Citrus Sinensis ID: 021375

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MASIRFVFLVLAFTSSFVSSSSSSDSGRKELRNKKGNWESVVQLPHSINSKRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC
cccHHHHHHHHHHHHHHHccccccccccHHHccccccccccEEcccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHccccccccEEEccccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccEEEcccccEEEEEEcccccccccccccccccccccEEEEEEEEEccccccHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHcHHHcccEEEcccccEEEccEEEcccccccccccHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccHHHHHHcccEEccccccEEEEEEEccccccccccccccccEEEccEEEEcEEEEEccccccccccccccccccccccHHHHHHHcccccccccEEEccccccccccHHcccc
MASIRFVFLVLAFTSSfvssssssdsgrkelrnkkgnwesvvqlphsinskrvdpsrvtqiswrprVFLYRgllsneecdhlislghgaekkykrtgedpenvsknkqnssfrtelnIEDDIVARIEEKILtwtflpkenskpvhvMRYGLDEAKEnldyfgnksalglsQPLMAAVVLYLSNvtqggellfpnseekdkmwsdcaktsnvlrpvkgNAILFFtvhpnaapdessshtrcpvlegEMWSAVKFFQVKAANAeevligsdsnectdeddncphwaavgecqrnpvymlgspdyygtcrkschac
MASIRFVFLVLAFtssfvssssssdsgrkelrnkkgnwesvvqlphsinskrvdpsrvtqiswrPRVFLYRGLLSNEECDHLISLGHGAEkkykrtgedpenvsknkqnssfrtelniedDIVARIEEKILtwtflpkenskpvHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHpnaapdessSHTRCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC
MASIRFVFLVLAFTssfvssssssdsGRKELRNKKGNWESVVQLPHSINSKRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC
***IRFVFLVLAFTSSF***************************************RVTQISWRPRVFLYRGLLSNEECDHLISLGH****************************LNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPN*****KMWSDCAKTSNVLRPVKGNAILFFTVHP***********RCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSPDYYGTCRK*****
*ASIRFVFLVLAFTSSFV*****************************INSKRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGH********************QNSSFRTELNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAA*****************DDNCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC
MASIRFVFLVLAFTS******************KKGNWESVVQLPHSINSKRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAE******************NSSFRTELNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNA*********RCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC
MASIRFVFLVLAFTSSFVSSSSS***************************KRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASIRFVFLVLAFTSSFVSSSSSSDSGRKELRNKKGNWESVVQLPHSINSKRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
P16924516 Prolyl 4-hydroxylase subu yes no 0.552 0.335 0.266 1e-08
P54001534 Prolyl 4-hydroxylase subu yes no 0.552 0.323 0.257 2e-07
Q60715534 Prolyl 4-hydroxylase subu yes no 0.555 0.325 0.251 1e-06
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.552 0.323 0.25 2e-06
P13674534 Prolyl 4-hydroxylase subu yes no 0.552 0.323 0.25 2e-06
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.562 0.329 0.246 3e-06
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.552 0.323 0.25 3e-06
Q9NXG6502 Transmembrane prolyl 4-hy no no 0.520 0.324 0.247 2e-05
O15460535 Prolyl 4-hydroxylase subu no no 0.549 0.321 0.251 3e-05
Q8BG58503 Transmembrane prolyl 4-hy no no 0.520 0.324 0.242 4e-05
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function desciption
 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 37/210 (17%)

Query: 64  RPRVFLYRGLLSNEECDHLISLGHGAEKKYKR-TGEDPEN---------VSKNKQNSSFR 113
           +PR+  +  ++S+EE + +  L   A+ +  R T  DPE          VSK+   S + 
Sbjct: 316 KPRIVRFLDIISDEEIETVKEL---AKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGY- 371

Query: 114 TELNIEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPL 173
                E  +V+RI  +I   T L    ++ + V  YG+    E    FG K      + L
Sbjct: 372 -----ESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKEL 426

Query: 174 -----MAAVVLYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPN 228
                +A  + Y+S+V+ GG  +FP  E    +W           P KG A+ ++ + P+
Sbjct: 427 GTGNRIATWLFYMSDVSAGGATVFP--EVGASVW-----------PKKGTAVFWYNLFPS 473

