++|.  .+++.++..+...+   ++|+.|++++|.-
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            457899999999883  37888887777655   4677888988753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=4.3e-15  Score=126.24  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=15.9

Q ss_pred             CCCceeeccCCCCCChHHH---HHHHHhCCCccEeecCCc
Q 021374          268 KNLVSLNLTWCVRITDVGV---MAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       268 ~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~  304 (313)
                      ++|++|++++| .+++.+.   ..+...+++|+.|++++|
T Consensus       225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            35555555554 4444322   222233445555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.58  E-value=9e-14  Score=118.08  Aligned_cols=175  Identities=20%  Similarity=0.269  Sum_probs=92.7

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ++++.|+++++ .+++.....+.........+|+.|+|+++ .+++.++..+...+++|++|+|++| .+++.+...+..
T Consensus        72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred             hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence            55666666664 35554444444432223346666666664 4555555555555556666666666 666555444432


Q ss_pred             ----cCCCCcEEeccCCcccchHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCCCCH
Q 021374          164 ----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGFTD  233 (313)
Q Consensus       164 ----~~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~  233 (313)
                          ..++|++|++++| .+++.+...+.   ...++|++|++++ +.+.+.++..+   +...++|+.|+++++ .+++
T Consensus       149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~  225 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD  225 (372)
T ss_dssp             HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred             HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence                2355666666664 45554444332   2345666666666 34555443332   234455666666653 4555


Q ss_pred             HHHHHhh----cCCCCCEEecCCCCCCChHHHHHhh
Q 021374          234 EAYKKIS----LLAHLKFLDLCGAQNLSDEGLACIA  265 (313)
Q Consensus       234 ~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~  265 (313)
                      .+...+.    ..++|++|+|++| .+++.+...+.
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~  260 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLR  260 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHH
Confidence            4433332    3456666666666 45555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.58  E-value=4.7e-15  Score=110.53  Aligned_cols=104  Identities=17%  Similarity=0.280  Sum_probs=81.7

Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC----CCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL----AHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      +|++|++++|. +++.++..+ ..|++|++|++++|..+++.++..++.+    ++|++|+|++|..+||.++..+.+++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            57777777764 777666654 6778888888888877888888887764    57899999998889999888888899


Q ss_pred             CCceeeccCCCCCChHH--HHHHHHhCCCccE
Q 021374          269 NLVSLNLTWCVRITDVG--VMAIAEGCSSLEF  298 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~  298 (313)
                      +|++|++++|+.+++.+  ...+.+..|+++.
T Consensus       140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            99999999998898876  5566677887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=6.4e-17  Score=133.00  Aligned_cols=212  Identities=14%  Similarity=0.117  Sum_probs=143.5

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      .++++.|+++++. ++...     ...+..+++|+.|+++++ .++..... ....+++|++|+++++..+..... ...
T Consensus        31 ~~~l~~L~l~~n~-i~~~~-----~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~-~~~  101 (285)
T 1ozn_A           31 PAASQRIFLHGNR-ISHVP-----AASFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDP-ATF  101 (285)
T ss_dssp             CTTCSEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCT-TTT
T ss_pred             CCCceEEEeeCCc-CCccC-----HHHcccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCH-HHh
Confidence            4688999998753 33311     112456789999999886 44433222 225678999999998742443211 123


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|++|+++++ .++... ......+++|++|+++++ .+.... ...+..+++|+.|+++++ .++......+..+
T Consensus       102 ~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l  176 (285)
T 1ozn_A          102 HGLGRLHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGN-RISSVPERAFRGL  176 (285)
T ss_dssp             TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred             cCCcCCCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCC-cccccC-HhHhccCCCccEEECCCC-cccccCHHHhcCc
Confidence            46789999999986 343321 122234789999999984 444311 122467889999999984 5554434456778


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      ++|++|++++| .++......+.++++|++|++++| .++..... .+..+++|+.|++++|.--|.|+
T Consensus       177 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          177 HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCCccCCCC
Confidence            99999999998 566654556778899999999998 67664443 34478999999999998777775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.57  E-value=4.3e-14  Score=119.42  Aligned_cols=195  Identities=21%  Similarity=0.270  Sum_probs=90.5

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH--
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI--  158 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--  158 (313)
                      ..+++|+.|+++++........       +..+++|+.|+++++.......    ...+++|++|+++++ .+.+...  
T Consensus       129 ~~l~~L~~L~l~~n~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~  196 (347)
T 4fmz_A          129 ANLTKMYSLNLGANHNLSDLSP-------LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYN-QIEDISPLA  196 (347)
T ss_dssp             TTCTTCCEEECTTCTTCCCCGG-------GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTS-CCCCCGGGG
T ss_pred             ccCCceeEEECCCCCCcccccc-------hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCC-ccccccccc
Confidence            3567788888877643332111       2455667777776653222221    245666666666655 3322111  


Q ss_pred             ------------------HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374          159 ------------------QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL  220 (313)
Q Consensus       159 ------------------~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  220 (313)
                                        .. ...+++|++|+++++. +++...   ...+++|+.|+++++ .+..  +. .+..+++|
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~--~~-~~~~l~~L  267 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTN-QISD--IN-AVKDLTKL  267 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCC--CG-GGTTCTTC
T ss_pred             CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCC-ccCC--Ch-hHhcCCCc
Confidence                              00 2234445555554432 222111   223455555555543 2222  11 12344555


Q ss_pred             CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374          221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS  300 (313)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~  300 (313)
                      +.|+++++ .+.+.  ..+..+++|++|++++| .+++.....+.++++|++|++++| .+++...   ...+++|+.|+
T Consensus       268 ~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~  339 (347)
T 4fmz_A          268 KMLNVGSN-QISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP---LASLSKMDSAD  339 (347)
T ss_dssp             CEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG---GGGCTTCSEES
T ss_pred             CEEEccCC-ccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccC---hhhhhccceee
Confidence            55555553 22221  23445555555555555 444444444555555555555555 3333222   23455555555


Q ss_pred             cCCc
Q 021374          301 SGAE  304 (313)
Q Consensus       301 l~~~  304 (313)
                      +++|
T Consensus       340 l~~N  343 (347)
T 4fmz_A          340 FANQ  343 (347)
T ss_dssp             SSCC
T ss_pred             hhhh
Confidence            5554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.56  E-value=1.1e-13  Score=117.65  Aligned_cols=180  Identities=18%  Similarity=0.245  Sum_probs=141.6

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhc----CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374          114 QDLESLNLNGCQKISDKGIEIISST----CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD  189 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~  189 (313)
                      +.|+.|+++++ .++......+...    +++|++|+|++| .+++.++..+...+++|++|+++++ .+++.+...+..
T Consensus        72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred             hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence            78999999997 6777665555443    369999999999 8999988888877889999999997 788877776654


Q ss_pred             ----hCCCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCCCCHHHHHH----hhcCCCCCEEecCCCCCCCh
Q 021374          190 ----NYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGFTDEAYKK----ISLLAHLKFLDLCGAQNLSD  258 (313)
Q Consensus       190 ----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~  258 (313)
                          ..++|++|++++| .+++.+...+   +..+++|++|+++++ .+.+.+...    +...++|++|+|++| .+++
T Consensus       149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~  225 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD  225 (372)
T ss_dssp             HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred             HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence                3588999999995 7777665443   467899999999995 687766544    456789999999999 7888


Q ss_pred             HHHHHhh----CCCCCceeeccCCCCCChHHHHHHHHhCC-C---ccEee
Q 021374          259 EGLACIA----KCKNLVSLNLTWCVRITDVGVMAIAEGCS-S---LEFLS  300 (313)
Q Consensus       259 ~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~---L~~L~  300 (313)
                      .+...+.    .+++|++|+|++| .+++.++..+..... .   |+.+.
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~  274 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVV  274 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEEC
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhH
Confidence            7765554    5799999999999 899999988875321 2   66665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.55  E-value=7.4e-17  Score=140.79  Aligned_cols=212  Identities=19%  Similarity=0.181  Sum_probs=139.2

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++. +....     ...+..+++|+.|+|+++ .++.... .....+++|++|+++++ .+..... .
T Consensus        85 ~~l~~L~~L~Ls~n~-i~~i~-----~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~-~  154 (440)
T 3zyj_A           85 KHLRHLEILQLSRNH-IRTIE-----IGAFNGLANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNN-PIESIPS-Y  154 (440)
T ss_dssp             SSCSSCCEEECCSSC-CCEEC-----GGGGTTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSC-CCCEECT-T
T ss_pred             hCCCCCCEEECCCCc-CCccC-----hhhccCCccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCC-cccccCH-H
Confidence            456778888887753 32211     112456678888888875 3332211 12245678888888877 4442211 1


Q ss_pred             HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh
Q 021374          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS  240 (313)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  240 (313)
                      .+..+++|++|+++++..++..... ....+++|+.|+++++ .+..  +.. +..+++|+.|+++++ .+.......+.
T Consensus       155 ~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~  228 (440)
T 3zyj_A          155 AFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDLSGN-HLSAIRPGSFQ  228 (440)
T ss_dssp             TTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEECTTS-CCCEECTTTTT
T ss_pred             HhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCcc--ccc-cCCCcccCEEECCCC-ccCccChhhhc
Confidence            2245788888888876544332111 1234788999999885 4442  222 456788999999884 56555455677


Q ss_pred             cCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      .+++|++|++++| .++......+.++++|++|+|++| .++..... .+..+++|+.|++++|.--|.|.
T Consensus       229 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          229 GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSCEECSST
T ss_pred             cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCCccCCCC
Confidence            8899999999998 666655555778899999999998 66644332 33468999999999999888886

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.54  E-value=1.4e-15  Score=133.38  Aligned_cols=116  Identities=22%  Similarity=0.213  Sum_probs=74.9

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL  270 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  270 (313)
                      +++|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|
T Consensus       298 l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          298 FTDLEQLTLAQN-EINKID-DNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNL  373 (455)
T ss_dssp             CTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCC-cccccC-hhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccc
Confidence            455555555552 333211 112345667777777663 444444455667788888888888 5665544556778899


Q ss_pred             ceeeccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374          271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH  312 (313)
Q Consensus       271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  312 (313)
                      ++|++++| .++..... .+..+++|+.|++++|.-.|.|+.
T Consensus       374 ~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          374 KELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cEEECCCC-ccccCCHh-HhccCCcccEEEccCCCcccCCCc
Confidence            99999887 66543322 335788999999999988888864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.54  E-value=1.1e-16  Score=140.19  Aligned_cols=211  Identities=18%  Similarity=0.170  Sum_probs=131.6

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. +....     ...+..+++|+.|+|+++ .++.... .....+++|++|+++++ .+.... ...
T Consensus        97 ~l~~L~~L~Ls~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~  166 (452)
T 3zyi_A           97 HLHHLEVLQLGRNS-IRQIE-----VGAFNGLASLNTLELFDN-WLTVIPS-GAFEYLSKLRELWLRNN-PIESIP-SYA  166 (452)
T ss_dssp             TCTTCCEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCSBCCT-TTSSSCTTCCEEECCSC-CCCEEC-TTT
T ss_pred             CCCCCCEEECCCCc-cCCcC-----hhhccCcccCCEEECCCC-cCCccCh-hhhcccCCCCEEECCCC-CcceeC-HhH
Confidence            45666777766642 22211     111345577777777764 3332211 11245677777777766 443211 112


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      +..+++|++|+++++..++...... ...+++|+.|+++++ .+..  +.. +..+++|+.|+++++ .+.......+..
T Consensus       167 ~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  240 (452)
T 3zyi_A          167 FNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC-NIKD--MPN-LTPLVGLEELEMSGN-HFPEIRPGSFHG  240 (452)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS-CCSS--CCC-CTTCTTCCEEECTTS-CCSEECGGGGTT
T ss_pred             HhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC-cccc--ccc-ccccccccEEECcCC-cCcccCcccccC
Confidence            2456778888877754443321111 234678888888874 4443  111 356788889998884 565555566778


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      +++|++|++++| .++......+.++++|++|++++| .++.... ..+..+++|+.|++++|.--|.|+
T Consensus       241 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          241 LSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSCEECSTT
T ss_pred             ccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCCcCCCCC
Confidence            899999999998 666554455778899999999998 6654332 233468899999999999888886

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.54  E-value=1.2e-13  Score=116.74  Aligned_cols=198  Identities=24%  Similarity=0.278  Sum_probs=127.0

Q ss_pred             ccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHH
Q 021374           80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ  159 (313)
Q Consensus        80 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  159 (313)
                      +..+++|+.|+++++. +.+...       +..+++|+.|+++++........   ...+++|++|+++++ .+..... 
T Consensus       106 ~~~l~~L~~L~l~~n~-i~~~~~-------~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~-~~~~~~~-  172 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDN-ISDISP-------LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTES-KVKDVTP-  172 (347)
T ss_dssp             GTTCTTCSEEECTTSC-CCCCGG-------GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred             HcCCCcCCEEECcCCc-ccCchh-------hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCC-CcCCchh-
Confidence            4467899999999864 332211       35679999999999754443221   367899999999988 4443221 


Q ss_pred             HHHhcCCCCcEEeccCCcccchHHH-HH------------------HHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374          160 HLVKNCKHIIDLNLSGCKNLLDKSL-QL------------------IADNYQELESLNLTRCVKLTDGGLQKILIKCSSL  220 (313)
Q Consensus       160 ~~~~~~~~L~~L~l~~~~~~~~~~l-~~------------------l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  220 (313)
                        ...+++|++|+++++. +.+... ..                  ....+++|+.|++++| .+...  .. +..+++|
T Consensus       173 --~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~--~~-~~~l~~L  245 (347)
T 4fmz_A          173 --IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDL--SP-LANLSQL  245 (347)
T ss_dssp             --GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCC--GG-GTTCTTC
T ss_pred             --hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCC--cc-hhcCCCC
Confidence              4568899999998863 332111 00                  0123455556666553 33321  11 4556677


Q ss_pred             CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEee
Q 021374          221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLS  300 (313)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~  300 (313)
                      +.|+++++ .+..  +..+..+++|++|++++| .+++.  ..+..+++|++|++++| .+++.....+. .+++|+.|+
T Consensus       246 ~~L~l~~n-~l~~--~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~  317 (347)
T 4fmz_A          246 TWLEIGTN-QISD--INAVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLF  317 (347)
T ss_dssp             CEEECCSS-CCCC--CGGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEE
T ss_pred             CEEECCCC-ccCC--ChhHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEE
Confidence            77777664 3332  234567778888888887 45443  34667888899999888 77766655554 688999999


Q ss_pred             cCCcc
Q 021374          301 SGAEM  305 (313)
Q Consensus       301 l~~~~  305 (313)
                      +++|.
T Consensus       318 L~~n~  322 (347)
T 4fmz_A          318 LSQNH  322 (347)
T ss_dssp             CCSSS
T ss_pred             ccCCc
Confidence            98875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.52  E-value=4e-17  Score=135.61  Aligned_cols=214  Identities=14%  Similarity=0.134  Sum_probs=137.0

Q ss_pred             cccCCcCeeeccCCccCchHH--HHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI  158 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  158 (313)
                      ..+++|+.|+++++. ++...  ...+     ..+++|+.|+++++ .+....  .....+++|++|+++++ .+.....
T Consensus        49 ~~l~~L~~L~L~~n~-l~~~~~~~~~~-----~~~~~L~~L~Ls~n-~i~~l~--~~~~~l~~L~~L~l~~n-~l~~~~~  118 (306)
T 2z66_A           49 DKLTQLTKLSLSSNG-LSFKGCCSQSD-----FGTTSLKYLDLSFN-GVITMS--SNFLGLEQLEHLDFQHS-NLKQMSE  118 (306)
T ss_dssp             TTCTTCSEEECCSSC-CCEEEEEEHHH-----HSCSCCCEEECCSC-SEEEEE--EEEETCTTCCEEECTTS-EEESSTT
T ss_pred             hccccCCEEECCCCc-cCcccCccccc-----ccccccCEEECCCC-ccccCh--hhcCCCCCCCEEECCCC-ccccccc
Confidence            356788888888753 32110  0111     14578888888875 322211  11245788888888877 4433221


Q ss_pred             HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHH
Q 021374          159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK  238 (313)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  238 (313)
                      ......+++|++|+++++. ++... ......+++|+.|+++++ .+....+...+..+++|+.|+++++ .+.......
T Consensus       119 ~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~  194 (306)
T 2z66_A          119 FSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA  194 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred             chhhhhccCCCEEECCCCc-CCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHH
Confidence            1223467889999998863 33221 112234789999999884 4432112233567789999999984 555544556


Q ss_pred             hhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC-CCccEeecCCcccccccc
Q 021374          239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC-SSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~  311 (313)
                      +..+++|++|++++| .++......+..+++|++|++++| .++......+. .+ ++|+.|++++|.-.|.|+
T Consensus       195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTCCEECSGG
T ss_pred             hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCCCeecccC
Confidence            778899999999998 555443334677899999999998 66655443333 35 489999999998777775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.52  E-value=4.8e-16  Score=131.75  Aligned_cols=216  Identities=17%  Similarity=0.176  Sum_probs=114.1

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++. ++...     ...+..+++|++|+++++ .++.... .....+++|++|+++++ .+.......
T Consensus        73 ~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~  143 (353)
T 2z80_A           73 QRCVNLQALVLTSNG-INTIE-----EDSFSSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGETS  143 (353)
T ss_dssp             TTCTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSSC
T ss_pred             ccCCCCCEEECCCCc-cCccC-----HhhcCCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCchh
Confidence            345677777777652 32211     111345567777777765 3332222 22255677777777766 333211001


Q ss_pred             HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhh
Q 021374          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKIS  240 (313)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  240 (313)
                      ....+++|++|+++++..++......+ ..+++|+.|+++++ .+... ....+..+++|+.|+++++ .+.......+.
T Consensus       144 ~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~  219 (353)
T 2z80_A          144 LFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSY-EPKSLKSIQNVSHLILHMK-QHILLLEIFVD  219 (353)
T ss_dssp             SCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEEEEEECS-CSTTHHHHHHH
T ss_pred             hhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCcc-CHHHHhccccCCeecCCCC-ccccchhhhhh
Confidence            223466777777766432222111111 23566666666653 33221 0112344556666666553 23333222333


Q ss_pred             cCCCCCEEecCCCC--------------------------CCChHH----HHHhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374          241 LLAHLKFLDLCGAQ--------------------------NLSDEG----LACIAKCKNLVSLNLTWCVRITDVGVMAIA  290 (313)
Q Consensus       241 ~~~~L~~L~l~~~~--------------------------~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  290 (313)
                      .+++|++|++++|.                          .+++..    ...+.++++|++|++++| .++... ..++
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~-~~~~  297 (353)
T 2z80_A          220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP-DGIF  297 (353)
T ss_dssp             HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred             hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccC-HHHH
Confidence            45566666665552                          233322    234567899999999998 666322 2234


Q ss_pred             HhCCCccEeecCCcccccccc
Q 021374          291 EGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       291 ~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      ..+++|+.|++++|.--|.|+
T Consensus       298 ~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          298 DRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             hcCCCCCEEEeeCCCccCcCC
Confidence            578999999999998877775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.50  E-value=2e-15  Score=132.30  Aligned_cols=87  Identities=20%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS  294 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  294 (313)
                      ..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++......+ ..++
T Consensus       296 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~  371 (455)
T 3v47_A          296 SHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSF-LGLP  371 (455)
T ss_dssp             TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTT-TTCT
T ss_pred             ccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhc-cccc
Confidence            44556666666553 344333334556667777777766 454443344566777777777776 5554433222 2467


Q ss_pred             CccEeecCCcc
Q 021374          295 SLEFLSSGAEM  305 (313)
Q Consensus       295 ~L~~L~l~~~~  305 (313)
                      +|+.|++++|.
T Consensus       372 ~L~~L~L~~N~  382 (455)
T 3v47_A          372 NLKELALDTNQ  382 (455)
T ss_dssp             TCCEEECCSSC
T ss_pred             cccEEECCCCc
Confidence            77777777663

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.48  E-value=5.3e-15  Score=120.65  Aligned_cols=176  Identities=17%  Similarity=0.146  Sum_probs=85.2

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      +++++.|++.++. +....  .     +..+++|+.|+++++. +...  . ....+++|++|+++++ .++... ....
T Consensus        40 l~~L~~L~l~~~~-i~~~~--~-----l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~-~~~~  105 (272)
T 3rfs_A           40 LNSIDQIIANNSD-IKSVQ--G-----IQYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLILTGN-QLQSLP-NGVF  105 (272)
T ss_dssp             HTTCCEEECTTSC-CCCCT--T-----GGGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECTTS-CCCCCC-TTTT
T ss_pred             ccceeeeeeCCCC-ccccc--c-----cccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEECCCC-ccCccC-hhHh
Confidence            4666777766543 22110  0     2345667777776652 2221  1 1245666777777665 333211 1112


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|++|+++++ .++.... .....+++|+.|+++++ .+.... ...+..+++|+.|+++++ .++......+..+
T Consensus       106 ~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l  180 (272)
T 3rfs_A          106 DKLTNLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPEGVFDKL  180 (272)
T ss_dssp             TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             cCCcCCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCHHHhcCC
Confidence            34566666666664 2322111 11123566666666663 333210 112345566666666663 3333222334455


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      ++|++|++++| .++......+.++++|++|++++|
T Consensus       181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          181 TQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence            66666666666 344332233455666666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.48  E-value=1.1e-15  Score=138.72  Aligned_cols=165  Identities=22%  Similarity=0.255  Sum_probs=100.5

Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHH--HHHh
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ--KILI  215 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~~  215 (313)
                      .+++|++|+++++ .+...........+++|+.|+++++ .++.... .....+++|+.|+++++ .+.+..+.  ..+.
T Consensus       398 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~  473 (606)
T 3t6q_A          398 ECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQ  473 (606)
T ss_dssp             TCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTC-BCGGGEECSSCGGG
T ss_pred             CCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCC-CCCccccccchhhc
Confidence            3455555555554 2221111111234566777777665 2322111 11233677777777774 33321110  1245


Q ss_pred             hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCC
Q 021374          216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS  295 (313)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  295 (313)
                      .+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++| +|++++| .++...... +..+++
T Consensus       474 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~-~~~l~~  548 (606)
T 3t6q_A          474 TLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIILPSL-LPILSQ  548 (606)
T ss_dssp             GCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGG-HHHHHT
T ss_pred             cCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cccccCHhh-cccCCC
Confidence            6788888888874 455444455677888888888888 6776666667788888 8888888 665433222 235689


Q ss_pred             ccEeecCCcccccccc
Q 021374          296 LEFLSSGAEMNCCSCS  311 (313)
Q Consensus       296 L~~L~l~~~~~~~~~~  311 (313)
                      |+.|++++|.--|.|+
T Consensus       549 L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          549 QRTINLRQNPLDCTCS  564 (606)
T ss_dssp             SSEEECTTCCEECSGG
T ss_pred             CCEEeCCCCCccccCC
Confidence            9999999998888886

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.47  E-value=5.4e-15  Score=122.95  Aligned_cols=228  Identities=19%  Similarity=0.175  Sum_probs=139.1

Q ss_pred             ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhc-CCCCCCcEEecCCCCCCChH----HHH
Q 021374           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCL-GSLQDLESLNLNGCQKISDK----GIE  133 (313)
Q Consensus        59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~  133 (313)
                      ++.+.+...................++|++|+++++. +.......+    + ..+++|+.|+++++ .++..    ...
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~----~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~  139 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLP----LEATGLALSSLRLRNV-SWATGRSWLAEL  139 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCS----SSCCCBCCSSCEEESC-CCSSTTSSHHHH
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhh----hhccCCCCCEEEeecc-cccchhhhhHHH
Confidence            3444444443333333333333345678999998763 222111111    1 45688999999886 33321    111


Q ss_pred             HHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHH--HHhCCCCcEEecCCCCCCCH--HH
Q 021374          134 IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLI--ADNYQELESLNLTRCVKLTD--GG  209 (313)
Q Consensus       134 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~~~~--~~  209 (313)
                      .+ ..+++|++|+++++ .+..... .....+++|++|+++++...+...+...  ...+++|++|+++++ .++.  ..
T Consensus       140 ~~-~~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~  215 (310)
T 4glp_A          140 QQ-WLKPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGV  215 (310)
T ss_dssp             HT-TBCSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHH
T ss_pred             Hh-hhccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHH
Confidence            22 36889999999988 5433211 1224678999999999643333333211  135789999999995 5653  22


Q ss_pred             HHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC---CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHH
Q 021374          210 LQKILIKCSSLRSLNLYALSGFTDEAYKKISLL---AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGV  286 (313)
Q Consensus       210 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  286 (313)
                      ...++..+++|++|+++++ .+....+..+..+   ++|++|++++| .++.- ...+  +++|++|++++| .++....
T Consensus       216 ~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~~L~Ls~N-~l~~~~~  289 (310)
T 4glp_A          216 CAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLRVLDLSSN-RLNRAPQ  289 (310)
T ss_dssp             HHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCSCEECCSC-CCCSCCC
T ss_pred             HHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCCEEECCCC-cCCCCch
Confidence            2234578899999999984 4544322333433   79999999998 56521 1112  479999999998 6665322


Q ss_pred             HHHHHhCCCccEeecCCcc
Q 021374          287 MAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       287 ~~l~~~~~~L~~L~l~~~~  305 (313)
                         ...+++|+.|++++|.
T Consensus       290 ---~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          290 ---PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             ---TTSCCCCSCEECSSTT
T ss_pred             ---hhhCCCccEEECcCCC
Confidence               3568999999999885

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.46  E-value=1e-13  Score=115.04  Aligned_cols=189  Identities=17%  Similarity=0.197  Sum_probs=116.6

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      +++|+.|++.++. +....  .     +..+++|+.|+++++ .+.....   ...+++|++|+++++ .++..  .. .
T Consensus        40 l~~L~~L~l~~~~-i~~l~--~-----~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~  103 (308)
T 1h6u_A           40 LDGITTLSAFGTG-VTTIE--G-----VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNV--SA-I  103 (308)
T ss_dssp             HHTCCEEECTTSC-CCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCC--GG-G
T ss_pred             cCCcCEEEeeCCC-ccCch--h-----hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCc--hh-h
Confidence            4677777777653 32211  1     245677888888776 3333221   366778888888877 44432  12 3


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|++|+++++ .+++.  .. ...+++|+.|+++++ .+...  .. +..+++|+.|+++++ .+.+..  .+..+
T Consensus       104 ~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~--~l~~l  172 (308)
T 1h6u_A          104 AGLQSIKTLDLTST-QITDV--TP-LAGLSNLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNA-QVSDLT--PLANL  172 (308)
T ss_dssp             TTCTTCCEEECTTS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSS-CCCCCG--GGTTC
T ss_pred             cCCCCCCEEECCCC-CCCCc--hh-hcCCCCCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCC-cCCCCh--hhcCC
Confidence            45778888888875 34431  22 234778888888774 44431  11 467788888888774 444322  26677


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++|++++| .+++..  .+..+++|++|++++| .+++...   +..+++|+.|++++|.
T Consensus       173 ~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          173 SKLTTLKADDN-KISDIS--PLASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TTCCEEECCSS-CCCCCG--GGGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred             CCCCEEECCCC-ccCcCh--hhcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence            88888888887 454432  2667788888888877 5554431   3467888888887764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.44  E-value=2e-15  Score=126.44  Aligned_cols=61  Identities=23%  Similarity=0.187  Sum_probs=24.6

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      ..+++|+.|+++++ .+.. ....+..+++|++|++++|. +.......+.++++|++|++++|
T Consensus       203 ~~l~~L~~L~L~~N-~l~~-l~~~l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          203 ANLQNLKSLKIRNS-PLSA-LGPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             GGCTTCCEEEEESS-CCCC-CCGGGGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTC
T ss_pred             cCCCCCCEEEccCC-CCCc-CchhhccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCC
Confidence            44445555555442 2221 11123444455555555442 22111222334445555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.44  E-value=1e-15  Score=138.96  Aligned_cols=165  Identities=16%  Similarity=0.190  Sum_probs=104.8

Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC  217 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  217 (313)
                      .+++|+.|+++++ .+...........+++|++|+++++. ++.... .....+++|+.|+++++ .+.+..+...+..+
T Consensus       397 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l  472 (606)
T 3vq2_A          397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGN-SFKDNTLSNVFANT  472 (606)
T ss_dssp             TCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred             CCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCC-cCCCcchHHhhccC
Confidence            4456666666655 22221111122456777777777753 322111 11234678888888774 33321122334667


Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC-Cc
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS-SL  296 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L  296 (313)
                      ++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++.....  +..+| +|
T Consensus       473 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~--~~~l~~~L  547 (606)
T 3vq2_A          473 TNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGI--LQHFPKSL  547 (606)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESC--GGGSCTTC
T ss_pred             CCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHh--HhhhcccC
Confidence            88999999885 555544556778899999999998 666655556778899999999998 56633222  44566 69


Q ss_pred             cEeecCCcccccccc
Q 021374          297 EFLSSGAEMNCCSCS  311 (313)
Q Consensus       297 ~~L~l~~~~~~~~~~  311 (313)
                      +.|++++|.--|.|+
T Consensus       548 ~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          548 AFFNLTNNSVACICE  562 (606)
T ss_dssp             CEEECCSCCCCCSST
T ss_pred             cEEEccCCCcccCCc
Confidence            999999998878775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=4.1e-15  Score=121.16  Aligned_cols=179  Identities=20%  Similarity=0.208  Sum_probs=75.3

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ++++.|+++++. ++..     ....+..+++|++|+++++ .++... ..+...+++|++|+++++ .+..... ....
T Consensus        37 ~~l~~L~l~~n~-l~~~-----~~~~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~  106 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSL-----PSKAFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFD  106 (270)
T ss_dssp             TTCSEEECCSSC-CSCC-----CTTSSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTT
T ss_pred             CCCCEEECcCCC-CCee-----CHHHhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHcc
Confidence            456666666542 2211     1111345566666666654 222111 111234566666666655 3322111 1123


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      .+++|++|+++++ .++..... ....+++|++|+++++ .+.... ...+..+++|+.|+++++ .+.......+..++
T Consensus       107 ~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~  181 (270)
T 2o6q_A          107 QLVNLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLP-KGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLT  181 (270)
T ss_dssp             TCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred             cccCCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccC-HhHccCCcccceeEecCC-cCcEeChhHhccCC
Confidence            3556666666553 22221111 1123455555555553 232210 011234455555555542 22222222234445


Q ss_pred             CCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      +|++|++++| .++......+..+++|++|++++|
T Consensus       182 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          182 ELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence            5555555555 333222222334555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=3.7e-15  Score=131.47  Aligned_cols=114  Identities=23%  Similarity=0.227  Sum_probs=78.9

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      .+|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|+
T Consensus       224 ~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          224 LNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLR  299 (477)
T ss_dssp             CCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCC
T ss_pred             ccccEEECcCC-cccccC-HHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCC
Confidence            36666666663 343211 123577888999999874 455444445667889999999988 66655445577889999


Q ss_pred             eeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      +|++++| .++..... .+..+++|+.|++++|.--|.|.
T Consensus       300 ~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          300 VLNVSGN-QLTTLEES-VFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             EEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSCEECSGG
T ss_pred             EEECCCC-cCceeCHh-HcCCCcccCEEEccCCCccCccc
Confidence            9999988 66543322 23467899999999998777775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.43  E-value=1.8e-13  Score=102.00  Aligned_cols=95  Identities=15%  Similarity=0.286  Sum_probs=47.6

Q ss_pred             CCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC
Q 021374          141 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL  220 (313)
Q Consensus       141 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  220 (313)
                      .|+.|++++| .+++.++..+ ..|++|++|++++|..++|.++..+... +                      ..+++|
T Consensus        62 ~L~~LDLs~~-~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~----------------------~~~~~L  116 (176)
T 3e4g_A           62 KIQAIDATDS-CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL-E----------------------NLQKSM  116 (176)
T ss_dssp             CEEEEEEESC-CCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC-H----------------------HHHHHC
T ss_pred             eEeEEeCcCC-CccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc-c----------------------cccCCC
Confidence            4555555555 3555555444 2455555555555544555555444431 0                      012345


Q ss_pred             CEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHH
Q 021374          221 RSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEG  260 (313)
Q Consensus       221 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  260 (313)
                      ++|++++|..+++.++..++.+++|++|++++|+.+++.+
T Consensus       117 ~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             CEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred             CEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence            5555555555555555555555555555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.43  E-value=1.4e-15  Score=124.41  Aligned_cols=211  Identities=16%  Similarity=0.165  Sum_probs=134.1

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ++++.|+++++. ++....     ..+..+++|+.|+++++ .+...... ....+++|++|+++++ .++..... ...
T Consensus        28 ~~l~~L~ls~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~   97 (276)
T 2z62_A           28 FSTKNLDLSFNP-LRHLGS-----YSFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALG-AFS   97 (276)
T ss_dssp             TTCCEEECTTCC-CCEECT-----TTTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTT-TTT
T ss_pred             CCccEEECCCCc-ccccCH-----hHhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChh-hhc
Confidence            568899998763 332211     11456789999999886 44332211 2256789999999987 54433211 224


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH---HHHHHhh
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD---EAYKKIS  240 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~  240 (313)
                      .+++|++|+++++. ++...... ...+++|+.|+++++ .+....+...+..+++|+.|+++++ .+..   ..+..+.
T Consensus        98 ~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  173 (276)
T 2z62_A           98 GLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH  173 (276)
T ss_dssp             TCTTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred             CCccccEEECCCCC-ccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh
Confidence            67899999998863 33211111 234789999999984 4543223334677899999999884 4443   2344444


Q ss_pred             cCCCCC-EEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374          241 LLAHLK-FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH  312 (313)
Q Consensus       241 ~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  312 (313)
                      .++.|. +|++++| .++..... .....+|++|++++| .++.... ..+..+++|+.|++++|.-.|.|+.
T Consensus       174 ~L~~l~l~L~ls~n-~l~~~~~~-~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          174 QMPLLNLSLDLSLN-PMNFIQPG-AFKEIRLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             TCTTCCEEEECCSS-CCCEECTT-SSCSCCEEEEECCSS-CCSCCCT-TTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             hccccceeeecCCC-cccccCcc-ccCCCcccEEECCCC-ceeecCH-hHhcccccccEEEccCCcccccCCc
Confidence            555555 8999888 55543211 223458999999988 5664432 2345688999999999988888864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.43  E-value=2e-15  Score=136.12  Aligned_cols=191  Identities=21%  Similarity=0.214  Sum_probs=127.4

Q ss_pred             CCCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374          111 GSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD  189 (313)
Q Consensus       111 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~  189 (313)
                      ..+++|+.|+++++ .+.... .......+++|++|+++++ .+......  ...+++|++|+++++. +..........
T Consensus       344 ~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~  418 (570)
T 2z63_A          344 VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFL  418 (570)
T ss_dssp             CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTTT
T ss_pred             ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCC-cccccccc--ccccCCCCEEEccCCc-cccccchhhhh
Confidence            35678888888875 333211 1122356788888888877 33221111  3457889999998853 33221111224


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCC-HHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFT-DEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      .+++|+.|++++| .+... ....+..+++|+.|+++++. +. ......+..+++|++|++++| .++......+.+++
T Consensus       419 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~  494 (570)
T 2z63_A          419 SLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS  494 (570)
T ss_dssp             TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred             cCCCCCEEeCcCC-ccccc-chhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhhhccc
Confidence            5789999999885 33321 12235678999999999853 33 222345668899999999999 67665555678899


Q ss_pred             CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374          269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH  312 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  312 (313)
                      +|++|++++| .++..... .+..+++|+.|++++|.-.|.|+.
T Consensus       495 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 SLQVLNMASN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEeCCCC-cCCCCCHH-HhhcccCCcEEEecCCcccCCCcc
Confidence            9999999998 66654322 334789999999999998888875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.42  E-value=1.8e-14  Score=119.86  Aligned_cols=207  Identities=19%  Similarity=0.199  Sum_probs=134.7

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChH--HHHHHHh-cCCCCcEEEecCCcccCHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK--GIEIISS-TCPELKVFSIYWNVRVTDIGI  158 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~  158 (313)
                      .+++|++|+++++. +++.....+.   ...+++|++|+++++ .++..  .+..+.. ..++|++|+++++ .+.....
T Consensus        93 ~l~~L~~L~L~~n~-l~~~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLE-VTGTAPPPLL---EATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC  166 (312)
T ss_dssp             TTSCCCEEEEEEEB-CBSCCCCCSS---SCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT
T ss_pred             CcCCccEEEccCCc-ccchhHHHHH---HhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH
Confidence            57899999998864 3321111110   256789999999986 33332  2222211 1389999999988 5543321


Q ss_pred             HHHHhcCCCCcEEeccCCcccchHHHHHHH--HhCCCCcEEecCCCCCCCH--HHHHHHHhhCCCCCEEEeCCCCCCCHH
Q 021374          159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIA--DNYQELESLNLTRCVKLTD--GGLQKILIKCSSLRSLNLYALSGFTDE  234 (313)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~  234 (313)
                      . .+..+++|++|+++++...+...+..-.  ..+++|+.|+++++ .+..  .....++..+++|+.|+++++ .+...
T Consensus       167 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~  243 (312)
T 1wwl_A          167 E-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDA  243 (312)
T ss_dssp             T-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred             H-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence            2 2346889999999996433322222222  45799999999995 6663  223345568899999999984 45432


Q ss_pred             H-HHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          235 A-YKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       235 ~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      . ...+..+++|++|++++| .++. ....+.  ++|++|++++| .+++..  . +..+++|+.|++++|.
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N-~l~~~p--~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYN-RLDRNP--S-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSS-CCCSCC--C-TTTSCEEEEEECTTCT
T ss_pred             cchhhhhhcCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCC-CCCCCh--h-HhhCCCCCEEeccCCC
Confidence            2 123345789999999999 5652 111122  79999999998 776652  2 4578999999999885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.40  E-value=7.7e-16  Score=127.85  Aligned_cols=206  Identities=19%  Similarity=0.211  Sum_probs=138.7

