Citrus Sinensis ID: 021380
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 313 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UTC5 | 235 | Putative uridine kinase C | yes | no | 0.610 | 0.812 | 0.357 | 6e-32 | |
| P11664 | 237 | Uncharacterized protein Y | N/A | no | 0.683 | 0.902 | 0.317 | 4e-19 | |
| C5DNG5 | 347 | ATP-dependent kinase YFH7 | yes | no | 0.699 | 0.631 | 0.270 | 5e-19 | |
| C5DXG0 | 375 | ATP-dependent kinase YFH7 | yes | no | 0.559 | 0.466 | 0.293 | 9e-18 | |
| P43591 | 353 | ATP-dependent kinase YFH7 | yes | no | 0.444 | 0.393 | 0.271 | 3e-15 | |
| C7GYB3 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| A7A245 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| B5VI33 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| B3LUL5 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 | |
| C8Z7U0 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.444 | 0.393 | 0.271 | 4e-15 |
| >sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 119/207 (57%), Gaps = 16/207 (7%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++GLAG PG+GKSTL A + K W ++ S ++ ++PMDGFH L +LD
Sbjct: 31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226
++P++A A RGA WTF+ L + ++ ++ +YAPSFDH +GDPV DDI V +
Sbjct: 79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKW 284
++++I +GNYL L+ W D ++D K ++ V+ A RV RH+ +G + A
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEEEAIE 198
Query: 285 RIEYNDRPNAELIMKSKKNADLVIKSI 311
R + ND N + K+ D+V++ +
Sbjct: 199 RTDRNDMINLTFVEKNMVTPDIVLQQL 225
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 116/239 (48%), Gaps = 25/239 (10%)
Query: 78 VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
++A+ +E + + + LL A VN + +V L PPG GKSTL W
Sbjct: 12 IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63
Query: 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL 195
A D ++ P + T LPMDGFH Y S LDA + +GAP TF+ +
Sbjct: 64 EYLAQQ-DPEL--PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFD---VAKLT 112
Query: 196 KNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
+NLR +G P +D DPVED + V +VIV+GN+L LD W +++S D
Sbjct: 113 ENLRQVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCDF 170
Query: 254 KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312
FI +R++ R I+ G VA+ D PN E ++ + + A+L+++ +
Sbjct: 171 SIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTE 229
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Escherichia coli (strain K12) (taxid: 83333) |
| >sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 117/277 (42%), Gaps = 58/277 (20%)
Query: 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
IP E + + +V + Q P + N + +VG+ G P +
Sbjct: 81 IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130
Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP- 188
R+ + P + S+ D ++ A ++PMDGFHL LD +DP EAH RRG+P TF+
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRGSPPTFDSN 185
Query: 189 -------LLLLNCL--------KNLRNQG---------------SVYAPSFDHGVGDPVE 218
LL C K + G S+Y P FDH + DP
Sbjct: 186 NCLQLCKLLAKTCTIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPST 245
Query: 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHI 273
V ++++++G YL LD W+D+ F + W +++ +D QRV KRH+
Sbjct: 246 GQHCVDAFTRIIVLEGLYLLLDEDNWRDIYPTFKDTHAVIVWKLDLGVDVLEQRVAKRHL 305
Query: 274 STGKPP--DVAKWRIEYNDRPNAELIMKSKKNADLVI 308
+G + R ND NA I + AD ++
Sbjct: 306 QSGLAATLEAGVERFRMNDLINALRIKEHCLAADDIV 342
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 50/225 (22%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
I+G G P A + N + P + SSF A ++PMDGFHL L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197
Query: 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYA---------------- 206
+ ++P+EAH RRG+P TF+ K L GS A
Sbjct: 198 SSFQNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTYDPHFP 257
Query: 207 ----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WFI 257
P FDH + DP D + ++VI++G YL D W+ V + W+I
Sbjct: 258 CIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEILQNTGSLLVWYI 317
Query: 258 EVDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPNAELIMKS 300
+++ +RV KRH ++G V + R+++ ND NA LI K+
Sbjct: 318 DIEDHVIEERVAKRHFNSGLADSVEQGRLKFQGNDLLNARLIRKN 362
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQKIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
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ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain JAY291) (taxid: 574961) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 313 | ||||||
| 255559925 | 312 | ATP binding protein, putative [Ricinus c | 0.993 | 0.996 | 0.732 | 1e-130 | |
| 225437219 | 312 | PREDICTED: putative uridine kinase C227. | 0.993 | 0.996 | 0.697 | 1e-122 | |
| 449452236 | 309 | PREDICTED: putative uridine kinase C227. | 0.888 | 0.899 | 0.721 | 1e-120 | |