Query: 229 AAPDESSSHTRCPVLEGEMWSAVKFFQVKA 258
              D S+ H  CPVL G  W + K+   + 
Sbjct: 474 GEGDYSTRHAACPVLVGNKWVSNKWLHERG 503
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9NXG6|P4HTM_HUMAN Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q8BG58|P4HTM_MOUSE Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
224122338310 predicted protein [Populus trichocarpa] 0.984 0.993 0.571 1e-106
359490628312 PREDICTED: prolyl 4-hydroxylase subunit 0.993 0.996 0.585 1e-101
255545252309 prolyl 4-hydroxylase alpha subunit, puta 0.913 0.925 0.593 1e-100
302143843317 unnamed protein product [Vitis vinifera] 0.993 0.981 0.576 2e-99
356530852302 PREDICTED: uncharacterized protein LOC10 0.955 0.990 0.566 3e-93
356559784264 PREDICTED: uncharacterized protein LOC10 0.814 0.965 0.596 1e-86
449469338311 PREDICTED: uncharacterized protein LOC10 0.958 0.964 0.525 2e-82
449488641311 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.958 0.964 0.522 2e-81
30686940291 Oxoglutarate/iron-dependent oxygenase [A 0.923 0.993 0.504 1e-76
297803562290 ShTK domain-containing protein [Arabidop 0.840 0.906 0.510 4e-73
>gi|224122338|ref|XP_002318810.1| predicted protein [Populus trichocarpa] gi|222859483|gb|EEE97030.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/315 (57%), Positives = 238/315 (75%), Gaps = 7/315 (2%)

Query: 1   MASIRFV--FLVLAFTSSFVSSSSSSDSGRKELRNKKGNWESVVQLPHSINSKRVDPSRV 58
           MAS  ++  F+VL  T+ F  S     S RKELRNK+ + E+++Q   SI +  VDPSRV
Sbjct: 1   MASFVYLLLFMVLTLTTQF--SLCFGKSSRKELRNKEAHLETMIQFGSSIQTNWVDPSRV 58

Query: 59  TQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELNI 118
             +SW+PRVF+Y+G L++EECDHLISL  G ++  +   +D   + +N+  +S  + LN+
Sbjct: 59  VTVSWQPRVFVYKGFLTDEECDHLISLAQGTKETSEGKDDDSGRIERNRLFASSTSLLNM 118

Query: 119 EDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVV 178
           +D+I++RIEE++  WT LPKENSKP+ VM YG+++AK   DYFGNKSA+  S+PLMA +V
Sbjct: 119 DDNILSRIEERVSAWTLLPKENSKPLQVMHYGIEDAKNYFDYFGNKSAIISSEPLMATLV 178

Query: 179 LYLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHT 238
            YLSNVTQGGE+ FP SE K+K+WSDC K S+ LRP+KGNAILFFTVHPN +PD  SSH+
Sbjct: 179 FYLSNVTQGGEIFFPKSEVKNKIWSDCTKISDSLRPIKGNAILFFTVHPNTSPDMGSSHS 238

Query: 239 RCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLG 298
           RCPVLEGEMW A K F ++A    +V   S+ +ECTDED+NCP WAA+GEC++NPVYM+G
Sbjct: 239 RCPVLEGEMWYATKKFYLRAI---KVFSDSEGSECTDEDENCPSWAALGECEKNPVYMIG 295