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .++++.|+++++. ++.     +....+..+++|+.|+++++ .+...+ .......+++|++|+++++ .+..  +...
T Consensus        27 ~~~l~~L~L~~n~-l~~-----i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~--l~~~   96 (306)
T 2z66_A           27 PSSATRLELESNK-LQS-----LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT--MSSN   96 (306)
T ss_dssp             CTTCCEEECCSSC-CCC-----CCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEE--EEEE
T ss_pred             CCCCCEEECCCCc-cCc-----cCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-cccc--Chhh
Confidence            3689999999864 332     11122457799999999986 444221 0111245899999999988 4432  1111


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH-HHHHHhh
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD-EAYKKIS  240 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~  240 (313)
                      ...+++|++|+++++ .++..........+++|+.|+++++ .+... ....+..+++|+.|+++++ .+.+ .....+.
T Consensus        97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~  172 (306)
T 2z66_A           97 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFT  172 (306)
T ss_dssp             EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC-EEGGGEECSCCT
T ss_pred             cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC-ccccccchhHHh
Confidence            346899999999986 3443222112345899999999985 44321 1223567899999999985 3433 2234566


Q ss_pred             cCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          241 LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .+++|++|++++| .++......+.++++|++|++++| .++...... +..+++|+.|++++|.
T Consensus       173 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          173 ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSC
T ss_pred             hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCC
Confidence            8899999999999 676654556778999999999998 565433222 3468999999999885

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.39  E-value=1.3e-14  Score=122.98  Aligned_cols=208  Identities=16%  Similarity=0.095  Sum_probs=140.4

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      .++++.|+++++. ++...     ...+..+++|+.|+++++ .++..... ....+++|++|+++++ .++.... ...
T Consensus        51 ~~~L~~L~l~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~  120 (353)
T 2z80_A           51 TEAVKSLDLSNNR-ITYIS-----NSDLQRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYN-YLSNLSS-SWF  120 (353)
T ss_dssp             CTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSSCCH-HHH
T ss_pred             cccCcEEECCCCc-CcccC-----HHHhccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCC-cCCcCCH-hHh
Confidence            3689999999864 43211     112457799999999986 44433221 2256899999999988 5554322 224


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|++|+++++ .++..........+++|+.|+++++..+.... ...+..+++|+.|+++++ .+.......+..+
T Consensus       121 ~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l  197 (353)
T 2z80_A          121 KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDAS-DLQSYEPKSLKSI  197 (353)
T ss_dssp             TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred             CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCC-CcCccCHHHHhcc
Confidence            56899999999986 44431110123458999999999864444311 123467899999999984 4555445667789


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCCh---------------------------HH---HHHHHHh
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITD---------------------------VG---VMAIAEG  292 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------------------------~~---~~~l~~~  292 (313)
                      ++|++|++++| .++......+..+++|++|++++| .++.                           ..   +...+..
T Consensus       198 ~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~  275 (353)
T 2z80_A          198 QNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ  275 (353)
T ss_dssp             SEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred             ccCCeecCCCC-ccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence            99999999999 565544444556889999999887 4443                           11   2334457


Q ss_pred             CCCccEeecCCcc
Q 021374          293 CSSLEFLSSGAEM  305 (313)
Q Consensus       293 ~~~L~~L~l~~~~  305 (313)
                      +++|+.|++++|.
T Consensus       276 l~~L~~L~Ls~N~  288 (353)
T 2z80_A          276 ISGLLELEFSRNQ  288 (353)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             ccCCCEEECCCCC
Confidence            8999999999884

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=9e-15  Score=128.04  Aligned_cols=204  Identities=18%  Similarity=0.140  Sum_probs=141.8

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      .++++.|+++++. ++...     ...+..+++|+.|+++++ .+....... ...+++|++|+|+++ .++... ...+
T Consensus        74 ~~~l~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~  143 (452)
T 3zyi_A           74 PSNTRYLNLMENN-IQMIQ-----ADTFRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLTVIP-SGAF  143 (452)
T ss_dssp             CTTCSEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSBCC-TTTS
T ss_pred             CCCccEEECcCCc-CceEC-----HHHcCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCCccC-hhhh
Confidence            3689999999864 33211     112457799999999986 444332222 256899999999988 554321 1223


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|++|+++++ .++.... .....+++|+.|++++++.+..... ..+..+++|+.|+++++ .+...  ..+..+
T Consensus       144 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l  217 (452)
T 3zyi_A          144 EYLSKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC-NIKDM--PNLTPL  217 (452)
T ss_dssp             SSCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS-CCSSC--CCCTTC
T ss_pred             cccCCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC-ccccc--cccccc
Confidence            46899999999986 4443211 1223589999999998766543211 12467899999999985 44432  346678


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++|++++| .++......+.++++|++|++++| .++...... +..+++|+.|++++|.
T Consensus       218 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          218 VGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNN  277 (452)
T ss_dssp             TTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred             ccccEEECcCC-cCcccCcccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCc
Confidence            99999999999 676655566788999999999998 666544333 3468999999999884

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=3e-14  Score=131.07  Aligned_cols=168  Identities=23%  Similarity=0.199  Sum_probs=106.8

Q ss_pred             cCCCCcEEEecCCcccCH-HHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHH------
Q 021374          138 TCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGL------  210 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~------  210 (313)
                      .+++|+.|++.++ .+.. .........+++|+.|+++++ .++.... .....+++|+.|+++++ .+.....      
T Consensus       452 ~~~~L~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~  527 (680)
T 1ziw_A          452 LVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHN-NLARLWKHANPGG  527 (680)
T ss_dssp             TCTTCCEEECTTS-CCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCGGGGSTTSTTS
T ss_pred             cCcccccchhccc-cccccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCC-CccccchhhccCC
Confidence            3556666666554 2211 011112345678888888875 3433111 11234788888888884 4432100      


Q ss_pred             -HHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHH
Q 021374          211 -QKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAI  289 (313)
Q Consensus       211 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  289 (313)
                       ...+.++++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++......+
T Consensus       528 ~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~  604 (680)
T 1ziw_A          528 PIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVF  604 (680)
T ss_dssp             CCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHH
T ss_pred             cchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHh
Confidence             011466788999999874 444333334677889999999988 666443344567899999999998 7766554444


Q ss_pred             HHhCCCccEeecCCccccccccC
Q 021374          290 AEGCSSLEFLSSGAEMNCCSCSH  312 (313)
Q Consensus       290 ~~~~~~L~~L~l~~~~~~~~~~~  312 (313)
                      ...+++|+.|++++|.--|.|+.
T Consensus       605 ~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          605 GPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccccccCEEEccCCCcccCCcc
Confidence            44678999999999999999963

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=1.3e-12  Score=114.68  Aligned_cols=100  Identities=22%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL  270 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  270 (313)
                      +++|+.|+++++ .+.+  +.. +..+++|+.|+++++ .+.+..  .+..+++|++|++++| .+++.  ..+.++++|
T Consensus       286 l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L~~n-~l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L  355 (466)
T 1o6v_A          286 LTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFN-NISDIS--PVSSLTKLQRLFFYNN-KVSDV--SSLANLTNI  355 (466)
T ss_dssp             CTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSS-CCSCCG--GGGGCTTCCEEECCSS-CCCCC--GGGTTCTTC
T ss_pred             CCccCeEEcCCC-cccC--chh-hcCCCCCCEEECcCC-cCCCch--hhccCccCCEeECCCC-ccCCc--hhhccCCCC
Confidence            455555555553 2222  111 345555666666553 232221  1445666666666666 34332  235566677


Q ss_pred             ceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      ++|++++| .+++...   ...+++|+.|++++|
T Consensus       356 ~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          356 NWLSAGHN-QISDLTP---LANLTRITQLGLNDQ  385 (466)
T ss_dssp             CEEECCSS-CCCBCGG---GTTCTTCCEEECCCE
T ss_pred             CEEeCCCC-ccCccch---hhcCCCCCEEeccCC
Confidence            77777666 4444332   345667777777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.38  E-value=1.8e-14  Score=118.37  Aligned_cols=182  Identities=20%  Similarity=0.156  Sum_probs=127.5

Q ss_pred             CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCC
Q 021374          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (313)
Q Consensus       113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~  192 (313)
                      .++|+.|+++++ .++...... ...+++|++|+++++ .++..... .+..+++|++|+++++..++...... ...++
T Consensus        31 ~~~l~~L~l~~n-~i~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~  105 (285)
T 1ozn_A           31 PAASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT-FHGLG  105 (285)
T ss_dssp             CTTCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT-TTTCT
T ss_pred             CCCceEEEeeCC-cCCccCHHH-cccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHH-hcCCc
Confidence            378999999986 444432222 266899999999988 55543222 23468999999999964344322222 23479


Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS  272 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  272 (313)
                      +|++|+++++ .+... ....+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++
T Consensus       106 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  181 (285)
T 1ozn_A          106 RLHTLHLDRC-GLQEL-GPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDR  181 (285)
T ss_dssp             TCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCC-cCCEE-CHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCE
Confidence            9999999995 44431 1223567899999999984 454433445678899999999999 666544445778999999


Q ss_pred             eeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          273 LNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       273 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      |++++| .++......+ ..+++|+.|++++|.
T Consensus       182 L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          182 LLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN  212 (285)
T ss_dssp             EECCSS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred             EECCCC-cccccCHhHc-cCcccccEeeCCCCc
Confidence            999998 6765543333 368999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=1.9e-12  Score=113.73  Aligned_cols=168  Identities=23%  Similarity=0.269  Sum_probs=95.0

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .+++|+.|+++++.......    ...+++|+.|+++++ .+.+.  . ....+++|++|+++++. ++...  . ...+
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~--~-~~~l  264 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITP----LGILTNLDELSLNGN-QLKDI--G-TLASLTNLTDLDLANNQ-ISNLA--P-LSGL  264 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCCCG--G-GTTC
T ss_pred             cCCCCCEEEecCCccccccc----ccccCCCCEEECCCC-Ccccc--h-hhhcCCCCCEEECCCCc-cccch--h-hhcC
Confidence            44666666666542211111    244566666666665 33322  1 12356677777777653 32211  1 2346


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      ++|+.|+++++ .+...  .. +..+++|+.|+++++ .+.+.  ..+..+++|++|++++| .+++...  +..+++|+
T Consensus       265 ~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          265 TKLTELKLGAN-QISNI--SP-LAGLTALTNLELNEN-QLEDI--SPISNLKNLTYLTLYFN-NISDISP--VSSLTKLQ  334 (466)
T ss_dssp             TTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSS-CCSCC--GGGGGCTTCSEEECCSS-CCSCCGG--GGGCTTCC
T ss_pred             CCCCEEECCCC-ccCcc--cc-ccCCCccCeEEcCCC-cccCc--hhhcCCCCCCEEECcCC-cCCCchh--hccCccCC
Confidence            77777777764 33321  11 456677777777764 33321  22567778888888777 4544322  56678888


Q ss_pred             eeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +|++++| .+++.  . -...+++|+.|++++|.
T Consensus       335 ~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          335 RLFFYNN-KVSDV--S-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             EEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC
T ss_pred             EeECCCC-ccCCc--h-hhccCCCCCEEeCCCCc
Confidence            8888877 55543  1 23367788888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.38  E-value=3.2e-14  Score=119.39  Aligned_cols=177  Identities=16%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++. ++...     ...+..+++|++|+++++ .++....    ...++|++|+++++ .+..... .
T Consensus        73 ~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L~~L~l~~n-~l~~~~~-~  139 (330)
T 1xku_A           73 KNLKNLHTLILINNK-ISKIS-----PGAFAPLVKLERLYLSKN-QLKELPE----KMPKTLQELRVHEN-EITKVRK-S  139 (330)
T ss_dssp             TTCTTCCEEECCSSC-CCCBC-----TTTTTTCTTCCEEECCSS-CCSBCCS----SCCTTCCEEECCSS-CCCBBCH-H
T ss_pred             ccCCCCCEEECCCCc-CCeeC-----HHHhcCCCCCCEEECCCC-cCCccCh----hhcccccEEECCCC-cccccCH-h
Confidence            356777777777653 22211     111345567777777664 2221110    11256666666655 3332211 1


Q ss_pred             HHhcCCCCcEEeccCCcccchH-HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374          161 LVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI  239 (313)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  239 (313)
                      ....+++|+.|+++++. ++.. ........+++|+.|+++++ .+..  +..  ...++|+.|+++++ .+.......+
T Consensus       140 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--l~~--~~~~~L~~L~l~~n-~l~~~~~~~~  212 (330)
T 1xku_A          140 VFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT-NITT--IPQ--GLPPSLTELHLDGN-KITKVDAASL  212 (330)
T ss_dssp             HHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS-CCCS--CCS--SCCTTCSEEECTTS-CCCEECTGGG
T ss_pred             HhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC-cccc--CCc--cccccCCEEECCCC-cCCccCHHHh
Confidence            22345666666666542 2210 01111123555666655553 2221  000  01134555555442 2332222334


Q ss_pred             hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      ..+++|++|++++| .++......+..+++|++|++++|
T Consensus       213 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          213 KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC
Confidence            44455555555554 333322222344445555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.37  E-value=7.6e-15  Score=122.91  Aligned_cols=203  Identities=19%  Similarity=0.182  Sum_probs=133.3

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. +.. ..     ..+..+++|+.|+++++ .+..  +......+++|++|++++|...... ...+
T Consensus       102 ~l~~L~~L~L~~n~-l~~-lp-----~~~~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~-p~~~  170 (328)
T 4fcg_A          102 RLSHLQHMTIDAAG-LME-LP-----DTMQQFAGLETLTLARN-PLRA--LPASIASLNRLRELSIRACPELTEL-PEPL  170 (328)
T ss_dssp             GGTTCSEEEEESSC-CCC-CC-----SCGGGGTTCSEEEEESC-CCCC--CCGGGGGCTTCCEEEEEEETTCCCC-CSCS
T ss_pred             hCCCCCEEECCCCC-ccc-hh-----HHHhccCCCCEEECCCC-cccc--CcHHHhcCcCCCEEECCCCCCcccc-ChhH
Confidence            36788888888753 321 00     11345688999999886 3331  2222367889999999876332211 0011


Q ss_pred             --------HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH
Q 021374          162 --------VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD  233 (313)
Q Consensus       162 --------~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  233 (313)
                              ...+++|++|+++++ .++.  ++.....+++|+.|+++++ .+..  +...+..+++|+.|+++++... .
T Consensus       171 ~~~~~~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~-~  243 (328)
T 4fcg_A          171 ASTDASGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNS-PLSA--LGPAIHHLPKLEELDLRGCTAL-R  243 (328)
T ss_dssp             EEEC-CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESS-CCCC--CCGGGGGCTTCCEEECTTCTTC-C
T ss_pred             hhccchhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCC-CCCc--CchhhccCCCCCEEECcCCcch-h
Confidence                    123789999999886 4442  2222345899999999995 5543  3333678899999999986433 3


Q ss_pred             HHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          234 EAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       234 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .....+..+++|++|++++|... ......+.++++|++|++++|...+ ..... +..+++|+.+++..+.
T Consensus       244 ~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~-~iP~~-l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          244 NYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLS-RLPSL-IAQLPANCIILVPPHL  312 (328)
T ss_dssp             BCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCC-CCCGG-GGGSCTTCEEECCGGG
T ss_pred             hhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchh-hccHH-HhhccCceEEeCCHHH
Confidence            33445678999999999998443 3333457789999999999984433 32232 3468999999987653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.37  E-value=6.7e-13  Score=110.09  Aligned_cols=166  Identities=24%  Similarity=0.285  Sum_probs=123.9

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .+...  .. ...+++|++|+++++ .+.+...   ...+++|++|+++++. ++..  ..+ ..+++
T Consensus        41 ~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~--~~~-~~l~~  108 (308)
T 1h6u_A           41 DGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV--SAI-AGLQS  108 (308)
T ss_dssp             HTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC--GGG-TTCTT
T ss_pred             CCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc--hhh-cCCCC
Confidence            78999999987 33332  12 367899999999988 5554322   4678999999999964 5442  233 34899


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.+  +.. +..+++|+.|+++++ .+...  ..+..+++|++|++++| .+++..  .+.++++|++|
T Consensus       109 L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L  178 (308)
T 1h6u_A          109 IKTLDLTST-QITD--VTP-LAGLSNLQVLYLDLN-QITNI--SPLAGLTNLQYLSIGNA-QVSDLT--PLANLSKLTTL  178 (308)
T ss_dssp             CCEEECTTS-CCCC--CGG-GTTCTTCCEEECCSS-CCCCC--GGGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEE
T ss_pred             CCEEECCCC-CCCC--chh-hcCCCCCCEEECCCC-ccCcC--ccccCCCCccEEEccCC-cCCCCh--hhcCCCCCCEE
Confidence            999999995 5554  222 578899999999985 44432  22778999999999999 566532  27889999999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++++| .+++...   ...+++|+.|++++|.
T Consensus       179 ~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          179 KADDN-KISDISP---LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             ECCSS-CCCCCGG---GGGCTTCCEEECTTSC
T ss_pred             ECCCC-ccCcChh---hcCCCCCCEEEccCCc
Confidence            99998 6665432   4578999999999885

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.37  E-value=1.8e-14  Score=125.74  Aligned_cols=204  Identities=21%  Similarity=0.190  Sum_probs=141.4

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      .++++.|+++++. +.....     ..+..+++|+.|+|+++ .+...... ....+++|++|+|+++ .++... ...+
T Consensus        63 ~~~l~~L~L~~n~-i~~~~~-----~~~~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~-~~~~  132 (440)
T 3zyj_A           63 STNTRLLNLHENQ-IQIIKV-----NSFKHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-RLTTIP-NGAF  132 (440)
T ss_dssp             CTTCSEEECCSCC-CCEECT-----TTTSSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-CCSSCC-TTTS
T ss_pred             CCCCcEEEccCCc-CCeeCH-----HHhhCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-cCCeeC-HhHh
Confidence            3678999999864 332211     12467899999999986 44433222 2366899999999988 554321 1123


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|++|+++++ .++..... ....+++|+.|++++++.+.... ...+.++++|+.|+++++ .+..  +..+..+
T Consensus       133 ~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l  206 (440)
T 3zyj_A          133 VYLSKLKELWLRNN-PIESIPSY-AFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMC-NLRE--IPNLTPL  206 (440)
T ss_dssp             CSCSSCCEEECCSC-CCCEECTT-TTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTS-CCSS--CCCCTTC
T ss_pred             hccccCceeeCCCC-cccccCHH-HhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCC-cCcc--ccccCCC
Confidence            56799999999985 34432111 22358999999999865554311 113567899999999985 4432  2236678


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++|++++| .++......+.++++|++|++++| .++......+ ..+++|+.|+|++|.
T Consensus       207 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          207 IKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAF-DNLQSLVEINLAHNN  266 (440)
T ss_dssp             SSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSS-TTCTTCCEEECTTSC
T ss_pred             cccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhh-cCCCCCCEEECCCCC
Confidence            99999999999 676655556788999999999998 6765543333 368999999999884

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=2e-13  Score=105.72  Aligned_cols=149  Identities=21%  Similarity=0.233  Sum_probs=79.3

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      ++|+.|+++++ .+++.  .. ...+++|++|+++++ .+++.  ..+ ..+++|++|+++++ .+.+.... .+..+++
T Consensus        44 ~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~  113 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDL--TG-IEYAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGK-DVTSDKIP-NLSGLTS  113 (197)
T ss_dssp             HTCCEEEEESS-CCSCC--TT-GGGCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECT-TCBGGGSC-CCTTCTT
T ss_pred             CCccEEeccCC-CccCh--HH-HhcCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECC-ccCcccCh-hhcCCCC
Confidence            45555555554 33321  11 234556666666654 23221  112 23566666666663 34332111 1345666


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEe
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL  299 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L  299 (313)
                      |+.|+++++ .+.+..+..+..+++|++|++++|..+++.  ..+.++++|++|++++| .+++..   ....+++|+.|
T Consensus       114 L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L  186 (197)
T 4ezg_A          114 LTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQL  186 (197)
T ss_dssp             CCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEE
T ss_pred             CCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCC-CCcChH---HhccCCCCCEE
Confidence            777777663 455545556666777777777776424442  23566777777777776 555432   23356777777


Q ss_pred             ecCCcc
Q 021374          300 SSGAEM  305 (313)
Q Consensus       300 ~l~~~~  305 (313)
                      ++++|.
T Consensus       187 ~l~~N~  192 (197)
T 4ezg_A          187 YAFSQT  192 (197)
T ss_dssp             EECBC-
T ss_pred             EeeCcc
Confidence            777664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.36  E-value=6.1e-15  Score=133.91  Aligned_cols=86  Identities=16%  Similarity=0.231  Sum_probs=35.9

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHH---HHhhCCCCCceeeccCCCCCChHHHHHHHH
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGL---ACIAKCKNLVSLNLTWCVRITDVGVMAIAE  291 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  291 (313)
                      ..+++|+.|+++++ .+.......+..+++|++|++++| .+++..+   ..+..+++|++|++++| .++......+ .
T Consensus       422 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~  497 (606)
T 3t6q_A          422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF-T  497 (606)
T ss_dssp             TTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTT-T
T ss_pred             hCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhh-c
Confidence            34455555555542 222222233344555555555555 2322111   12334455555555554 3333222111 2


Q ss_pred             hCCCccEeecCCc
Q 021374          292 GCSSLEFLSSGAE  304 (313)
Q Consensus       292 ~~~~L~~L~l~~~  304 (313)
                      .+++|+.|++++|
T Consensus       498 ~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          498 SLKMMNHVDLSHN  510 (606)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cccCCCEEECCCC
Confidence            3455555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.35  E-value=2.3e-14  Score=126.36  Aligned_cols=207  Identities=18%  Similarity=0.175  Sum_probs=109.2

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++. ++..     ....+..+++|+.|+++++ .+..... .....+++|++|+++++ .+.......
T Consensus        77 ~~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~  147 (477)
T 2id5_A           77 NNLFNLRTLGLRSNR-LKLI-----PLGVFTGLSNLTKLDISEN-KIVILLD-YMFQDLYNLKSLEVGDN-DLVYISHRA  147 (477)
T ss_dssp             TTCTTCCEEECCSSC-CCSC-----CTTSSTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEEECCT-TCCEECTTS
T ss_pred             hCCccCCEEECCCCc-CCcc-----CcccccCCCCCCEEECCCC-ccccCCh-hHccccccCCEEECCCC-ccceeChhh
Confidence            356778888887653 2211     1111345577777777765 3222111 11245667777777665 333221111


Q ss_pred             HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC----------------------
Q 021374          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS----------------------  218 (313)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----------------------  218 (313)
                       +..+++|++|+++++ .++..... ....+++|+.|++.++ .+.... ...+..++                      
T Consensus       148 -~~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  222 (477)
T 2id5_A          148 -FSGLNSLEQLTLEKC-NLTSIPTE-ALSHLHGLIVLRLRHL-NINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCLY  222 (477)
T ss_dssp             -STTCTTCCEEEEESC-CCSSCCHH-HHTTCTTCCEEEEESC-CCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred             -ccCCCCCCEEECCCC-cCcccChh-HhcccCCCcEEeCCCC-cCcEeC-hhhcccCcccceeeCCCCccccccCccccc
Confidence             134566666666664 23322111 1223556666666552 222100 00112333                      


Q ss_pred             --CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374          219 --SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL  296 (313)
Q Consensus       219 --~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  296 (313)
                        +|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++| .++......+ ..+++|
T Consensus       223 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L  298 (477)
T 2id5_A          223 GLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAF-RGLNYL  298 (477)
T ss_dssp             TCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTB-TTCTTC
T ss_pred             CccccEEECcCC-cccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHh-cCcccC
Confidence              5555555553 344333445667788888888887 455443344567788888888877 5555433322 367888


Q ss_pred             cEeecCCcc
Q 021374          297 EFLSSGAEM  305 (313)
Q Consensus       297 ~~L~l~~~~  305 (313)
                      +.|++++|.
T Consensus       299 ~~L~L~~N~  307 (477)
T 2id5_A          299 RVLNVSGNQ  307 (477)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCc
Confidence            888888774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.35  E-value=1.5e-12  Score=107.03  Aligned_cols=145  Identities=28%  Similarity=0.289  Sum_probs=60.9

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .+++|+.|+++++ .++....   ...+++|+.|+++++ .++..  .. ...+++|++|+++++ .+++.  ..+ ..+
T Consensus        66 ~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~L~~n-~i~~~--~~l-~~l  133 (291)
T 1h6t_A           66 YLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDL--SS-LKDLKKLKSLSLEHN-GISDI--NGL-VHL  133 (291)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCG--GG-GTTCTTCCEEECTTS-CCCCC--GGG-GGC
T ss_pred             cCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCC--hh-hccCCCCCEEECCCC-cCCCC--hhh-cCC
Confidence            3455666666554 2222111   244555555555555 33321  11 234455555555553 22221  111 224


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      ++|+.|+++++ .+...   ..+..+++|+.|+++++ .+.+...  +..+++|++|++++| .+++.  ..+..+++|+
T Consensus       134 ~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N-~i~~l--~~l~~l~~L~  203 (291)
T 1h6t_A          134 PQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKN-HISDL--RALAGLKNLD  203 (291)
T ss_dssp             TTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCS
T ss_pred             CCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCC-cCCCC--hhhccCCCCC
Confidence            55555555552 33221   12334455555555442 2222111  444455555555554 33321  1234445555


Q ss_pred             eeeccCC
Q 021374          272 SLNLTWC  278 (313)
Q Consensus       272 ~L~l~~~  278 (313)
                      .|++++|
T Consensus       204 ~L~l~~n  210 (291)
T 1h6t_A          204 VLELFSQ  210 (291)
T ss_dssp             EEEEEEE
T ss_pred             EEECcCC
Confidence            5555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.34  E-value=5.6e-13  Score=118.76  Aligned_cols=164  Identities=19%  Similarity=0.194  Sum_probs=108.2

Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccch-HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRCVKLTDGGLQKILI  215 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~  215 (313)
                      ..+++|++|+++++ .+++..... ...+++|++|+++++ .++. ..++.....+++|+.|+++++ .+........+.
T Consensus       321 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~  396 (520)
T 2z7x_B          321 SKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCS  396 (520)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCC
T ss_pred             hhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhc
Confidence            45688888888887 555432222 246788899999886 4443 234444456888999999884 444310111234


Q ss_pred             hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCC
Q 021374          216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSS  295 (313)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  295 (313)
                      .+++|+.|+++++ .++...+..+.  ++|++|++++| .++. ....+..+++|++|++++| .++..... .+..+++
T Consensus       397 ~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~  469 (520)
T 2z7x_B          397 WTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTS  469 (520)
T ss_dssp             CCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred             cCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCc
Confidence            5688899999884 45443322222  68999999998 5652 2233557899999999998 66643222 3456889


Q ss_pred             ccEeecCCcccccccc
Q 021374          296 LEFLSSGAEMNCCSCS  311 (313)
Q Consensus       296 L~~L~l~~~~~~~~~~  311 (313)
                      |+.|++++|.-.|.|+
T Consensus       470 L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             ccEEECcCCCCcccCC
Confidence            9999999998888775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.34  E-value=2.1e-14  Score=130.45  Aligned_cols=184  Identities=16%  Similarity=0.159  Sum_probs=112.5

Q ss_pred             CCCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374          111 GSLQDLESLNLNGCQKISDKG-IEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD  189 (313)
Q Consensus       111 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~  189 (313)
                      ..+++|+.|+++++ .+.... .......+++|++|+++++ .+...  ......+++|++|+++++. +..........
T Consensus       347 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  421 (606)
T 3vq2_A          347 VALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIM--SANFMGLEELQHLDFQHST-LKRVTEFSAFL  421 (606)
T ss_dssp             CCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC-SEEEE--CCCCTTCTTCCEEECTTSE-EESTTTTTTTT
T ss_pred             ccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC-ccccc--hhhccCCCCCCeeECCCCc-cCCccChhhhh
Confidence            45567777777765 222211 1122356777777777776 33221  1222456778888887753 33221111223


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      .+++|+.|+++++ .+... ....+..+++|+.|+++++ .+.+. ....+..+++|++|++++| .++......+.+++
T Consensus       422 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          422 SLEKLLYLDISYT-NTKID-FDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLH  497 (606)
T ss_dssp             TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred             ccccCCEEECcCC-CCCcc-chhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccc
Confidence            4788888888875 33321 1223466788888888874 33331 2334567889999999988 66655445577889


Q ss_pred             CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +|++|++++| .++......+ ..+++|+.|++++|.
T Consensus       498 ~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          498 RLQLLNMSHN-NLLFLDSSHY-NQLYSLSTLDCSFNR  532 (606)
T ss_dssp             TCCEEECCSS-CCSCEEGGGT-TTCTTCCEEECTTSC
T ss_pred             cCCEEECCCC-cCCCcCHHHc-cCCCcCCEEECCCCc
Confidence            9999999988 6665433333 367889999998874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.34  E-value=3e-14  Score=132.68  Aligned_cols=158  Identities=20%  Similarity=0.298  Sum_probs=71.0

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH-
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH-  160 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-  160 (313)
                      .+++|+.|+++++. +......   ...++.+++|++|+++++. +.......+...+++|++|+++++ .++...... 
T Consensus        98 ~l~~L~~L~Ls~n~-l~~~~~~---~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~  171 (768)
T 3rgz_A           98 CSASLTSLDLSRNS-LSGPVTT---LTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGW  171 (768)
T ss_dssp             CCTTCCEEECCSSE-EEEEGGG---GGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHH
T ss_pred             cCCCCCEEECCCCc-CCCcCCC---hHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhh
Confidence            34566666666543 2211110   0012345666666666542 111111011134556666666655 333222111 


Q ss_pred             -HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374          161 -LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI  239 (313)
Q Consensus       161 -~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  239 (313)
                       ....+++|++|+++++. +.... . . ..+++|++|+++++ .+.. .+.. +..+++|++|+++++ .+.......+
T Consensus       172 ~~~~~l~~L~~L~Ls~n~-l~~~~-~-~-~~l~~L~~L~Ls~n-~l~~-~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l  243 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNK-ISGDV-D-V-SRCVNLEFLDVSSN-NFST-GIPF-LGDCSALQHLDISGN-KLSGDFSRAI  243 (768)
T ss_dssp             HHTTCCTTCCEEECCSSE-EESCC-B-C-TTCTTCCEEECCSS-CCCS-CCCB-CTTCCSCCEEECCSS-CCCSCHHHHT
T ss_pred             hhhccCCCCCEEECCCCc-ccccC-C-c-ccCCcCCEEECcCC-cCCC-CCcc-cccCCCCCEEECcCC-cCCCcccHHH
Confidence             13445666666666542 22100 0 0 23566666666653 2221 0111 345566666666653 3444444555


Q ss_pred             hcCCCCCEEecCCC
Q 021374          240 SLLAHLKFLDLCGA  253 (313)
Q Consensus       240 ~~~~~L~~L~l~~~  253 (313)
                      ..+++|++|++++|
T Consensus       244 ~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          244 STCTELKLLNISSN  257 (768)
T ss_dssp             TTCSSCCEEECCSS
T ss_pred             hcCCCCCEEECCCC
Confidence            55666666666655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.34  E-value=3.7e-15  Score=124.04  Aligned_cols=205  Identities=13%  Similarity=0.112  Sum_probs=93.7

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++..+.......     +..+++|++|+++++ .+..... .....+++|++|+++++ .+... +..
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~-----l~~l~~L~~L~Ls~n-~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~-~p~  143 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPA-----IAKLTQLHYLYITHT-NVSGAIP-DFLSQIKTLVTLDFSYN-ALSGT-LPP  143 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGG-----GGGCTTCSEEEEEEE-CCEEECC-GGGGGCTTCCEEECCSS-EEESC-CCG
T ss_pred             hCCCCCCeeeCCCCCcccccCChh-----HhcCCCCCEEECcCC-eeCCcCC-HHHhCCCCCCEEeCCCC-ccCCc-CCh
Confidence            356788888887422232211111     345677888888765 3321111 12255677788877776 33321 111


Q ss_pred             HHhcCCCCcEEeccCCcccchHHHHHHHHhCC-CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374          161 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI  239 (313)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  239 (313)
                      ....+++|++|+++++ .++......+. .++ +|+.|+++++ .+... ....+..++ |+.|+++++ .+.......+
T Consensus       144 ~~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~-~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~  217 (313)
T 1ogq_A          144 SISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGK-IPPTFANLN-LAFVDLSRN-MLEGDASVLF  217 (313)
T ss_dssp             GGGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEE-CCGGGGGCC-CSEEECCSS-EEEECCGGGC
T ss_pred             HHhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeecc-CChHHhCCc-ccEEECcCC-cccCcCCHHH
Confidence            2245677777777775 33321111122 244 6777777663 22210 111122333 555555552 2222222333


Q ss_pred             hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      ..+++|++|++++| .++... ..+..+++|++|++++| .+++..... +..+++|+.|++++|
T Consensus       218 ~~l~~L~~L~L~~N-~l~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          218 GSDKNTQKIHLAKN-SLAFDL-GKVGLSKNLNGLDLRNN-RIYGTLPQG-LTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CTTSCCSEEECCSS-EECCBG-GGCCCCTTCCEEECCSS-CCEECCCGG-GGGCTTCCEEECCSS
T ss_pred             hcCCCCCEEECCCC-ceeeec-CcccccCCCCEEECcCC-cccCcCChH-HhcCcCCCEEECcCC
Confidence            44555555555555 232211 11334455555555554 333221111 123455555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.33  E-value=3e-11  Score=101.80  Aligned_cols=219  Identities=16%  Similarity=0.167  Sum_probs=143.0

Q ss_pred             HHHHhhccccCCcCeeeccCCccCc-h---HHHHHHHHHhcCCCCCCcEEecCCCCC----C---ChHHHHHHHhcCCCC
Q 021374           74 LVAALSIPRYRHVREINLEFAQDIE-D---RHLELLKTKCLGSLQDLESLNLNGCQK----I---SDKGIEIISSTCPEL  142 (313)
Q Consensus        74 ~~~~~~~~~~~~l~~L~l~~~~~~~-~---~~~~~l~~~~~~~~~~L~~L~l~~~~~----~---~~~~~~~~~~~~~~L  142 (313)
                      +..++.......++.|.+.... +. .   ..+..+.. ....+++|+.|.+.....    +   ....+..+...+|+|
T Consensus        97 ~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~-s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L  174 (362)
T 2ra8_A           97 MDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVE-NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLL  174 (362)
T ss_dssp             HHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHT-THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTC
T ss_pred             HHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHH-hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCC
Confidence            3334444445667888877432 32 1   12333321 123558999998865311    0   011245666788999


Q ss_pred             cEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH-hCCCCcEEecCCCCC--CCH---HHHHHHH--
Q 021374          143 KVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD-NYQELESLNLTRCVK--LTD---GGLQKIL--  214 (313)
Q Consensus       143 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~--~~~---~~~~~~~--  214 (313)
                      +.|.+.++..+.   +..+  ..++|++|.+..| .++...+..+.. .+|+|++|+|+.+..  ..+   ..+..++  
T Consensus       175 ~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          175 NNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             CEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             cEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            999998763222   1111  3789999999986 578888877764 589999999853111  011   1122222  


Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhh---cCCCCCEEecCCCCCCChHHHHHhh----CCCCCceeeccCCCCCChHHHH
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKIS---LLAHLKFLDLCGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVGVM  287 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~  287 (313)
                      ..+|+|+.|++.+| .+.+.....+.   .+|+|++|+|+.| .+++.+...+.    ++++|+.|++++| .+++.++.
T Consensus       249 ~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~  325 (362)
T 2ra8_A          249 DRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKK  325 (362)
T ss_dssp             TTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHH
T ss_pred             CCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHH
Confidence            25799999999885 56555555554   5789999999988 79888766654    4699999999998 79999999


Q ss_pred             HHHHhCCCccEeecCCcc
Q 021374          288 AIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       288 ~l~~~~~~L~~L~l~~~~  305 (313)
                      .+.+.+  ..+++++.+.
T Consensus       326 ~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC--CSEEECCSBC
T ss_pred             HHHHHc--CCEEEecCCc
Confidence            988755  4557776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.33  E-value=9.5e-14  Score=113.19  Aligned_cols=183  Identities=20%  Similarity=0.221  Sum_probs=124.2

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|++.++.......    ...+++|++|+++++ .+...  . ....+++|++|+++++ .++.... .....+++
T Consensus        41 ~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~  110 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGN-KLHDI--S-ALKELTNLTYLILTGN-QLQSLPN-GVFDKLTN  110 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTS-CCCCC--G-GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred             cceeeeeeCCCCcccccc----cccCCCCcEEECCCC-CCCCc--h-hhcCCCCCCEEECCCC-ccCccCh-hHhcCCcC
Confidence            789999998863222222    256899999999988 55442  2 2356789999999986 4443211 12234789


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+... ....+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus       111 L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          111 LKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             CCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence            999999885 44431 1122467789999999885 454433344567889999999998 5665433446678999999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH  312 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  312 (313)
                      ++++| .++.... ..+..+++|+.|++++|...|.|++
T Consensus       187 ~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          187 RLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             ECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ECCCC-cCCccCH-HHHhCCcCCCEEEccCCCccccCcH
Confidence            99988 5654332 2334688999999999988787765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.30  E-value=2.1e-12  Score=116.31  Aligned_cols=167  Identities=25%  Similarity=0.272  Sum_probs=93.8

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. +....  .     +..+++|+.|+|+++. +.....   ...+++|+.|+|+++ .+...  .. 
T Consensus        41 ~L~~L~~L~l~~n~-i~~l~--~-----l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l--~~-  104 (605)
T 1m9s_A           41 ELNSIDQIIANNSD-IKSVQ--G-----IQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDEN-KIKDL--SS-  104 (605)
T ss_dssp             HHTTCCCCBCTTCC-CCCCT--T-----GGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCC--TT-
T ss_pred             cCCCCCEEECcCCC-CCCCh--H-----HccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCC-CCCCC--hh-
Confidence            35677777777653 22211  1     3456777777777753 322211   356777777777776 44331  11 


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      +..+++|+.|+++++ .+.+  +..+ ..+++|+.|+++++ .+...   ..+..+++|+.|+++++ .+.+...  +..
T Consensus       105 l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~  173 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP--LAG  173 (605)
T ss_dssp             STTCTTCCEEECTTS-CCCC--CGGG-GGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG--GTT
T ss_pred             hccCCCCCEEEecCC-CCCC--Cccc-cCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh--hcc
Confidence            245677777777775 3333  1222 24677777777764 44431   23456677777777664 3333222  566