| 224082738 | 231 | predicted protein [Populus trichocarpa] | 0.738 | 1.0 | 0.831 | 1e-112 | |
| 297843102 | 301 | phosphoribulokinase/uridine kinase [Arab | 0.955 | 0.993 | 0.666 | 1e-109 | |
| 356572241 | 309 | PREDICTED: ATP-dependent kinase YFH7-lik | 0.968 | 0.980 | 0.633 | 1e-109 | |
| 42561642 | 301 | P-loop containing nucleoside triphosphat | 0.961 | 1.0 | 0.651 | 1e-108 | |
| 357157235 | 322 | PREDICTED: putative uridine kinase C227. | 0.782 | 0.760 | 0.681 | 5e-99 | |
| 4587575 | 270 | Belongs to PF|01121 Uncharacterized prot | 0.862 | 1.0 | 0.594 | 2e-98 | |
| 326508064 | 322 | predicted protein [Hordeum vulgare subsp | 0.843 | 0.819 | 0.643 | 8e-98 |
| >gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/314 (73%), Positives = 265/314 (84%), Gaps = 3/314 (0%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGK-TRSLV 59
M+VSSLS T RAC S +TES LKR PS H +S S +R + Q +F + T V
Sbjct: 1 MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58
Query: 60 QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
+ S+KVLCS RR++PVVEA M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59 FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118
Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178
Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238
Query: 240 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 299
G WKD+SSMFDEKW+I+VD+DTAM+RVLKRHISTGKPPDVAKWRI+YNDRPNAELI+K
Sbjct: 239 GEGAWKDISSMFDEKWYIDVDIDTAMERVLKRHISTGKPPDVAKWRIDYNDRPNAELIIK 298
Query: 300 SKKNADLVIKSIDI 313
S+KNADL+I+SI+
Sbjct: 299 SRKNADLIIRSINF 312
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/314 (69%), Positives = 263/314 (83%), Gaps = 3/314 (0%)
Query: 1 MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLV 59
M+V+S ST+ + SSSS+ E L++ ++P + + S RR+ QP+FG TRS
Sbjct: 1 MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58
Query: 60 QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59 GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118
Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
KSTLA+EV R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY QLDAMEDP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178
Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
RGAPWTF+P LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238
Query: 240 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 299
G WK+VSSMFDEKWFIEVD++T+M+RV+KRH+STGKPPD+AKWRIEYNDRPNAELI+K
Sbjct: 239 QEGDWKEVSSMFDEKWFIEVDINTSMERVVKRHVSTGKPPDIAKWRIEYNDRPNAELIIK 298
Query: 300 SKKNADLVIKSIDI 313
SK+NADLVI+S++
Sbjct: 299 SKRNADLVIRSVNF 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/280 (72%), Positives = 240/280 (85%), Gaps = 2/280 (0%)
Query: 34 HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQR 93
H FLSF+ + + G+T + + V CSQ+RE VVE RC+D++YD LA+R
Sbjct: 32 HNFLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCIDDIYDDLARR 89
Query: 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153
LLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS DSQV P DVA
Sbjct: 90 LLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMDSQVNPADVAA 149
Query: 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 213
VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGSVYAPSFDHGV
Sbjct: 150 VLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGSVYAPSFDHGV 209
Query: 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 273
GDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKWF+E+D+D +M+RVLKRHI
Sbjct: 210 GDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKWFVEIDIDKSMERVLKRHI 269
Query: 274 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 313
STGKPPDVAKWRIEYNDRPNAELIMKSKKNADL+I+S+D
Sbjct: 270 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLLIRSVDF 309
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/231 (83%), Positives = 212/231 (91%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
MDE+YDALA RLLPT+ ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1 MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60
Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
D QVKPPDVA VLPMDGFHLY SQLDAME+P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61 DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262
SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEKWFI+VD+D
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKWFIDVDID 180
Query: 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 313
TAMQRVLKRHISTGKPPDVAKWRIEYND+PNAELI+KSKKNADLVI+SID
Sbjct: 181 TAMQRVLKRHISTGKPPDVAKWRIEYNDQPNAELIIKSKKNADLVIRSIDF 231
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/315 (66%), Positives = 247/315 (78%), Gaps = 16/315 (5%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S EL S GF W Q + S +
Sbjct: 1 MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46