Query: 299 SPDYYGTCRKSCHAC 313
           SPDY+GTCRKSC+AC
Sbjct: 296 SPDYFGTCRKSCNAC 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490628|ref|XP_002271805.2| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255545252|ref|XP_002513687.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223547595|gb|EEF49090.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302143843|emb|CBI22704.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530852|ref|XP_003533993.1| PREDICTED: uncharacterized protein LOC100775928 [Glycine max] Back     alignment and taxonomy information
>gi|356559784|ref|XP_003548177.1| PREDICTED: uncharacterized protein LOC100795761 [Glycine max] Back     alignment and taxonomy information
>gi|449469338|ref|XP_004152378.1| PREDICTED: uncharacterized protein LOC101218968 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488641|ref|XP_004158125.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101218968 [Cucumis sativus] Back     alignment and taxonomy information
>gi|30686940|ref|NP_194290.2| Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana] gi|26451153|dbj|BAC42680.1| unknown protein [Arabidopsis thaliana] gi|29893542|gb|AAP06823.1| unknown protein [Arabidopsis thaliana] gi|332659681|gb|AEE85081.1| Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803562|ref|XP_002869665.1| ShTK domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315501|gb|EFH45924.1| ShTK domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
TAIR|locus:2131884291 AT4G25600 [Arabidopsis thalian 0.923 0.993 0.504 2.9e-71
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.811 0.881 0.438 5.1e-58
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.814 0.852 0.430 5.5e-54
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.840 0.882 0.415 8.9e-54
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.638 0.689 0.370 4.9e-30
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.635 0.683 0.352 5.7e-27
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.613 0.668 0.346 3.2e-26
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.626 0.678 0.318 1.4e-23
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.690 0.75 0.287 1e-20
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.613 0.700 0.301 3.5e-20
TAIR|locus:2131884 AT4G25600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 159/315 (50%), Positives = 200/315 (63%)

Query:     1 MASIRFVFLVLAFTXXXXXXXXXXXXGRKELRNKKGNWESV-VQLPHSINSKRVDPSRVT 59
             MA +  +FL+L  T             RKELR+K+   +S   Q  + + SK VDP+RV 
Sbjct:     1 MACLSRIFLILMITMSSSSPPFCSGGSRKELRDKEITSKSDDTQASYVLGSKFVDPTRVL 60

Query:    60 QISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELNIE 119
             Q+SW PRVFLYRG LS EECDHLISL     +K     E  E  S +      +T+L   
Sbjct:    61 QLSWLPRVFLYRGFLSEEECDHLISL-----RK-----ETTEVYSVDADG---KTQL--- 104

Query:   120 DDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKENLDYFGNKSALGLSQPLMAAVVL 179
             D +VA IEEK+  WTFLP EN   + V  Y  +++ + LDYFG + +  L + L+A VVL
Sbjct:   105 DPVVAGIEEKVSAWTFLPGENGGSIKVRSYTSEKSGKKLDYFGEEPSSVLHESLLATVVL 164

Query:   180 YLSNVTQGGELLFPNSEEKDKMWSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTR 239
             YLSN TQGGELLFPNSE K K  + C +  N+LRPVKGNAILFFT   NA+ D  S+H R
Sbjct:   165 YLSNTTQGGELLFPNSEMKPK--NSCLEGGNILRPVKGNAILFFTRLLNASLDGKSTHLR 222

Query:   240 CPVLEGEMWSAVKF-FQVKAANAEEVLIGSDSNECTDEDDNCPHWAAVGECQRNPVYMLG 298
             CPV++GE+  A K  +  K A  EE      S EC+DED+NC  WA +GEC++NPVYM+G
Sbjct:   223 CPVVKGELLVATKLIYAKKQARIEE------SGECSDEDENCGRWAKLGECKKNPVYMIG 276

Query:   299 SPDYYGTCRKSCHAC 313
             SPDYYGTCRKSC+AC
Sbjct:   277 SPDYYGTCRKSCNAC 291
GO:0005506 "iron ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00121092
hypothetical protein (310 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 6e-73
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 1e-11
smart0025433 smart00254, ShKT, ShK toxin domain 2e-05
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  226 bits (578), Expect = 6e-73
 Identities = 113/275 (41%), Positives = 167/275 (60%), Gaps = 24/275 (8%)

Query: 54  DPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFR 113
           + SRV  +SW+PR+F+Y+G LS+ ECDHL+ L    +KK +R+      V+ NK   S  
Sbjct: 43  NASRVKAVSWQPRIFVYKGFLSDAECDHLVKLA---KKKIQRS-----MVADNKSGKSVM 94

Query: 114 TELNI---------EDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKE-NLDYFGN 163
           +E+           +D +V+RIEE+I  WTFLP+EN++ + ++RY   +  E + DYF +
Sbjct: 95  SEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHD 154

Query: 164 KSALGLSQPLMAAVVLYLSNVTQGGELLFPNSE-----EKDKMWSDCAKTSNVLRPVKGN 218
           K    L     A V++YLS V +GGE +FPN+E      KD  +S+CA     ++PVKG+
Sbjct: 155 KINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGD 214