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      +++|+.|+|++| .+++.  ..+..+++|+.|+|++|
T Consensus       174 l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          174 LTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CTTCCEEECCSS-CCCBC--GGGTTCTTCSEEECCSE
T ss_pred             CCCCCEEECcCC-CCCCC--hHHccCCCCCEEEccCC
Confidence            677777777776 44442  34556677777777766

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.30  E-value=1.4e-13  Score=115.52  Aligned_cols=200  Identities=17%  Similarity=0.176  Sum_probs=133.8

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      .+.++.|+++++. ++...     ...+..+++|++|+++++ .+....... ...+++|++|+++++ .++..  ..  
T Consensus        51 ~~~l~~L~L~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l--~~--  117 (330)
T 1xku_A           51 PPDTALLDLQNNK-ITEIK-----DGDFKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLKEL--PE--  117 (330)
T ss_dssp             CTTCCEEECCSSC-CCCBC-----TTTTTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCSBC--CS--
T ss_pred             CCCCeEEECCCCc-CCEeC-----hhhhccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCCcc--Ch--
Confidence            3688999999864 33321     112457799999999986 443322212 256899999999988 44421  11  


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHH-HHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGG-LQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      ...++|++|+++++ .++..... ....+++|+.|+++++ .+...+ ....+..+++|+.|+++++ .+... ..  ..
T Consensus       118 ~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-~~--~~  190 (330)
T 1xku_A          118 KMPKTLQELRVHEN-EITKVRKS-VFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTI-PQ--GL  190 (330)
T ss_dssp             SCCTTCCEEECCSS-CCCBBCHH-HHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCSC-CS--SC
T ss_pred             hhcccccEEECCCC-cccccCHh-HhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-ccccC-Cc--cc
Confidence            12378999999986 44443222 3345899999999995 444211 1223577899999999985 33321 00  12


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .++|++|++++| .++......+.++++|++|++++| .++......+ ..+++|+.|++++|.
T Consensus       191 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          191 PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK  251 (330)
T ss_dssp             CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC
T ss_pred             cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc
Confidence            379999999999 676655556788999999999998 6665433222 367889999888874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.30  E-value=8.2e-14  Score=116.16  Aligned_cols=173  Identities=15%  Similarity=0.078  Sum_probs=91.7

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .+.....    ..+++|++|+++++ .++..... ....+++|++|+++++ .++......+...+++
T Consensus        99 ~~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           99 PSIETLHAANN-NISRVSC----SRGQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDT  170 (317)
T ss_dssp             TTCCEEECCSS-CCSEEEE----CCCSSCEEEECCSS-CCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTT
T ss_pred             CCcCEEECCCC-ccCCcCc----cccCCCCEEECCCC-CCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCc
Confidence            55666666554 2222211    23466666666666 44332111 1134567777777764 3443323333334667


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+...  .. ...+++|+.|+++++ .+.... ..+..+++|++|++++| .++.- ...+..+++|++|
T Consensus       171 L~~L~L~~N-~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~l~~L~~L  242 (317)
T 3o53_A          171 LEHLNLQYN-FIYDV--KG-QVVFAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHF  242 (317)
T ss_dssp             CCEEECTTS-CCCEE--EC-CCCCTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTS-CCCEE-CTTCCCCTTCCEE
T ss_pred             CCEEECCCC-cCccc--cc-ccccccCCEEECCCC-cCCcch-hhhcccCcccEEECcCC-cccch-hhHhhcCCCCCEE
Confidence            777777763 44321  11 113567777777763 343221 12556677777777777 44431 2234556777777


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGA  303 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  303 (313)
                      ++++| .++...+..+...+++|+.+++.+
T Consensus       243 ~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          243 DLRGN-GFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             ECTTC-CCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             EccCC-CccCcCHHHHHhccccceEEECCC
Confidence            77777 555444555555667777776663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.30  E-value=1.2e-13  Score=113.63  Aligned_cols=182  Identities=18%  Similarity=0.154  Sum_probs=93.7

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++++.|+++++ .++..... ....+++|++|+++++ .++....   ...+++|++|+++++ .++.  ++.....+++
T Consensus        31 ~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~  101 (290)
T 1p9a_G           31 KDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHN-QLQS--LPLLGQTLPA  101 (290)
T ss_dssp             TTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSS-CCSS--CCCCTTTCTT
T ss_pred             CCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCC-ccCcccC---CCCCCcCCEEECCCC-cCCc--CchhhccCCC
Confidence            45666666664 33322111 1244566666666665 3332111   034566777776664 3332  1112234567


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus       102 L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          102 LTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             CCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEE
Confidence            777777663 443210 112355667777777663 343322233455667777777776 4443322234556777777


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      ++++| .++...  .-....++|+.|++++|.-.|.|.
T Consensus       178 ~L~~N-~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          178 LLQEN-SLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             ECCSS-CCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ECCCC-cCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence            77776 444211  111134567777777776666663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.30  E-value=1.6e-12  Score=100.64  Aligned_cols=151  Identities=17%  Similarity=0.163  Sum_probs=88.9

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .+....  . ...+++|++|+++++ .+...  . ....+++|++|+++++ .+++.....+ ..+++
T Consensus        44 ~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~  113 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDLT--G-IEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNL-SGLTS  113 (197)
T ss_dssp             HTCCEEEEESS-CCSCCT--T-GGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCC-TTCTT
T ss_pred             CCccEEeccCC-CccChH--H-HhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECC-ccCcccChhh-cCCCC
Confidence            45566666554 222211  1 245667777777666 43322  1 1234677777777764 3443222222 23678


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.+.... .+..+++|+.|+++++..+.+.  ..+..+++|++|++++| .+++.  ..+.++++|++|
T Consensus       114 L~~L~Ls~n-~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n-~i~~~--~~l~~l~~L~~L  186 (197)
T 4ezg_A          114 LTLLDISHS-AHDDSILT-KINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFD-GVHDY--RGIEDFPKLNQL  186 (197)
T ss_dssp             CCEEECCSS-BCBGGGHH-HHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTB-CCCCC--TTGGGCSSCCEE
T ss_pred             CCEEEecCC-ccCcHhHH-HHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCC-CCcCh--HHhccCCCCCEE
Confidence            888888774 55543332 3467788888888875434442  25677888888888888 55553  256778889999


Q ss_pred             eccCCCCCC
Q 021374          274 NLTWCVRIT  282 (313)
Q Consensus       274 ~l~~~~~~~  282 (313)
                      +++++ .++
T Consensus       187 ~l~~N-~i~  194 (197)
T 4ezg_A          187 YAFSQ-TIG  194 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCc-ccC
Confidence            99887 443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=1.3e-13  Score=114.64  Aligned_cols=206  Identities=17%  Similarity=0.127  Sum_probs=132.7

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHH-hcCCCCcEEEecCCcccCHH----HH
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS-STCPELKVFSIYWNVRVTDI----GI  158 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~  158 (313)
                      ..++.+.+... .+++..+..+....  ..++|++|+++++. +.......+. ..+++|++|+++++ .++..    ..
T Consensus        64 ~~l~~l~l~~~-~~~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~  138 (310)
T 4glp_A           64 LRVRRLTVGAA-QVPAQLLVGALRVL--AYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAE  138 (310)
T ss_dssp             CCCCEEEECSC-CCBHHHHHHHHHHH--HHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHH
T ss_pred             cceeEEEEeCC-cCCHHHHHHHHHhc--ccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHH
Confidence            45778888775 45555555443322  23679999999873 3322221221 45789999999988 55532    11


Q ss_pred             HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHH--HHhhCCCCCEEEeCCCCCCCH--
Q 021374          159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQK--ILIKCSSLRSLNLYALSGFTD--  233 (313)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~--~~~~~~~L~~L~l~~~~~~~~--  233 (313)
                      ..+ ..+++|++|+++++ .++..... ....+++|++|+++++ .+.. .++..  ....+++|++|+++++ .++.  
T Consensus       139 ~~~-~~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~  213 (310)
T 4glp_A          139 LQQ-WLKPGLKVLSIAQA-HSPAFSCE-QVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPT  213 (310)
T ss_dssp             HHT-TBCSCCCEEEEECC-SSCCCCTT-SCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHH
T ss_pred             HHh-hhccCCCEEEeeCC-CcchhhHH-HhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchH
Confidence            222 36899999999996 34332211 2234799999999995 4443 22321  1256789999999995 5542  


Q ss_pred             HHHH-HhhcCCCCCEEecCCCCCCChHHHHHhhCC---CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          234 EAYK-KISLLAHLKFLDLCGAQNLSDEGLACIAKC---KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       234 ~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .... .+..+++|++|++++| .+++.....+..+   ++|++|++++| .++... ..+   .++|+.|++++|.
T Consensus       214 ~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~---~~~L~~L~Ls~N~  283 (310)
T 4glp_A          214 GVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP-KGL---PAKLRVLDLSSNR  283 (310)
T ss_dssp             HHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC-SCC---CSCCSCEECCSCC
T ss_pred             HHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchh-hhh---cCCCCEEECCCCc
Confidence            2222 2467899999999999 5665433334444   79999999998 666321 111   3799999999884

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.29  E-value=8.2e-14  Score=119.60  Aligned_cols=85  Identities=18%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. ++..     ....+..+++|+.|+++++ .+.... ..+...+++|++|+++++ .+..... ..
T Consensus        91 ~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~  160 (390)
T 3o6n_A           91 YAHTIQKLYMGFNA-IRYL-----PPHVFQNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DT  160 (390)
T ss_dssp             TCTTCCEEECCSSC-CCCC-----CTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TT
T ss_pred             CCCCcCEEECCCCC-CCcC-----CHHHhcCCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCccCh-hh
Confidence            45667777776653 2221     1111345677777777775 333211 112245677888888776 4432211 11


Q ss_pred             HhcCCCCcEEeccCC
Q 021374          162 VKNCKHIIDLNLSGC  176 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~  176 (313)
                      ...+++|++|+++++
T Consensus       161 ~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          161 FQATTSLQNLQLSSN  175 (390)
T ss_dssp             TSSCTTCCEEECCSS
T ss_pred             ccCCCCCCEEECCCC
Confidence            245678888888775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.29  E-value=8.3e-14  Score=129.72  Aligned_cols=110  Identities=22%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL  270 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  270 (313)
                      +++|+.|+++++ .+... +...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|
T Consensus       441 l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          441 LSKLRDLKLWLN-MLEGE-IPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENL  516 (768)
T ss_dssp             CTTCCEEECCSS-CCCSC-CCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTC
T ss_pred             CCCCCEEECCCC-cccCc-CCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCC
Confidence            455555655553 22211 1122345566666666663 343333444566777777777777 4544444456667777


Q ss_pred             ceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374          271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN  306 (313)
Q Consensus       271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  306 (313)
                      ++|++++| .++...... +..+++|+.|++++|.-
T Consensus       517 ~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          517 AILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CEEECCSS-CCEEECCGG-GGGCTTCCEEECCSSEE
T ss_pred             CEEECCCC-cccCcCCHH-HcCCCCCCEEECCCCcc
Confidence            77777777 444332222 23577788888877753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.29  E-value=1.3e-13  Score=114.78  Aligned_cols=182  Identities=19%  Similarity=0.231  Sum_probs=118.2

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHH-HhcCCCCcEEEecCCcccCHH--HHHHHHh-cCCCCcEEeccCCcccchHHHHHH
Q 021374          112 SLQDLESLNLNGCQKISDKGIEII-SSTCPELKVFSIYWNVRVTDI--GIQHLVK-NCKHIIDLNLSGCKNLLDKSLQLI  187 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~l  187 (313)
                      .+++|++|+++++ .++......+ ...+++|++|+++++ .++..  .+..+.. ..++|++|+++++ .++......+
T Consensus        93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred             CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence            5689999999986 3332211111 256799999999988 55543  2222211 1389999999986 4443222222


Q ss_pred             HHhCCCCcEEecCCCCCCCH-HHHHHHH--hhCCCCCEEEeCCCCCCC---HHHHHHhhcCCCCCEEecCCCCCCChHH-
Q 021374          188 ADNYQELESLNLTRCVKLTD-GGLQKIL--IKCSSLRSLNLYALSGFT---DEAYKKISLLAHLKFLDLCGAQNLSDEG-  260 (313)
Q Consensus       188 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~-  260 (313)
                       ..+++|+.|+++++ .+.. .++....  ..+++|+.|+++++ .+.   ......+..+++|++|++++| .++... 
T Consensus       170 -~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~  245 (312)
T 1wwl_A          170 -RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAG  245 (312)
T ss_dssp             -CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCC
T ss_pred             -ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccc
Confidence             34789999999995 4443 2232222  67899999999985 555   222233457899999999999 565532 


Q ss_pred             HHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          261 LACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       261 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ...+..+++|++|++++| .++... ..+   .++|+.|++++|.
T Consensus       246 ~~~~~~l~~L~~L~Ls~N-~l~~ip-~~~---~~~L~~L~Ls~N~  285 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSFT-GLKQVP-KGL---PAKLSVLDLSYNR  285 (312)
T ss_dssp             CSCCCCCTTCCEEECTTS-CCSSCC-SSC---CSEEEEEECCSSC
T ss_pred             hhhhhhcCCCCEEECCCC-ccChhh-hhc---cCCceEEECCCCC
Confidence            122345789999999998 666211 111   1689999999885

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=5.3e-14  Score=127.39  Aligned_cols=85  Identities=18%  Similarity=0.192  Sum_probs=45.3

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. ++..     ....++.+++|+.|+++++ .++... ..++..+++|++|+++++ .+..... ..
T Consensus        97 ~l~~L~~L~L~~n~-l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~  166 (597)
T 3oja_B           97 YAHTIQKLYMGFNA-IRYL-----PPHVFQNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIED-DT  166 (597)
T ss_dssp             TCTTCCEEECCSSC-CCCC-----CTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCT-TT
T ss_pred             CCCCCCEEECCCCc-CCCC-----CHHHHcCCCCCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCC-cCCCCCh-hh
Confidence            45666777776643 2221     1111345677777777765 333211 112245677777777776 4433211 11


Q ss_pred             HhcCCCCcEEeccCC
Q 021374          162 VKNCKHIIDLNLSGC  176 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~  176 (313)
                      +..+++|++|+++++
T Consensus       167 ~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          167 FQATTSLQNLQLSSN  181 (597)
T ss_dssp             TTTCTTCCEEECTTS
T ss_pred             hhcCCcCcEEECcCC
Confidence            245677888888775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=1.1e-13  Score=122.10  Aligned_cols=59  Identities=10%  Similarity=0.013  Sum_probs=24.9

Q ss_pred             hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeec
Q 021374          240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSS  301 (313)
Q Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l  301 (313)
                      ..+++|+.|++++| .++. ....+..+++|+.|++++| .++...+......++.|+.+++
T Consensus       211 ~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          211 QSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             GGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEec
Confidence            34445555555554 2332 1111333445555555554 3433333333334444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.28  E-value=4.5e-15  Score=123.51  Aligned_cols=208  Identities=14%  Similarity=0.137  Sum_probs=137.1

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++. +......     .+..+++|++|+++++ .+.... ......+++|++|+++++ .++......
T Consensus        98 ~~l~~L~~L~Ls~n~-l~~~~p~-----~~~~l~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~L~~N-~l~~~~p~~  168 (313)
T 1ogq_A           98 AKLTQLHYLYITHTN-VSGAIPD-----FLSQIKTLVTLDFSYN-ALSGTL-PPSISSLPNLVGITFDGN-RISGAIPDS  168 (313)
T ss_dssp             GGCTTCSEEEEEEEC-CEEECCG-----GGGGCTTCCEEECCSS-EEESCC-CGGGGGCTTCCEEECCSS-CCEEECCGG
T ss_pred             hcCCCCCEEECcCCe-eCCcCCH-----HHhCCCCCCEEeCCCC-ccCCcC-ChHHhcCCCCCeEECcCC-cccCcCCHH
Confidence            357899999998764 3321111     1356799999999986 332111 112367899999999988 544222222


Q ss_pred             HHhcCC-CCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHh
Q 021374          161 LVKNCK-HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKI  239 (313)
Q Consensus       161 ~~~~~~-~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  239 (313)
                       ...++ +|++|+++++ .++......+ ..++ |+.|+++++ .+... ....+..+++|+.|+++++ .+... ...+
T Consensus       169 -l~~l~~~L~~L~L~~N-~l~~~~~~~~-~~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~  240 (313)
T 1ogq_A          169 -YGSFSKLFTSMTISRN-RLTGKIPPTF-ANLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQKIHLAKN-SLAFD-LGKV  240 (313)
T ss_dssp             -GGCCCTTCCEEECCSS-EEEEECCGGG-GGCC-CSEEECCSS-EEEEC-CGGGCCTTSCCSEEECCSS-EECCB-GGGC
T ss_pred             -HhhhhhcCcEEECcCC-eeeccCChHH-hCCc-ccEEECcCC-cccCc-CCHHHhcCCCCCEEECCCC-ceeee-cCcc
Confidence             23455 9999999986 3432212222 2344 999999995 44321 2233567899999999985 34322 2225


Q ss_pred             hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374          240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS  309 (313)
Q Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  309 (313)
                      ..+++|++|++++| .++......+.++++|++|++++| .+++.... . ..+++|+.+++.+|..-|.
T Consensus       241 ~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~-~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          241 GLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ-G-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSS-EEEEECCC-S-TTGGGSCGGGTCSSSEEES
T ss_pred             cccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCC-cccccCCC-C-ccccccChHHhcCCCCccC
Confidence            67899999999999 666555556788999999999998 55533221 1 4578999999999874443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.27  E-value=1.1e-11  Score=111.25  Aligned_cols=179  Identities=16%  Similarity=0.196  Sum_probs=100.9

Q ss_pred             CCCCcEEecCCCCCCChHHHHH--HHhcCCCCcEEEecCCcccCHHH-HHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374          113 LQDLESLNLNGCQKISDKGIEI--ISSTCPELKVFSIYWNVRVTDIG-IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD  189 (313)
Q Consensus       113 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~  189 (313)
                      +++|+.|+++++ .+.......  ....+++|++|+++++ .++... .......+++|++|+++++ .++.  ++....
T Consensus       333 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~  407 (549)
T 2z81_A          333 LKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQ  407 (549)
T ss_dssp             CTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCC
T ss_pred             CccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhc
Confidence            366666666664 333322211  1234566666666666 443321 1123345666666666664 3331  111112


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN  269 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  269 (313)
                      .+++|+.|+++++ .+..  +..  ...++|+.|+++++ .++..    ...+++|++|++++| .++.  +.....+++
T Consensus       408 ~~~~L~~L~Ls~N-~l~~--l~~--~~~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N-~l~~--ip~~~~l~~  474 (549)
T 2z81_A          408 WPEKMRFLNLSST-GIRV--VKT--CIPQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRN-KLKT--LPDASLFPV  474 (549)
T ss_dssp             CCTTCCEEECTTS-CCSC--CCT--TSCTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSS-CCSS--CCCGGGCTT
T ss_pred             ccccccEEECCCC-Cccc--ccc--hhcCCceEEECCCC-Chhhh----cccCChhcEEECCCC-ccCc--CCCcccCcc
Confidence            3456666666663 3321  000  01246777777664 33321    246889999999998 5552  222456889


Q ss_pred             CceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       270 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      |++|++++| .++..... .+..+++|+.|++++|.--|.|+
T Consensus       475 L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          475 LLVMKISRN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCEEECCSS-CCCCCCTT-GGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEecCCC-ccCCcCHH-HHhcCcccCEEEecCCCccCCCc
Confidence            999999988 66653322 23468899999999998777775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.25  E-value=1.3e-13  Score=124.77  Aligned_cols=65  Identities=14%  Similarity=0.165  Sum_probs=39.4

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccC
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVT  154 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  154 (313)
                      ..+++|+.|+++++. ++.     +....+..+++|+.|+++++ .+...... ....+++|++|+++++ .++
T Consensus       120 ~~l~~L~~L~L~~n~-l~~-----l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~  184 (597)
T 3oja_B          120 QNVPLLTVLVLERND-LSS-----LPRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSN-RLT  184 (597)
T ss_dssp             TTCTTCCEEECCSSC-CCC-----CCTTTTTTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECTTS-CCS
T ss_pred             cCCCCCCEEEeeCCC-CCC-----CCHHHhccCCCCCEEEeeCC-cCCCCChh-hhhcCCcCcEEECcCC-CCC
Confidence            356788888888763 331     11111356688888888876 33332211 1256788888888877 444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.25  E-value=3.6e-12  Score=111.44  Aligned_cols=201  Identities=14%  Similarity=0.140  Sum_probs=142.8

Q ss_pred             ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhc
Q 021374           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (313)
Q Consensus        59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  138 (313)
                      .+.+++.+......   .  ....+++|+.|+++++. ++...        +..+++|+.|+++++ .++...    ...
T Consensus        44 L~~L~Ls~n~l~~~---~--~l~~l~~L~~L~Ls~n~-l~~~~--------~~~l~~L~~L~Ls~N-~l~~~~----~~~  104 (457)
T 3bz5_A           44 LTSLDCHNSSITDM---T--GIEKLTGLTKLICTSNN-ITTLD--------LSQNTNLTYLACDSN-KLTNLD----VTP  104 (457)
T ss_dssp             CCEEECCSSCCCCC---T--TGGGCTTCSEEECCSSC-CSCCC--------CTTCTTCSEEECCSS-CCSCCC----CTT
T ss_pred             CCEEEccCCCcccC---h--hhcccCCCCEEEccCCc-CCeEc--------cccCCCCCEEECcCC-CCceee----cCC
Confidence            36677765443321   1  24467899999999864 44321        457789999999986 444432    367


Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS  218 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  218 (313)
                      +++|++|+++++ .++...    ...+++|++|+++++ .++...    ...+++|+.|+++++..+...    -+..++
T Consensus       105 l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~----~~~~l~  170 (457)
T 3bz5_A          105 LTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL----DVTPQT  170 (457)
T ss_dssp             CTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC----CCTTCT
T ss_pred             CCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc----ccccCC
Confidence            899999999988 555431    356889999999986 454421    235789999999986444432    145679


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                      +|+.|+++++ .++...   +..+++|++|++++| .++..   .+..+++|++|++++| .++...    ...+++|+.
T Consensus       171 ~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N-~l~~ip----~~~l~~L~~  237 (457)
T 3bz5_A          171 QLTTLDCSFN-KITELD---VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSN-KLTEID----VTPLTQLTY  237 (457)
T ss_dssp             TCCEEECCSS-CCCCCC---CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSS-CCSCCC----CTTCTTCSE
T ss_pred             cCCEEECCCC-ccceec---cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCC-cccccC----ccccCCCCE
Confidence            9999999985 444421   678899999999998 56553   3778999999999998 676632    447899999


Q ss_pred             eecCCcc
Q 021374          299 LSSGAEM  305 (313)
Q Consensus       299 L~l~~~~  305 (313)
                      |++++|.
T Consensus       238 L~l~~N~  244 (457)
T 3bz5_A          238 FDCSVNP  244 (457)
T ss_dssp             EECCSSC
T ss_pred             EEeeCCc
Confidence            9999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.25  E-value=6.7e-13  Score=110.62  Aligned_cols=197  Identities=16%  Similarity=0.161  Sum_probs=116.8

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. +.....       +..+++|+.|+++++ .++..      ...++|++|+++++ .++...    
T Consensus        56 ~l~~L~~L~Ls~n~-l~~~~~-------~~~l~~L~~L~Ls~n-~l~~l------~~~~~L~~L~l~~n-~l~~~~----  115 (317)
T 3o53_A           56 PFTKLELLNLSSNV-LYETLD-------LESLSTLRTLDLNNN-YVQEL------LVGPSIETLHAANN-NISRVS----  115 (317)
T ss_dssp             TCTTCCEEECTTSC-CEEEEE-------ETTCTTCCEEECCSS-EEEEE------EECTTCCEEECCSS-CCSEEE----
T ss_pred             CCCcCCEEECCCCc-CCcchh-------hhhcCCCCEEECcCC-ccccc------cCCCCcCEEECCCC-ccCCcC----
Confidence            44566666666543 221110       234566666666654 22211      12366666666665 443321    


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      ...+++|++|+++++ .++......+ ..+++|+.|+++++ .+.......+...+++|+.|+++++ .++..  .....
T Consensus       116 ~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~~  189 (317)
T 3o53_A          116 CSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVV  189 (317)
T ss_dssp             ECCCSSCEEEECCSS-CCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCC
T ss_pred             ccccCCCCEEECCCC-CCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccccc
Confidence            123567888888875 3433211112 34688889998884 5554333334456788999999884 44332  22235


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccc
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCS  309 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  309 (313)
                      +++|++|++++| .++... ..+..+++|++|++++| .++..  ...+..+++|+.|++++|.-.|.
T Consensus       190 l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          190 FAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             CTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCCCBHH
T ss_pred             cccCCEEECCCC-cCCcch-hhhcccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCCccCc
Confidence            789999999998 565432 23667899999999998 66642  12234678999999999875543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.23  E-value=1.2e-11  Score=108.17  Aligned_cols=197  Identities=18%  Similarity=0.207  Sum_probs=136.3

Q ss_pred             ceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhc
Q 021374           59 WLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  138 (313)
Q Consensus        59 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  138 (313)
                      .+.+++.......      +....+++|+.|+++++. ++...        +..+++|+.|+++++ .++...    ...
T Consensus        66 L~~L~Ls~n~l~~------~~~~~l~~L~~L~Ls~N~-l~~~~--------~~~l~~L~~L~L~~N-~l~~l~----~~~  125 (457)
T 3bz5_A           66 LTKLICTSNNITT------LDLSQNTNLTYLACDSNK-LTNLD--------VTPLTKLTYLNCDTN-KLTKLD----VSQ  125 (457)
T ss_dssp             CSEEECCSSCCSC------CCCTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECCSS-CCSCCC----CTT
T ss_pred             CCEEEccCCcCCe------EccccCCCCCEEECcCCC-Cceee--------cCCCCcCCEEECCCC-cCCeec----CCC
Confidence            3566666544222      124567899999999864 44321        457799999999986 444322    367


Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS  218 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  218 (313)
                      +++|++|+++++ .++...    ...+++|++|+++++..++...    ...+++|+.|+++++ .+..  +.  +..++
T Consensus       126 l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~--l~--l~~l~  191 (457)
T 3bz5_A          126 NPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITE--LD--VSQNK  191 (457)
T ss_dssp             CTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCC--CC--CTTCT
T ss_pred             CCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccce--ec--cccCC
Confidence            899999999988 555431    3568899999999875554431    234789999999984 5554  22  56789


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                      +|+.|+++++ .++..   .++.+++|++|++++| .++..  . +..+++|++|++++| .++...    ...+++|+.
T Consensus       192 ~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N-~l~~i--p-~~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~  258 (457)
T 3bz5_A          192 LLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSN-KLTEI--D-VTPLTQLTYFDCSVN-PLTELD----VSTLSKLTT  258 (457)
T ss_dssp             TCCEEECCSS-CCSCC---CCTTCTTCSEEECCSS-CCSCC--C-CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCE
T ss_pred             CCCEEECcCC-cCCee---ccccCCCCCEEECcCC-ccccc--C-ccccCCCCEEEeeCC-cCCCcC----HHHCCCCCE
Confidence            9999999884 44432   3678899999999999 56652  2 778999999999998 666543    234565555


Q ss_pred             eecC
Q 021374          299 LSSG  302 (313)
Q Consensus       299 L~l~  302 (313)
                      |+++
T Consensus       259 L~l~  262 (457)
T 3bz5_A          259 LHCI  262 (457)
T ss_dssp             EECT
T ss_pred             Eecc
Confidence            4443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.23  E-value=5.1e-13  Score=107.49  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++++.|+++++ .+...... ....+++|++|+++++ .+..... .....+++|++|+++++ .++.... .....+++
T Consensus        35 ~~l~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~  108 (251)
T 3m19_A           35 ADTEKLDLQST-GLATLSDA-TFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANN-QLASLPL-GVFDHLTQ  108 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred             CCCCEEEccCC-CcCccCHh-HhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCC-cccccCh-hHhcccCC
Confidence            67899999886 33332211 2256789999999987 5543211 22345788999999885 4443211 12234788


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus       109 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          109 LDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             CCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence            999999884 554311 122456788999999874 554433345667888999999888 5554433346678889999


Q ss_pred             eccCCCCCC
Q 021374          274 NLTWCVRIT  282 (313)
Q Consensus       274 ~l~~~~~~~  282 (313)
                      ++++| .++
T Consensus       185 ~l~~N-~~~  192 (251)
T 3m19_A          185 TLFGN-QFD  192 (251)
T ss_dssp             ECCSC-CBC
T ss_pred             EeeCC-cee
Confidence            99887 443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.22  E-value=1.1e-12  Score=112.64  Aligned_cols=200  Identities=20%  Similarity=0.177  Sum_probs=113.6

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. +.....     ..+..+++|+.|+++++ .+..... .....+++|++|+++++ .++.. ...+
T Consensus        67 ~l~~L~~L~L~~n~-i~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l-~~~~  136 (390)
T 3o6n_A           67 SFRQVELLNLNDLQ-IEEIDT-----YAFAYAHTIQKLYMGFN-AIRYLPP-HVFQNVPLLTVLVLERN-DLSSL-PRGI  136 (390)
T ss_dssp             HCCCCSEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC-CTTT
T ss_pred             ccccCcEEECCCCc-ccccCh-----hhccCCCCcCEEECCCC-CCCcCCH-HHhcCCCCCCEEECCCC-ccCcC-CHHH
Confidence            46788888888753 332111     11456788999999886 3333221 12256788999999887 54421 1122


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEE------------------
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSL------------------  223 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L------------------  223 (313)
                      ...+++|++|+++++ .++..... ....+++|+.|+++++ .+....    ...+++|+.|                  
T Consensus       137 ~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~  209 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEE  209 (390)
T ss_dssp             TTTCTTCCEEECCSS-CCCBCCTT-TTSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSE
T ss_pred             hcCCCCCcEEECCCC-ccCccChh-hccCCCCCCEEECCCC-cCCccc----cccccccceeecccccccccCCCCcceE
Confidence            346788999999886 34332111 1234788999999884 444321    1233443333                  


Q ss_pred             ----------------------EeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCC
Q 021374          224 ----------------------NLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRI  281 (313)
Q Consensus       224 ----------------------~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  281 (313)
                                            +++++ .+.+  ...+..+++|++|++++| .++......+.++++|++|++++| .+
T Consensus       210 L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l  284 (390)
T 3o6n_A          210 LDASHNSINVVRGPVNVELTILKLQHN-NLTD--TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RL  284 (390)
T ss_dssp             EECCSSCCCEEECCCCSSCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CC
T ss_pred             EECCCCeeeeccccccccccEEECCCC-CCcc--cHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cC
Confidence                                  33332 2222  123456677777777776 455443444566777777777776 55


Q ss_pred             ChHHHHHHHHhCCCccEeecCCcc
Q 021374          282 TDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       282 ~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +....  ....+|+|+.|++++|.
T Consensus       285 ~~~~~--~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          285 VALNL--YGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CEEEC--SSSCCTTCCEEECCSSC
T ss_pred             cccCc--ccCCCCCCCEEECCCCc
Confidence            44211  11346777777777763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.21  E-value=2.7e-12  Score=115.49  Aligned_cols=182  Identities=18%  Similarity=0.211  Sum_probs=111.8

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccch-HHHHHHHHhCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQ  192 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~  192 (313)
                      .+|+.|+++++.. ....+   ...+++|++|+++++ .+++.... ....+++|++|+++++ .++. ..++.....++
T Consensus       331 ~~L~~L~l~~n~~-~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~  403 (562)
T 3a79_B          331 MNIKMLSISDTPF-IHMVC---PPSPSSFTFLNFTQN-VFTDSVFQ-GCSTLKRLQTLILQRN-GLKNFFKVALMTKNMS  403 (562)
T ss_dssp             CCCSEEEEESSCC-CCCCC---CSSCCCCCEEECCSS-CCCTTTTT-TCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCT
T ss_pred             CcceEEEccCCCc-ccccC---ccCCCCceEEECCCC-ccccchhh-hhcccCCCCEEECCCC-CcCCcccchhhhcCCC
Confidence            4566666666522 21110   145678888888887 55542222 2245788888888885 4443 22333334578


Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC-CCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL-AHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      +|+.|+++++ .+........+..+++|+.|+++++ .+++..+.   .+ ++|++|++++| .++. ....+.++++|+
T Consensus       404 ~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~l~~~L~~L~L~~N-~l~~-ip~~~~~l~~L~  476 (562)
T 3a79_B          404 SLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFR---CLPPKVKVLDLHNN-RIMS-IPKDVTHLQALQ  476 (562)
T ss_dssp             TCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGS---SCCTTCSEEECCSS-CCCC-CCTTTTSSCCCS
T ss_pred             CCCEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchhh---hhcCcCCEEECCCC-cCcc-cChhhcCCCCCC
Confidence            8888888884 4432001112345688888888884 45443222   23 68999999888 5553 222344788999


Q ss_pred             eeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          272 SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       272 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      +|++++| .++..... .+..+++|+.|++++|.--|.|+
T Consensus       477 ~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          477 ELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             EEECCSS-CCCCCCTT-STTTCTTCCCEECCSCCBCCCHH
T ss_pred             EEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCCcCCCcc
Confidence            9999888 66532222 24467889999999988777775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.21  E-value=7.7e-13  Score=120.54  Aligned_cols=203  Identities=14%  Similarity=0.134  Sum_probs=119.5

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCCh-HHHHHHHh-----cCCCCcEEEecCCcccCH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEIISS-----TCPELKVFSIYWNVRVTD  155 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~  155 (313)
                      .+++|+.|+++++..... ..     ..+..+++|+.|+++++..++. .....+..     .+++|++|+++++ .++ 
T Consensus       247 ~l~~L~~L~L~~n~l~~~-~p-----~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~-  318 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTK-LP-----TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK-  318 (636)
T ss_dssp             GCTTCCEEEEECCTTCSS-CC-----TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS-
T ss_pred             ccCCCCEEEecCCcCCcc-Ch-----HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC-
Confidence            678999999998642221 11     1245778999999999743665 33333322     2489999999988 555 


Q ss_pred             HHHHH--HHhcCCCCcEEeccCCcccc-hHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC-CCEEEeCCCCCC
Q 021374          156 IGIQH--LVKNCKHIIDLNLSGCKNLL-DKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS-LRSLNLYALSGF  231 (313)
Q Consensus       156 ~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~  231 (313)
                       .++.  ....+++|++|+++++. ++ .  ++. ...+++|+.|+++++ .+.  .++..+..+++ |+.|+++++ .+
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~-l~g~--ip~-~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N-~l  389 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQ-LEGK--LPA-FGSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHN-KL  389 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCC-CEEE--CCC-CEEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSS-CC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCc-Cccc--hhh-hCCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCC-cC
Confidence             2333  44678899999998863 43 2  111 233577888888774 333  12222455666 888888774 33


Q ss_pred             CHHHHHHhhc--CCCCCEEecCCCCCCChHHHHHhh-------CCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecC
Q 021374          232 TDEAYKKISL--LAHLKFLDLCGAQNLSDEGLACIA-------KCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSG  302 (313)
Q Consensus       232 ~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~  302 (313)
                      . .....+..  +++|++|++++| .++......+.       .+++|++|++++| .++.. ...++..+++|+.|+++
T Consensus       390 ~-~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          390 K-YIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLM  465 (636)
T ss_dssp             S-SCCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECC
T ss_pred             c-ccchhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECC
Confidence            3 11222222  336777777776 44443323333       4557777777766 55422 22334456677777776


Q ss_pred             Ccc
Q 021374          303 AEM  305 (313)
Q Consensus       303 ~~~  305 (313)
                      +|.
T Consensus       466 ~N~  468 (636)
T 4eco_A          466 GNM  468 (636)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.20  E-value=1.2e-12  Score=115.34  Aligned_cols=219  Identities=16%  Similarity=0.132  Sum_probs=148.1

Q ss_pred             CcceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHH
Q 021374           57 SLWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  136 (313)
Q Consensus        57 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  136 (313)
                      +..+.+++.+...... ...  .+..+++|+.|+++++. ++....       +..+++|+.|+++++ .++..      
T Consensus        34 ~~L~~L~Ls~n~l~~~-~~~--~~~~l~~L~~L~Ls~N~-l~~~~~-------l~~l~~L~~L~Ls~N-~l~~l------   95 (487)
T 3oja_A           34 WNVKELDLSGNPLSQI-SAA--DLAPFTKLELLNLSSNV-LYETLD-------LESLSTLRTLDLNNN-YVQEL------   95 (487)
T ss_dssp             GGCCEEECCSSCCCCC-CGG--GGTTCTTCCEEECTTSC-CEEEEE-------CTTCTTCCEEECCSS-EEEEE------
T ss_pred             CCccEEEeeCCcCCCC-CHH--HHhCCCCCCEEEeeCCC-CCCCcc-------cccCCCCCEEEecCC-cCCCC------
Confidence            3457777776543321 111  23467899999999874 332111       457799999999986 44332      


Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK  216 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  216 (313)
                      ...++|+.|+++++ .++....    ..+++|+.|+++++ .++......+ ..+++|+.|++++ +.+.......+...
T Consensus        96 ~~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~l~~~  167 (487)
T 3oja_A           96 LVGPSIETLHAANN-NISRVSC----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAAS  167 (487)
T ss_dssp             EECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTT-SCCCEEEGGGGGGG
T ss_pred             CCCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCC-CCCCCcChHHHhhh
Confidence            23489999999988 5554322    24689999999996 4444222122 3479999999999 46665333344457