Query: 61 NKTSLKVL--CSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
KT+ + L CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGA
Sbjct: 47 RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106
Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178
GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166
Query: 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238
RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226
Query: 239 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIM 298
L+ G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+
Sbjct: 227 LEEGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELII 286
Query: 299 KSKKNADLVIKSIDI 313
KSK NADL+I+S++I
Sbjct: 287 KSKTNADLLIRSVNI 301
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/319 (63%), Positives = 239/319 (74%), Gaps = 16/319 (5%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHHGFLSFSWIRRNANAQPVFGK 54
M+ + STT R + + + PL R PS S S R + Q +
Sbjct: 1 MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54
Query: 55 TRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
TR + KVL +++ +I VVE +DE+YDAL R+LP +++SN N K +VGLAG
Sbjct: 55 TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110
Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170
Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
EAHARRGAPWTFNPL LL CLKNLR GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230
Query: 235 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNA 294
NYL L+ GVWK++SS+FDEKWFI++D+D AMQRVLKRHISTGKPPD+AK RIE NDR NA
Sbjct: 231 NYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGKPPDIAKQRIENNDRLNA 290
Query: 295 ELIMKSKKNADLVIKSIDI 313
ELIMKSKKNAD++IKSID
Sbjct: 291 ELIMKSKKNADIIIKSIDF 309
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/313 (65%), Positives = 244/313 (77%), Gaps = 12/313 (3%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S S GF W + + P+ R +
Sbjct: 1 MEVSSFSTVPRYCNSRSFVPEL--------SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48
Query: 61 NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N + CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGAGK
Sbjct: 49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108
Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168
Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228
Query: 241 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 300
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 229 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 288
Query: 301 KKNADLVIKSIDI 313
K NADL+I+S++I
Sbjct: 289 KTNADLLIRSMNI 301
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357157235|ref|XP_003577730.1| PREDICTED: putative uridine kinase C227.14-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 167/245 (68%), Positives = 202/245 (82%)
Query: 69 CSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128
C QR+ P +EA+ M+EVYDALA+ LL +++ K+IVGLAGPPGAGKST+A+EVV
Sbjct: 76 CYQRQGAPQIEAKSMEEVYDALAEHLLSVLKDVDHLDSKYIVGLAGPPGAGKSTVASEVV 135
Query: 129 RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188
RR+N W +K ++ S + D+AT+LPMDGFHLY SQLDAMEDPKEAHARRGAPWTFNP
Sbjct: 136 RRVNMHWSKKHATDSSLISNEDIATMLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFNP 195
Query: 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248
L LNCLK LR +GSVYAPSFDHGVGDPVE+DI V QHK+VIV+GNYL L+ +W+D+
Sbjct: 196 SLFLNCLKTLRKEGSVYAPSFDHGVGDPVENDIFVKPQHKIVIVEGNYLLLEENIWRDIR 255
Query: 249 SMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
MFDEKWFIE+D+D +MQRVL+RHI TGK PDVA WRI YNDRPNAELIM+S+K+ADLVI
Sbjct: 256 GMFDEKWFIEIDIDVSMQRVLQRHIGTGKEPDVAAWRISYNDRPNAELIMQSRKDADLVI 315
Query: 309 KSIDI 313
+S+D
Sbjct: 316 RSVDF 320
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4587575|gb|AAD25806.1|AC006550_14 Belongs to PF|01121 Uncharacterized protein family UPF0038 containing ATP/GTP binding domain. ESTs gb|AA585719, gb|AA728503 and gb|T22272 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/313 (59%), Positives = 225/313 (71%), Gaps = 43/313 (13%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S G+ + L F +I S +
Sbjct: 1 MEVSSFSTVPRYCNSRSFVP------GDSKFTYGTNLLFLFI--------------SAFE 40
Query: 61 NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N+ + V+C Q++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGAGK
Sbjct: 41 NERTPLVIC-QKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 99
Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 100 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 159
Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
G VY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 160 G----------------------VYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 197
Query: 241 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 300
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 198 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 257