Query: 219 AILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDD 278
           A+LFF++H +  PD  S H  CPV+EGE WSA K+  +++     V +  D+  C D+  
Sbjct: 215 AVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPV-VPKDTEGCADKSA 273

Query: 279 NCPHWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC 313
           +C  WAA GEC++NPVYM+G+    G CRKSC  C
Sbjct: 274 HCAEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVC 308

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|214586 smart00254, ShKT, ShK toxin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.93
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.64
PHA02813 354 hypothetical protein; Provisional 99.63
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.54
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.19
smart0025433 ShKT ShK toxin domain. ShK toxin domain 99.09
PF0154938 ShK: ShK domain-like; InterPro: IPR003582 The ShK 98.75
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.34
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.27
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 98.22
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.2
PHA02866 333 Hypothetical protein; Provisional 97.97
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.81
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 97.37
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.24
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.07
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 96.44
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 96.09
TIGR02466201 conserved hypothetical protein. This family consis 95.72
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 95.49
KOG3844 476 consensus Predicted component of NuA3 histone acet 94.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 93.75
PHA02923 315 hypothetical protein; Provisional 91.98
KOG3371 243 consensus Uncharacterized conserved protein [Funct 89.12
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 83.5
PLN02485329 oxidoreductase 82.44
KOG3200224 consensus Uncharacterized conserved protein [Funct 80.41
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-81  Score=592.49  Aligned_cols=264  Identities=40%  Similarity=0.821  Sum_probs=243.8

Q ss_pred             CCcccCCceeEEeecCCcEEEEcCCCCHHHHHHHHHHhccCCccceeeCCCCCcccccccccccccccC-CccHHHHHHH
Q 021375           49 NSKRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELN-IEDDIVARIE  127 (313)
Q Consensus        49 ~~~~~~P~kve~ls~~P~i~v~~~fLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~RtS~~~~l~-~~d~vv~~i~  127 (313)
                      .+..++|.|+|+||++|+||+|+||||++||++||++|++++++|+++++.+|++..+++|||+++|+. .+++++++|+
T Consensus        38 ~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~  117 (310)
T PLN00052         38 AAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIE  117 (310)
T ss_pred             CCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHH
Confidence            344679999999999999999999999999999999999999999999887777778899999999998 6789999999


Q ss_pred             HHHHhhcCCCCCCCCcceEeeecC-CCccccccCCCCCCCCCCCCCeeEEEEeeecCCCCCcccccCCCc-----ccccc
Q 021375          128 EKILTWTFLPKENSKPVHVMRYGL-DEAKENLDYFGNKSALGLSQPLMAAVVLYLSNVTQGGELLFPNSE-----EKDKM  201 (313)
Q Consensus       128 ~Ri~~~tglp~~~~E~lqv~rY~~-~~y~~H~D~~~~~~~~~~~~~R~~TvLiYLnDv~~GGeT~FP~~~-----~~~~~  201 (313)
                      +||++++++|.++.|+|||+||++ |+|++|+|++.+..+...+++|++|+|+|||||++||||+||.++     +++..
T Consensus       118 ~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~  197 (310)
T PLN00052        118 ERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDT  197 (310)
T ss_pred             HHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccc
Confidence            999999999999999999999999 999999999986544456899999999999999999999999984     34567


Q ss_pred             cccccCcCeeEecccceEEEEeccCCCCCCCCCCcccccccccceeeeeEEEEEeccccccccccCCCCCCCcCCCCCch
Q 021375          202 WSDCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAANAEEVLIGSDSNECTDEDDNCP  281 (313)
Q Consensus       202 ~~~c~~~~~~V~PkkG~AllF~n~~~~g~~D~~slH~gcPV~~G~K~iat~Wi~~~~~~~~~~~~~~~~~~C~d~~~~C~  281 (313)
                      |++|++.+++|+|+||+||||+|+++||..|++++|+||||++|+||+||+|||..++...... ...++.|.|++++|+
T Consensus       198 ~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~~~~~-~~~~~~C~d~~~~C~  276 (310)
T PLN00052        198 FSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPVV-PKDTEGCADKSAHCA  276 (310)
T ss_pred             hhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccCCCcC-CccCCCCcCCcccCh
Confidence            8999999999999999999999999999999999999999999999999999999999753221 134679999999999