Q ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374          217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL  296 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  296 (313)
                      +++|+.|+++++ .++..  .....+++|++|++++| .++... ..+..+++|+.|++++| .++..  ...+..+++|
T Consensus       168 l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~l~~L~~L~Ls~N-~l~~l--p~~l~~l~~L  239 (487)
T 3oja_A          168 SDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNN-KLVLI--EKALRFSQNL  239 (487)
T ss_dssp             TTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTS-CCCEE--CTTCCCCTTC
T ss_pred             CCcccEEecCCC-ccccc--cccccCCCCCEEECCCC-CCCCCC-HhHcCCCCccEEEecCC-cCccc--chhhccCCCC
Confidence            899999999985 45432  22336899999999999 666532 23778899999999998 66642  1223457899


Q ss_pred             cEeecCCcccccc
Q 021374          297 EFLSSGAEMNCCS  309 (313)
Q Consensus       297 ~~L~l~~~~~~~~  309 (313)
                      +.|++++|.-.|.
T Consensus       240 ~~L~l~~N~l~c~  252 (487)
T 3oja_A          240 EHFDLRGNGFHCG  252 (487)
T ss_dssp             CEEECTTCCBCHH
T ss_pred             CEEEcCCCCCcCc
Confidence            9999999865543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.19  E-value=6.3e-13  Score=119.24  Aligned_cols=208  Identities=14%  Similarity=0.122  Sum_probs=137.8

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      .++++.|+++++. ++....     ..+..+++|++|+++++ .+....... ...+++|++|+++++ .+....... +
T Consensus        25 ~~~L~~L~Ls~n~-l~~~~~-----~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~   94 (549)
T 2z81_A           25 TAAMKSLDLSFNK-ITYIGH-----GDLRACANLQVLILKSS-RINTIEGDA-FYSLGSLEHLDLSDN-HLSSLSSSW-F   94 (549)
T ss_dssp             CTTCCEEECCSSC-CCEECS-----STTSSCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCSCCHHH-H
T ss_pred             CCCccEEECcCCc-cCccCh-----hhhhcCCcccEEECCCC-CcCccChhh-ccccccCCEEECCCC-ccCccCHHH-h
Confidence            3689999999864 432211     11467799999999986 444332222 256899999999988 555432222 3


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|++|+++++ .++..........+++|+.|+++++..+.... ...+..+++|+.|+++++ .+.......+..+
T Consensus        95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l  171 (549)
T 2z81_A           95 GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKAL-SLRNYQSQSLKSI  171 (549)
T ss_dssp             TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred             ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCC-cccccChhhhhcc
Confidence            57899999999986 34331121223457899999999864333211 112467899999999884 5555455667788


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHH--HHHHHHhCCCccEeecCCcc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVG--VMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++|+++++ ..+......+..+++|++|++++| .++...  ...+...+++|+.|++.++.
T Consensus       172 ~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          172 RDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             SEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             ccCceEecccC-cccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccc
Confidence            99999999988 454433333457899999999988 554421  11122357889999998874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=5.3e-12  Score=117.85  Aligned_cols=181  Identities=16%  Similarity=0.190  Sum_probs=89.8

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH-------hcCCCCcEEeccCCcccchHHH
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV-------KNCKHIIDLNLSGCKNLLDKSL  184 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~l  184 (313)
                      .+++|+.|+|+++......+  .....+++|+.|+++++..++...++...       ..+++|+.|+++++ .++.  +
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--i  563 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--F  563 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--C
T ss_pred             cCCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--c
Confidence            56777777777753222111  22256677777777776325541122111       23357777777775 3332  2


Q ss_pred             HH--HHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC-CCEEecCCCC-------
Q 021374          185 QL--IADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH-LKFLDLCGAQ-------  254 (313)
Q Consensus       185 ~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~-------  254 (313)
                      +.  ....+++|+.|+++++ .+.  .++ .+..+++|+.|+++++ .+. .....+..+++ |++|++++|.       
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~  637 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI  637 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred             CChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence            22  2334677777777763 343  122 2345556666666553 222 11222334444 5555555442       


Q ss_pred             -----------------CCChHHH---HHhh--CCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          255 -----------------NLSDEGL---ACIA--KCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       255 -----------------~~~~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                                       .++....   ..+.  .+++|++|++++| .++.. ...++..+++|+.|++++|.
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc
Confidence                             2211100   0001  1236667777666 45422 23344567788888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.19  E-value=5.2e-13  Score=108.67  Aligned_cols=187  Identities=19%  Similarity=0.192  Sum_probs=128.7

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .+...... ....+++|++|+++++ .++... ...+..+++|++|+++++ .++.... .....+++
T Consensus        37 ~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~  110 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVN  110 (270)
T ss_dssp             TTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSS
T ss_pred             CCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccC
Confidence            57999999986 33332211 2256899999999987 444221 122346799999999985 3443221 12235789


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|
T Consensus       111 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  186 (270)
T 2o6q_A          111 LAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL  186 (270)
T ss_dssp             CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEE
Confidence            999999984 444311 123467899999999985 454433444678899999999998 5655443446778999999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCccccccccC
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCSH  312 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  312 (313)
                      ++++| .++..... .+..+++|+.|++++|.--|.|..
T Consensus       187 ~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          187 KLDNN-QLKRVPEG-AFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             ECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             ECCCC-cCCcCCHH-HhccccCCCEEEecCCCeeCCCcc
Confidence            99998 66543322 234688999999999988888863

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.19  E-value=1e-13  Score=116.40  Aligned_cols=205  Identities=20%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++. ++...     ...+..+++|++|+++++ .++....    ...++|++|+++++ .+.... ..
T Consensus        75 ~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~l~~----~~~~~L~~L~l~~n-~i~~~~-~~  141 (332)
T 2ft3_A           75 KGLQHLYALVLVNNK-ISKIH-----EKAFSPLRKLQKLYISKN-HLVEIPP----NLPSSLVELRIHDN-RIRKVP-KG  141 (332)
T ss_dssp             TTCTTCCEEECCSSC-CCEEC-----GGGSTTCTTCCEEECCSS-CCCSCCS----SCCTTCCEEECCSS-CCCCCC-SG
T ss_pred             hCCCCCcEEECCCCc-cCccC-----HhHhhCcCCCCEEECCCC-cCCccCc----cccccCCEEECCCC-ccCccC-Hh
Confidence            355677777777653 32211     111345677777777765 3321110    12267777777766 443221 11


Q ss_pred             HHhcCCCCcEEeccCCcccchHHH-HHHHHhC--------------------CCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          161 LVKNCKHIIDLNLSGCKNLLDKSL-QLIADNY--------------------QELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       161 ~~~~~~~L~~L~l~~~~~~~~~~l-~~l~~~~--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      ....+++|++|+++++ .++.... ......+                    ++|+.|+++++ .+..... ..+..+++
T Consensus       142 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~i~~~~~-~~l~~l~~  218 (332)
T 2ft3_A          142 VFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KIQAIEL-EDLLRYSK  218 (332)
T ss_dssp             GGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS-CCCCCCT-TSSTTCTT
T ss_pred             HhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC-cCCccCH-HHhcCCCC
Confidence            2345778888888775 3322110 0000111                    23334444332 2221100 11234455


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHh-----CC
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEG-----CS  294 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~~  294 (313)
                      |+.|+++++ .+.......+..+++|++|++++| .++. ....+.++++|++|++++| .++..+...+...     .+
T Consensus       219 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~-lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~  294 (332)
T 2ft3_A          219 LYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSR-VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA  294 (332)
T ss_dssp             CSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCB-CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred             CCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCee-cChhhhcCccCCEEECCCC-CCCccChhHccccccccccc
Confidence            566665552 333222233455566666666665 3432 1122455666666666665 4544333222211     34


Q ss_pred             CccEeecCCcc
Q 021374          295 SLEFLSSGAEM  305 (313)
Q Consensus       295 ~L~~L~l~~~~  305 (313)
                      .|+.|++++|.
T Consensus       295 ~l~~L~l~~N~  305 (332)
T 2ft3_A          295 YYNGISLFNNP  305 (332)
T ss_dssp             CBSEEECCSSS
T ss_pred             cccceEeecCc
Confidence            56666666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.18  E-value=2.9e-11  Score=99.40  Aligned_cols=166  Identities=25%  Similarity=0.267  Sum_probs=112.3

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++. +...  .. ...+++|++|+++++ .+++..  . ...+++|++|+++++ .+++  +.. ...+++
T Consensus        46 ~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~  113 (291)
T 1h6t_A           46 NSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDEN-KVKD--LSS-LKDLKK  113 (291)
T ss_dssp             HTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCC--GGG-GTTCTT
T ss_pred             CcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCC-cCCC--Chh-hccCCC
Confidence            677888887763 3222  11 256788899988887 554422  1 456788899988885 4444  222 234788


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.+  +. .+..+++|+.|+++++ .+...  ..+..+++|++|++++| .+++...  +..+++|++|
T Consensus       114 L~~L~L~~n-~i~~--~~-~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          114 LKSLSLEHN-GISD--IN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             CCEEECTTS-CCCC--CG-GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEE
T ss_pred             CCEEECCCC-cCCC--Ch-hhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEE
Confidence            899998884 4544  22 2467788899988874 44432  45678888999999888 5554332  7778889999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++++| .+++..  . ...+++|+.|++++|.
T Consensus       184 ~L~~N-~i~~l~--~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          184 YLSKN-HISDLR--A-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ECCSS-CCCBCG--G-GTTCTTCSEEEEEEEE
T ss_pred             ECCCC-cCCCCh--h-hccCCCCCEEECcCCc
Confidence            99888 666542  2 3467888888888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.17  E-value=2.6e-11  Score=108.02  Aligned_cols=132  Identities=19%  Similarity=0.249  Sum_probs=81.6

Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhhCCCCCEEEeCCCCCCCH-HHHHHhhc
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGFTD-EAYKKISL  241 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~  241 (313)
                      .+++|++|+++++ .+++.....+ ..+++|+.|+++++ .+.. ..+...+..+++|+.|+++++ .+.. .....+..
T Consensus       322 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~  397 (520)
T 2z7x_B          322 KISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSW  397 (520)
T ss_dssp             SCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred             hCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhcc
Confidence            5677888888875 3443222222 34678888888874 5553 234445677788888888874 3433 22223456


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +++|++|++++| .++......+  .++|++|++++| .++.. ...+. .+++|+.|++++|.
T Consensus       398 l~~L~~L~Ls~N-~l~~~~~~~l--~~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          398 TKSLLSLNMSSN-ILTDTIFRCL--PPRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASNQ  455 (520)
T ss_dssp             CTTCCEEECCSS-CCCGGGGGSC--CTTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSSC
T ss_pred             CccCCEEECcCC-CCCcchhhhh--cccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCCc
Confidence            778888888887 5554332212  168888888888 66522 12223 68889999998874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.17  E-value=1e-11  Score=91.41  Aligned_cols=106  Identities=25%  Similarity=0.278  Sum_probs=61.8

Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChH-HHHHhhCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDE-GLACIAKCK  268 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~  268 (313)
                      .+++|+.|+++++ .+...   ..+..+++|+.|+++++ .+.......+..+++|++|++++| .+++. ....+..++
T Consensus        40 ~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~  113 (149)
T 2je0_A           40 EFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLE  113 (149)
T ss_dssp             TCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCT
T ss_pred             hcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCC
Confidence            3566666666663 33331   22345666777777663 343323344455777777777777 45543 234566677


Q ss_pred             CCceeeccCCCCCChHHH--HHHHHhCCCccEeecC
Q 021374          269 NLVSLNLTWCVRITDVGV--MAIAEGCSSLEFLSSG  302 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~  302 (313)
                      +|++|++++| .+++...  ...+..+|+|+.|+++
T Consensus       114 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          114 NLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            7777777777 5544332  2345567778877765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.15  E-value=1.6e-11  Score=90.45  Aligned_cols=105  Identities=21%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLL  242 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~  242 (313)
                      .+++|+.|+++++ .++..  . ....+++|+.|+++++ .+... +...+..+++|+.|+++++ .+++. .+..+..+
T Consensus        40 ~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l  112 (149)
T 2je0_A           40 EFEELEFLSTINV-GLTSI--A-NLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL  112 (149)
T ss_dssp             TCTTCCEEECTTS-CCCCC--T-TCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred             hcCCCcEEECcCC-CCCCc--h-hhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence            3455555555553 23221  1 1123566666666663 34321 3344456777777777764 34442 33556677


Q ss_pred             CCCCEEecCCCCCCChHHH---HHhhCCCCCceeecc
Q 021374          243 AHLKFLDLCGAQNLSDEGL---ACIAKCKNLVSLNLT  276 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~  276 (313)
                      ++|++|++++| .+++...   ..+..+++|++|+++
T Consensus       113 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          113 ENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            78888888877 4544322   346667888888775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.15  E-value=3.2e-11  Score=108.71  Aligned_cols=166  Identities=25%  Similarity=0.269  Sum_probs=86.7

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++. +....  . ...+++|+.|+|+++ .+.....   +..+++|+.|+++++ .+..  ++.+ ..+++
T Consensus        43 ~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~  110 (605)
T 1m9s_A           43 NSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSSL-KDLKK  110 (605)
T ss_dssp             TTCCCCBCTTCC-CCCCT--T-GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCC--CTTS-TTCTT
T ss_pred             CCCCEEECcCCC-CCCCh--H-HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCC--Chhh-ccCCC
Confidence            566666666542 22211  1 245666666666665 3332211   345666666666664 3333  1122 23566


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.+  +. -+..+++|+.|+++++ .+...  ..+..+++|+.|+|++| .+++...  +..+++|++|
T Consensus       111 L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          111 LKSLSLEHN-GISD--IN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             CCEEECTTS-CCCC--CG-GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEE
T ss_pred             CCEEEecCC-CCCC--Cc-cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEE
Confidence            666666663 3332  11 1355666666666663 33332  34556666666666666 4443222  5566666666


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +|++| .+++.  .. +..+++|+.|+|++|.
T Consensus       181 ~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          181 YLSKN-HISDL--RA-LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred             ECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence            66666 55443  11 2346666666666653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.15  E-value=1.8e-12  Score=106.51  Aligned_cols=177  Identities=15%  Similarity=0.150  Sum_probs=122.7

Q ss_pred             CCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHh
Q 021374          111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN  190 (313)
Q Consensus       111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~  190 (313)
                      +.+++++.+++.+. .++....    ...++++.|+++++ .++..... .+..+++|++|+++++ .++....  . ..
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--~-~~   75 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPP----DLPKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV--D-GT   75 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC--C-SC
T ss_pred             cccCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCC-ccCcccC--C-CC
Confidence            45678888888774 3332110    22368999999988 55543222 2356899999999986 4443211  1 45


Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL  270 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  270 (313)
                      +++|+.|+++++ .+..  +...+..+++|+.|+++++ .++......+..+++|++|++++| .++......+.++++|
T Consensus        76 l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           76 LPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             CTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred             CCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCC
Confidence            899999999994 5542  3333467899999999984 555433445678899999999999 5654433446678999


Q ss_pred             ceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          271 VSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       271 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++++| .++.... ..+..+++|+.|++++|.
T Consensus       151 ~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          151 EKLSLANN-NLTELPA-GLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-cCCccCH-HHhcCcCCCCEEECCCCc
Confidence            99999998 6654322 234468899999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.14  E-value=2.9e-09  Score=81.16  Aligned_cols=125  Identities=15%  Similarity=0.142  Sum_probs=84.4

Q ss_pred             HHHHHHhcCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCC
Q 021374          157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSG  230 (313)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~  230 (313)
                      .+..+....+.|++|+++++..+++.+...+..   ..++|++|++++ +.+.+.+...+   +...++|++|++++ ..
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~  104 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVES-NF  104 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCS-SC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcC-Cc
Confidence            355556667888888888854677776665554   346788888888 46777665443   34557788888877 46


Q ss_pred             CCHHHHHHhh----cCCCCCEEec--CCCCCCChHHHHHhh----CCCCCceeeccCCCCCChHH
Q 021374          231 FTDEAYKKIS----LLAHLKFLDL--CGAQNLSDEGLACIA----KCKNLVSLNLTWCVRITDVG  285 (313)
Q Consensus       231 ~~~~~~~~l~----~~~~L~~L~l--~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~  285 (313)
                      +.+.+...++    ..++|++|+|  ++| .+++.+...++    ..++|++|++++| .+++.+
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~  167 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL  167 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence            7776655443    5667888888  666 67777655443    4577888888777 666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.14  E-value=2e-12  Score=118.97  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=29.2

Q ss_pred             hcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          240 SLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      ..+++|++|++++| .++......+.++++|++|++++| .++.... ..+..+++|+.|++++|
T Consensus       533 ~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          533 KGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA-SVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred             cCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCH-hHhCCCCCCCEEECCCC
Confidence            34455555555555 333221122445556666666555 4442211 12234566666666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.13  E-value=5.3e-12  Score=113.56  Aligned_cols=13  Identities=15%  Similarity=0.220  Sum_probs=7.9

Q ss_pred             ccCCcCeeeccCC
Q 021374           82 RYRHVREINLEFA   94 (313)
Q Consensus        82 ~~~~l~~L~l~~~   94 (313)
                      .+++|+.|+++++
T Consensus        74 ~l~~L~~L~Ls~N   86 (562)
T 3a79_B           74 FLSELRVLRLSHN   86 (562)
T ss_dssp             TCTTCCEEECCSC
T ss_pred             cCCCccEEECCCC
Confidence            4566666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.13  E-value=2.1e-10  Score=96.61  Aligned_cols=185  Identities=16%  Similarity=0.181  Sum_probs=125.8

Q ss_pred             CCCCCcEEecCCCCCCC-h---HHHHHH---HhcCCCCcEEEecCCcc-------cCHHHHHHHHhcCCCCcEEeccCCc
Q 021374          112 SLQDLESLNLNGCQKIS-D---KGIEII---SSTCPELKVFSIYWNVR-------VTDIGIQHLVKNCKHIIDLNLSGCK  177 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~-~---~~~~~~---~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~  177 (313)
                      ....++.|.+..+. .+ .   ..+..+   ...+++|+.|.+.....       +....+..+...+|+|++|.++++.
T Consensus       105 ~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          105 KLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             TGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred             CchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence            34568888887643 33 1   233333   34678999999964311       1111355667788999999998863


Q ss_pred             ccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh-hCCCCCEEEeCCCCC--CCHH---HHH-Hh--hcCCCCCEE
Q 021374          178 NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-KCSSLRSLNLYALSG--FTDE---AYK-KI--SLLAHLKFL  248 (313)
Q Consensus       178 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~--~~~~---~~~-~l--~~~~~L~~L  248 (313)
                      .+..   ..+  ..++|++|++..| .+...++..+.. .+|+|+.|.++....  ..+.   .+. .+  ..+|+|++|
T Consensus       184 ~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L  257 (362)
T 2ra8_A          184 NLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL  257 (362)
T ss_dssp             TCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred             Ccee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence            3322   111  2689999999885 678877776653 689999999853111  0111   111 12  258999999


Q ss_pred             ecCCCCCCChHHHHHhh---CCCCCceeeccCCCCCChHHHHHHHH---hCCCccEeecCCcc
Q 021374          249 DLCGAQNLSDEGLACIA---KCKNLVSLNLTWCVRITDVGVMAIAE---GCSSLEFLSSGAEM  305 (313)
Q Consensus       249 ~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~  305 (313)
                      .+.+| .+++.+...+.   .+++|++|+|++| .+++.+...+..   .+++|+.|+++.|.
T Consensus       258 ~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          258 GIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             EEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             eCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            99998 67766555554   4789999999987 899998877764   47899999998875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.12  E-value=8.7e-13  Score=118.84  Aligned_cols=184  Identities=13%  Similarity=0.094  Sum_probs=125.2

Q ss_pred             cccCCcCeeeccCCccCchHH--HHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGI  158 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~--~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  158 (313)
                      ..+++|+.|+++++. ++...  ...     +..+++|+.|+++++. +......  ...+++|++|+++++ .+.....
T Consensus       344 ~~~~~L~~L~l~~n~-l~~~~~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~  413 (570)
T 2z63_A          344 VDLPSLEFLDLSRNG-LSFKGCCSQS-----DFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHS-NLKQMSE  413 (570)
T ss_dssp             CBCTTCCEEECCSSC-CBEEEEEEHH-----HHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTS-EEESCTT
T ss_pred             ccCCCCCEEeCcCCc-cCcccccccc-----ccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCC-ccccccc
Confidence            356778888887753 32211  111     2356999999999863 3222111  356899999999987 4433211


Q ss_pred             HHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHH
Q 021374          159 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKK  238 (313)
Q Consensus       159 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  238 (313)
                      ......+++|++|+++++. +... .......+++|+.|++++| .+.+..++..+..+++|+.|+++++ .+.......
T Consensus       414 ~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~  489 (570)
T 2z63_A          414 FSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA  489 (570)
T ss_dssp             SCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred             hhhhhcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhh
Confidence            1223568999999999974 3332 1222345899999999996 4432223334567899999999985 566555566


Q ss_pred             hhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          239 ISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       239 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      +..+++|++|++++| .++......+.++++|++|++++|+
T Consensus       490 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          490 FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            788999999999999 6665544557789999999999984

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.12  E-value=1e-12  Score=110.20  Aligned_cols=201  Identities=15%  Similarity=0.119  Sum_probs=98.5

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ++++.|+++++. +....     ...+..+++|+.|+++++ .++...... ...+++|++|+++++ .++..  ..  .
T Consensus        54 ~~l~~L~l~~n~-i~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l--~~--~  120 (332)
T 2ft3_A           54 PDTTLLDLQNND-ISELR-----KDDFKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HLVEI--PP--N  120 (332)
T ss_dssp             TTCCEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CCCSC--CS--S
T ss_pred             CCCeEEECCCCc-CCccC-----HhHhhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cCCcc--Cc--c
Confidence            566777776643 22211     111345567777777765 333221111 245677777777766 33311  10  1


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHH-HHHhh--------------------CCCCCE
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQ-KILIK--------------------CSSLRS  222 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~--------------------~~~L~~  222 (313)
                      ..++|++|+++++ .++.... .....+++|+.|+++++ .+...+.. ..+..                    .++|+.
T Consensus       121 ~~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~  197 (332)
T 2ft3_A          121 LPSSLVELRIHDN-RIRKVPK-GVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE  197 (332)
T ss_dssp             CCTTCCEEECCSS-CCCCCCS-GGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSC
T ss_pred             ccccCCEEECCCC-ccCccCH-hHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCE
Confidence            1256777777764 2332111 11234667777777663 33210000 00011                    134555


Q ss_pred             EEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecC
Q 021374          223 LNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSG  302 (313)
Q Consensus       223 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~  302 (313)
                      |+++++ .+.......+..+++|++|++++| .++......+..+++|++|++++| .++...  ..+..+++|+.|+++
T Consensus       198 L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVP--AGLPDLKLLQVVYLH  272 (332)
T ss_dssp             CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCC--TTGGGCTTCCEEECC
T ss_pred             EECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecC--hhhhcCccCCEEECC
Confidence            555552 333333334556667777777776 444433334556677777777766 444211  113356677777777


Q ss_pred             Ccc
Q 021374          303 AEM  305 (313)
Q Consensus       303 ~~~  305 (313)
                      +|.
T Consensus       273 ~N~  275 (332)
T 2ft3_A          273 TNN  275 (332)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.11  E-value=1.3e-12  Score=122.93  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=37.1

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHH-HHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI-EIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      .+++|+.|+++++. +...     ....+..+++|++|+++++ .+..... ......+++|++|+++++ .+.......
T Consensus        71 ~L~~L~~L~Ls~N~-l~~~-----~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~  142 (844)
T 3j0a_A           71 NLPNLRILDLGSSK-IYFL-----HPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHP  142 (844)
T ss_dssp             SCTTCCEEECTTCC-CCEE-----CTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCG
T ss_pred             CCCCCCEEECCCCc-Cccc-----CHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccch
Confidence            45566666666542 2111     1111344556666666554 2221110 011234555666666555 332221111


Q ss_pred             HHhcCCCCcEEeccCC
Q 021374          161 LVKNCKHIIDLNLSGC  176 (313)
Q Consensus       161 ~~~~~~~L~~L~l~~~  176 (313)
                      .+..+++|++|+++++
T Consensus       143 ~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             GGGTCSSCCEEEEESS
T ss_pred             hHhhCCCCCEEECCCC
Confidence            2234555666665553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.10  E-value=2.4e-12  Score=117.34  Aligned_cols=211  Identities=14%  Similarity=0.142  Sum_probs=130.9

Q ss_pred             cccCCcCeeeccCCccCchH------------HHHHHHHHhcC--CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 021374           81 PRYRHVREINLEFAQDIEDR------------HLELLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFS  146 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~------------~~~~l~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  146 (313)
                      ..+++|+.|+++++. ++..            .........+.  .+++|++|+++++...... . .....+++|++|+
T Consensus       203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~-p-~~l~~l~~L~~L~  279 (636)
T 4eco_A          203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-P-TFLKALPEMQLIN  279 (636)
T ss_dssp             GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC-C-TTTTTCSSCCEEE
T ss_pred             hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC-h-HHHhcCCCCCEEE
Confidence            357889999998864 4431            11111222244  6789999999886432211 1 2225678999999


Q ss_pred             ecCCcccCHHHHHHHHhc------CCCCcEEeccCCcccchHHHHH--HHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374          147 IYWNVRVTDIGIQHLVKN------CKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRCVKLTDGGLQKILIKCS  218 (313)
Q Consensus       147 l~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  218 (313)
                      ++++..++...++.....      +++|++|+++++ .++.  ++.  ....+++|+.|+++++ .+.. .++ .+..++
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N-~l~g-~ip-~~~~l~  353 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYN-QLEG-KLP-AFGSEI  353 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSC-CCEE-ECC-CCEEEE
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCC-cCcc-chh-hhCCCC
Confidence            998843776223322222      489999999986 4442  332  3445889999999884 4441 122 345678


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCC-CCEEecCCCCCCChHHHHHhhC--CCCCceeeccCCCCCChHHHHHHH-----
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAH-LKFLDLCGAQNLSDEGLACIAK--CKNLVSLNLTWCVRITDVGVMAIA-----  290 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~l~-----  290 (313)
                      +|+.|+++++ .+. .....+..+++ |++|++++| .++. ....+..  +++|++|++++| .++......+.     
T Consensus       354 ~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N-~l~~-lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          354 KLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHN-KLKY-IPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSS-CCSS-CCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSS
T ss_pred             CCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCC-cCcc-cchhhhhcccCccCEEECcCC-cCCCcchhhhcccccc
Confidence            8999999874 333 22334567788 999999998 4552 2222333  348999999988 66543222221     


Q ss_pred             -HhCCCccEeecCCcc
Q 021374          291 -EGCSSLEFLSSGAEM  305 (313)
Q Consensus       291 -~~~~~L~~L~l~~~~  305 (313)
                       ..+++|+.|++++|.
T Consensus       429 ~~~~~~L~~L~Ls~N~  444 (636)
T 4eco_A          429 PFKGINVSSINLSNNQ  444 (636)
T ss_dssp             CCCCCCEEEEECCSSC
T ss_pred             cccCCCCCEEECcCCc
Confidence             035689999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.10  E-value=3.8e-09  Score=80.53  Aligned_cols=123  Identities=13%  Similarity=0.136  Sum_probs=58.9

Q ss_pred             HHHHhcCCCCcEEEecCCcccCHHHHHHHHh---cCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCC
Q 021374          133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLT  206 (313)
Q Consensus       133 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~  206 (313)
                      ..+....++|++|+|+++..+++.++..+..   ..++|++|+++++ .+++.+...+..   ..++|++|++++ +.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~  106 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFIS  106 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCC
Confidence            3333445555666655543455554443322   2345555666554 355544433332   234555666655 3555


Q ss_pred             HHHHHHHHh---hCCCCCEEEe--CCCCCCCHHHHHHhh----cCCCCCEEecCCCCCCChH
Q 021374          207 DGGLQKILI---KCSSLRSLNL--YALSGFTDEAYKKIS----LLAHLKFLDLCGAQNLSDE  259 (313)
Q Consensus       207 ~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~  259 (313)
                      +.+...+..   ..++|++|++  ++ ..+.+.+...+.    ..++|++|++++| .+++.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~  166 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPR  166 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChH
Confidence            555443332   2345556665  33 345554433332    3455566665555 34433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.08  E-value=3.3e-13  Score=126.94  Aligned_cols=211  Identities=17%  Similarity=0.165  Sum_probs=91.4

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHH
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  160 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  160 (313)
                      ..+++|+.|+++++.....-     ....+..+++|+.|+|+++ .+...... ....+++|++|++++| .+.+.....
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i-----~~~~f~~L~~L~~L~Ls~N-~l~~~~p~-~~~~l~~L~~L~Ls~n-~l~~~~~~~  116 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTI-----DKEAFRNLPNLRILDLGSS-KIYFLHPD-AFQGLFHLFELRLYFC-GLSDAVLKD  116 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEE-----CTTTTSSCTTCCEEECTTC-CCCEECTT-SSCSCSSCCCEECTTC-CCSSCCSTT
T ss_pred             cccccCeEEeCCCCCCcccc-----CHHHhcCCCCCCEEECCCC-cCcccCHh-HccCCcccCEeeCcCC-CCCcccccC
Confidence            34566666666655221110     0111345566666666664 22222111 1244566666666665 333211111


Q ss_pred             -HHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCH---HHHHHHHhhCCCCCEEEeCCCCCCCHHHH
Q 021374          161 -LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTD---GGLQKILIKCSSLRSLNLYALSGFTDEAY  236 (313)
Q Consensus       161 -~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  236 (313)
                       ....+++|++|+++++. ++..........+++|+.|+++++ .+..   ..+..+ .. ++|+.|+++++ .+.....
T Consensus       117 ~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l-~~-~~L~~L~L~~n-~l~~~~~  191 (844)
T 3j0a_A          117 GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPL-QG-KTLSFFSLAAN-SLYSRVS  191 (844)
T ss_dssp             CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHH-HH-CSSCCCEECCS-BSCCCCC
T ss_pred             ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccc-cC-CccceEECCCC-ccccccc
Confidence             12345666666666642 222111112234566666666663 3221   112211 11 56666666653 2222111


Q ss_pred             HHhhcCC------CCCEEecCCCCCCChHHHHHhh---CCCCCceeeccCCC--------CCChHHHHHHHH-hCCCccE
Q 021374          237 KKISLLA------HLKFLDLCGAQNLSDEGLACIA---KCKNLVSLNLTWCV--------RITDVGVMAIAE-GCSSLEF  298 (313)
Q Consensus       237 ~~l~~~~------~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~--------~~~~~~~~~l~~-~~~~L~~  298 (313)
                      ..++.++      +|++|++++| .++......+.   ..++++.+.+..+.        .+.+.....+.. ..++|+.
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~  270 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH  270 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred             cchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence            1122222      2677777666 34333222222   23455666554210        111111111111 1367888


Q ss_pred             eecCCcc
Q 021374          299 LSSGAEM  305 (313)
Q Consensus       299 L~l~~~~  305 (313)
                      |++++|.
T Consensus       271 L~Ls~n~  277 (844)
T 3j0a_A          271 LDLSHGF  277 (844)
T ss_dssp             EECTTCC
T ss_pred             EECCCCc
Confidence            8888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.08  E-value=1.8e-12  Score=105.83  Aligned_cols=179  Identities=18%  Similarity=0.142  Sum_probs=117.4

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .++..... ....+++|++|+++++ .++..... ....+++|++|+++++ .++......+ ..+++
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~  101 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGAF-SGLSS  101 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTT-TTTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTTT-TTCTT
T ss_pred             CCccEEECCCC-cccccCHh-HhccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChhhh-cCCcc
Confidence            57999999986 44433221 2256899999999988 55432211 2356899999999986 3443222222 34799


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCChH---HHHHhhCCCC
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSDE---GLACIAKCKN  269 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~  269 (313)
                      |+.|+++++ .+..... ..+..+++|+.|+++++ .+... ....+..+++|++|++++| .++..   .+..+.+++.
T Consensus       102 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A          102 LQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             CCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred             ccEEECCCC-CccccCc-hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccc
Confidence            999999985 4433111 11467899999999985 44332 2456778999999999999 55543   3333444555


Q ss_pred             Cc-eeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          270 LV-SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       270 L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      |. +|++++| .++......+  ...+|+.|++++|.
T Consensus       178 l~l~L~ls~n-~l~~~~~~~~--~~~~L~~L~L~~n~  211 (276)
T 2z62_A          178 LNLSLDLSLN-PMNFIQPGAF--KEIRLKELALDTNQ  211 (276)
T ss_dssp             CCEEEECCSS-CCCEECTTSS--CSCCEEEEECCSSC
T ss_pred             cceeeecCCC-cccccCcccc--CCCcccEEECCCCc
Confidence            55 8999988 6654332211  23489999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.07  E-value=1.3e-11  Score=92.94  Aligned_cols=15  Identities=40%  Similarity=0.461  Sum_probs=7.2

Q ss_pred             hhcCCCCCEEecCCC
Q 021374          239 ISLLAHLKFLDLCGA  253 (313)
Q Consensus       239 l~~~~~L~~L~l~~~  253 (313)
                      +..+++|++|++++|
T Consensus       116 l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          116 LKKLECLKSLDLFNC  130 (168)
T ss_dssp             GSSCSCCCEEECCSS
T ss_pred             HhcCCCCCEEEeeCC
Confidence            334444555555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.07  E-value=1e-11  Score=93.39  Aligned_cols=132  Identities=23%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      ++|++|+++++ .+++..++.....+++|+.|+++++ .+...   ..+..+++|+.|+++++ .+.......+..+++|
T Consensus        24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred             ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence            45666666554 2331112222234567777777774 34432   23456778888888874 4443233344568999


Q ss_pred             CEEecCCCCCCChH-HHHHhhCCCCCceeeccCCCCCChHHH--HHHHHhCCCccEeecCCcc
Q 021374          246 KFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWCVRITDVGV--MAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       246 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++++| .+++. .+..+..+++|++|++++| .++....  ...+..+|+|+.|++++|.
T Consensus        98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            99999999 56553 3356778999999999998 5554432  3456689999999998875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=1.3e-11  Score=115.32  Aligned_cols=182  Identities=11%  Similarity=0.061  Sum_probs=119.7

Q ss_pred             cCCCCCCcEEecCCCCCCChH----------------HHHHHHh--cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEE
Q 021374          110 LGSLQDLESLNLNGCQKISDK----------------GIEIISS--TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDL  171 (313)
Q Consensus       110 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  171 (313)
                      +..+++|+.|+|+++ .+...                .++.-..  .+++|+.|+|++| .+... ++..+..+++|+.|
T Consensus       444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~-iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQ-LPDFLYDLPELQSL  520 (876)
T ss_dssp             GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCS-CCGGGGGCSSCCEE
T ss_pred             HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCcc-ChHHHhCCCCCCEE
Confidence            567889999999986 45541                1222223  7899999999988 33222 22334578999999


Q ss_pred             eccCCcccchHHHHH-HH------HhCCCCcEEecCCCCCCCHHHHHH--HHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          172 NLSGCKNLLDKSLQL-IA------DNYQELESLNLTRCVKLTDGGLQK--ILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       172 ~l~~~~~~~~~~l~~-l~------~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      +++++..++...++. +.      ..+++|+.|+++++ .+.  .++.  .+..+++|+.|+++++ .+. ... .++.+
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N-~l~-~lp-~~~~L  594 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHN-KVR-HLE-AFGTN  594 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTS-CCC-BCC-CCCTT
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCC-Ccc-cch-hhcCC
Confidence            999964255412222 22      23469999999994 555  3444  5688999999999985 454 222 67788


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCC-CceeeccCCCCCChHHHHHHHHhC--CCccEeecCCcc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKN-LVSLNLTWCVRITDVGVMAIAEGC--SSLEFLSSGAEM  305 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~--~~L~~L~l~~~~  305 (313)
                      ++|++|++++| .++ .....+.++++ |++|++++| .++..  ...+...  ++|+.|++++|.
T Consensus       595 ~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N-~L~~l--p~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          595 VKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHN-KLKYI--PNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             SEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSS-CCCSC--CSCCCTTCSSCEEEEECCSSC
T ss_pred             CcceEEECcCC-ccc-cchHHHhhccccCCEEECcCC-CCCcC--chhhhccccCCCCEEECcCCc
Confidence            99999999998 555 33334667788 999999988 55521  1111122  347777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.07  E-value=5.9e-11  Score=96.02  Aligned_cols=142  Identities=20%  Similarity=0.287  Sum_probs=86.5

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .+....  . ...+++|++|+++++ .+++...   ...+++|++|+++++ .++.  +..+..  ++
T Consensus        41 ~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~~--~~  107 (263)
T 1xeu_A           41 SGVQNFNGDNS-NIQSLA--G-MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIPS--AC  107 (263)
T ss_dssp             TTCSEEECTTS-CCCCCT--T-GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCCC--SS
T ss_pred             CcCcEEECcCC-Ccccch--H-HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCcccc--Cc
Confidence            78888888876 333322  1 256788888888877 5543221   456778888888875 3433  111111  67


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.+.  . .+..+++|+.|+++++ .+++.  ..+..+++|++|++++| .+++.  ..+..+++|++|
T Consensus       108 L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~L~~L~L~~N-~i~~~--~~l~~l~~L~~L  177 (263)
T 1xeu_A          108 LSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNN-KLKSI--VMLGFLSKLEVLDLHGN-EITNT--GGLTRLKKVNWI  177 (263)
T ss_dssp             CCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTS-CCCBC--GGGGGCTTCCEEECTTS-CCCBC--TTSTTCCCCCEE
T ss_pred             ccEEEccCC-ccCCC--h-hhcCcccccEEECCCC-cCCCC--hHHccCCCCCEEECCCC-cCcch--HHhccCCCCCEE
Confidence            777777774 44431  1 2456677777777763 44432  24566777777777777 45443  345567777777


Q ss_pred             eccCC
Q 021374          274 NLTWC  278 (313)
Q Consensus       274 ~l~~~  278 (313)
                      ++++|
T Consensus       178 ~l~~N  182 (263)
T 1xeu_A          178 DLTGQ  182 (263)
T ss_dssp             EEEEE
T ss_pred             eCCCC
Confidence            77766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.07  E-value=5.6e-13  Score=106.46  Aligned_cols=202  Identities=12%  Similarity=0.060  Sum_probs=128.8