Q ss_pred             hHhhcCccccCccccccCccCcchhhhhcCCC
Q 021375          282 HWAAVGECQRNPVYMLGSPDYYGTCRKSCHAC  313 (313)
Q Consensus       282 ~Wa~~geC~~n~~~M~g~~~~~~~C~~sC~~C  313 (313)
                      .||+.|||++||.||+|+++++++|+||||.|
T Consensus       277 ~Wa~~GeC~~Np~yM~g~~~~~~~C~~SC~~C  308 (310)
T PLN00052        277 EWAAAGECEKNPVYMVGAEGAPGNCRKSCGVC  308 (310)
T ss_pred             hHhhCCccccChHhhcCCCCCCChhhcccccc
Confidence            99999999999999999999999999999999

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>smart00254 ShKT ShK toxin domain Back     alignment and domain information
>PF01549 ShK: ShK domain-like; InterPro: IPR003582 The ShK toxin domain is found in metridin, a toxin from Metridium senile (brown sea anemone) and in ShK, a structurally defined polypeptide from the sea anemone Stoichactis helianthus (Stichodactyla helianthus) (Caribbean sea anemone) Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>KOG3371 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 3e-29
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 3e-29
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 3e-29
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 3e-28
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 9e-13
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 14/209 (6%)
Query: 58  VTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELN 117
           V  +SW PR FL +  LS+EECD+++       K  K +  D  N S    +S  RT   
Sbjct: 22  VVHLSWSPRAFLLKNFLSDEECDYIVE--KARPKMVKSSVVD--NESGKSVDSEIRTSTG 77
Query: 118 I-----EDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEAKE-NLDYFGNKSALGLSQ 171
                 ED ++++IE+++   T +P EN + + V+ Y   +  E + DYF +    G   
Sbjct: 78  TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 137
Query: 172 --PLMAAVVLYLSNVTQGGELLFPNSEEK--DKMWSDCAKTSNVLRPVKGNAILFFTVHP 227
               +  +++YL+ V +GGE + PN+E+K     WS+CAK    ++P+KG+A++F+++ P
Sbjct: 138 GGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKP 197
Query: 228 NAAPDESSSHTRCPVLEGEMWSAVKFFQV 256
           + + D +S H  CP L+G+ WSA K+  V
Sbjct: 198 DGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 2e-50
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 3e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 5e-05
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  165 bits (420), Expect = 2e-50
 Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 14/210 (6%)

Query: 55  PSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRT 114
              V  +SW PR FL +  LS+EECD+++     A  K  ++    +N S    +S  RT
Sbjct: 10  RGEVVHLSWSPRAFLLKNFLSDEECDYIVEK---ARPKMVKS-SVVDNESGKSVDSEIRT 65

Query: 115 ELN-----IEDDIVARIEEKILTWTFLPKENSKPVHVMRYGLDEA-KENLDYFGNKSALG 168
                    ED ++++IE+++   T +P EN + + V+ Y   +  + + DYF +    G
Sbjct: 66  STGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAG 125

Query: 169 LSQ--PLMAAVVLYLSNVTQGGELLFPNSEEK--DKMWSDCAKTSNVLRPVKGNAILFFT 224
                  +  +++YL+ V +GGE + PN+E+K     WS+CAK    ++P+KG+A++F++
Sbjct: 126 PEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYS 185

Query: 225 VHPNAAPDESSSHTRCPVLEGEMWSAVKFF 254
           + P+ + D +S H  CP L+G+ WSA K+ 
Sbjct: 186 LKPDGSNDPASLHGSCPTLKGDKWSATKWI 215
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.97
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.87
2k72_A37 Matrix metalloproteinase-23; toxin, metalloproteas 99.52
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 98.79
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.09
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.31
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.29
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.14
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 96.78
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 96.62
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 95.73
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 93.67
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 92.04
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 90.97
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 90.13
2lg4_A40 Aurelin; antimicrobial protein; NMR {Aurelia aurit 88.08
1bei_A35 SHK-DNP22, potassium channel toxin SHK; potassium 87.44
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 85.91
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=3.5e-54  Score=389.04  Aligned_cols=211  Identities=29%  Similarity=0.592  Sum_probs=192.0

Q ss_pred             CcccCCceeEEeecCCcEEEEcCCCCHHHHHHHHHHhccCCccceeeCCCCCcccccccccccccccC-CccHHHHHHHH
Q 021375           50 SKRVDPSRVTQISWRPRVFLYRGLLSNEECDHLISLGHGAEKKYKRTGEDPENVSKNKQNSSFRTELN-IEDDIVARIEE  128 (313)
Q Consensus        50 ~~~~~P~kve~ls~~P~i~v~~~fLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~RtS~~~~l~-~~d~vv~~i~~  128 (313)
                      ...++|.|+|+||++|+|++|+||||++||++||+++++++++|++.++.+|+...+++|+|.++|++ .+++++++|++
T Consensus         5 ~~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~   84 (224)
T 2jig_A            5 LKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEK   84 (224)
T ss_dssp             --CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHH
T ss_pred             cccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHH
Confidence            45678999999999999999999999999999999999999999998876677778889999999999 56899999999


Q ss_pred             HHHhhcCCCCCCCCcceEeeecC-CCccccccCCCCCCCC--CCCCCeeEEEEeeecCCCCCcccccCCCc--ccccccc
Q 021375          129 KILTWTFLPKENSKPVHVMRYGL-DEAKENLDYFGNKSAL--GLSQPLMAAVVLYLSNVTQGGELLFPNSE--EKDKMWS  203 (313)
Q Consensus       129 Ri~~~tglp~~~~E~lqv~rY~~-~~y~~H~D~~~~~~~~--~~~~~R~~TvLiYLnDv~~GGeT~FP~~~--~~~~~~~  203 (313)
                      ||++++++|....|++||+||++ |+|++|+|++....+.  ..+++|++|+|+||||+++||||+||.+.  +++..|+
T Consensus        85 ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~  164 (224)
T 2jig_A           85 RVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWS  164 (224)
T ss_dssp             HHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSCCCSTTSC
T ss_pred             HHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCccccccccccc
Confidence            99999999999999999999999 9999999998654221  34689999999999999999999999874  3456788


Q ss_pred             cccCcCeeEecccceEEEEeccCCCCCCCCCCcccccccccceeeeeEEEEEecccc
Q 021375          204 DCAKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVLEGEMWSAVKFFQVKAAN  260 (313)
Q Consensus       204 ~c~~~~~~V~PkkG~AllF~n~~~~g~~D~~slH~gcPV~~G~K~iat~Wi~~~~~~  260 (313)
                      +|++.+++|+|++|+||||+|+++||+.|+.++|+||||++|+||++++|||..++.
T Consensus       165 ~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~~  221 (224)
T 2jig_A          165 ECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG  221 (224)
T ss_dssp             TTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCCC
T ss_pred             ccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCcC
Confidence            999889999999999999999999999999999999999999999999999999875
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2k72_A Matrix metalloproteinase-23; toxin, metalloprotease, MMP23, potassium channel, cleavage on PAIR of basic residues, glycoprotein, hydrolase; NMR {Synthetic} Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita} Back     alignment and structure
>1bei_A SHK-DNP22, potassium channel toxin SHK; potassium channel inhibitor, SEA anemone, immunosuppressant neurotoxin; HET: DNP; NMR {Stichodactyla helianthus} SCOP: g.19.1.1 PDB: 1roo_A 2k9e_A* 1c2u_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.39
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.21
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.18
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 92.22
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 85.19
d1rooa_35 Sea anemone toxin k {Sun anemone (Stichodactyla he 83.7
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=97.39  E-value=0.00038  Score=61.51  Aligned_cols=178  Identities=11%  Similarity=0.021  Sum_probs=88.8