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ++++.|+++++. ++..     ....+..+++|+.|+++++..++..... ....+++|++|+++++..++.... ..+.
T Consensus        31 ~~l~~L~l~~n~-l~~i-----~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f~  102 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTI-----PSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DALK  102 (239)
T ss_dssp             TTCCEEEEESCC-CSEE-----CTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSEE
T ss_pred             CcccEEEEeCCc-ceEE-----CHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHhC
Confidence            478999998753 3321     1112456799999999986324332211 225689999999997225543211 1234


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCc---EEecCCCCCCCHHHHHHHHhhCCCCC-EEEeCCCCCCCHHHHHHh
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELE---SLNLTRCVKLTDGGLQKILIKCSSLR-SLNLYALSGFTDEAYKKI  239 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l  239 (313)
                      .+++|++|+++++ .++.  ++. ...+++|+   .|+++++..+.... ...+..+++|+ .|+++++ .+.......+
T Consensus       103 ~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~  176 (239)
T 2xwt_C          103 ELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNN-GFTSVQGYAF  176 (239)
T ss_dssp             CCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSC-CCCEECTTTT
T ss_pred             CCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCC-CCcccCHhhc
Confidence            6789999999986 3433  222 23467777   99999852554311 11246788999 9999874 4443222223


Q ss_pred             hcCCCCCEEecCCCCCCChHHHHHhhCC-CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          240 SLLAHLKFLDLCGAQNLSDEGLACIAKC-KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .. ++|++|++++|..++......+.++ ++|++|+++++ .++.....    .+++|+.|++.++.
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK----GLEHLKELIARNTW  237 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT----TCTTCSEEECTTC-
T ss_pred             CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh----HhccCceeeccCcc
Confidence            33 7899999999854665434456778 99999999988 55543221    57899999998765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.06  E-value=1.1e-11  Score=99.59  Aligned_cols=156  Identities=17%  Similarity=0.189  Sum_probs=94.3

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      +.++.|+++++. +.....     ..+..+++|+.|+++++ .+..... .....+++|++|+++++ .++... ...+.
T Consensus        35 ~~l~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~  104 (251)
T 3m19_A           35 ADTEKLDLQSTG-LATLSD-----ATFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANN-QLASLP-LGVFD  104 (251)
T ss_dssp             TTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCC-TTTTT
T ss_pred             CCCCEEEccCCC-cCccCH-----hHhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCC-cccccC-hhHhc
Confidence            578888888753 322111     11356688888888875 3333221 12256788888888877 444321 12234


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      .+++|++|+++++ .++.... .....+++|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..++
T Consensus       105 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  179 (251)
T 3m19_A          105 HLTQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIP-AGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLG  179 (251)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred             ccCCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccC-HHHcCcCcCCCEEECCCC-cCCccCHHHHhCCC
Confidence            5788888888885 4443111 11234788888888884 554311 112456788888888874 44433334566778


Q ss_pred             CCCEEecCCCC
Q 021374          244 HLKFLDLCGAQ  254 (313)
Q Consensus       244 ~L~~L~l~~~~  254 (313)
                      +|++|++++|+
T Consensus       180 ~L~~L~l~~N~  190 (251)
T 3m19_A          180 KLQTITLFGNQ  190 (251)
T ss_dssp             TCCEEECCSCC
T ss_pred             CCCEEEeeCCc
Confidence            88888888884

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.06  E-value=5.7e-13  Score=106.41  Aligned_cols=181  Identities=14%  Similarity=0.102  Sum_probs=120.5

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .++..... ....+++|++|+++++..++.... ..+..+++|++|++++|..++..... ....+++
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSH-AFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPL  106 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTT-TTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTT-SEECCTT
T ss_pred             CcccEEEEeCC-cceEECHH-HccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCC
Confidence            47999999986 44433221 225689999999998842443211 12256899999999974455432211 1234789


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCC---EEEeCCCCCCCHHHHHHhhcCCCCC-EEecCCCCCCChHHHHHhhCCCC
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLR---SLNLYALSGFTDEAYKKISLLAHLK-FLDLCGAQNLSDEGLACIAKCKN  269 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~  269 (313)
                      |+.|+++++ .+..  ++. +..+++|+   .|+++++..+.......+..+++|+ +|++++| .++......+.. ++
T Consensus       107 L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~  180 (239)
T 2xwt_C          107 LKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TK  180 (239)
T ss_dssp             CCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CE
T ss_pred             CCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CC
Confidence            999999984 4543  222 46677887   9999985356544444567889999 9999998 565322222333 79


Q ss_pred             CceeeccCCCCCChHHHHHHHHhC-CCccEeecCCcc
Q 021374          270 LVSLNLTWCVRITDVGVMAIAEGC-SSLEFLSSGAEM  305 (313)
Q Consensus       270 L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~  305 (313)
                      |++|++++|..++..... .+..+ ++|+.|++++|.
T Consensus       181 L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             EEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCC
T ss_pred             CCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCc
Confidence            999999998546643322 23357 899999999874

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.06  E-value=1.4e-10  Score=68.66  Aligned_cols=48  Identities=19%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             ccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374           14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID   63 (313)
Q Consensus        14 ~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~   63 (313)
                      ...|. .+++|++.+||+||+.+|+++++.|||+|+.++ ..+.+|+.+|
T Consensus         6 ~~~~~-~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~-~~~~lW~~ld   53 (53)
T 1fs1_A            6 GVSWD-SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA-SDESLWQTLD   53 (53)
T ss_dssp             ---CC-SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH-TCGGGC----
T ss_pred             CCCHH-HCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CChHHHHhcC
Confidence            34563 344489999999999999999999999999874 6899999775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.05  E-value=1.6e-12  Score=118.52  Aligned_cols=166  Identities=16%  Similarity=0.141  Sum_probs=106.2

Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC  217 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  217 (313)
                      .+++|+.+++..+...... .......+++++.++++.+. +... .......+++|+.|+++++..... .....+..+
T Consensus       418 ~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l  493 (635)
T 4g8a_A          418 GLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTEL  493 (635)
T ss_dssp             TCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTC
T ss_pred             ccccccchhhhhccccccc-cccccccccccccccccccc-cccc-cccccccchhhhhhhhhhcccccc-cCchhhhhc
Confidence            3455566655544221111 11112345677777777642 2221 112223468899999988532211 112234677


Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC-CCc
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC-SSL  296 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L  296 (313)
                      ++|+.|+++++ .+.......+..+++|++|+|++| .++......+.++++|++|++++| .++......+. .+ ++|
T Consensus       494 ~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~~L  569 (635)
T 4g8a_A          494 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSL  569 (635)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTT-CCCTTC
T ss_pred             cccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHH-hhhCcC
Confidence            89999999985 566555566788999999999999 666544445778999999999998 66654433333 34 589


Q ss_pred             cEeecCCcccccccc
Q 021374          297 EFLSSGAEMNCCSCS  311 (313)
Q Consensus       297 ~~L~l~~~~~~~~~~  311 (313)
                      +.|++++|..-|.|+
T Consensus       570 ~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          570 AFLNLTQNDFACTCE  584 (635)
T ss_dssp             CEEECTTCCBCCSGG
T ss_pred             CEEEeeCCCCcccCC
Confidence            999999999989886

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.04  E-value=8.8e-12  Score=105.74  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=39.6

Q ss_pred             hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHh---hCCCCCceeeccCCCCCChHHHHHHHHh
Q 021374          216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACI---AKCKNLVSLNLTWCVRITDVGVMAIAEG  292 (313)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~l~~~  292 (313)
                      .+++|+.|+++++ .+.......+..+++|++|+|++| .++......+   ..+++|++|+|++| .++......+. .
T Consensus       110 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~  185 (361)
T 2xot_A          110 DLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-K  185 (361)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHH-H
T ss_pred             CCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhh-h
Confidence            3445555555442 333222233444555555555555 3332111112   33555666666555 44433322222 3


Q ss_pred             CCC--ccEeecCCccccccc
Q 021374          293 CSS--LEFLSSGAEMNCCSC  310 (313)
Q Consensus       293 ~~~--L~~L~l~~~~~~~~~  310 (313)
                      ++.  |+.|++++|.--|.|
T Consensus       186 l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          186 LPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             SCHHHHTTEECCSSCEECCH
T ss_pred             ccHhhcceEEecCCCccCCc
Confidence            443  355566655555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.00  E-value=2e-11  Score=96.01  Aligned_cols=132  Identities=17%  Similarity=0.128  Sum_probs=71.3

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      ++|+.|+++++ .+..... ..+..+++|++|+++++ .++...... ...+++|+.|++++ +.+... ....+..+++
T Consensus        32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~  105 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYG-NKITEL-PKSLFEGLFS  105 (220)
T ss_dssp             TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCS-SCCCCC-CTTTTTTCTT
T ss_pred             cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCC-CcCCcc-CHhHccCCCC
Confidence            57888888877 4443211 11234677788877774 333311111 22367777777777 344321 0112345666


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      |+.|+++++ .+.......+..+++|++|++++| .++......+..+++|++|++++|+
T Consensus       106 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          106 LQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            777777663 444333344556667777777666 4443332334556666777776663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.00  E-value=2.3e-11  Score=95.66  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      +.++.|+++++ .++.......+..+++|++|+++++ .++......+ ..+++|+.|+++++ .+.... ...+..+++
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~  106 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAF-EGASGVNEILLTSN-RLENVQ-HKMFKGLES  106 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCCCC-GGGGTTCSS
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHh-CCCCCCCEEECCCC-ccCccC-HhHhcCCcC
Confidence            46778888877 4443211122345777888888774 3433211112 33677777777773 443211 122456677


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      |+.|+++++ .+.......+..+++|++|++++| .++......+..+++|++|++++|+
T Consensus       107 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          107 LKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            777777763 444333344556677777777776 4544333445566777777777663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.00  E-value=3.5e-11  Score=95.27  Aligned_cols=132  Identities=18%  Similarity=0.152  Sum_probs=81.8

Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS  218 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  218 (313)
                      .++|+.|+++++ .++.... ..+..+++|++|+++++ .++.... .....+++|+.|+++++ .+... ....+..++
T Consensus        39 ~~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~  112 (229)
T 3e6j_A           39 PTNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLV  112 (229)
T ss_dssp             CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred             CCCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCC-cCCcc-ChhHhCcch
Confidence            378999999887 5543211 22345788899998885 3433111 12234788888888884 55431 112245678


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      +|+.|+++++ .+. .....+..+++|++|++++| .++......+.++++|++|++++|+
T Consensus       113 ~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          113 HLKELFMCCN-KLT-ELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCCEEECCSS-CCC-SCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             hhCeEeccCC-ccc-ccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            8888888874 444 22234567788888888887 5554333345667888888888773

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.97  E-value=5.7e-11  Score=92.63  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=86.7

Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS  218 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  218 (313)
                      .++|++|+++++ .++... ......+++|++|+++++ .++... ......+++|++|+++++ .+... ....+..++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~  100 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLT  100 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred             CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCcc
Confidence            468999999987 554321 122346789999999885 444321 112234789999999884 44421 112246778


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      +|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|++|++++|+
T Consensus       101 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          101 QLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence            8999999874 454333334567889999999888 5554333335678889999998873

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.96  E-value=3e-10  Score=91.80  Aligned_cols=144  Identities=22%  Similarity=0.266  Sum_probs=86.0

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++. ++...  .     +..+++|+.|+++++ .+.....   ...+++|+.|+++++ .++..  ..+
T Consensus        39 ~l~~L~~L~l~~n~-i~~l~--~-----l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l--~~~  103 (263)
T 1xeu_A           39 ELSGVQNFNGDNSN-IQSLA--G-----MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNL--NGI  103 (263)
T ss_dssp             HHTTCSEEECTTSC-CCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCC--TTC
T ss_pred             hcCcCcEEECcCCC-cccch--H-----HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCc--Ccc
Confidence            45777788877653 33211  1     345677888888775 3333221   356778888888777 44331  111


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                       .. ++|+.|+++++ .+++.  .. ...+++|+.|++++ +.+.+.  . .+..+++|+.|+++++ .+.+.  ..+..
T Consensus       104 -~~-~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~-N~i~~~--~-~l~~l~~L~~L~L~~N-~i~~~--~~l~~  170 (263)
T 1xeu_A          104 -PS-ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRN-NKLKSI--V-MLGFLSKLEVLDLHGN-EITNT--GGLTR  170 (263)
T ss_dssp             -CC-SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTT-SCCCBC--G-GGGGCTTCCEEECTTS-CCCBC--TTSTT
T ss_pred             -cc-CcccEEEccCC-ccCCC--hh-hcCcccccEEECCC-CcCCCC--h-HHccCCCCCEEECCCC-cCcch--HHhcc
Confidence             11 67888888775 34432  22 23467788888877 355542  2 2466778888888774 44443  44567


Q ss_pred             CCCCCEEecCCC
Q 021374          242 LAHLKFLDLCGA  253 (313)
Q Consensus       242 ~~~L~~L~l~~~  253 (313)
                      +++|++|++++|
T Consensus       171 l~~L~~L~l~~N  182 (263)
T 1xeu_A          171 LKKVNWIDLTGQ  182 (263)
T ss_dssp             CCCCCEEEEEEE
T ss_pred             CCCCCEEeCCCC
Confidence            778888888777

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.92  E-value=2.4e-11  Score=108.83  Aligned_cols=124  Identities=21%  Similarity=0.229  Sum_probs=85.4

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      ..|+.|+++++ .++.  ++. ...+++|+.|+++++ .+.  .++..+..+++|+.|+++++ .++..  ..++.+++|
T Consensus       441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~l--p~l~~l~~L  510 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALENV--DGVANLPRL  510 (567)
T ss_dssp             TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCCC--GGGTTCSSC
T ss_pred             cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCCC--cccCCCCCC
Confidence            36888888885 4544  333 345788999999884 555  23334577888999999884 45432  267788899


Q ss_pred             CEEecCCCCCCChHH-HHHhhCCCCCceeeccCCCCCChH--HHHHHHHhCCCccEeec
Q 021374          246 KFLDLCGAQNLSDEG-LACIAKCKNLVSLNLTWCVRITDV--GVMAIAEGCSSLEFLSS  301 (313)
Q Consensus       246 ~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l  301 (313)
                      ++|++++| .++... ...+.++++|++|++++| .++..  ....+...+|+|+.|++
T Consensus       511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            99999888 565543 455778889999999888 45433  23445556888888864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.89  E-value=5.8e-11  Score=92.58  Aligned_cols=149  Identities=16%  Similarity=0.134  Sum_probs=98.4

Q ss_pred             CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCC
Q 021374          113 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  192 (313)
Q Consensus       113 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~  192 (313)
                      .++|++|+++++ .++.... .....+++|++|+++++ .++.. .......+++|++|+++++ .++.... .....++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~  100 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDKLT  100 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred             CCCCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCC-cCCccCH-hHhcCcc
Confidence            468999999986 4433221 22356899999999987 55432 1122346789999999986 4443211 1223578


Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCce
Q 021374          193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVS  272 (313)
Q Consensus       193 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  272 (313)
                      +|+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++|+..        +.+++|++
T Consensus       101 ~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~  169 (208)
T 2o6s_A          101 QLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRY  169 (208)
T ss_dssp             TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHH
T ss_pred             CCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHH
Confidence            9999999984 554311 123467899999999884 454433344667899999999998422        35677888


Q ss_pred             eeccCC
Q 021374          273 LNLTWC  278 (313)
Q Consensus       273 L~l~~~  278 (313)
                      |++..+
T Consensus       170 L~~~~n  175 (208)
T 2o6s_A          170 LSEWIN  175 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.86  E-value=4.8e-10  Score=84.86  Aligned_cols=129  Identities=12%  Similarity=0.112  Sum_probs=70.1

Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS  218 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  218 (313)
                      +++|+.|+++++ .++.  +..+....++|+.|+++++ .++..  ..+ ..+++|+.|+++++ .+... ...++..++
T Consensus        18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~l-~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~   88 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKL--DGF-PLLRRLKTLLVNNN-RICRI-GEGLDQALP   88 (176)
T ss_dssp             TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CCC-CCCSSCCEEECCSS-CCCEE-CSCHHHHCT
T ss_pred             cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcc--ccc-ccCCCCCEEECCCC-ccccc-CcchhhcCC
Confidence            567888888777 4442  2233333457777777775 34432  112 23567777777773 44421 112235667


Q ss_pred             CCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCChHH---HHHhhCCCCCceeeccCC
Q 021374          219 SLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSDEG---LACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~  278 (313)
                      +|+.|+++++ .+... .+..+..+++|++|++++|+ ++...   ...+..+++|+.|+++++
T Consensus        89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence            7777777664 33321 12345566677777777663 33211   113455677777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.80  E-value=2.5e-10  Score=89.73  Aligned_cols=134  Identities=23%  Similarity=0.234  Sum_probs=70.6

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ..++.|+++++ .++..........+++|++|+++++ .++.... ..+..+++|++|+++++ .++..... ....+++
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~  106 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSN-RLENVQHK-MFKGLES  106 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCCCCGG-GGTTCSS
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCC-ccCccCHh-HhcCCcC
Confidence            45667777764 3332211112255677777777766 4433211 11235677777777764 33321111 1234677


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCC
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN  255 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  255 (313)
                      |+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++|+.
T Consensus       107 L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          107 LKTLMLRSN-RITCVG-NDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCEEECTTS-CCCCBC-TTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCEEECCCC-cCCeEC-HhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence            777777763 443211 112345677777777763 44433334455667777777777743

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.77  E-value=1.2e-09  Score=84.03  Aligned_cols=107  Identities=17%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      ++|++|++++. .++.  ++.....+++|+.|++++ +.+.... ...+.++++|+.|+++++ .+.......+..+++|
T Consensus        31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~-N~i~~i~-~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSN-NRISTLS-NQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred             CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCC-CcCCEeC-HhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCC
Confidence            46777777764 3332  112223466777777776 3443211 112345566666666662 3443333345556666


Q ss_pred             CEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      ++|++++| .++......+..+++|++|++++|+
T Consensus       105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          105 RLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence            66666666 4443222234456666666666653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.76  E-value=5.3e-09  Score=94.46  Aligned_cols=75  Identities=21%  Similarity=0.115  Sum_probs=37.6

Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCcc
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE  297 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  297 (313)
                      ++|+.|+++++ .++...    ..+++|++|++++| .++.-.  .  .+++|++|++++| .++..  ...+..+++|+
T Consensus       221 ~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp--~--~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~L~  287 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLP--M--LPSGLLSLSVYRN-QLTRL--PESLIHLSSET  287 (622)
T ss_dssp             TTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCC--C--CCTTCCEEECCSS-CCCSC--CGGGGGSCTTC
T ss_pred             CCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCC--c--ccccCcEEeCCCC-CCCcC--CHHHhhccccC
Confidence            55666666553 232210    23456666666666 343211  0  3456666666666 44422  11233566666


Q ss_pred             EeecCCcc
Q 021374          298 FLSSGAEM  305 (313)
Q Consensus       298 ~L~l~~~~  305 (313)
                      .|++++|.
T Consensus       288 ~L~L~~N~  295 (622)
T 3g06_A          288 TVNLEGNP  295 (622)
T ss_dssp             EEECCSCC
T ss_pred             EEEecCCC
Confidence            66666653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.75  E-value=5.7e-10  Score=87.68  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=72.1

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .+...... ....+++|+.|+|+++ .++..... .+..+++|++|+++++ .++... ......+++
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~  105 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYGN-KITELP-KSLFEGLFS  105 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred             cCCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCCC-cCCccC-HhHccCCCC
Confidence            46777777764 33322111 1244667777777766 44332111 1245677777777764 333211 111234677


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD  258 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  258 (313)
                      |+.|+++++ .+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++|+...+
T Consensus       106 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          106 LQLLLLNAN-KINCLR-VDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCEEECCCC-CCCEeC-HHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            777777773 443311 112355677777777763 34333333455667777777777754333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.74  E-value=5.3e-10  Score=85.91  Aligned_cols=109  Identities=24%  Similarity=0.168  Sum_probs=68.1

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      ++|++|+++++ .++..........+++|+.|++++ +.+... ....+..+++|+.|++++ ..+.......+..+++|
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L  104 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTC
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCC-CCCCCc-CHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCC
Confidence            47888888875 343321111224578888888888 355431 112345677888888887 35554434445667888


Q ss_pred             CEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      ++|++++| .++......+..+++|++|++++|+
T Consensus       105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            88888887 5554433445667888888888773

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.72  E-value=8.9e-10  Score=100.32  Aligned_cols=157  Identities=17%  Similarity=0.090  Sum_probs=103.3

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      +++++|+|+++ .++.... ..+..+++|++|+++++ .++...... ...+++|++|+++++ .+.... ...+.++++
T Consensus        52 ~~~~~LdLs~N-~i~~l~~-~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L~~  125 (635)
T 4g8a_A           52 FSTKNLDLSFN-PLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PIQSLA-LGAFSGLSS  125 (635)
T ss_dssp             TTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CCCEEC-GGGGTTCTT
T ss_pred             cCCCEEEeeCC-CCCCCCH-HHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCC-cCCCCC-HHHhcCCCC
Confidence            47999999988 6654221 12356899999999996 444321112 235899999999994 555421 123578899


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChH-HHHHhhCCCCCceeeccCCCCCCh---HHHHHHHHhCCC
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWCVRITD---VGVMAIAEGCSS  295 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~  295 (313)
                      |++|+++++ .+.......++.+++|++|++++| .++.. ....+..+++|++|++++| .++.   ..+..+......
T Consensus       126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~  202 (635)
T 4g8a_A          126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLL  202 (635)
T ss_dssp             CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTC
T ss_pred             CCEEECCCC-cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhh
Confidence            999999985 454433334678899999999998 44432 2234667899999999998 5543   334444432234


Q ss_pred             ccEeecCCcc
Q 021374          296 LEFLSSGAEM  305 (313)
Q Consensus       296 L~~L~l~~~~  305 (313)
                      +..++++.+.
T Consensus       203 ~~~~~ls~n~  212 (635)
T 4g8a_A          203 NLSLDLSLNP  212 (635)
T ss_dssp             CCEEECTTCC
T ss_pred             hhhhhcccCc
Confidence            4566666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.72  E-value=2.8e-09  Score=80.62  Aligned_cols=131  Identities=18%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  191 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~  191 (313)
                      .+.+|+.|+++++ .++..  ..+....++|+.|+++++ .++..   .....+++|++|+++++ .++... ..+...+
T Consensus        17 ~~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l   87 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIG-EGLDQAL   87 (176)
T ss_dssp             CTTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHC
T ss_pred             CcCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccccC-cchhhcC
Confidence            4456666666664 33321  223233446666666666 44432   11234566666666664 333211 1122346


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH---HHHHHhhcCCCCCEEecCCC
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD---EAYKKISLLAHLKFLDLCGA  253 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~  253 (313)
                      ++|+.|+++++ .+........+..+++|+.|+++++ .+..   .....+..+++|++|+++++
T Consensus        88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            66666666663 4432111012345666666666653 2221   11123456666666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.69  E-value=4e-10  Score=100.92  Aligned_cols=178  Identities=17%  Similarity=0.160  Sum_probs=113.5

Q ss_pred             CCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCccc-----------CHHHHHHHHhcCCCCcEEe-ccCCccc
Q 021374          112 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRV-----------TDIGIQHLVKNCKHIIDLN-LSGCKNL  179 (313)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~~~~~L~~L~-l~~~~~~  179 (313)
                      ..++|+.|+|+++ .+  ..++.-.+.+++|+.|++.++..+           ...........+++|+.|+ ++. ..+
T Consensus       347 ~~~~L~~L~Ls~n-~L--~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~  422 (567)
T 1dce_A          347 TDEQLFRCELSVE-KS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYL  422 (567)
T ss_dssp             TTTTSSSCCCCHH-HH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHH
T ss_pred             cCccceeccCChh-hH--HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-ccc
Confidence            3466777776653 22  123333356677777776543100           0011223334566777777 332 111


Q ss_pred             ch--------HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecC
Q 021374          180 LD--------KSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLC  251 (313)
Q Consensus       180 ~~--------~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  251 (313)
                      .+        ..+..+.  ...|+.|+++++ .++.  ++. +..+++|+.|+++++ .++ ..+..++.+++|++|+++
T Consensus       423 ~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          423 DDLRSKFLLENSVLKME--YADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQAS  494 (567)
T ss_dssp             HHHHHHHHHHHHHHHHH--HTTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECC
T ss_pred             chhhhhhhhcccccccC--ccCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECC
Confidence            11        1222222  247999999994 6654  344 678899999999984 555 334567899999999999


Q ss_pred             CCCCCChHHHHHhhCCCCCceeeccCCCCCChHH-HHHHHHhCCCccEeecCCccc
Q 021374          252 GAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVG-VMAIAEGCSSLEFLSSGAEMN  306 (313)
Q Consensus       252 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~  306 (313)
                      +| .++.  ++.+.++++|++|++++| .++... ... +..+++|+.|++++|.-
T Consensus       495 ~N-~l~~--lp~l~~l~~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          495 DN-ALEN--VDGVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SS-CCCC--CGGGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred             CC-CCCC--CcccCCCCCCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence            99 5665  236888999999999998 776553 333 34799999999999863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.69  E-value=8.7e-10  Score=85.15  Aligned_cols=105  Identities=21%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK  216 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  216 (313)
                      ..+++|++|+++++ .++.  +. ....+++|+.|+++++ .++.  ++.....+++|+.|+++++ .+..  +.. +..
T Consensus        45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~-~~~  113 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSG-IEK  113 (198)
T ss_dssp             HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH-HHH
T ss_pred             hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCc-ccc
Confidence            55677777777766 3333  11 2234566777777664 2332  2222223455666666663 3333  221 344


Q ss_pred             CCCCCEEEeCCCCCCCH-HHHHHhhcCCCCCEEecCCC
Q 021374          217 CSSLRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGA  253 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~  253 (313)
                      +++|+.|+++++ .+.. .....+..+++|++|++++|
T Consensus       114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence            555555555553 2322 12234445555555555555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.68  E-value=1.8e-09  Score=85.36  Aligned_cols=132  Identities=17%  Similarity=0.136  Sum_probs=82.8

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++|+.|+++++ .+..... .....+++|+.|+|+++ .+.... ...+..+++|+.|+++++ .++... ......+++
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~  113 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVH  113 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred             CCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcchh
Confidence            67888888885 3333211 12256788889988887 443221 122345788888888885 444321 112234788


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCC
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN  255 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  255 (313)
                      |+.|++++ +.+..  +...+..+++|+.|+++++ .+.......+..+++|++|++++|+.
T Consensus       114 L~~L~Ls~-N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          114 LKELFMCC-NKLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCEEECCS-SCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             hCeEeccC-Ccccc--cCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            88999888 45552  3233467788899988874 45433334466788888998888853

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.65  E-value=6e-09  Score=93.04  Aligned_cols=167  Identities=14%  Similarity=0.068  Sum_probs=87.8

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      +++|+.|+++++. ++.-.         ..+++|+.|+++++ .++.  +..+   ..+|++|+++++ .++.  +..  
T Consensus        79 ~~~L~~L~Ls~N~-l~~ip---------~~l~~L~~L~Ls~N-~l~~--ip~l---~~~L~~L~Ls~N-~l~~--lp~--  137 (571)
T 3cvr_A           79 PPQITVLEITQNA-LISLP---------ELPASLEYLDACDN-RLST--LPEL---PASLKHLDVDNN-QLTM--LPE--  137 (571)
T ss_dssp             CTTCSEEECCSSC-CSCCC---------CCCTTCCEEECCSS-CCSC--CCCC---CTTCCEEECCSS-CCSC--CCC--
T ss_pred             cCCCCEEECcCCC-Ccccc---------cccCCCCEEEccCC-CCCC--cchh---hcCCCEEECCCC-cCCC--CCC--
Confidence            3567777776643 32110         23467777777765 3332  1111   127777777766 4433  111  


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc-
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL-  241 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-  241 (313)
                       .+++|+.|+++++ .++.  ++.   .+++|+.|+++++ .++.  ++. +.  ++|+.|+++++ .++... . +.. 
T Consensus       138 -~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~L~~--lp~-l~--~~L~~L~Ls~N-~L~~lp-~-~~~~  201 (571)
T 3cvr_A          138 -LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNN-QLTF--LPE-LP--ESLEALDVSTN-LLESLP-A-VPVR  201 (571)
T ss_dssp             -CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CCC-CC--TTCCEEECCSS-CCSSCC-C-CC--
T ss_pred             -cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCC-CCCC--cch-hh--CCCCEEECcCC-CCCchh-h-HHHh
Confidence             4567777777774 3432  111   3567777777773 4443  222 11  67777777764 333110 1 111 


Q ss_pred             ----CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHH
Q 021374          242 ----LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAI  289 (313)
Q Consensus       242 ----~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  289 (313)
                          .+.|++|++++| .++. ....+.++++|++|++++| .++......+
T Consensus       202 L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N-~l~~~~p~~l  250 (571)
T 3cvr_A          202 NHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDN-PLSSRIRESL  250 (571)
T ss_dssp             ------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSS-SCCHHHHHHH
T ss_pred             hhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCC-cCCCcCHHHH
Confidence                122377777777 4543 1223455777888888777 6666554444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.64  E-value=1.6e-09  Score=91.87  Aligned_cols=111  Identities=20%  Similarity=0.148  Sum_probs=74.7

Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN  269 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  269 (313)
                      .+++|+.|++++ +.+.... ...+..+++|+.|+++++ .+.......+..+++|++|+|++| .++......+.++++
T Consensus        62 ~l~~L~~L~L~~-N~i~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~  137 (361)
T 2xot_A           62 RLTNLHSLLLSH-NHLNFIS-SEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQ  137 (361)
T ss_dssp             CCTTCCEEECCS-SCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             cccccCEEECCC-CcCCccC-hhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCccc
Confidence            356777777776 3444311 112456788888888873 455443445678899999999999 666544455778999


Q ss_pred             CceeeccCCCCCChHHHHHH--HHhCCCccEeecCCcc
Q 021374          270 LVSLNLTWCVRITDVGVMAI--AEGCSSLEFLSSGAEM  305 (313)
Q Consensus       270 L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~  305 (313)
                      |++|+|++| .++......+  ...+++|+.|+|++|.
T Consensus       138 L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          138 LQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            999999998 6665332222  1358999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.63  E-value=2.2e-09  Score=81.25  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=69.7

Q ss_pred             CCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCC
Q 021374          165 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAH  244 (313)
Q Consensus       165 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  244 (313)
                      .++|++|+++++ .++... ......+++|+.|+++++ .+... ....+..+++|+.|+++++ .++......+..+++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCC-CccccCHHHhhCCcc
Confidence            368899999885 344311 112234788999999884 55431 1122456788888888874 454333334567788


Q ss_pred             CCEEecCCCCCCChHHHHHhhCCCCCceeeccCCC
Q 021374          245 LKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCV  279 (313)
Q Consensus       245 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  279 (313)
                      |++|++++| .++......+.++++|++|++++|+
T Consensus       102 L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          102 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            888888888 5554333335667888888888883

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.59  E-value=5.7e-08  Score=87.75  Aligned_cols=125  Identities=17%  Similarity=0.137  Sum_probs=79.5

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      ++|+.|+++++ .++.  +   ....++|+.|.++++ .++.     +...+++|+.|+++++ .+..  +.   ..+++
T Consensus       181 ~~L~~L~Ls~N-~l~~--l---~~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N-~L~~--lp---~~l~~  242 (622)
T 3g06_A          181 SGLQELSVSDN-QLAS--L---PTLPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGN-RLTS--LP---VLPSE  242 (622)
T ss_dssp             TTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSC--CC---CCCTT
T ss_pred             CCCcEEECCCC-CCCC--C---CCccchhhEEECcCC-cccc-----cCCCCCCCCEEEccCC-ccCc--CC---CCCCc
Confidence            55566666555 3332  1   112356666666664 2332     1123478999999884 5553  22   56789


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIA  290 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  290 (313)
                      |+.|+++++ .++....    .+++|++|++++| .++. ....+.++++|+.|++++| .++......+.
T Consensus       243 L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N-~L~~-lp~~l~~l~~L~~L~L~~N-~l~~~~~~~l~  305 (622)
T 3g06_A          243 LKELMVSGN-RLTSLPM----LPSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGN-PLSERTLQALR  305 (622)
T ss_dssp             CCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCCS-CCGGGGGSCTTCEEECCSC-CCCHHHHHHHH
T ss_pred             CcEEECCCC-CCCcCCc----ccccCcEEeCCCC-CCCc-CCHHHhhccccCEEEecCC-CCCCcCHHHHH
Confidence            999999985 4442111    5789999999999 5663 2345778999999999999 77776555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.58  E-value=7.4e-11  Score=99.62  Aligned_cols=160  Identities=14%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIK  216 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  216 (313)
                      ..+++|++|+++++ .+....-.. .....++..|++.++..+.......+......++.|++++ +.+..  +..-...
T Consensus       101 ~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~--i~~~~f~  175 (350)
T 4ay9_X          101 QNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQE--IHNSAFN  175 (350)
T ss_dssp             CCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCE--ECTTSST
T ss_pred             hhcccccccccccc-ccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccC--CChhhcc
Confidence            34566666666655 322110000 0122345555554433332211111111123577777777 34442  1111123


Q ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374          217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL  296 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  296 (313)
                      ..+|+.|.+.++..+.......+..+++|++|++++| .++.-..   ..+.+|+.|.+.++..++...  . ...+++|
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~---~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L  248 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS---YGLENLKKLRARSTYNLKKLP--T-LEKLVAL  248 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS---SSCTTCCEEECTTCTTCCCCC--C-TTTCCSC
T ss_pred             ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh---hhhccchHhhhccCCCcCcCC--C-chhCcCh
Confidence            3567778777655554433344567788888998888 5543211   225566666665554443222  1 3467889


Q ss_pred             cEeecCCccccc
Q 021374          297 EFLSSGAEMNCC  308 (313)
Q Consensus       297 ~~L~l~~~~~~~  308 (313)
                      +.+++.++..||
T Consensus       249 ~~l~l~~~~~c~  260 (350)
T 4ay9_X          249 MEASLTYPSHCC  260 (350)
T ss_dssp             CEEECSCHHHHH
T ss_pred             hhCcCCCCcccc
Confidence            999998777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.58  E-value=3.4e-09  Score=81.83  Aligned_cols=104  Identities=18%  Similarity=0.206  Sum_probs=47.5

Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      .+++|++|+++++ .++.  ++.+ ..+++|+.|+++++ .+..  +......+++|+.|+++++ .+..  +..+..++
T Consensus        46 ~l~~L~~L~ls~n-~l~~--l~~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~~l~  115 (198)
T 1ds9_A           46 TLKACKHLALSTN-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSGIEKLV  115 (198)
T ss_dssp             HTTTCSEEECSEE-EESC--CCCH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHHHHHH
T ss_pred             cCCCCCEEECCCC-CCcc--cccc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCccccCC
Confidence            4555566655553 2322  1112 22455566655553 2221  2222333455555555553 3332  12344455


Q ss_pred             CCCEEecCCCCCCChH-HHHHhhCCCCCceeeccCC
Q 021374          244 HLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~  278 (313)
                      +|++|++++| .+++. .+..+.++++|++|++++|
T Consensus       116 ~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence            5556666555 33332 2234455555666665555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.56  E-value=2.3e-06  Score=64.95  Aligned_cols=120  Identities=13%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             HHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhC---CCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCC
Q 021374          157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY---QELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSG  230 (313)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~  230 (313)
                      .+..+...-+.|++|++++...+++.+...+...+   ..|+.|+|++ +.+.+.+...+   +..-+.|++|++++ ..
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~-N~  109 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVES-NF  109 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCS-SB
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCC-Cc
Confidence            35555555667777777664356666665555433   4677777777 36666554333   33445677777766 45


Q ss_pred             CCHHHHHHhh----cCCCCCEEecCCCC--CCChHHHHHh----hCCCCCceeeccCC
Q 021374          231 FTDEAYKKIS----LLAHLKFLDLCGAQ--NLSDEGLACI----AKCKNLVSLNLTWC  278 (313)
Q Consensus       231 ~~~~~~~~l~----~~~~L~~L~l~~~~--~~~~~~~~~l----~~~~~L~~L~l~~~  278 (313)
                      +.+.+...+.    .-+.|++|+|+++.  .+.+.+...+    ...++|+.|+++++
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            6666655543    33456666666442  3455443332    23566666666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.54  E-value=2.9e-08  Score=86.59  Aligned_cols=73  Identities=22%  Similarity=0.120  Sum_probs=34.5

Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCcc
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLE  297 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  297 (313)
                      ++|+.|+++++ .+..  +..++.+++|++|++++| .++.-  .  ...++|++|++++| .++.     +....++|+
T Consensus       215 ~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~l~~N-~l~~l--~--~~~~~L~~L~l~~N-~l~~-----l~~~~~~L~  280 (454)
T 1jl5_A          215 LSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNN-LLKTL--P--DLPPSLEALNVRDN-YLTD-----LPELPQSLT  280 (454)
T ss_dssp             TTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSS-CCSSC--C--SCCTTCCEEECCSS-CCSC-----CCCCCTTCC
T ss_pred             CcccEEECcCC-cCCc--ccccCCCCCCCEEECCCC-cCCcc--c--ccccccCEEECCCC-cccc-----cCcccCcCC
Confidence            35555555553 2221  112445566666666665 33320  0  11356666666665 3332     111235666


Q ss_pred             EeecCCc
Q 021374          298 FLSSGAE  304 (313)
Q Consensus       298 ~L~l~~~  304 (313)
                      .|++++|
T Consensus       281 ~L~ls~N  287 (454)
T 1jl5_A          281 FLDVSEN  287 (454)
T ss_dssp             EEECCSS
T ss_pred             EEECcCC
Confidence            6666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.52  E-value=1.1e-07  Score=83.01  Aligned_cols=73  Identities=19%  Similarity=0.122  Sum_probs=32.9

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      ++|+.|+++++ .+..  +.. +..+++|+.|+++++ .+...  .  ...++|++|++++| .++.-  .  ...++|+
T Consensus       215 ~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~l~~N-~l~~l--~--~~~~~L~~L~l~~N-~l~~l--~--~~~~~L~  280 (454)
T 1jl5_A          215 LSLESIVAGNN-ILEE--LPE-LQNLPFLTTIYADNN-LLKTL--P--DLPPSLEALNVRDN-YLTDL--P--ELPQSLT  280 (454)
T ss_dssp             TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSS-CCSSC--C--SCCTTCCEEECCSS-CCSCC--C--CCCTTCC
T ss_pred             CcccEEECcCC-cCCc--ccc-cCCCCCCCEEECCCC-cCCcc--c--ccccccCEEECCCC-ccccc--C--cccCcCC
Confidence            34555555553 2221  111 345566666666653 22210  0  12356666666665 33320  0  0135566


Q ss_pred             eeeccCC
Q 021374          272 SLNLTWC  278 (313)
Q Consensus       272 ~L~l~~~  278 (313)
                      +|++++|
T Consensus       281 ~L~ls~N  287 (454)
T 1jl5_A          281 FLDVSEN  287 (454)
T ss_dssp             EEECCSS
T ss_pred             EEECcCC
Confidence            6666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=1.3e-09  Score=91.12  Aligned_cols=60  Identities=17%  Similarity=0.105  Sum_probs=26.0

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCC-EEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLK-FLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      .+|++|+.|.+...  +......++..+++|+ .+.+.+  .++.-+...+.+|++|+.|++.++
T Consensus       247 ~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence            44555555555441  2222223344455555 555544  232222223444555555555433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=3.1e-08  Score=82.72  Aligned_cols=200  Identities=17%  Similarity=0.220  Sum_probs=119.9

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCC--------hHH-----------HHHHHhc----
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKIS--------DKG-----------IEIISST----  138 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~--------~~~-----------~~~~~~~----  138 (313)
                      ...+++.|.+.+.  +....+..+..    .+++|+.|+|+++. +.        ...           ....+..    
T Consensus        23 ~~~~l~~L~l~g~--i~~~~~~~l~~----~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~   95 (329)
T 3sb4_A           23 EANSITHLTLTGK--LNAEDFRHLRD----EFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHHCSEEEEEEE--ECHHHHHHHHH----SCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETT
T ss_pred             hhCceeEEEEecc--ccHHHHHHHHH----hhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccc
Confidence            3567899999874  55555665533    26899999998753 22        000           0112245    


Q ss_pred             ----CCCCcEEEecCC-cccCHHHHHHHHhcCCCCcEEeccCCc--ccchHHHHHHHHhCCCC-----------------
Q 021374          139 ----CPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCK--NLLDKSLQLIADNYQEL-----------------  194 (313)
Q Consensus       139 ----~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L-----------------  194 (313)
                          |++|++|.++.. ..+.+..    +..|++|+.|.+....  .+.+..+    ..+.++                 
T Consensus        96 ~~~g~~~L~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n~i~~i~~~aF----~~~~~l~~l~~~~~~~~~~~~~i  167 (329)
T 3sb4_A           96 VTKGKQTLEKVILSEKIKNIEDAA----FKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFIPLGSSDAYRFKNRW  167 (329)
T ss_dssp             EEEECTTCCC-CBCTTCCEECTTT----TTTCTTCCEEEBCCSSCCEECTTSS----CTTTCEEEECTTCTHHHHTSTTT
T ss_pred             cccccCCCcEEECCccccchhHHH----hhcCcccceEEcCCCCccccchhhh----cCCCceEEecCcchhhhhccccc
Confidence                889999998752 1233222    3568999999987642  1111111    012222                 


Q ss_pred             -------------------------------------cEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHH
Q 021374          195 -------------------------------------ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYK  237 (313)
Q Consensus       195 -------------------------------------~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  237 (313)
                                                           +.+.+.+  .+....+..+...+++|+.|++.++ .+......
T Consensus       168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~  244 (329)
T 3sb4_A          168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF  244 (329)
T ss_dssp             TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT
T ss_pred             cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHh
Confidence                                                 2233322  2333444555556899999999873 35444445


Q ss_pred             HhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc-eeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          238 KISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV-SLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       238 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      .+..+++|+.+++.++  ++.-+-..+.+|++|+ .+++.+  .++..+-. .+.+|++|+.|++.++
T Consensus       245 aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATGD  307 (329)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECSS
T ss_pred             hhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCCC
Confidence            6778899999999886  5544445577899999 999976  34333322 2347999999998654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.46  E-value=5.9e-06  Score=62.65  Aligned_cols=119  Identities=19%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             HHHHhcCCCCcEEEecCCcccCHHHHHHHHhc---CCCCcEEeccCCcccchHHHHHHHHh---CCCCcEEecCCCCCCC
Q 021374          133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKN---CKHIIDLNLSGCKNLLDKSLQLIADN---YQELESLNLTRCVKLT  206 (313)
Q Consensus       133 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~  206 (313)
                      ..+...-+.|+.|+|+++..+.+.+...++..   -..|+.|+|+++ .+++.+...++..   =..|++|+|++ +.+.
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig  111 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-NFLT  111 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence            33334445556666554335555554444332   245666666664 4555554444332   25666666666 4666


Q ss_pred             HHHHHHHHhhC---CCCCEEEeCCCC--CCCHHHHHH----hhcCCCCCEEecCCC
Q 021374          207 DGGLQKILIKC---SSLRSLNLYALS--GFTDEAYKK----ISLLAHLKFLDLCGA  253 (313)
Q Consensus       207 ~~~~~~~~~~~---~~L~~L~l~~~~--~~~~~~~~~----l~~~~~L~~L~l~~~  253 (313)
                      +.+...+...+   +.|+.|+++++.  .+.+.+...    +..-++|+.|+++.+
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            66665554433   356777766431  345443333    334566777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.44  E-value=3.9e-08  Score=73.79  Aligned_cols=83  Identities=18%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      ++|+.|++++ +.+.... ...+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|+
T Consensus        30 ~~l~~L~L~~-N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           30 TTTQVLYLYD-NQITKLE-PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             TTCSEEECCS-SCCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCCcEEEcCC-CcCCccC-hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCC
Confidence            6788888888 4554311 123456788888888873 454433344567788888888888 55543333466778888


Q ss_pred             eeeccCC
Q 021374          272 SLNLTWC  278 (313)
Q Consensus       272 ~L~l~~~  278 (313)
                      +|++++|
T Consensus       106 ~L~L~~N  112 (170)
T 3g39_A          106 HIWLLNN  112 (170)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            8888887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.38  E-value=6.3e-08  Score=72.92  Aligned_cols=84  Identities=18%  Similarity=0.118  Sum_probs=54.9

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCc
Q 021374          192 QELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLV  271 (313)
Q Consensus       192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  271 (313)
                      ++|+.|++++ +.+... ....+..+++|+.|+++++ .+.......+..+++|++|++++| .++......+.++++|+
T Consensus        33 ~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           33 TDKQRLWLNN-NQITKL-EPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             TTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred             CCCcEEEeCC-CCcccc-CHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCC
Confidence            6788888888 455431 1223466788888888873 454433333567788888888887 55543223366778888


Q ss_pred             eeeccCCC
Q 021374          272 SLNLTWCV  279 (313)
Q Consensus       272 ~L~l~~~~  279 (313)
                      +|++++|+
T Consensus       109 ~L~L~~N~  116 (174)
T 2r9u_A          109 HIYLYNNP  116 (174)
T ss_dssp             EEECCSSC
T ss_pred             EEEeCCCC
Confidence            88888873

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.38  E-value=1.1e-07  Score=84.96  Aligned_cols=179  Identities=16%  Similarity=0.106  Sum_probs=117.9

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      .+++.|+++++. ++.     +..   .-+++|+.|+++++ .++...     ..+++|++|+++++ .++.  +.. . 
T Consensus        59 ~~L~~L~Ls~n~-L~~-----lp~---~l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~--ip~-l-  118 (571)
T 3cvr_A           59 NQFSELQLNRLN-LSS-----LPD---NLPPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLST--LPE-L-  118 (571)
T ss_dssp             TTCSEEECCSSC-CSC-----CCS---CCCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC--CCC-C-
T ss_pred             CCccEEEeCCCC-CCc-----cCH---hHcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCC--cch-h-
Confidence            489999998763 432     110   12378999999986 444322     45789999999988 5554  222 1 


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                       ..+|++|+++++ .++.  ++.   .+++|+.|+++++ .++.  ++.   .+++|+.|+++++ .++... . +.  +
T Consensus       119 -~~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~L~~lp-~-l~--~  180 (571)
T 3cvr_A          119 -PASLKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNN-QLTFLP-E-LP--E  180 (571)
T ss_dssp             -CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSCCC-C-CC--T
T ss_pred             -hcCCCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCC-CCCCcc-h-hh--C
Confidence             238999999986 4544  222   4789999999994 5553  222   5789999999985 343311 1 33  8


Q ss_pred             CCCEEecCCCCCCChHHHHHhhC-----CCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCccc
Q 021374          244 HLKFLDLCGAQNLSDEGLACIAK-----CKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMN  306 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  306 (313)
                      +|++|++++| .++.-. . +..     .+.|+.|++++| .++... ..+. .+++|+.|++++|.-
T Consensus       181 ~L~~L~Ls~N-~L~~lp-~-~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~-~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          181 SLEALDVSTN-LLESLP-A-VPVRNHHSEETEIFFRCREN-RITHIP-ENIL-SLDPTCTIILEDNPL  242 (571)
T ss_dssp             TCCEEECCSS-CCSSCC-C-CC--------CCEEEECCSS-CCCCCC-GGGG-GSCTTEEEECCSSSC
T ss_pred             CCCEEECcCC-CCCchh-h-HHHhhhcccccceEEecCCC-cceecC-HHHh-cCCCCCEEEeeCCcC
Confidence            9999999999 565321 1 322     223399999998 666421 2233 489999999999863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.33  E-value=1.1e-07  Score=72.97  Aligned_cols=108  Identities=20%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      ++|++|+++++ .++.  +...+..+++|+.|+++++ .++......+ ..+++|+.|++++ +.+.... ...+..+++
T Consensus        31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~-N~l~~i~-~~~f~~l~~  103 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSY-NRLRCIP-PRTFDGLKS  103 (193)
T ss_dssp             TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCS-SCCCBCC-TTTTTTCTT
T ss_pred             CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCC-CccCEeC-HHHhCCCCC
Confidence            45666666655 3332  1122344566666666653 3332111111 2356666666666 3333211 112345566


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCC
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQN  255 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  255 (313)
                      |+.|+++++ .+.......+..+++|++|++++|+.
T Consensus       104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          104 LRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence            666666652 33322222344556666666666643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.32  E-value=4e-08  Score=75.31  Aligned_cols=113  Identities=18%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      ++|+.|+++++ .++.......+..+++|++|+++++ .++...... ...+++|+.|++++ +.+.... ...+..+++
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~-~~~~~~l~~  103 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGE-NKIKEIS-NKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCS-CCCCEEC-SSSSTTCTT
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCC-CcCCccC-HHHhcCCCC
Confidence            48899999887 5543222122356889999999985 444321122 23478999999988 4555421 112456789


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD  258 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  258 (313)
                      |+.|+++++ .++......+..+++|++|++++|+...+
T Consensus       104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          104 LKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999884 56554445567788999999999854433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.30  E-value=2.5e-08  Score=92.01  Aligned_cols=84  Identities=21%  Similarity=0.156  Sum_probs=41.0

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL  270 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  270 (313)
                      +++|+.|+|+++ .+.  .++..+..+++|+.|+++++ .++ .....++.+++|++|+|++| .++.- ...+.++++|
T Consensus       246 l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~L~~N-~l~~l-p~~~~~l~~L  318 (727)
T 4b8c_D          246 YDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSCFQLKYFYFFDN-MVTTL-PWEFGNLCNL  318 (727)
T ss_dssp             CCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGGTTCSEEECCSS-CCCCC-CSSTTSCTTC
T ss_pred             CCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCCCCCCEEECCCC-CCCcc-ChhhhcCCCc
Confidence            555555555552 333  12222345556666666553 333 22233455566666666665 33321 1224556666


Q ss_pred             ceeeccCCCCCC
Q 021374          271 VSLNLTWCVRIT  282 (313)
Q Consensus       271 ~~L~l~~~~~~~  282 (313)
                      ++|+|++| .++
T Consensus       319 ~~L~L~~N-~l~  329 (727)
T 4b8c_D          319 QFLGVEGN-PLE  329 (727)
T ss_dssp             CCEECTTS-CCC
T ss_pred             cEEeCCCC-ccC
Confidence            66666665 444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.23  E-value=1.6e-07  Score=70.85  Aligned_cols=109  Identities=16%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             CCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 021374          139 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCS  218 (313)
Q Consensus       139 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  218 (313)
                      .++|+.|+++++ .++... ......+++|++|+++++ .++.... .....+++|+.|+++++ .+... ....+..++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~  100 (177)
T 2o6r_A           27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSL-PNGVFDKLT  100 (177)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred             CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-Ccccc-CHHHhhCCc
Confidence            357777777776 443211 112245677778877774 3332111 11234677788887773 44421 111235567


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCC
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQ  254 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  254 (313)
                      +|+.|+++++ .+.......+..+++|++|++++|+
T Consensus       101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            7778877763 4443222334567777788887774

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.21  E-value=1.3e-07  Score=87.41  Aligned_cols=108  Identities=21%  Similarity=0.217  Sum_probs=78.7

Q ss_pred             HHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCC
Q 021374          188 ADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKC  267 (313)
Q Consensus       188 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  267 (313)
                      ...+++|+.|+|+++ .+..  +..-+..+++|+.|+++++ .++ .....+..+++|++|+|++| .++ .....+.++
T Consensus       220 ~~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l  292 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSC  292 (727)
T ss_dssp             --CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGG
T ss_pred             hccCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCC
Confidence            345789999999985 4442  2222347899999999985 555 33455788999999999999 566 333457789


Q ss_pred             CCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          268 KNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       268 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++|+|++| .++.... . +..+++|+.|+|++|.
T Consensus       293 ~~L~~L~L~~N-~l~~lp~-~-~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          293 FQLKYFYFFDN-MVTTLPW-E-FGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTCSEEECCSS-CCCCCCS-S-TTSCTTCCCEECTTSC
T ss_pred             CCCCEEECCCC-CCCccCh-h-hhcCCCccEEeCCCCc
Confidence            99999999998 6653221 2 4478999999999885

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.18  E-value=2.1e-09  Score=90.64  Aligned_cols=205  Identities=14%  Similarity=0.104  Sum_probs=116.7

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      +++++|+++++. ++.     +....+..+++|+.|+|+++........ ..+..+++|+++.+..+..+.... ...+.
T Consensus        30 ~~l~~L~Ls~N~-i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~  101 (350)
T 4ay9_X           30 RNAIELRFVLTK-LRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYIN-PEAFQ  101 (350)
T ss_dssp             TTCSEEEEESCC-CSE-----ECTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEEC-TTSBC
T ss_pred             CCCCEEEccCCc-CCC-----cCHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccC-chhhh
Confidence            578999998863 432     2222246779999999998643332111 122456777665443332443221 11235


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      .+++|++|+++++ .+....-... ....++..+++.++..+.......+......++.|+++++ .+.... .......
T Consensus       102 ~l~~L~~L~l~~n-~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~-~~~f~~~  177 (350)
T 4ay9_X          102 NLPNLQYLLISNT-GIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH-NSAFNGT  177 (350)
T ss_dssp             CCTTCCEEEEEEE-CCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC-TTSSTTE
T ss_pred             hcccccccccccc-ccccCCchhh-cccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC-hhhcccc
Confidence            6789999999885 3332111011 1235677888876555443111111112246888999873 444321 1122456


Q ss_pred             CCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +|++|.+.++..++.-....+.++++|++|++++| .++....    ..+.+|++|.+.++.
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTY  234 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCT
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCC
Confidence            89999998765665543344678899999999998 6654321    134567777665543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.1e-06  Score=69.97  Aligned_cols=48  Identities=25%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             CCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccccc
Q 021374           20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLREMN   68 (313)
Q Consensus        20 ~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~~~   68 (313)
                      .+|.||+.+||+||+++|+++++.|||+|+.+ +.++.+|+.+-.....
T Consensus         7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l-a~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNET-VRDPILWRYFLLRDLP   54 (312)
T ss_dssp             HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH-HTCHHHHHHHHHSSGG
T ss_pred             hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hccchHHHHHHhccCC
Confidence            34448999999999999999999999999977 6999999987665443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.97  E-value=3.8e-06  Score=62.83  Aligned_cols=84  Identities=18%  Similarity=0.093  Sum_probs=47.2

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      ++|+.|+++++ .++.... .....+++|+.|++++ +.+... ....+..+++|+.|+++++ .+.......+..+++|
T Consensus        30 ~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDN-NQLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCC-CCcCcc-ChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence            56777777774 3333111 1123467777777777 344421 1112356677777777763 4443333345567777


Q ss_pred             CEEecCCCC
Q 021374          246 KFLDLCGAQ  254 (313)
Q Consensus       246 ~~L~l~~~~  254 (313)
                      ++|++++|+
T Consensus       105 ~~L~L~~N~  113 (170)
T 3g39_A          105 THIWLLNNP  113 (170)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            777777774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.89  E-value=1.8e-06  Score=72.49  Aligned_cols=85  Identities=19%  Similarity=0.124  Sum_probs=49.5

Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN  269 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  269 (313)
                      .+++|+.|+|++.+.+.... ...+.++++|+.|+++++ .+.......+..+++|++|+|++| .++......+...+ 
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-  104 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS-  104 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC-
T ss_pred             CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC-
Confidence            35678888887534444311 112456777788887773 555544445667777788887777 44432211222233 


Q ss_pred             CceeeccCC
Q 021374          270 LVSLNLTWC  278 (313)
Q Consensus       270 L~~L~l~~~  278 (313)
                      |+.|++.+|
T Consensus       105 L~~l~l~~N  113 (347)
T 2ifg_A          105 LQELVLSGN  113 (347)
T ss_dssp             CCEEECCSS
T ss_pred             ceEEEeeCC
Confidence            777777776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.83  E-value=6e-05  Score=60.29  Aligned_cols=83  Identities=28%  Similarity=0.238  Sum_probs=43.2

Q ss_pred             hhCCCCCEEEeCCCCCCCH--HHHHHhhcCCCCCEEecCCCCCCChH-HHHHhhCCCCCceeeccCCCCCCh------HH
Q 021374          215 IKCSSLRSLNLYALSGFTD--EAYKKISLLAHLKFLDLCGAQNLSDE-GLACIAKCKNLVSLNLTWCVRITD------VG  285 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~------~~  285 (313)
                      .++++|+.|++++. .+..  .....+..+++|++|+|++| .+++. .+..+..+ +|++|++++| .+..      .-
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~N-pl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGN-SLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTS-TTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCC-cCccccCcchhH
Confidence            34556666666552 3332  11123345667777777776 44432 22223333 7777777776 3432      22


Q ss_pred             HHHHHHhCCCccEeec
Q 021374          286 VMAIAEGCSSLEFLSS  301 (313)
Q Consensus       286 ~~~l~~~~~~L~~L~l  301 (313)
                      ...+...+|+|+.||=
T Consensus       243 ~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHCTTCCEESS
T ss_pred             HHHHHHHCcccCeECC
Confidence            3345566777777753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.81  E-value=4.2e-06  Score=62.81  Aligned_cols=84  Identities=18%  Similarity=0.127  Sum_probs=49.2

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      ++|+.|+++++ .++... ......+++|+.|++++ +.+... ....+..+++|+.|+++++ .+.......+..+++|
T Consensus        33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNS-NKLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCC-CCCCcc-ChhHhCCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence            57788888774 343311 11223467788888877 355431 1112356678888888773 4443222335667788


Q ss_pred             CEEecCCCC
Q 021374          246 KFLDLCGAQ  254 (313)
Q Consensus       246 ~~L~l~~~~  254 (313)
                      ++|++++|+
T Consensus       108 ~~L~L~~N~  116 (174)
T 2r9u_A          108 THIYLYNNP  116 (174)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            888888774

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.67  E-value=1.2e-05  Score=64.81  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=36.2

Q ss_pred             CCchHHHHHHHcCCCccchh-HHhhccHHHHHHHccCCCcceee
Q 021374           20 ETVPKVIRIMSTRLSQRDII-SLLLVSPWLHRTLVSYPSLWLVI   62 (313)
Q Consensus        20 ~~~peiL~~If~~L~~~~l~-~~~~v~~~w~~~~~~~~~~~~~l   62 (313)
                      .+++|+|..||+||++++++ +++.|||+|+.+ +.++.+|+..
T Consensus        53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l-~~~~~~w~~~   95 (297)
T 2e31_A           53 ELPEPLLLRVLAELPATELVQACRLVCLRWKEL-VDGAPLWLLK   95 (297)
T ss_dssp             SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH-HTSHHHHHHH
T ss_pred             hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH-hcChHHHHHH
Confidence            44447999999999999999 999999999987 4778888855

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.62  E-value=9.3e-06  Score=70.74  Aligned_cols=51  Identities=20%  Similarity=0.158  Sum_probs=41.5

Q ss_pred             ccccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374           14 EETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL   64 (313)
Q Consensus        14 ~~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~   64 (313)
                      ..++...+|+|++.+||+||++++++++++|||+|++++...+.+|+.+.+
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~   61 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI   61 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            344544566689999999999999999999999999985444889997654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.48  E-value=0.00029  Score=56.29  Aligned_cols=87  Identities=32%  Similarity=0.370  Sum_probs=52.6

Q ss_pred             HHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhhCCCCCEEEeCCCCCCCHH-HHHHhhcCCCCCEEecCCCCCCCh----
Q 021374          185 QLIADNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGFTDE-AYKKISLLAHLKFLDLCGAQNLSD----  258 (313)
Q Consensus       185 ~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~----  258 (313)
                      ..+...+++|+.|+|++ +.+.. .++...+..+++|+.|++++. .+.+. .+..+..+ +|++|++.+|+ ++.    
T Consensus       163 ~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~  238 (267)
T 3rw6_A          163 RIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNS-LCDTFRD  238 (267)
T ss_dssp             HHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTST-TGGGCSS
T ss_pred             HHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCc-CccccCc
Confidence            33334577888888877 45543 223344567888888888773 44432 23333334 88999998885 432    


Q ss_pred             -HH--HHHhhCCCCCceeec
Q 021374          259 -EG--LACIAKCKNLVSLNL  275 (313)
Q Consensus       259 -~~--~~~l~~~~~L~~L~l  275 (313)
                       ..  ...+..+|+|+.||=
T Consensus       239 ~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEESS
T ss_pred             chhHHHHHHHHCcccCeECC
Confidence             11  223556888888874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.44  E-value=4.6e-06  Score=71.38  Aligned_cols=85  Identities=9%  Similarity=0.092  Sum_probs=39.3

Q ss_pred             HhhCCCCCEEEeCCCCCC----CHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHH
Q 021374          214 LIKCSSLRSLNLYALSGF----TDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAI  289 (313)
Q Consensus       214 ~~~~~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  289 (313)
                      +.+|++|+.+.+.+....    .......+..|++|+.+.+..+  ++.-+-..+.+|++|+.+.+..+  ++..+-.. 
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a-  341 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSA-  341 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTS-
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHh-
Confidence            345666666666542110    0111223445666666666532  33322333555666666666432  22222111 


Q ss_pred             HHhCCCccEeecCCc
Q 021374          290 AEGCSSLEFLSSGAE  304 (313)
Q Consensus       290 ~~~~~~L~~L~l~~~  304 (313)
                      +.+| +|+.|++.++
T Consensus       342 F~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGT  355 (401)
T ss_dssp             SSSS-CCCEEEECCS
T ss_pred             CCCC-CCCEEEEcCC
Confidence            2245 6666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.34  E-value=3.3e-06  Score=72.27  Aligned_cols=151  Identities=16%  Similarity=0.208  Sum_probs=80.0

Q ss_pred             hcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCC-CCCCHHHHHHHHh
Q 021374          137 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRC-VKLTDGGLQKILI  215 (313)
Q Consensus       137 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~  215 (313)
                      ..|++|+.+++..+ .++...-..+  .+.+|+.+.+...  +....-.++ ..|++|+.+.+... ..+....    +.
T Consensus       177 ~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~~--l~~I~~~aF-~~~~~L~~l~l~~~l~~I~~~a----F~  246 (401)
T 4fdw_A          177 YYCYNLKKADLSKT-KITKLPASTF--VYAGIEEVLLPVT--LKEIGSQAF-LKTSQLKTIEIPENVSTIGQEA----FR  246 (401)
T ss_dssp             TTCTTCCEEECTTS-CCSEECTTTT--TTCCCSEEECCTT--CCEECTTTT-TTCTTCCCEECCTTCCEECTTT----TT
T ss_pred             hCcccCCeeecCCC-cceEechhhE--eecccCEEEeCCc--hheehhhHh-hCCCCCCEEecCCCccCccccc----cc
Confidence            45667777777643 2221111111  1456676666532  211111111 23677777777541 1111111    12


Q ss_pred             hCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCC-----hHHHHHhhCCCCCceeeccCCCCCChHHHHHHH
Q 021374          216 KCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLS-----DEGLACIAKCKNLVSLNLTWCVRITDVGVMAIA  290 (313)
Q Consensus       216 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  290 (313)
                      + .+|+.+.+..  .+......++..|++|+.+.+.++. ..     .-+-..+.+|++|+.+.+.+  .++..+-. .+
T Consensus       247 ~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~-aF  319 (401)
T 4fdw_A          247 E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG-LL  319 (401)
T ss_dssp             T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTT-TT
T ss_pred             c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhh-hh
Confidence            2 5677777754  3333334456678899999887763 22     11223466788999998874  34333322 23


Q ss_pred             HhCCCccEeecCCc
Q 021374          291 EGCSSLEFLSSGAE  304 (313)
Q Consensus       291 ~~~~~L~~L~l~~~  304 (313)
                      .+|++|+.|.|..+
T Consensus       320 ~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          320 GGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTCCSCCEEEECTT
T ss_pred             cCCCCccEEEECcc
Confidence            47889999988654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.31  E-value=2.8e-05  Score=65.23  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=51.9

Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      +..+++|+.|+|++.+.++..... ....+++|+.|+|++ +.+... ....+.++++|+.|+++++ .+.......+..
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~-N~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~  102 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVK-SGLRFV-APDAFHFTPRLSRLNLSFN-ALESLSWKTVQG  102 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCS-SCCCEE-CTTGGGSCSCCCEEECCSS-CCSCCCSTTTCS
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCC-Ccccee-CHHHhcCCcCCCEEeCCCC-ccceeCHHHccc
Confidence            345667888888752344332111 123477888888888 455541 1123467788888888873 443221122223


Q ss_pred             CCCCCEEecCCCCCCCh
Q 021374          242 LAHLKFLDLCGAQNLSD  258 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~  258 (313)
                      ++ |+.|+|.+|....+
T Consensus       103 ~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A          103 LS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CC-CCEEECCSSCCCCC
T ss_pred             CC-ceEEEeeCCCccCC
Confidence            33 88888888754434

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.28  E-value=3.8e-05  Score=66.39  Aligned_cols=47  Identities=15%  Similarity=0.140  Sum_probs=39.1

Q ss_pred             cccCCchH----HHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecc
Q 021374           17 WSKETVPK----VIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDL   64 (313)
Q Consensus        17 ~~~~~~pe----iL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~   64 (313)
                      +...+|+|    ++.+||+||++++++++++|||+|+.+ +..+.+|+.+-.
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~-~~~~~~w~~~~~   60 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV-TSDGMLWKKLIE   60 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH-HHHTTHHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hcChHHHHHHHH
Confidence            33345558    999999999999999999999999987 467899997743

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.24  E-value=0.00011  Score=63.69  Aligned_cols=48  Identities=8%  Similarity=0.064  Sum_probs=38.9

Q ss_pred             cccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374           15 ETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID   63 (313)
Q Consensus        15 ~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~   63 (313)
                      .++...+|+|++.+||+||+++++.++++|||+|+.+ +..+.+|+.+.
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~-~~~~~~w~~~~   63 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL-AEDNLLWREKC   63 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH-HTCSHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh-cCchhHhhhhe
Confidence            3444345558999999999999999999999999987 46777888653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.73  E-value=0.00018  Score=61.39  Aligned_cols=84  Identities=19%  Similarity=0.301  Sum_probs=51.3

Q ss_pred             HhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhC
Q 021374          214 LIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGC  293 (313)
Q Consensus       214 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  293 (313)
                      +..+.+|+.+.+..  .+...+..++..+.+|+.+.|...  ++.-+-..+.+|.+|+.+.+..+  ++..+-. .+.+|
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C  365 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-AFQGC  365 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT-TBTTC
T ss_pred             cccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHH-HhhCC
Confidence            34677788887754  233222344567788888888653  44333344677888888888643  3322222 23478


Q ss_pred             CCccEeecCCc
Q 021374          294 SSLEFLSSGAE  304 (313)
Q Consensus       294 ~~L~~L~l~~~  304 (313)
                      ++|+.+++..+
T Consensus       366 ~~L~~i~lp~~  376 (394)
T 4fs7_A          366 INLKKVELPKR  376 (394)
T ss_dssp             TTCCEEEEEGG
T ss_pred             CCCCEEEECCC
Confidence            88888887554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.08  E-value=0.0031  Score=53.66  Aligned_cols=60  Identities=15%  Similarity=0.266  Sum_probs=28.8

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      .+|.+|+.+.+..  .++..+-.++..|.+|+.+.|..+  ++.-+-..+.+|++|+.+++.++
T Consensus       308 ~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          308 AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence            4556666666543  122222233445566666666433  32222233555666666666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.05  E-value=0.0083  Score=51.02  Aligned_cols=105  Identities=15%  Similarity=0.262  Sum_probs=67.5

Q ss_pred             hCCCCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          190 NYQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       190 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      .|.+|+.+.+.... .+..    ..+.+|++|+.+.+..  .+....-.++..|.+|+.+.|..+  ++.-+-..+.+|.
T Consensus       263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~  334 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE  334 (394)
T ss_dssp             TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred             ecccccEEecccccceecC----cccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence            46778888775521 1111    1245788899888864  333333345668899999999764  4443334577899


Q ss_pred             CCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          269 NLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      +|+.+.+...  ++..+-.. +.+|++|+.+++.++.
T Consensus       335 ~L~~i~ip~s--v~~I~~~a-F~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          335 QLERIAIPSS--VTKIPESA-FSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEECTT--CCBCCGGG-GTTCTTCCEEEESSCH
T ss_pred             CCCEEEECcc--cCEEhHhH-hhCCCCCCEEEECCce
Confidence            9999999643  33322222 3489999999998753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.88  E-value=0.0067  Score=51.27  Aligned_cols=82  Identities=22%  Similarity=0.338  Sum_probs=38.5

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS  294 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  294 (313)
                      .++.+|+.+.+..  .+.......+..+++|+.+.+.++ .++.-+-..+.+|.+|+.+.|...  ++..+-.. +.+|.
T Consensus       260 ~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a-F~~C~  333 (379)
T 4h09_A          260 QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYA-FKNCK  333 (379)
T ss_dssp             TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTT-TTTCT
T ss_pred             ceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHH-hhCCC
Confidence            4455666666543  222222233445666666666544 233222233556666666666431  22222111 22566


Q ss_pred             CccEeecC
Q 021374          295 SLEFLSSG  302 (313)
Q Consensus       295 ~L~~L~l~  302 (313)
                      +|+.+.+.
T Consensus       334 ~L~~i~ip  341 (379)
T 4h09_A          334 ALSTISYP  341 (379)
T ss_dssp             TCCCCCCC
T ss_pred             CCCEEEEC
Confidence            66666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.73  E-value=0.0074  Score=51.34  Aligned_cols=79  Identities=11%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             hCCCCcEEecCCCC-CCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCC
Q 021374          190 NYQELESLNLTRCV-KLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCK  268 (313)
Q Consensus       190 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  268 (313)
                      .|.+|+.+.+.... .+..    ..+.+|++|+.+.+..  .+.......+..++.|+.+.+..+......   ....+.
T Consensus       160 ~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~---~~~~~~  230 (394)
T 4fs7_A          160 TCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYYLGD---FALSKT  230 (394)
T ss_dssp             TCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCEECT---TTTTTC
T ss_pred             ccCCCcEEecCCccceecc----ccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceEeeh---hhcccC
Confidence            46778888876521 1111    1245677788777754  222222234456777777776554221111   122356


Q ss_pred             CCceeeccC
Q 021374          269 NLVSLNLTW  277 (313)
Q Consensus       269 ~L~~L~l~~  277 (313)
                      +|+.+.+..
T Consensus       231 ~l~~i~ip~  239 (394)
T 4fs7_A          231 GVKNIIIPD  239 (394)
T ss_dssp             CCCEEEECT
T ss_pred             CCceEEECC
Confidence            777777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.63  E-value=0.089  Score=36.82  Aligned_cols=39  Identities=18%  Similarity=0.020  Sum_probs=27.0

Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCC
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRIT  282 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  282 (313)
                      ++|++|+|++| .++.-....+..+++|++|+|++|+..=
T Consensus        31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCeec
Confidence            37888888888 5554333445667888888888875543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.76  E-value=0.29  Score=34.17  Aligned_cols=45  Identities=18%  Similarity=0.051  Sum_probs=31.8

Q ss_pred             CCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHH
Q 021374          218 SSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLAC  263 (313)
Q Consensus       218 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  263 (313)
                      ++|+.|++++ +.++......+..+++|++|+|.+|+..-+-.+..
T Consensus        31 ~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~   75 (130)
T 3rfe_A           31 VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWRCDCRLVP   75 (130)
T ss_dssp             TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred             cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCeeccCccHH
Confidence            4799999988 45554444456678899999999998765544433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=83.75  E-value=0.22  Score=41.81  Aligned_cols=84  Identities=13%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             hhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374          215 IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS  294 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  294 (313)
                      .++.+|+.+.+..  .++.....++..+.+|+.+.+...  ++..+-..+.+|++|+.+.+.++ .++..+-. .+.+|.
T Consensus       237 ~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~-aF~~c~  310 (379)
T 4h09_A          237 YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPR-VFMDCV  310 (379)
T ss_dssp             TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTT-TTTTCT
T ss_pred             cCCccceEEEcCC--CccEeCccccceeehhcccccccc--ceecccccccccccccccccccc-ccceehhh-hhcCCC
Confidence            4567777777754  233222334556788888888654  44333344678999999999765 44433222 234789


Q ss_pred             CccEeecCCc
Q 021374          295 SLEFLSSGAE  304 (313)
Q Consensus       295 ~L~~L~l~~~  304 (313)
                      +|+.+.|..+
T Consensus       311 ~L~~i~lp~~  320 (379)
T 4h09_A          311 KLSSVTLPTA  320 (379)
T ss_dssp             TCCEEECCTT
T ss_pred             CCCEEEcCcc
Confidence            9999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 51/272 (18%), Positives = 98/272 (36%), Gaps = 44/272 (16%)

Query: 58  LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLE 117
           LW  +DL   N   +     LS  +          F       H    +         ++
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFR---------VQ 49

Query: 118 SLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK 177
            ++L+    I    +  I S C +L+  S+    R++D  +  L     +++ LNLSGC 
Sbjct: 50  HMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCS 106

Query: 178 NLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKIL----------------------- 214
              + +LQ +  +   L+ LNL+ C   T+  +Q  +                       
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 215 -----IKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKN 269
                 +C +L  L+L       ++ +++   L +L+ L L    ++  E L  + +   
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 270 LVSLNLTWCVRITDVGVMAIAEGCSSLEFLSS 301
           L +L +   V   D  +  + E    L+   S
Sbjct: 227 LKTLQVFGIV--PDGTLQLLKEALPHLQINCS 256

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 115 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDL 171
           D++SL++  C+++SD     +     + +V  +     +T+   + +   ++    + +L
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 60

Query: 172 NLSGCKNLLDKSLQLIAD----NYQELESLNLTRC 202
           NL     L D  +  +         +++ L+L  C
Sbjct: 61  NLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 28/124 (22%)

Query: 193 ELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCG 252
           +++SL++ +C +L+D    ++L      + + L    G T+   K IS            
Sbjct: 3   DIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDIS------------ 48

Query: 253 AQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEG----CSSLEFLSSGAEMNCC 308
                    + +     L  LNL     + DVGV  + +G       ++ LS        
Sbjct: 49  ---------SALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

Query: 309 SCSH 312
           +   
Sbjct: 99  AGCG 102

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 96  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD 155
           D   + L+L   +    L       +   +      + II    PEL   ++  N     
Sbjct: 21  DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 80

Query: 156 IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLN---LTRCVKLTDGGLQK 212
             +  +V+   ++  LNLSG +   ++ L  I     E   L+   L+   +     +  
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

Query: 213 ILIKCSSLRSLN 224
           I  +   L  L+
Sbjct: 141 IRERFPKLLRLD 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.95
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.38
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.24
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.21
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.08
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.05
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.01
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.8
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.74
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.73
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.68
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.53
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.47
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.12
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.73
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.28
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.13
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.51

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.9e-26  Score=185.65  Aligned_cols=206  Identities=20%  Similarity=0.327  Sum_probs=176.5

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ..|++|+++++ .+++..+..+..    .+++|++|++++| .+++..+..+ ..+++|++|++++|..+++.++..++.
T Consensus        46 ~~L~~LdLs~~-~i~~~~l~~l~~----~c~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          46 FRVQHMDLSNS-VIEVSTLHGILS----QCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             BCCCEEECTTC-EECHHHHHHHHT----TBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCEEECCCC-ccCHHHHHHHHH----hCCCccccccccc-CCCcHHHHHH-hcCCCCcCccccccccccccccchhhH
Confidence            46899999876 466666777754    4499999999998 6777777766 468999999999988999999999888


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHH-hCCCCcEEecCCC-CCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIAD-NYQELESLNLTRC-VKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      .+++|++|++++|..+++..+..... .+++|+.|++.+| ..+++.++..+..++++|++|++++|..+++..+..+..
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            99999999999998888877765444 4589999999986 467888898888999999999999988899988888999


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                      +++|++|++++|..+++.++..++++++|++|++.+|  +++.++..+.+.+|+|+.
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i  253 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI  253 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCccccc
Confidence            9999999999998999988888889999999999987  788889999888998874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-24  Score=174.77  Aligned_cols=233  Identities=21%  Similarity=0.294  Sum_probs=184.9