Q ss_pred             cCCcEEEEcCCCCHHHHHHHHHHhccCCc-cc--eeeCCCCCcccccccccccccccCCccHHH------HHHHHHHHhh
Q 021375           63 WRPRVFLYRGLLSNEECDHLISLGHGAEK-KY--KRTGEDPENVSKNKQNSSFRTELNIEDDIV------ARIEEKILTW  133 (313)
Q Consensus        63 ~~P~i~v~~~fLs~~EC~~Li~~a~~~l~-~s--~v~~~~~g~~~~~~~RtS~~~~l~~~d~vv------~~i~~Ri~~~  133 (313)
                      .+-+| ++.++||++|+++|.+..+..+. +.  ...... ........+. ...++.  .+.+      .+|.+.++++
T Consensus        15 ~~Gyl-~i~~~~s~~ei~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~l~~~p~il~~v~~l   89 (308)
T d2fcta1          15 KNGFI-GPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLD-AISGGTNIAN-YDRHLD--DDFLASHICRPEICDRVESI   89 (308)
T ss_dssp             HHSEE-EEEESSCHHHHHHHHHHHHHHHTCCTTCSCCCCC-C----CGGGG-BCGGGT--CHHHHHHTTCHHHHHHHHHH
T ss_pred             hCCEE-ECcCccCHHHHHHHHHHHHHHHhhcccccccccc-cccCccceee-ehhhhc--CHHHHHhhcCchhhhHHHHh
Confidence            34444 67999999999999876542211 11  111100 0000111111 111111  2222      2345556666


Q ss_pred             cCCCCCCCCcceEeeecC-CCccccccCCCCCCC--------CCCCCCeeEEEEeeecCCCC--CcccccCCCccc----
Q 021375          134 TFLPKENSKPVHVMRYGL-DEAKENLDYFGNKSA--------LGLSQPLMAAVVLYLSNVTQ--GGELLFPNSEEK----  198 (313)
Q Consensus       134 tglp~~~~E~lqv~rY~~-~~y~~H~D~~~~~~~--------~~~~~~R~~TvLiYLnDv~~--GGeT~FP~~~~~----  198 (313)
                      +|-+.......-+.+..- +.+.+|.|...-...        ........+|+.|+|.|+.+  |+-.+.|...-.    
T Consensus        90 lG~~~~~~~~~~~~k~p~~~~~~wHqD~~y~~~~~~~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~viPGSHk~~~~~  169 (308)
T d2fcta1          90 LGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQFIPGTQNSMNYD  169 (308)
T ss_dssp             HCSCEEEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEEETTCTTSCCBC
T ss_pred             hcccceeeecccccccccccccccccccccccCCCCcccccCCCCCCCceEEEEEecccccccceeEEEeeCCccCCccc
Confidence            663321111112234333 668899996432110        01124568999999999763  445556754300    


Q ss_pred             ---------cc-------c---------cc----cc-----cCcCeeEecccceEEEEeccCCCCCCCCCCcccccccc-
Q 021375          199 ---------DK-------M---------WS----DC-----AKTSNVLRPVKGNAILFFTVHPNAAPDESSSHTRCPVL-  243 (313)
Q Consensus       199 ---------~~-------~---------~~----~c-----~~~~~~V~PkkG~AllF~n~~~~g~~D~~slH~gcPV~-  243 (313)
                               +.       .         ..    +.     ....+.+.-++|++|||..         .++|++-|-. 
T Consensus       170 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lkaGdvlif~~---------~l~HgS~pN~~  240 (308)
T d2fcta1         170 ETKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWS---------TLMHASYPHSG  240 (308)
T ss_dssp             TTSCCCCCTTTCSSCEETTEEEEBTTBCGGGGBSSTTCCCCGGGCEEECBCTTEEEEEET---------TSEEEECCBCS
T ss_pred             cccccccCcccccccccccccccccccccccccccccccccccceEEEeeCCCeEEEECC---------CccccCCCCCC
Confidence                     00       0         00    00     0112445568999999976         8999999976 


Q ss_pred             -cc-eeeeeEEEE
Q 021375          244 -EG-EMWSAVKFF  254 (313)
Q Consensus       244 -~G-~K~iat~Wi  254 (313)
                       ++ .+++++..+
T Consensus       241 ~S~~~R~~~~~rY  253 (308)
T d2fcta1         241 ESQEMRMGFASRY  253 (308)
T ss_dssp             SSSSCEEEEEEEE
T ss_pred             CCCCceEEEEEEE
Confidence             23 456655543
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1rooa_ g.19.1.1 (A:) Sea anemone toxin k {Sun anemone (Stichodactyla helianthus), SHK [TaxId: 6123]} Back     information, alignment and structure