Q ss_pred             cceeecccccccchhhHHHHhhccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHh
Q 021374           58 LWLVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  137 (313)
Q Consensus        58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  137 (313)
                      +|+++|++......+.....+.    ..+..+.+.... +......      .....+|++|++++| .++...+..+..
T Consensus         1 LW~~lDLs~~~l~~~~l~~l~~----~~~~~lrl~~~~-~~~~~~~------~~~~~~L~~LdLs~~-~i~~~~l~~l~~   68 (284)
T d2astb2           1 LWQTLDLTGKNLHPDVTGRLLS----QGVIAFRCPRSF-MDQPLAE------HFSPFRVQHMDLSNS-VIEVSTLHGILS   68 (284)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHH----TTCSEEECTTCE-ECSCCCS------CCCCBCCCEEECTTC-EECHHHHHHHHT
T ss_pred             CcCEEECCCCCCCchHHHHHHh----ccceEeeccccc-cccchhh------hccCCCCCEEECCCC-ccCHHHHHHHHH
Confidence            6999999865433332222222    233444443221 1110000      124468999999997 678888888889


Q ss_pred             cCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh-h
Q 021374          138 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILI-K  216 (313)
Q Consensus       138 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~  216 (313)
                      .|++|++|++.++ .+++..+..+. .+++|++|++++|..+++.++..+...+++|++|++++|..+++.++...+. .
T Consensus        69 ~c~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          69 QCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             hCCCccccccccc-CCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            9999999999999 88888888775 5899999999999999999999999899999999999998999888765554 4


Q ss_pred             CCCCCEEEeCCCC-CCCHHHHHHhh-cCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCC
Q 021374          217 CSSLRSLNLYALS-GFTDEAYKKIS-LLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCS  294 (313)
Q Consensus       217 ~~~L~~L~l~~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  294 (313)
                      +++|+.|+++++. .+++..+..+. .+|+|++|++++|..+++.++..+.++++|++|++++|..+++.++..+. .+|
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~  225 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIP  225 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cCC
Confidence            5899999999863 57887777664 79999999999998999998888999999999999999999999988876 699


Q ss_pred             CccEeecCCcc
Q 021374          295 SLEFLSSGAEM  305 (313)
Q Consensus       295 ~L~~L~l~~~~  305 (313)
                      +|+.|++.+|.
T Consensus       226 ~L~~L~l~~~~  236 (284)
T d2astb2         226 TLKTLQVFGIV  236 (284)
T ss_dssp             TCCEEECTTSS
T ss_pred             CCCEEeeeCCC
Confidence            99999998873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=3.7e-13  Score=111.49  Aligned_cols=239  Identities=18%  Similarity=0.180  Sum_probs=165.1

Q ss_pred             eeecccccccchhhHHHHh--hccccCCcCeeeccCCcc--Cc---hHHHHHHHHHhcCCCCCCcEEecCCCCCCChHH-
Q 021374           60 LVIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQD--IE---DRHLELLKTKCLGSLQDLESLNLNGCQKISDKG-  131 (313)
Q Consensus        60 ~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~--~~---~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~-  131 (313)
                      +.+++..... .+.-...+  .....++|+.+++.++..  ..   ......+... +...++|+.|+++++ .++..+ 
T Consensus        34 ~~L~Ls~n~i-~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~  110 (344)
T d2ca6a1          34 KEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA-LLKCPKLHTVRLSDN-AFGPTAQ  110 (344)
T ss_dssp             CEEECTTSEE-CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH-HTTCTTCCEEECCSC-CCCTTTH
T ss_pred             CEEECcCCcC-CHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHH-HhhCCCccccccccc-ccccccc
Confidence            5688776432 22222222  234568899999976431  11   2233333332 456789999999986 455544 


Q ss_pred             --HHHHHhcCCCCcEEEecCCcccCHHHHHHH------------HhcCCCCcEEeccCCcccchHHHHHH---HHhCCCC
Q 021374          132 --IEIISSTCPELKVFSIYWNVRVTDIGIQHL------------VKNCKHIIDLNLSGCKNLLDKSLQLI---ADNYQEL  194 (313)
Q Consensus       132 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L  194 (313)
                        +......+++|+.|+++++ .++..+...+            ....+.|+.+.+++. .+++.+...+   ...+++|
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTC
T ss_pred             cchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeecccc-cccccccccccchhhhhhhh
Confidence              3334456899999999988 5655443222            235688999999884 5665544443   3457899


Q ss_pred             cEEecCCCCCCCHHHHHHH----HhhCCCCCEEEeCCCCCCCHHHHHH----hhcCCCCCEEecCCCCCCChHHHHHhh-
Q 021374          195 ESLNLTRCVKLTDGGLQKI----LIKCSSLRSLNLYALSGFTDEAYKK----ISLLAHLKFLDLCGAQNLSDEGLACIA-  265 (313)
Q Consensus       195 ~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~-  265 (313)
                      +.|+++++ .+.+.++..+    +..+++|+.|+++++ .+++.+...    +..+++|++|++++| .+++.+...++ 
T Consensus       189 ~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~  265 (344)
T d2ca6a1         189 HTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVD  265 (344)
T ss_dssp             CEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHH
T ss_pred             cccccccc-cccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcC-ccCchhhHHHHH
Confidence            99999994 7887665443    346789999999984 576665444    458899999999999 79988776664 


Q ss_pred             ---C--CCCCceeeccCCCCCChHHHHHHHH----hCCCccEeecCCcccc
Q 021374          266 ---K--CKNLVSLNLTWCVRITDVGVMAIAE----GCSSLEFLSSGAEMNC  307 (313)
Q Consensus       266 ---~--~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~  307 (313)
                         .  .++|++|++++| .+++.++..+.+    .+++|+.|++++|...
T Consensus       266 ~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence               2  478999999998 799988766654    5789999999988654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.7e-12  Score=110.04  Aligned_cols=100  Identities=16%  Similarity=0.206  Sum_probs=65.2

Q ss_pred             HHHHHHccCCCcceeecccccccchhhHHHHh--hccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCC
Q 021374           47 WLHRTLVSYPSLWLVIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC  124 (313)
Q Consensus        47 ~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~  124 (313)
                      .|.+.+...+ ..+.+++.+..... .-...+  ....+++|++|+++++ .+++..+..+.........+|++|++++|
T Consensus        18 ~~~~l~~~l~-~l~~L~L~~~~i~~-~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n   94 (460)
T d1z7xw1          18 RWAELLPLLQ-QCQVVRLDDCGLTE-ARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC   94 (460)
T ss_dssp             HHHHHHHHHT-TCSEEEEESSCCCH-HHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             HHHHHHHhCC-CCCEEEeCCCCCCH-HHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCC
Confidence            3444433333 33678887765332 222222  1346789999999986 57777777776544334468999999997


Q ss_pred             CCCChHHHHHHH---hcCCCCcEEEecCC
Q 021374          125 QKISDKGIEIIS---STCPELKVFSIYWN  150 (313)
Q Consensus       125 ~~~~~~~~~~~~---~~~~~L~~L~l~~~  150 (313)
                       .+++.+...+.   ..+++|++|+++++
T Consensus        95 -~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          95 -CLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             -CCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             -Cccccccccccchhhccccccccccccc
Confidence             67776655543   45789999999876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=2.6e-11  Score=100.16  Aligned_cols=193  Identities=17%  Similarity=0.185  Sum_probs=140.4

Q ss_pred             cccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHH------------HhcCCCCcEEEec
Q 021374           81 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII------------SSTCPELKVFSIY  148 (313)
Q Consensus        81 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~l~  148 (313)
                      ..+++|+.|+++++ .+++..+..+... +...++|++|+++++ .++..+...+            ....+.|+.+.+.
T Consensus        90 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          90 LKCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             TTCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             hhCCCccccccccc-ccccccccchhhh-hcccccchheecccc-cccccccccccccccccccccccccCcccceeecc
Confidence            35689999999986 4565555555433 234589999999987 4554433222            2346889999999


Q ss_pred             CCcccCHHHHHH---HHhcCCCCcEEeccCCcccchHHHHHH----HHhCCCCcEEecCCCCCCCHHHHHHH---HhhCC
Q 021374          149 WNVRVTDIGIQH---LVKNCKHIIDLNLSGCKNLLDKSLQLI----ADNYQELESLNLTRCVKLTDGGLQKI---LIKCS  218 (313)
Q Consensus       149 ~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~l----~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~  218 (313)
                      ++ .+++.++..   ....++.|+.|+++++ .+++.+...+    ...+++|+.|++++ +.+++.+...+   +..++
T Consensus       167 ~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         167 RN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             SS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCT
T ss_pred             cc-cccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhccccccc-ccccccccccccccccccc
Confidence            87 777665444   3456889999999996 5777654432    23578999999998 46777665444   46789


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhh------cCCCCCEEecCCCCCCChHHHHHhh-----CCCCCceeeccCCCCCC
Q 021374          219 SLRSLNLYALSGFTDEAYKKIS------LLAHLKFLDLCGAQNLSDEGLACIA-----KCKNLVSLNLTWCVRIT  282 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~------~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~  282 (313)
                      +|++|++++| .+++.+...++      ..+.|++|++++| .+++.++..+.     ++++|++|++++| .++
T Consensus       244 ~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-~~~  315 (344)
T d2ca6a1         244 NLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS  315 (344)
T ss_dssp             TCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred             cchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC-cCC
Confidence            9999999996 68887766664      3468999999999 69888766553     4789999999998 553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.3e-10  Score=96.78  Aligned_cols=209  Identities=22%  Similarity=0.224  Sum_probs=97.9

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHH---HHHhcCCCCcEEEecCCcccCHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE---IISSTCPELKVFSIYWNVRVTDIGIQ  159 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~  159 (313)
                      .+.++.+.+..+. ..+................++.++++++ .+......   ......+.++.++++++ .+++.++.
T Consensus       225 ~~~~~~l~~~~n~-~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~  301 (460)
T d1z7xw1         225 KASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGAR  301 (460)
T ss_dssp             CTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHH
T ss_pred             cccccccchhhcc-ccccccchhhcccccccccccccccccc-cccccccccccccccccccccccccccc-cccccccc
Confidence            3445555555432 2222222222222334455666666654 23322221   11233455666666655 45554444


Q ss_pred             HHHh----cCCCCcEEeccCCcccchHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHHh----hCCCCCEEEeCCC
Q 021374          160 HLVK----NCKHIIDLNLSGCKNLLDKSLQLI---ADNYQELESLNLTRCVKLTDGGLQKILI----KCSSLRSLNLYAL  228 (313)
Q Consensus       160 ~~~~----~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~  228 (313)
                      .+..    ..+.|+.+.++++ .+++.....+   ....++|++|++++ +.+.+.++..+..    ..+.|++|++++|
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             hhhcccccccccccccccccc-chhhhhhhhcccccccccchhhhheee-ecccCcccchhhhhhhcccCCCCEEECCCC
Confidence            4322    2235666666654 3333333222   23345666666665 3455544444332    2344666666664


Q ss_pred             CCCCHHHHHHh----hcCCCCCEEecCCCCCCChHHHHHhh-----CCCCCceeeccCCCCCChHH---HHHHHHhCCCc
Q 021374          229 SGFTDEAYKKI----SLLAHLKFLDLCGAQNLSDEGLACIA-----KCKNLVSLNLTWCVRITDVG---VMAIAEGCSSL  296 (313)
Q Consensus       229 ~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L  296 (313)
                       .+++.+...+    ..+++|++|+|++| .+++.++..+.     +...|+.|++.++ .+++..   +..+.+..|+|
T Consensus       380 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~-~~~~~~~~~l~~l~~~~~~l  456 (460)
T d1z7xw1         380 -DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSL  456 (460)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTS
T ss_pred             -CCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCC-CCCHHHHHHHHHHHHhCCCC
Confidence             4555444333    24566666666665 55555544432     2335666666655 444433   33334455555


Q ss_pred             cEe
Q 021374          297 EFL  299 (313)
Q Consensus       297 ~~L  299 (313)
                      +.|
T Consensus       457 ~~~  459 (460)
T d1z7xw1         457 RVI  459 (460)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-13  Score=110.98  Aligned_cols=211  Identities=14%  Similarity=0.115  Sum_probs=137.5

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ..+++|+++++. ++.-.     ...+..+++|++|++++. .+..... .....++.++.+.......+..... ....
T Consensus        32 ~~~~~L~Ls~N~-i~~i~-----~~~f~~l~~L~~L~ls~n-~l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~  102 (284)
T d1ozna_          32 AASQRIFLHGNR-ISHVP-----AASFRACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVDP-ATFH  102 (284)
T ss_dssp             TTCSEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCCT-TTTT
T ss_pred             CCCCEEECcCCc-CCCCC-----HHHhhccccccccccccc-ccccccc-ccccccccccccccccccccccccc-hhhc
Confidence            567899998853 43211     112456789999999875 3333221 1224467778877654433332211 1235


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      .+++|++|+++++. +..... ......++|+.+++.+ +.++... ...+..+++|+.|+++++ .+.......+..++
T Consensus       103 ~l~~L~~L~l~~n~-~~~~~~-~~~~~~~~L~~l~l~~-N~l~~i~-~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~  177 (284)
T d1ozna_         103 GLGRLHTLHLDRCG-LQELGP-GLFRGLAALQYLYLQD-NALQALP-DDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH  177 (284)
T ss_dssp             TCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred             ccccCCEEecCCcc-cccccc-cccchhcccchhhhcc-ccccccC-hhHhccccchhhcccccC-cccccchhhhcccc
Confidence            67899999998864 222111 1223468899999988 4554311 123467789999999884 55544445567889


Q ss_pred             CCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      +|+++++++| .++......+.++++|++|++++| .++..... .+..+++|+.|++++|.--|.|+
T Consensus       178 ~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~-~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         178 SLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccchhhhhhc-cccccChhHhhhhhhccccccccc-cccccccc-ccccccccCEEEecCCCCCCCcc
Confidence            9999999998 566544455778899999999988 66554443 34478999999999998777776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.4e-11  Score=93.48  Aligned_cols=160  Identities=19%  Similarity=0.223  Sum_probs=101.2

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      .++++|+++++. +++.  .. ...+++|++|+++++ .+++.  .. ...+++|++|+++++......   .+ ..+++
T Consensus        40 ~~l~~L~l~~~~-i~~l--~~-l~~l~nL~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~---~l-~~l~~  107 (199)
T d2omxa2          40 DQVTTLQADRLG-IKSI--DG-VEYLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNNQIADIT---PL-ANLTN  107 (199)
T ss_dssp             TTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCCCG---GG-TTCTT
T ss_pred             cCCCEEECCCCC-CCCc--cc-cccCCCcCcCccccc-cccCc--cc-ccCCccccccccccccccccc---cc-ccccc
Confidence            667777777653 3221  11 156788888888877 45432  12 346778888888875332221   22 34788


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++......    .+..+++|+.|+++++ .+..  +..+..+++|++|++.+| .+++-  ..+.++++|++|
T Consensus       108 L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n-~l~~--~~~l~~~~~L~~L~l~~n-~l~~l--~~l~~l~~L~~L  177 (199)
T d2omxa2         108 LTGLTLFNNQITDID----PLKNLTNLNRLELSSN-TISD--ISALSGLTSLQQLNFSSN-QVTDL--KPLANLTTLERL  177 (199)
T ss_dssp             CSEEECCSSCCCCCG----GGTTCTTCSEEECCSS-CCCC--CGGGTTCTTCSEEECCSS-CCCCC--GGGTTCTTCCEE
T ss_pred             ccccccccccccccc----ccchhhhhHHhhhhhh-hhcc--cccccccccccccccccc-cccCC--ccccCCCCCCEE
Confidence            888888875433321    1456788888888874 3432  234667888899998888 55542  346778899999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEe
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFL  299 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L  299 (313)
                      ++++| .+++..  . +..+++|++|
T Consensus       178 ~ls~N-~i~~i~--~-l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSN-KVSDIS--V-LAKLTNLESL  199 (199)
T ss_dssp             ECCSS-CCCCCG--G-GGGCTTCSEE
T ss_pred             ECCCC-CCCCCc--c-ccCCCCCCcC
Confidence            99888 676632  1 3467788765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=1.4e-11  Score=94.40  Aligned_cols=164  Identities=26%  Similarity=0.307  Sum_probs=102.9

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      .+|++|+++++....-.+    ...+++|++|+++++ .+++.  .. ...+++|+.|+++++ .+++  +..+ ..+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n-~i~~l--~~-~~~l~~L~~L~l~~n-~i~~--l~~l-~~l~~  113 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGN-KLTDI--KP-LANLKNLGWLFLDEN-KVKD--LSSL-KDLKK  113 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCC--GGGG-TTCTT
T ss_pred             cCccEEECcCCCCCCchh----HhhCCCCCEEeCCCc-cccCc--cc-cccCccccccccccc-cccc--cccc-ccccc
Confidence            456777777653222222    256777888888777 44432  12 245677888888775 4544  2222 34678


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|++.++. ...  +. .+..+++++.++++++ .+.+  ...+..+++|+++++++| .+++  +..+.++++|++|
T Consensus       114 L~~L~l~~~~-~~~--~~-~l~~l~~l~~l~~~~n-~l~~--~~~~~~l~~L~~l~l~~n-~l~~--i~~l~~l~~L~~L  183 (210)
T d1h6ta2         114 LKSLSLEHNG-ISD--IN-GLVHLPQLESLYLGNN-KITD--ITVLSRLTKLDTLSLEDN-QISD--IVPLAGLTKLQNL  183 (210)
T ss_dssp             CCEEECTTSC-CCC--CG-GGGGCTTCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSS-CCCC--CGGGTTCTTCCEE
T ss_pred             cccccccccc-ccc--cc-cccccccccccccccc-cccc--cccccccccccccccccc-cccc--cccccCCCCCCEE
Confidence            8888888753 322  11 2466788888888774 3433  234567788888888888 5554  2336778888899


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGA  303 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  303 (313)
                      ++++| .+++..  . +.++++|+.|+|++
T Consensus       184 ~Ls~N-~i~~l~--~-l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKN-HISDLR--A-LAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSS-CCCBCG--G-GTTCTTCSEEEEEE
T ss_pred             ECCCC-CCCCCh--h-hcCCCCCCEEEccC
Confidence            98888 676532  2 34678888888864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.8e-13  Score=107.22  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=16.3

Q ss_pred             CCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 021374          111 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  150 (313)
Q Consensus       111 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  150 (313)
                      ..+++|+.|+|+++ .++...  . ...+++|++|+++++
T Consensus        52 ~~l~~L~~L~L~~N-~l~~l~--~-~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          52 MPYTRLTQLNLDRA-ELTKLQ--V-DGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TTCTTCCEEECTTS-CCCEEE--C-CSCCTTCCEEECCSS
T ss_pred             hccccccccccccc-cccccc--c-ccccccccccccccc
Confidence            34455566665554 222211  0 123455555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=2.6e-11  Score=94.04  Aligned_cols=187  Identities=17%  Similarity=0.183  Sum_probs=127.3

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      +.+|+.|++.++. +++  +..     +..+++|+.|+++++.......    ...+++|+++.++++ .+++  +..+ 
T Consensus        40 l~~L~~L~l~~~~-i~~--l~~-----l~~l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~n-~~~~--i~~l-  103 (227)
T d1h6ua2          40 LDGITTLSAFGTG-VTT--IEG-----VQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGN-PLKN--VSAI-  103 (227)
T ss_dssp             HHTCCEEECTTSC-CCC--CTT-----GGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSC-CCSC--CGGG-
T ss_pred             cCCcCEEECCCCC-CCc--chh-----HhcCCCCcEeecCCceeecccc----ccccccccccccccc-cccc--cccc-
Confidence            4678888888763 332  111     3467999999999863322222    367889999999877 4432  2222 


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|+.+.++++.......   + ...+.++.+.+.++. +...  . .+..+++|+.|.++++. +.+  ...++.+
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~~---~-~~~~~~~~l~~~~~~-~~~~--~-~~~~~~~L~~L~l~~n~-~~~--~~~l~~l  172 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVTP---L-AGLSNLQVLYLDLNQ-ITNI--S-PLAGLTNLQYLSIGNAQ-VSD--LTPLANL  172 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCGG---G-TTCTTCCEEECCSSC-CCCC--G-GGGGCTTCCEEECCSSC-CCC--CGGGTTC
T ss_pred             cccccccccccccccccccch---h-ccccchhhhhchhhh-hchh--h-hhccccccccccccccc-ccc--chhhccc
Confidence            468899999998875332221   1 236889999988753 3321  1 14678899999998853 332  2236788


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA  303 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  303 (313)
                      ++|++|++++| .+++  +..++++++|++|++++| .+++...   +..+++|+.|++++
T Consensus       173 ~~L~~L~Ls~n-~l~~--l~~l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         173 SKLTTLKADDN-KISD--ISPLASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECCSS-CCCC--CGGGGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred             ccceecccCCC-ccCC--ChhhcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence            99999999998 6665  234788999999999998 7776432   45789999999863

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-11  Score=66.64  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=33.5

Q ss_pred             CchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcc
Q 021374           21 TVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLW   59 (313)
Q Consensus        21 ~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~   59 (313)
                      +|+|++.+||+||+++|++++++|||+|+++ +.++.+|
T Consensus         4 LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l-~~~~~lW   41 (41)
T d1fs1a1           4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESLW   41 (41)
T ss_dssp             SCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH-HTCGGGC
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCcccC
Confidence            4448999999999999999999999999997 5777776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=2.1e-10  Score=95.89  Aligned_cols=189  Identities=21%  Similarity=0.327  Sum_probs=126.1

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++++.++++.+. +.....       ...+++|+.|+++++ .+.+.+  . ...+++|+.|++.++ .+++..  . 
T Consensus       195 ~l~~~~~l~l~~n~-i~~~~~-------~~~~~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~--~-  258 (384)
T d2omza2         195 KLTNLESLIATNNQ-ISDITP-------LGILTNLDELSLNGN-QLKDIG--T-LASLTNLTDLDLANN-QISNLA--P-  258 (384)
T ss_dssp             GCTTCSEEECCSSC-CCCCGG-------GGGCTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSS-CCCCCG--G-
T ss_pred             cccccceeeccCCc-cCCCCc-------ccccCCCCEEECCCC-CCCCcc--h-hhcccccchhccccC-ccCCCC--c-
Confidence            34667777776642 222110       234578888888886 333321  1 256788899988887 444321  2 


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      ...+++|++|+++++. ++.  +..+ ..++.++.+.+..+ .+.+  +. .+..+++++.|+++++ .+.+.  ..+..
T Consensus       259 ~~~~~~L~~L~l~~~~-l~~--~~~~-~~~~~l~~l~~~~n-~l~~--~~-~~~~~~~l~~L~ls~n-~l~~l--~~l~~  327 (384)
T d2omza2         259 LSGLTKLTELKLGANQ-ISN--ISPL-AGLTALTNLELNEN-QLED--IS-PISNLKNLTYLTLYFN-NISDI--SPVSS  327 (384)
T ss_dssp             GTTCTTCSEEECCSSC-CCC--CGGG-TTCTTCSEEECCSS-CCSC--CG-GGGGCTTCSEEECCSS-CCSCC--GGGGG
T ss_pred             ccccccCCEeeccCcc-cCC--CCcc-cccccccccccccc-cccc--cc-ccchhcccCeEECCCC-CCCCC--ccccc
Confidence            3457889999888753 332  1112 24678888888874 4433  22 2467899999999984 55542  34778


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCc
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAE  304 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  304 (313)
                      +++|++|++++| .+++  +..+.++++|++|++++| .+++...   +.++++|+.|+|++|
T Consensus       328 l~~L~~L~L~~n-~l~~--l~~l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 LTKLQRLFFANN-KVSD--VSSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSS-CCCC--CGGGGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCC-CCCC--ChhHcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCCC
Confidence            999999999999 6665  235788999999999998 6765432   357899999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=3e-10  Score=87.84  Aligned_cols=166  Identities=23%  Similarity=0.264  Sum_probs=118.4

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      .+|+.|++.++ .+.+.  .. ...+++|++|+++++ .+.+.  .. ...+++|+++.+.++. +++  +..+. .+++
T Consensus        41 ~~L~~L~l~~~-~i~~l--~~-l~~l~~L~~L~ls~n-~i~~~--~~-l~~l~~l~~l~~~~n~-~~~--i~~l~-~l~~  108 (227)
T d1h6ua2          41 DGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDN-QITDL--AP-LKNLTKITELELSGNP-LKN--VSAIA-GLQS  108 (227)
T ss_dssp             HTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCC--GG-GTTCCSCCEEECCSCC-CSC--CGGGT-TCTT
T ss_pred             CCcCEEECCCC-CCCcc--hh-HhcCCCCcEeecCCc-eeecc--cc-cccccccccccccccc-ccc--ccccc-cccc
Confidence            68999999987 34332  22 267999999999988 55432  12 3578999999999863 433  22333 4899


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.++++++......    .+...+.++.+.++++. +..  ...+..+++|++|.+++| .+++.  ..+.++++|++|
T Consensus       109 L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L  178 (227)
T d1h6ua2         109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQ-ITN--ISPLAGLTNLQYLSIGNA-QVSDL--TPLANLSKLTTL  178 (227)
T ss_dssp             CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSC-CCC--CGGGGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEE
T ss_pred             ccccccccccccccc----hhccccchhhhhchhhh-hch--hhhhcccccccccccccc-ccccc--hhhcccccceec
Confidence            999999986433221    13567889999998753 322  223567899999999998 45432  237789999999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++++| .+++..  . +..+|+|+.|++++|.
T Consensus       179 ~Ls~n-~l~~l~--~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         179 KADDN-KISDIS--P-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             ECCSS-CCCCCG--G-GGGCTTCCEEECTTSC
T ss_pred             ccCCC-ccCCCh--h-hcCCCCCCEEECcCCc
Confidence            99998 676532  2 4578999999999884

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=3.9e-10  Score=85.30  Aligned_cols=161  Identities=22%  Similarity=0.244  Sum_probs=112.3

Q ss_pred             cCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           83 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        83 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      +++++.|++.++. +++-  ..     ++.+++|+.|+++++ .+++..  . ...+++|++|+++++....-.   . .
T Consensus        39 l~~l~~L~l~~~~-i~~l--~~-----l~~l~nL~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~---~-l  102 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKSI--DG-----VEYLNNLTQINFSNN-QLTDIT--P-LKNLTKLVDILMNNNQIADIT---P-L  102 (199)
T ss_dssp             HTTCCEEECTTSC-CCCC--TT-----GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCG---G-G
T ss_pred             hcCCCEEECCCCC-CCCc--cc-----cccCCCcCcCccccc-cccCcc--c-ccCCccccccccccccccccc---c-c
Confidence            4788889988753 3321  11     346799999999997 444322  1 367899999999988333222   2 3


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|+.|+++++.......    ...+++|+.|+++++ .+..  +. .+..+++|+.|++.++ .+++  +..++.+
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~l~~--~~-~l~~~~~L~~L~l~~n-~l~~--l~~l~~l  171 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSN-TISD--IS-ALSGLTSLQQLNFSSN-QVTD--LKPLANL  171 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCC--CG-GGTTCTTCSEEECCSS-CCCC--CGGGTTC
T ss_pred             ccccccccccccccccccccc----cchhhhhHHhhhhhh-hhcc--cc-cccccccccccccccc-cccC--CccccCC
Confidence            568999999999875443222    235899999999985 4543  22 2467899999999985 4543  3357889


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      ++|++|++++| .+++-  ..++++++|++|
T Consensus       172 ~~L~~L~ls~N-~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         172 TTLERLDISSN-KVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             TTCCEEECCSS-CCCCC--GGGGGCTTCSEE
T ss_pred             CCCCEEECCCC-CCCCC--ccccCCCCCCcC
Confidence            99999999999 67762  347788888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=4.1e-10  Score=85.94  Aligned_cols=164  Identities=27%  Similarity=0.297  Sum_probs=113.8

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      ..++.|++.++. ++..  ..     ++.+++|+.|+++++ .+++..  .+ ..+++|+.|+++++ .+++.  .. ..
T Consensus        46 ~~L~~L~l~~~~-i~~l--~~-----l~~l~~L~~L~L~~n-~i~~l~--~~-~~l~~L~~L~l~~n-~i~~l--~~-l~  109 (210)
T d1h6ta2          46 NSIDQIIANNSD-IKSV--QG-----IQYLPNVTKLFLNGN-KLTDIK--PL-ANLKNLGWLFLDEN-KVKDL--SS-LK  109 (210)
T ss_dssp             HTCCEEECTTSC-CCCC--TT-----GGGCTTCCEEECCSS-CCCCCG--GG-TTCTTCCEEECCSS-CCCCG--GG-GT
T ss_pred             cCccEEECcCCC-CCCc--hh-----HhhCCCCCEEeCCCc-cccCcc--cc-ccCccccccccccc-ccccc--cc-cc
Confidence            567888887753 3221  11     245689999999986 444322  12 56889999999988 56542  22 35


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      .+++|+.|++.++.. ..  +..+ ..+++|+.+++.++ .+.+..   ....+++|+.++++++ .+.+  +..+..++
T Consensus       110 ~l~~L~~L~l~~~~~-~~--~~~l-~~l~~l~~l~~~~n-~l~~~~---~~~~l~~L~~l~l~~n-~l~~--i~~l~~l~  178 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGI-SD--INGL-VHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDN-QISD--IVPLAGLT  178 (210)
T ss_dssp             TCTTCCEEECTTSCC-CC--CGGG-GGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCC--CGGGTTCT
T ss_pred             ccccccccccccccc-cc--cccc-cccccccccccccc-cccccc---cccccccccccccccc-cccc--cccccCCC
Confidence            688999999998643 22  2222 34789999999884 555421   2467899999999985 4543  33477899


Q ss_pred             CCCEEecCCCCCCChHHHHHhhCCCCCceeeccC
Q 021374          244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTW  277 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  277 (313)
                      +|++|++++| .+++  +..++++++|++|+|++
T Consensus       179 ~L~~L~Ls~N-~i~~--l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         179 KLQNLYLSKN-HISD--LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCCEEECCSS-CCCB--CGGGTTCTTCSEEEEEE
T ss_pred             CCCEEECCCC-CCCC--ChhhcCCCCCCEEEccC
Confidence            9999999999 6765  34578899999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.9e-11  Score=86.62  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      .+|++|+|+++ .++..  +.+...+++|+.|+++++ .++.  +..+ ..+++|+.|+++++ .+.... ..++..+++
T Consensus        18 ~~lr~L~L~~n-~I~~i--~~~~~~l~~L~~L~Ls~N-~i~~--l~~~-~~l~~L~~L~ls~N-~i~~l~-~~~~~~l~~   88 (162)
T d1a9na_          18 VRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDN-EIRK--LDGF-PLLRRLKTLLVNNN-RICRIG-EGLDQALPD   88 (162)
T ss_dssp             TSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSS-CCCE--ECCC-CCCSSCCEEECCSS-CCCEEC-SCHHHHCTT
T ss_pred             CcCcEEECCCC-CCCcc--CccccccccCCEEECCCC-CCCc--cCCc-ccCcchhhhhcccc-cccCCC-ccccccccc
Confidence            45666666665 33321  122234555666666653 2332  1111 22455555555553 232200 011233445


Q ss_pred             CCEEEeCCCCCCCH-HHHHHhhcCCCCCEEecCCC
Q 021374          220 LRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGA  253 (313)
Q Consensus       220 L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~  253 (313)
                      |+.|+++++ .+.+ ..+..+..+++|++|++++|
T Consensus        89 L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          89 LTELILTNN-SLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cccceeccc-cccccccccccccccccchhhcCCC
Confidence            555555442 2221 11223344444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.97  E-value=8.7e-09  Score=75.25  Aligned_cols=120  Identities=13%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             HHHHHHhcCCCCcEEeccCCcccchHHHHHHHHh---CCCCcEEecCCCCCCCHHHHHH---HHhhCCCCCEEEeCCCCC
Q 021374          157 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN---YQELESLNLTRCVKLTDGGLQK---ILIKCSSLRSLNLYALSG  230 (313)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~  230 (313)
                      .+..+....|.|++|+++++..+++.++..+...   .++|++|++++| .+.+.+...   .+...+.|++|+++++ .
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-~   83 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-F   83 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-B
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-h
Confidence            3555555567777777766545666665555432   355777777663 555544332   2344566666666664 5


Q ss_pred             CCHHHHHHhh----cCCCCCEEecCCCC--CCChHHHHHh----hCCCCCceeeccCC
Q 021374          231 FTDEAYKKIS----LLAHLKFLDLCGAQ--NLSDEGLACI----AKCKNLVSLNLTWC  278 (313)
Q Consensus       231 ~~~~~~~~l~----~~~~L~~L~l~~~~--~~~~~~~~~l----~~~~~L~~L~l~~~  278 (313)
                      +++.+...+.    ..++|++|+++++.  .+.+.+...+    ...++|++|+++++
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            5555544332    44566666665542  2333333222    23566666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.92  E-value=3.7e-08  Score=71.81  Aligned_cols=119  Identities=16%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             HHHHHhcCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHH---HhhCCCCCEEEeCCCCCC
Q 021374          158 IQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLTDGGLQKI---LIKCSSLRSLNLYALSGF  231 (313)
Q Consensus       158 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~  231 (313)
                      +..+....|.|++|++++...+++.++..+..   ..++|++|++++| .+.+.+...+   +...++++.++++++ .+
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~   86 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FI   86 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc-cc
Confidence            44444555666666666654566666555544   3456666666663 5555444332   334455666666552 44


Q ss_pred             CHHHHHHh----hcCCCCCEEecCCCC-CCChHHHHHhh----CCCCCceeeccCC
Q 021374          232 TDEAYKKI----SLLAHLKFLDLCGAQ-NLSDEGLACIA----KCKNLVSLNLTWC  278 (313)
Q Consensus       232 ~~~~~~~l----~~~~~L~~L~l~~~~-~~~~~~~~~l~----~~~~L~~L~l~~~  278 (313)
                      .+.+...+    ...++|+.+.|+.+. .+++.+...++    .+++|++|+++++
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            44443332    244555554443221 44444433332    3555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.8e-11  Score=96.18  Aligned_cols=182  Identities=19%  Similarity=0.168  Sum_probs=122.6

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      ++++.|+|+++ .++...... +..+++|++|+|+++ .++..  .. ...+++|++|+++++ .++.  .......+++
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~-f~~l~~L~~L~L~~N-~l~~l--~~-~~~l~~L~~L~Ls~N-~l~~--~~~~~~~l~~  101 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLAT-LMPYTRLTQLNLDRA-ELTKL--QV-DGTLPVLGTLDLSHN-QLQS--LPLLGQTLPA  101 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGG-GTTCTTCCEEECTTS-CCCEE--EC-CSCCTTCCEEECCSS-CCSS--CCCCTTTCTT
T ss_pred             cCCCEEECcCC-cCCCcCHHH-hhccccccccccccc-ccccc--cc-ccccccccccccccc-cccc--cccccccccc
Confidence            47899999885 444332222 256899999999988 66532  11 235789999999986 3433  1223345789


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.... ......+++++.|.++++ .+.......+..+++|+.+++++| .++......+..+++|++|
T Consensus       102 L~~L~l~~~-~~~~~~-~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L  177 (266)
T d1p9ag_         102 LTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTL  177 (266)
T ss_dssp             CCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEE
T ss_pred             ccccccccc-ccceee-cccccccccccccccccc-ccceeccccccccccchhcccccc-cccccCcccccccccccee
Confidence            999999885 332211 112356788999999874 443333334556889999999998 6665544556778999999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCcccccccc
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNCCSCS  311 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  311 (313)
                      +|++| .++... ..++ ..++|+.|+|++|.--|.|+
T Consensus       178 ~Ls~N-~L~~lp-~~~~-~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         178 LLQEN-SLYTIP-KGFF-GSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             ECCSS-CCCCCC-TTTT-TTCCCSEEECCSCCBCCSGG
T ss_pred             ecccC-CCcccC-hhHC-CCCCCCEEEecCCCCCCCcc
Confidence            99988 565321 1222 47889999999998777875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.2e-11  Score=94.73  Aligned_cols=181  Identities=20%  Similarity=0.169  Sum_probs=121.1

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      .+++.|+|+++ .++...... ...+++|++|+++++ .+...... .....+.++++.+.....++...... ...+++
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~ls~n-~l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~l~~  106 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGR  106 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTT
T ss_pred             CCCCEEECcCC-cCCCCCHHH-hhccccccccccccc-cccccccc-cccccccccccccccccccccccchh-hccccc
Confidence            57899999986 454433222 356799999999987 44432211 12346788888776544443322222 235799


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |+.|+++++ .+.... ......+++|+.+++++. .++......+..+++|++|++++| .++......+.++++|+++
T Consensus       107 L~~L~l~~n-~~~~~~-~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         107 LHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             CCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred             CCEEecCCc-cccccc-ccccchhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccchhhhccccccchh
Confidence            999999985 332211 123456789999999883 454433445677889999999999 6665434457789999999


Q ss_pred             eccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          274 NLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       274 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      ++++| .++..... .+..+++|+.|++++|.
T Consensus       183 ~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         183 LLHQN-RVAHVHPH-AFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             ECCSS-CCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             hhhhc-cccccChh-Hhhhhhhcccccccccc
Confidence            99998 66654333 34578999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.84  E-value=3.3e-10  Score=91.72  Aligned_cols=132  Identities=17%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcC
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLL  242 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  242 (313)
                      ..+++|+.+++.++. +....    ...+++|+.|++.++ ..... ....+..+++++.|.++++ .+.......+..+
T Consensus       147 ~~l~~L~~l~l~~n~-l~~l~----~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l  218 (305)
T d1xkua_         147 QGMKKLSYIRIADTN-ITTIP----QGLPPSLTELHLDGN-KITKV-DAASLKGLNNLAKLGLSFN-SISAVDNGSLANT  218 (305)
T ss_dssp             GGCTTCCEEECCSSC-CCSCC----SSCCTTCSEEECTTS-CCCEE-CTGGGTTCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred             ccccccCccccccCC-ccccC----cccCCccCEEECCCC-cCCCC-ChhHhhccccccccccccc-ccccccccccccc
Confidence            345667777776642 22210    012467777777774 33221 1123456778888888774 4554444556678


Q ss_pred             CCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHH-----HHHhCCCccEeecCCcc
Q 021374          243 AHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMA-----IAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       243 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----l~~~~~~L~~L~l~~~~  305 (313)
                      ++|++|+|++| .++.- ...+.++++|++|++++| .++...-..     .....++|+.|++++|.
T Consensus       219 ~~L~~L~L~~N-~L~~l-p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         219 PHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             TTCCEEECCSS-CCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccceeeecccc-ccccc-ccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            88999999888 45432 234677889999999887 565432111     12345688888888874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.81  E-value=1.2e-07  Score=68.98  Aligned_cols=94  Identities=23%  Similarity=0.265  Sum_probs=43.9

Q ss_pred             HHHHHhcCCCCcEEEecCCcccCHHHHHHHHh---cCCCCcEEeccCCcccchHHHHHHH---HhCCCCcEEecCCCCCC
Q 021374          132 IEIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRCVKL  205 (313)
Q Consensus       132 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~  205 (313)
                      +..+....++|++|+|+++..+++.++..++.   ..+.|++|+++++ .+++.+...++   ...++|++|++++| .+
T Consensus         7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i   84 (167)
T d1pgva_           7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FL   84 (167)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred             HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-hc
Confidence            33444445555555555443455554443322   2344555555554 34444333222   12355555555553 45


Q ss_pred             CHHHHHHHHhh---CCCCCEEEeCC
Q 021374          206 TDGGLQKILIK---CSSLRSLNLYA  227 (313)
Q Consensus       206 ~~~~~~~~~~~---~~~L~~L~l~~  227 (313)
                      .+.++..+...   .++|++|++++
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCC
Confidence            55454443332   24455555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=6.6e-10  Score=76.97  Aligned_cols=102  Identities=22%  Similarity=0.255  Sum_probs=65.0

Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh-HHHHHhhCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSD-EGLACIAKCK  268 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~  268 (313)
                      .+++|++|++++ +.+..  ++..+..+++|+.|++++. .++.  +..++.+++|++|++++| .+++ ..+..+..++
T Consensus        18 ~l~~L~~L~ls~-N~l~~--lp~~~~~l~~L~~L~l~~N-~i~~--l~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          18 QLLLVTHLDLSH-NRLRA--LPPALAALRCLEVLQASDN-ALEN--VDGVANLPRLQELLLCNN-RLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGTTCCEEECCS-SCCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCT
T ss_pred             cCCCCCEEECCC-CccCc--chhhhhhhhcccccccccc-cccc--cCccccccccCeEECCCC-ccCCCCCchhhcCCC
Confidence            356777777776 45543  2222456777777777773 4443  234677888888888888 4543 2334567788


Q ss_pred             CCceeeccCCCCCChH--HHHHHHHhCCCccEe
Q 021374          269 NLVSLNLTWCVRITDV--GVMAIAEGCSSLEFL  299 (313)
Q Consensus       269 ~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L  299 (313)
                      +|++|+++++ .+++.  ....+...+|+|+.|
T Consensus        91 ~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          91 RLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            8888888887 44432  134566667888776

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=4.2e-10  Score=74.70  Aligned_cols=47  Identities=23%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             CCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeecccc
Q 021374           20 ETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLRE   66 (313)
Q Consensus        20 ~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~~   66 (313)
                      .+|+|++.+||+||++.|++++++||++|++++..++.+|+.+.+..
T Consensus         8 ~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           8 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            55668999999999999999999999999998777899999876543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=1.3e-08  Score=84.62  Aligned_cols=167  Identities=22%  Similarity=0.272  Sum_probs=119.3

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      ..++++.++++++. +++..       .+..+++|+.++++++. +....  . ...+++|++|+++++ .+...  .. 
T Consensus       217 ~~~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~l~~n~-l~~~~--~-~~~~~~L~~L~l~~~-~l~~~--~~-  280 (384)
T d2omza2         217 ILTNLDELSLNGNQ-LKDIG-------TLASLTNLTDLDLANNQ-ISNLA--P-LSGLTKLTELKLGAN-QISNI--SP-  280 (384)
T ss_dssp             GCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSS-CCCCC--GG-
T ss_pred             ccCCCCEEECCCCC-CCCcc-------hhhcccccchhccccCc-cCCCC--c-ccccccCCEeeccCc-ccCCC--Cc-
Confidence            46789999999864 33321       13566999999999874 33322  1 266899999999887 44321  11 


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhc
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISL  241 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  241 (313)
                      ...++.++.+.+..+ .+++  +.. ...+++++.|+++++ .+.+  +.. +..+++|+.|+++++ .+++  +..++.
T Consensus       281 ~~~~~~l~~l~~~~n-~l~~--~~~-~~~~~~l~~L~ls~n-~l~~--l~~-l~~l~~L~~L~L~~n-~l~~--l~~l~~  349 (384)
T d2omza2         281 LAGLTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFN-NISD--ISP-VSSLTKLQRLFFANN-KVSD--VSSLAN  349 (384)
T ss_dssp             GTTCTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSS-CCSC--CGG-GGGCTTCCEEECCSS-CCCC--CGGGGG
T ss_pred             ccccccccccccccc-cccc--ccc-cchhcccCeEECCCC-CCCC--Ccc-cccCCCCCEEECCCC-CCCC--ChhHcC
Confidence            246788999999885 3433  222 245899999999994 5654  222 578999999999996 5554  335788


Q ss_pred             CCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          242 LAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      +++|++|++++| .+++-  ..+.++++|+.|+|+++
T Consensus       350 l~~L~~L~l~~N-~l~~l--~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         350 LTNINWLSAGHN-QISDL--TPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSS-CCCBC--GGGTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCC-cCCCC--hhhccCCCCCEeeCCCC
Confidence            999999999999 66653  23788999999999875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.75  E-value=3e-07  Score=66.79  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             HHHHhcCCCCcEEEecCCcccCHHHHHHHHh---cCCCCcEEeccCCcccchHHHHHHHH---hCCCCcEEecCCCCCCC
Q 021374          133 EIISSTCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRCVKLT  206 (313)
Q Consensus       133 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~  206 (313)
                      ..+....|+|++|++.+...+++.++..++.   ..++|++|+++++ .+++.+...+..   ..++++.+++.++ .+.
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~   87 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FIS   87 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc-ccc
Confidence            3344444555555555543455555444433   3455666666654 444444433322   3456666666653 555


Q ss_pred             HHHHHHHHh---hCCCCCEEEeCCC-CCCCHHHHHHh----hcCCCCCEEecCCC
Q 021374          207 DGGLQKILI---KCSSLRSLNLYAL-SGFTDEAYKKI----SLLAHLKFLDLCGA  253 (313)
Q Consensus       207 ~~~~~~~~~---~~~~L~~L~l~~~-~~~~~~~~~~l----~~~~~L~~L~l~~~  253 (313)
                      +.++..+..   ..++|+.++++.+ ..+.+.+...+    ...++|++|+++.+
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            555444432   3355666555432 24455444333    25666777766544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.8e-10  Score=79.96  Aligned_cols=129  Identities=15%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      ++.++++|+++++ .++.  ++.+...+++|+.|++++ +.+..  +.. +..+++|+.|+++++ .+.......+..++
T Consensus        16 n~~~lr~L~L~~n-~I~~--i~~~~~~l~~L~~L~Ls~-N~i~~--l~~-~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~   87 (162)
T d1a9na_          16 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSD-NEIRK--LDG-FPLLRRLKTLLVNNN-RICRIGEGLDQALP   87 (162)
T ss_dssp             CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCS-SCCCE--ECC-CCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             CcCcCcEEECCCC-CCCc--cCccccccccCCEEECCC-CCCCc--cCC-cccCcchhhhhcccc-cccCCCcccccccc
Confidence            4568999999996 4544  233445689999999999 46664  221 467899999999995 45543333345789


Q ss_pred             CCCEEecCCCCCCCh-HHHHHhhCCCCCceeeccCCCCCChHH--HHHHHHhCCCccEeecC
Q 021374          244 HLKFLDLCGAQNLSD-EGLACIAKCKNLVSLNLTWCVRITDVG--VMAIAEGCSSLEFLSSG  302 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~  302 (313)
                      +|++|++++| .+++ ..+..+..+++|++|++++| .++...  ...+...+|+|+.||-.
T Consensus        88 ~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          88 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccceeccc-cccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence            9999999999 5544 33456788999999999999 454322  23355679999999743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.73  E-value=2.4e-10  Score=86.21  Aligned_cols=129  Identities=20%  Similarity=0.228  Sum_probs=70.3

Q ss_pred             CCCCCCcEEecCCCC-CCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHH
Q 021374          111 GSLQDLESLNLNGCQ-KISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD  189 (313)
Q Consensus       111 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~  189 (313)
                      .....++.+++.+.. .+.  .+..-...+++|++|+++++ .+++.  .. ...+++|+.|+++++ .+++  ++.+..
T Consensus        20 ~~~~~~~~~~l~~~~~~i~--~l~~sl~~L~~L~~L~Ls~n-~I~~i--~~-l~~l~~L~~L~Ls~N-~i~~--i~~~~~   90 (198)
T d1m9la_          20 VVATEAEKVELHGMIPPIE--KMDATLSTLKACKHLALSTN-NIEKI--SS-LSGMENLRILSLGRN-LIKK--IENLDA   90 (198)
T ss_dssp             CCCTTCSCEECCBCCTTCC--CCHHHHHHTTTCCEEECSEE-EESCC--CC-HHHHTTCCEEECCEE-EECS--CSSHHH
T ss_pred             CcccccceeeeecccCchh--hhhhHHhcccccceeECccc-CCCCc--cc-ccCCccccChhhccc-cccc--cccccc
Confidence            344556677776521 111  11122356778888888876 45432  12 234677888888775 3433  112222


Q ss_pred             hCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCH-HHHHHhhcCCCCCEEecCCC
Q 021374          190 NYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGA  253 (313)
Q Consensus       190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~  253 (313)
                      .+++|+.|+++++ .++.  +.. +..+++|+.|+++++ .+++ ..+..+..+++|++|++++|
T Consensus        91 ~~~~L~~L~l~~N-~i~~--l~~-~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          91 VADTLEELWISYN-QIAS--LSG-IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHCCEEECSEE-ECCC--HHH-HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccccccc-cccc--ccc-ccccccccccccccc-hhccccccccccCCCccceeecCCC
Confidence            2456777777773 4543  222 345566777777663 3333 23445666777777777666

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.69  E-value=1.2e-11  Score=100.78  Aligned_cols=207  Identities=12%  Similarity=0.135  Sum_probs=109.8

Q ss_pred             ccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHH
Q 021374           82 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  161 (313)
Q Consensus        82 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  161 (313)
                      .+++|+.|+++++..+......     .+.++++|++|+++++. +..... ......++|+.++++.+. .... +...
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~-----~i~~L~~L~~L~Ls~N~-l~~~~~-~~~~~~~~L~~l~l~~N~-~~~~-~p~~  144 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHYLYITHTN-VSGAIP-DFLSQIKTLVTLDFSYNA-LSGT-LPPS  144 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCG-----GGGGCTTCSEEEEEEEC-CEEECC-GGGGGCTTCCEEECCSSE-EESC-CCGG
T ss_pred             cCcccccccccccccccccccc-----ccccccccchhhhcccc-cccccc-ccccchhhhccccccccc-cccc-Cchh
Confidence            5678888888754333321111     13466788888887752 222111 122456777777777652 2111 1112


Q ss_pred             HhcCCCCcEEeccCCcccchHHHHHHHHhCCC-CcEEecCCCCCCCHH----------------------HHHHHHhhCC
Q 021374          162 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE-LESLNLTRCVKLTDG----------------------GLQKILIKCS  218 (313)
Q Consensus       162 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~----------------------~~~~~~~~~~  218 (313)
                      ...++.|+.++++++. +.......+. .+.+ ++.+.+.++ .+...                      .+......++
T Consensus       145 l~~l~~L~~l~l~~n~-l~~~ip~~~~-~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~  221 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             GGGCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTS
T ss_pred             hccCcccceeeccccc-cccccccccc-cccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            3456777777777642 2211111111 1222 244544432 11100                      0111223456


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                      +++.+++.++. +... +..+..+++|++|++++| .++......++++++|++|+|++| .+++... .+ ..+++|+.
T Consensus       222 ~l~~l~~~~~~-l~~~-~~~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP-~~-~~L~~L~~  295 (313)
T d1ogqa_         222 NTQKIHLAKNS-LAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIP-QG-GNLQRFDV  295 (313)
T ss_dssp             CCSEEECCSSE-ECCB-GGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSS-EEEEECC-CS-TTGGGSCG
T ss_pred             ccccccccccc-cccc-ccccccccccccccCccC-eecccCChHHhCCCCCCEEECcCC-cccccCC-Cc-ccCCCCCH
Confidence            77777777642 2221 234556788888888888 566544456778888999998887 5543211 11 24567777


Q ss_pred             eecCCccc
Q 021374          299 LSSGAEMN  306 (313)
Q Consensus       299 L~l~~~~~  306 (313)
                      +++.+|..
T Consensus       296 l~l~~N~~  303 (313)
T d1ogqa_         296 SAYANNKC  303 (313)
T ss_dssp             GGTCSSSE
T ss_pred             HHhCCCcc
Confidence            88887753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.68  E-value=9.3e-10  Score=82.92  Aligned_cols=36  Identities=25%  Similarity=0.232  Sum_probs=15.3

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYA  227 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  227 (313)
                      +++|+.|++++ +.+.+......+..+++|+.|++++
T Consensus       114 l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             ccccccccccc-chhccccccccccCCCccceeecCC
Confidence            44555555554 2333211111234455555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.68  E-value=5.3e-10  Score=84.05  Aligned_cols=110  Identities=24%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             CCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCC
Q 021374          166 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHL  245 (313)
Q Consensus       166 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  245 (313)
                      +++++|++++. .++..........+++|+.|+++++ .+... ....+..+++|+.|++++ ..+.......+..+++|
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~-~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTC
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeecccc-ccccc-cccccccccccceeeecc-ccccccCHHHHhCCCcc
Confidence            57888998884 4432111222244788888888873 44321 112345678888888887 35554444456778888


Q ss_pred             CEEecCCCCCCChHHHHHhhCCCCCceeeccCCCC
Q 021374          246 KFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVR  280 (313)
Q Consensus       246 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  280 (313)
                      ++|+|++| .++.-....+..+++|++|++++++.
T Consensus       105 ~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccCCc-cccccCHHHhcCCccccccccccccc
Confidence            88888888 56544334466778888888887743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.67  E-value=1.5e-09  Score=87.71  Aligned_cols=132  Identities=14%  Similarity=0.071  Sum_probs=85.7

Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      ....+..+...................+++|+.+++.++ .+..  +.  ...+++|+.|+++++ .........+..++
T Consensus       122 ~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~--l~--~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~  195 (305)
T d1xkua_         122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITT--IP--QGLPPSLTELHLDGN-KITKVDAASLKGLN  195 (305)
T ss_dssp             TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCS--CC--SSCCTTCSEEECTTS-CCCEECTGGGTTCT
T ss_pred             ccccccccccccccccccCCCccccccccccCccccccC-Cccc--cC--cccCCccCEEECCCC-cCCCCChhHhhccc
Confidence            345566666654322211111122334688899998885 3332  11  123578999999874 44444445667889


Q ss_pred             CCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCCcc
Q 021374          244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGAEM  305 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  305 (313)
                      .+++|++++| .++......+.++++|++|++++| .++... .. +..+++|+.|++++|.
T Consensus       196 ~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp-~~-l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         196 NLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVP-GG-LADHKYIQVVYLHNNN  253 (305)
T ss_dssp             TCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCC-TT-TTTCSSCCEEECCSSC
T ss_pred             cccccccccc-cccccccccccccccceeeecccc-cccccc-cc-cccccCCCEEECCCCc
Confidence            9999999998 666654456778999999999998 665321 12 3468999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.60  E-value=9e-11  Score=95.53  Aligned_cols=205  Identities=16%  Similarity=0.139  Sum_probs=124.1

Q ss_pred             CCcCeeeccCCccCchH-HHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHH
Q 021374           84 RHVREINLEFAQDIEDR-HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  162 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  162 (313)
                      .+++.|+++++. +... .+    ...++++++|++|+|+++..+....... ...+++|++|+|+++ .+.... ....
T Consensus        50 ~~v~~L~L~~~~-l~g~~~l----p~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~-~~~~  121 (313)
T d1ogqa_          50 YRVNNLDLSGLN-LPKPYPI----PSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAI-PDFL  121 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEEC----CGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEEC-CGGG
T ss_pred             EEEEEEECCCCC-CCCCCCC----ChHHhcCccccccccccccccccccccc-cccccccchhhhccc-cccccc-cccc
Confidence            357888888753 2211 00    0114577999999998754443221122 367899999999987 443221 1223


Q ss_pred             hcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCC-CEEEeCCCCCCCH--------
Q 021374          163 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSL-RSLNLYALSGFTD--------  233 (313)
Q Consensus       163 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~--------  233 (313)
                      ...+.|+.++++.+.. ... ++.....+++|+.++++++ .+... ++..+..+.++ +.+.++++ .++.        
T Consensus       122 ~~~~~L~~l~l~~N~~-~~~-~p~~l~~l~~L~~l~l~~n-~l~~~-ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~  196 (313)
T d1ogqa_         122 SQIKTLVTLDFSYNAL-SGT-LPPSISSLPNLVGITFDGN-RISGA-IPDSYGSFSKLFTSMTISRN-RLTGKIPPTFAN  196 (313)
T ss_dssp             GGCTTCCEEECCSSEE-ESC-CCGGGGGCTTCCEEECCSS-CCEEE-CCGGGGCCCTTCCEEECCSS-EEEEECCGGGGG
T ss_pred             cchhhhcccccccccc-ccc-CchhhccCcccceeecccc-ccccc-cccccccccccccccccccc-cccccccccccc
Confidence            5678999999988532 221 2222345899999999984 43321 11223344443 55655542 1110        


Q ss_pred             ---------------HHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          234 ---------------EAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       234 ---------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                                     .....+..+++++.+++.++ .++.. +..+..+++|+.|++++| .+++.....+ ..+++|+.
T Consensus       197 l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~-~~~~~~~~~L~~L~Ls~N-~l~g~iP~~l-~~L~~L~~  272 (313)
T d1ogqa_         197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGL-TQLKFLHS  272 (313)
T ss_dssp             CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCB-GGGCCCCTTCCEEECCSS-CCEECCCGGG-GGCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccc-ccccccccccccccCccC-eecccCChHH-hCCCCCCE
Confidence                           11122335678999999888 44433 234667899999999998 6665433333 36899999


Q ss_pred             eecCCcc
Q 021374          299 LSSGAEM  305 (313)
Q Consensus       299 L~l~~~~  305 (313)
                      |+|++|.
T Consensus       273 L~Ls~N~  279 (313)
T d1ogqa_         273 LNVSFNN  279 (313)
T ss_dssp             EECCSSE
T ss_pred             EECcCCc
Confidence            9999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=2.5e-09  Score=80.30  Aligned_cols=160  Identities=17%  Similarity=0.148  Sum_probs=97.0

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSS  219 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  219 (313)
                      +++++|+|+++ .++.......+..+++|++|++++. .+...... ....+++|+.|++++ +.+..-. ...+.++++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~-~~~~~~~L~~L~Ls~-N~l~~l~-~~~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGE-NKIKEIS-NKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCS-CCCCEEC-SSSSTTCTT
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeecccc-cccccccc-ccccccccceeeecc-ccccccC-HHHHhCCCc
Confidence            58999999988 5543222223356899999999985 34332222 223478999999999 4665411 123578899


Q ss_pred             CCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEe
Q 021374          220 LRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFL  299 (313)
Q Consensus       220 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L  299 (313)
                      |+.|++++ ..+.......+..+++|++|+|++|+...+.....+..  .++.+.+... .++-..    ...+..++.+
T Consensus       104 L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~--~l~~~~l~~~-~~~c~~----p~~l~~~~l~  175 (192)
T d1w8aa_         104 LKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGG-AARCGA----PSKVRDVQIK  175 (192)
T ss_dssp             CCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGG-GCBBCS----STTTTTSBGG
T ss_pred             ccccccCC-ccccccCHHHhcCCcccccccccccccccccchHHHhh--hhhhhcccCC-CeEeCC----ChhhcCCEee
Confidence            99999998 46665445566788999999999996544433333321  1223333322 111111    1134456667


Q ss_pred             ecCCccccccccC
Q 021374          300 SSGAEMNCCSCSH  312 (313)
Q Consensus       300 ~l~~~~~~~~~~~  312 (313)
                      +++.+.--|.+++
T Consensus       176 ~L~~n~l~C~~~~  188 (192)
T d1w8aa_         176 DLPHSEFKCSSEN  188 (192)
T ss_dssp             GSCTTTCCCCCC-
T ss_pred             ecCHhhCcCCCCC
Confidence            7777765555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.5e-08  Score=69.90  Aligned_cols=103  Identities=20%  Similarity=0.209  Sum_probs=75.4

Q ss_pred             cEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceee
Q 021374          195 ESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLN  274 (313)
Q Consensus       195 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  274 (313)
                      +.|++++ +.++.  +.. +..+++|++|++++. .+... ...++.+++|++|++++| .++.-  ..++++++|++|+
T Consensus         1 R~L~Ls~-n~l~~--l~~-l~~l~~L~~L~ls~N-~l~~l-p~~~~~l~~L~~L~l~~N-~i~~l--~~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAH-KDLTV--LCH-LEQLLLVTHLDLSHN-RLRAL-PPALAALRCLEVLQASDN-ALENV--DGVANLPRLQELL   71 (124)
T ss_dssp             SEEECTT-SCCSS--CCC-GGGGTTCCEEECCSS-CCCCC-CGGGGGCTTCCEEECCSS-CCCCC--GGGTTCSSCCEEE
T ss_pred             CEEEcCC-CCCCC--Ccc-cccCCCCCEEECCCC-ccCcc-hhhhhhhhcccccccccc-ccccc--CccccccccCeEE
Confidence            4677877 45553  222 477899999999984 55532 235778999999999999 56542  3578899999999


Q ss_pred             ccCCCCCChHHHHHHHHhCCCccEeecCCcccc
Q 021374          275 LTWCVRITDVGVMAIAEGCSSLEFLSSGAEMNC  307 (313)
Q Consensus       275 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  307 (313)
                      +++| .+++......+..+|+|+.|++++|.-+
T Consensus        72 l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          72 LCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCC-ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            9998 6665432222357999999999998644

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.6e-08  Score=66.13  Aligned_cols=48  Identities=8%  Similarity=0.064  Sum_probs=39.7

Q ss_pred             cccccCCchHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeec
Q 021374           15 ETWSKETVPKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVID   63 (313)
Q Consensus        15 ~~~~~~~~peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~   63 (313)
                      .++...+|+||+.+||+||+++|+++++.|||+|+.+ +.++.+|+.+.
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l-~~~~~lW~~~~   63 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL-AEDNLLWREKC   63 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH-HTCSHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HCCHHHHHHHH
Confidence            3444345558999999999999999999999999997 57889998653

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.3e-08  Score=67.47  Aligned_cols=42  Identities=19%  Similarity=0.179  Sum_probs=37.6

Q ss_pred             hHHHHHHHcCCCccchhHHhhccHHHHHHHccCCCcceeeccc
Q 021374           23 PKVIRIMSTRLSQRDIISLLLVSPWLHRTLVSYPSLWLVIDLR   65 (313)
Q Consensus        23 peiL~~If~~L~~~~l~~~~~v~~~w~~~~~~~~~~~~~l~~~   65 (313)
                      |||+.+||+||++.|++++++|||+|+.+ +.++.+|+.+...
T Consensus        20 ~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l-~~d~~lWk~~~~~   61 (118)
T d1p22a1          20 DHIAENILSYLDAKSLCAAELVCKEWYRV-TSDGMLWKKLIER   61 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHCHHHHHH-HHHTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHh
Confidence            48999999999999999999999999987 5789999977543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.2e-08  Score=70.60  Aligned_cols=84  Identities=20%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCC
Q 021374          191 YQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNL  270 (313)
Q Consensus       191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  270 (313)
                      +++|++|++.+.+.+..-.. ..+.++++|+.|+++++ .+......++..+++|++|+|++| .++.-....+ ...+|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~~~l  105 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV-QGLSL  105 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT-CSCCC
T ss_pred             ccccCeeecCCCccccccCc-hhhccccccCcceeecc-ccCCcccccccccccccceeccCC-CCcccChhhh-ccccc
Confidence            45666666654333332111 11345566666666652 444433444555666666666666 3332111111 22356


Q ss_pred             ceeeccCC
Q 021374          271 VSLNLTWC  278 (313)
Q Consensus       271 ~~L~l~~~  278 (313)
                      ++|+|++|
T Consensus       106 ~~L~L~~N  113 (156)
T d2ifga3         106 QELVLSGN  113 (156)
T ss_dssp             CEEECCSS
T ss_pred             cccccCCC
Confidence            66666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.4e-09  Score=82.62  Aligned_cols=206  Identities=14%  Similarity=0.070  Sum_probs=108.5

Q ss_pred             CCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHh
Q 021374           84 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  163 (313)
Q Consensus        84 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  163 (313)
                      +++++|+++++. ++.     +....+.++++|+.|+++++........ .....+++++++.+..+..+..... ..+.
T Consensus        29 ~~l~~L~Ls~n~-i~~-----l~~~~f~~l~~L~~L~ls~n~~~~~i~~-~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~  100 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINP-EAFQ  100 (242)
T ss_dssp             SCCSEEEEESCC-CCE-----ECTTTTTTCTTCCEEEEESCTTCCEECS-SSEESCTTCCEEEEECCTTCCEECT-TSEE
T ss_pred             CCCCEEECcCCc-CCc-----cChhHhhccchhhhhhhccccccceeec-ccccccccccccccccccccccccc-cccc
Confidence            578999998753 332     1111245679999999988643222111 1124578889988876534433221 2235


Q ss_pred             cCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCC
Q 021374          164 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLA  243 (313)
Q Consensus       164 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  243 (313)
                      .+++|++|.+.++ .+...........++.+..+...+ ..+.......+......++.|++.+ ..+..... .....+
T Consensus       101 ~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~-~~~~~~  176 (242)
T d1xwdc1         101 NLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNK-NGIQEIHN-CAFNGT  176 (242)
T ss_dssp             CCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCS-SCCCEECT-TTTTTC
T ss_pred             ccccccccccchh-hhcccccccccccccccccccccc-cccccccccccccccccceeeeccc-cccccccc-ccccch
Confidence            6789999999885 343321111111233444444443 2332211111111224677888876 34432211 122345


Q ss_pred             CCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccEeecCC
Q 021374          244 HLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEFLSSGA  303 (313)
Q Consensus       244 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  303 (313)
                      +++.+....+..++.-....+.++++|++|+++++ .++..... .++.+++|+.+++.+
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY-GLENLKKLRARSTYN  234 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSS-SCTTCCEEESSSEES
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHH-HHcCCcccccCcCCC
Confidence            66666543433565433334678899999999988 56533221 233455555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=6.8e-09  Score=80.82  Aligned_cols=184  Identities=11%  Similarity=0.097  Sum_probs=102.2

Q ss_pred             ccccCCcCeeeccCCccCchHHHHHHHHHhcCCCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHH
Q 021374           80 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ  159 (313)
Q Consensus        80 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  159 (313)
                      +..+++|+.|+++++.....     +....+..+++++++.+..+..+...... ....+++|+.|++.++ .+......
T Consensus        49 f~~l~~L~~L~ls~n~~~~~-----i~~~~f~~l~~l~~l~~~~~n~l~~~~~~-~~~~l~~L~~l~l~~~-~l~~~~~~  121 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEV-----IEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNT-GIKHLPDV  121 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCE-----ECSSSEESCTTCCEEEEECCTTCCEECTT-SEECCTTCCEEEEESC-CCCSCCCC
T ss_pred             hhccchhhhhhhccccccce-----eeccccccccccccccccccccccccccc-cccccccccccccchh-hhcccccc
Confidence            45678999999988643221     11111345688999988765444433222 2366899999999987 44432111


Q ss_pred             HHHhcCCCCcEE---eccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHH
Q 021374          160 HLVKNCKHIIDL---NLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAY  236 (313)
Q Consensus       160 ~~~~~~~~L~~L---~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  236 (313)
                         ..+..++.+   ...+ ..+.......+......++.|++.+ +.+..  +.......++++.+.......++....
T Consensus       122 ---~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~--i~~~~~~~~~l~~~~~l~~n~l~~l~~  194 (242)
T d1xwdc1         122 ---HKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNK-NGIQE--IHNCAFNGTQLDELNLSDNNNLEELPN  194 (242)
T ss_dssp             ---TTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCS-SCCCE--ECTTTTTTCCEEEEECTTCTTCCCCCT
T ss_pred             ---cccccccccccccccc-cccccccccccccccccceeeeccc-ccccc--cccccccchhhhccccccccccccccH
Confidence               123344444   3333 1222211111222124788899887 45543  111112346666666544345544333


Q ss_pred             HHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCC
Q 021374          237 KKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWC  278 (313)
Q Consensus       237 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  278 (313)
                      ..+..+++|++|++++| .++.-....+.++++|+.+++.+.
T Consensus       195 ~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         195 DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TTTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSEESS
T ss_pred             HHhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcCCCC
Confidence            44678899999999998 465432233556677777766544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.5e-05  Score=57.20  Aligned_cols=83  Identities=27%  Similarity=0.165  Sum_probs=42.0

Q ss_pred             hhCCCCCEEEeCCCCCCCHH--HHHHhhcCCCCCEEecCCCCCCCh-HHHHHhhCCCCCceeeccCCCCCC-----hHHH
Q 021374          215 IKCSSLRSLNLYALSGFTDE--AYKKISLLAHLKFLDLCGAQNLSD-EGLACIAKCKNLVSLNLTWCVRIT-----DVGV  286 (313)
Q Consensus       215 ~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~  286 (313)
                      ..+++|+.|+++++ .++..  ....+..+++|+.|++++| .+++ ..+..+ +..+|+.|++++|+-..     ..-.
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhh-hccccceeecCCCCcCcCcccchhHH
Confidence            34555555555552 23221  1122345667777777776 4443 222222 33457777777763211     1224


Q ss_pred             HHHHHhCCCccEee
Q 021374          287 MAIAEGCSSLEFLS  300 (313)
Q Consensus       287 ~~l~~~~~~L~~L~  300 (313)
                      ..+.+.+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            45566677777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=1.5e-05  Score=56.71  Aligned_cols=90  Identities=18%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCc
Q 021374          217 CSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSL  296 (313)
Q Consensus       217 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  296 (313)
                      .++|++|++.+...++......+..+++|+.|++++| .++......+..+++|++|+|++| .++..... .+ ...+|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~-~~-~~~~l  105 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK-TV-QGLSL  105 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCST-TT-CSCCC
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCC-CCcccChh-hh-ccccc
Confidence            3455555554322333322333444555555555555 343322233444555555555554 33221111 11 12245


Q ss_pred             cEeecCCccccccc
Q 021374          297 EFLSSGAEMNCCSC  310 (313)
Q Consensus       297 ~~L~l~~~~~~~~~  310 (313)
                      +.|+|++|.--|.|
T Consensus       106 ~~L~L~~Np~~C~C  119 (156)
T d2ifga3         106 QELVLSGNPLHCSC  119 (156)
T ss_dssp             CEEECCSSCCCCCG
T ss_pred             cccccCCCcccCCc
Confidence            55555555444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00011  Score=52.38  Aligned_cols=83  Identities=28%  Similarity=0.293  Sum_probs=39.3

Q ss_pred             HhCCCCcEEecCCCCCCCH-HHHHHHHhhCCCCCEEEeCCCCCCCH-HHHHHhhcCCCCCEEecCCCCCCCh----H-HH
Q 021374          189 DNYQELESLNLTRCVKLTD-GGLQKILIKCSSLRSLNLYALSGFTD-EAYKKISLLAHLKFLDLCGAQNLSD----E-GL  261 (313)
Q Consensus       189 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~----~-~~  261 (313)
                      ..+++|+.|++++ +.++. .++...+..+++|+.|++++. .+.+ .....+. ..+|+.|++.+|+....    . -.
T Consensus        62 ~~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          62 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HhCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhh-ccccceeecCCCCcCcCcccchhHH
Confidence            3455555555555 23332 112233455666666666663 3332 2222222 34577777777643211    1 11


Q ss_pred             -HHhhCCCCCceee
Q 021374          262 -ACIAKCKNLVSLN  274 (313)
Q Consensus       262 -~~l~~~~~L~~L~  274 (313)
                       ..+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             1234577777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.13  E-value=0.0017  Score=51.96  Aligned_cols=135  Identities=20%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCC
Q 021374          114 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  193 (313)
Q Consensus       114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~  193 (313)
                      .+++.|+++++ .++..     ....++|++|+++++ .++.  ++   ....+|+.|++.+. .++.  +.   .-.+.
T Consensus        38 ~~l~~LdLs~~-~L~~l-----p~~~~~L~~L~Ls~N-~l~~--lp---~~~~~L~~L~l~~n-~l~~--l~---~lp~~   99 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSL-----PELPPHLESLVASCN-SLTE--LP---ELPQSLKSLLVDNN-NLKA--LS---DLPPL   99 (353)
T ss_dssp             HTCSEEECTTS-CCSCC-----CSCCTTCSEEECCSS-CCSS--CC---CCCTTCCEEECCSS-CCSC--CC---SCCTT
T ss_pred             cCCCEEEeCCC-CCCCC-----CCCCCCCCEEECCCC-CCcc--cc---cchhhhhhhhhhhc-ccch--hh---hhccc
Confidence            47889999886 44421     134578999999987 5552  11   23568999999885 3332  11   11256


Q ss_pred             CcEEecCCCCCCCHHHHHHHHhhCCCCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCcee
Q 021374          194 LESLNLTRCVKLTDGGLQKILIKCSSLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSL  273 (313)
Q Consensus       194 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  273 (313)
                      |++|+++++ .+..  ++. ...+++|+.|+++++.....     ....+.+..+.+..+.....   ..+..++.++.+
T Consensus       100 L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~---~~l~~l~~l~~L  167 (353)
T d1jl5a_         100 LEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNSLKKL-----PDLPPSLEFIAAGNNQLEEL---PELQNLPFLTAI  167 (353)
T ss_dssp             CCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSSC---CCCTTCTTCCEE
T ss_pred             ccccccccc-cccc--ccc-hhhhccceeecccccccccc-----ccccccccchhhcccccccc---ccccccccceec
Confidence            999999884 4543  222 35678899999987432111     11345677777766533221   224567888889


Q ss_pred             eccCC
Q 021374          274 NLTWC  278 (313)
Q Consensus       274 ~l~~~  278 (313)
                      ++.++
T Consensus       168 ~l~~n  172 (353)
T d1jl5a_         168 YADNN  172 (353)
T ss_dssp             ECCSS
T ss_pred             ccccc
Confidence            88876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.51  E-value=0.0028  Score=50.66  Aligned_cols=134  Identities=14%  Similarity=0.044  Sum_probs=81.7

Q ss_pred             CCCcEEEecCCcccCHHHHHHHHhcCCCCcEEeccCCcccchHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhhC-C
Q 021374          140 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRCVKLTDGGLQKILIKC-S  218 (313)
Q Consensus       140 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~  218 (313)
                      .+|++|+++++ .++.  ++   ...++|++|++++. .++.  +   .....+|+.|++.++ .++.  +    ..+ +
T Consensus        38 ~~l~~LdLs~~-~L~~--lp---~~~~~L~~L~Ls~N-~l~~--l---p~~~~~L~~L~l~~n-~l~~--l----~~lp~   98 (353)
T d1jl5a_          38 RQAHELELNNL-GLSS--LP---ELPPHLESLVASCN-SLTE--L---PELPQSLKSLLVDNN-NLKA--L----SDLPP   98 (353)
T ss_dssp             HTCSEEECTTS-CCSC--CC---SCCTTCSEEECCSS-CCSS--C---CCCCTTCCEEECCSS-CCSC--C----CSCCT
T ss_pred             cCCCEEEeCCC-CCCC--CC---CCCCCCCEEECCCC-CCcc--c---ccchhhhhhhhhhhc-ccch--h----hhhcc
Confidence            57999999987 5542  22   24578999999874 5553  2   233578999999884 4442  1    223 4


Q ss_pred             CCCEEEeCCCCCCCHHHHHHhhcCCCCCEEecCCCCCCChHHHHHhhCCCCCceeeccCCCCCChHHHHHHHHhCCCccE
Q 021374          219 SLRSLNLYALSGFTDEAYKKISLLAHLKFLDLCGAQNLSDEGLACIAKCKNLVSLNLTWCVRITDVGVMAIAEGCSSLEF  298 (313)
Q Consensus       219 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  298 (313)
                      .|++|+++++ .+...  ...+.+++|++|+++++ .+...    ......+..+.+.++.......    ...++.++.
T Consensus        99 ~L~~L~L~~n-~l~~l--p~~~~l~~L~~L~l~~~-~~~~~----~~~~~~l~~l~~~~~~~~~~~~----l~~l~~l~~  166 (353)
T d1jl5a_          99 LLEYLGVSNN-QLEKL--PELQNSSFLKIIDVDNN-SLKKL----PDLPPSLEFIAAGNNQLEELPE----LQNLPFLTA  166 (353)
T ss_dssp             TCCEEECCSS-CCSSC--CCCTTCTTCCEEECCSS-CCSCC----CCCCTTCCEEECCSSCCSSCCC----CTTCTTCCE
T ss_pred             cccccccccc-ccccc--cchhhhccceeeccccc-ccccc----ccccccccchhhcccccccccc----cccccccee
Confidence            6999999874 44321  23457889999999887 33321    1124566677766553222211    123556666


Q ss_pred             eecCCc
Q 021374          299 LSSGAE  304 (313)
Q Consensus       299 L~l~~~  304 (313)
                      +.++.+
T Consensus       167 L~l~~n  172 (353)
T d1jl5a_         167 IYADNN  172 (353)
T ss_dssp             EECCSS
T ss_pred             cccccc
Confidence            666654