Query: 301 KKNADLVIKSIDI 313
K NADL+I+S++I
Sbjct: 258 KTNADLLIRSMNI 270
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326508064|dbj|BAJ86775.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 170/264 (64%), Positives = 207/264 (78%)
Query: 49 QPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKH 108
QP F + + K V C QR+ P +EA+ M+EVYDALA+ LL N++ K+
Sbjct: 56 QPAFHQPVTRATWKKKHNVTCYQRQGAPQIEAKSMEEVYDALAEHLLSALKSIDNLDSKY 115
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
IVGLAGPPGAGKST+A+EVVRR+NK W QK + S D+AT+LPMDGFHLY SQLD
Sbjct: 116 IVGLAGPPGAGKSTVASEVVRRVNKRWSQKHAKDGSPNSDEDIATMLPMDGFHLYRSQLD 175
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
AMEDPKEAHARRGAPWTFNP L L CL+ L+ +GSVYAPSFDHGVGDPVE+DI V QHK
Sbjct: 176 AMEDPKEAHARRGAPWTFNPSLFLKCLQILKEEGSVYAPSFDHGVGDPVENDIFVKPQHK 235
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
+VIV+GNYL L+ VW+++ +MFDEKWFI++D+D +MQRVL+RHI TGK PDVA WRI Y
Sbjct: 236 IVIVEGNYLLLEEDVWREIRNMFDEKWFIDIDIDVSMQRVLQRHIGTGKEPDVAAWRISY 295
Query: 289 NDRPNAELIMKSKKNADLVIKSID 312
NDRPNAELI++SK+ ADLVI+S+D
Sbjct: 296 NDRPNAELILESKRAADLVIRSVD 319
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 313 | ||||||
| TAIR|locus:2007544 | 301 | AT1G03030 [Arabidopsis thalian | 0.961 | 1.0 | 0.629 | 7.9e-101 | |
| UNIPROTKB|G4MQ63 | 236 | MGG_02303 "Phosphoribulokinase | 0.638 | 0.847 | 0.394 | 2e-31 | |
| ASPGD|ASPL0000074767 | 234 | AN4382 [Emericella nidulans (t | 0.632 | 0.846 | 0.356 | 6.9e-31 | |
| POMBASE|SPAC227.14 | 235 | SPAC227.14 "uridine kinase (pr | 0.610 | 0.812 | 0.352 | 6.2e-30 | |
| CGD|CAL0002107 | 226 | orf19.7061 [Candida albicans ( | 0.619 | 0.858 | 0.344 | 2.4e-28 | |
| ASPGD|ASPL0000094429 | 583 | AN11942 [Emericella nidulans ( | 0.466 | 0.250 | 0.341 | 1.4e-20 | |
| UNIPROTKB|P11664 | 237 | yggC "conserved protein with n | 0.488 | 0.645 | 0.329 | 2.2e-15 | |
| SGD|S000001903 | 353 | YFH7 "Putative kinase with sim | 0.287 | 0.254 | 0.288 | 3.4e-13 | |
| SGD|S000005295 | 501 | URK1 "Uridine/cytidine kinase" | 0.306 | 0.191 | 0.314 | 5.7e-06 | |
| CGD|CAL0002407 | 545 | URK1 [Candida albicans (taxid: | 0.255 | 0.146 | 0.344 | 0.00027 |
| TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 197/313 (62%), Positives = 235/313 (75%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S P EL S GF W + + P+ R +
Sbjct: 1 MEVSSFSTVPRYCNSRSFV---P----EL-SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48
Query: 61 NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N + CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGAGK
Sbjct: 49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108
Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168
Query: 181 GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
GAPWTF +GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228
Query: 241 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 300
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 229 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 288
Query: 301 KKNADLVIKSIDI 313
K NADL+I+S++I
Sbjct: 289 KTNADLLIRSMNI 301
|
|
| UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 86/218 (39%), Positives = 118/218 (54%)
Query: 90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149
LA+++ LA + ++G+AG PGAGK+TLA VV + I + + D +
Sbjct: 9 LAKKVWARYKLAEPTK-RILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGEF--- 64
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQ 201
T +PMDG+HL +QL AM DP+ A RRGA +TF Q
Sbjct: 65 --VTDIPMDGYHLTRAQLAAMPDPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQ 122
Query: 202 GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259
G+V YAPSFDH V DPV D I + + ++VI++GNYL LD WK +S+ DE WF V
Sbjct: 123 GTVTIYAPSFDHAVKDPVADSIPISPKMRIVIIEGNYLALDREPWKSAASLLDEIWFANV 182
Query: 260 DLDTAMQRVLKRHISTGKPPD--VAKWRIEYNDRPNAE 295
D + A +R+ KRH+ G PD A+ RI D NA+
Sbjct: 183 DREVARERLAKRHVEAGIVPDEEAARERIRTTDFLNAD 220
|
|
| ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 76/213 (35%), Positives = 118/213 (55%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
N + ++ ++G PG+GK+ LA + RRIN +K + + + +A +PMDG+HL
Sbjct: 22 NARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTR 73
Query: 165 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVED 219
+QL M DP+ A ARRGA +TF +++APSFDH V DPV++
Sbjct: 74 AQLAQMPDPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDN 133
Query: 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPP 279
DI + +V+ +GNYL L+ W + + DE WF++VD DTA QR++KRH+ G
Sbjct: 134 DIPIAAARRVIFFEGNYLSLNKEPWSSAAKLMDELWFVDVDFDTARQRLVKRHVKAGIAK 193
Query: 280 DVA--KWRIEYNDRPNAELIMKSKKNADLVIKS 310
D A + R + ND N I+ + + +I+S
Sbjct: 194 DEADAEKRADENDLVNGREIVDCRLDVQEIIRS 226
|
|
| POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 73/207 (35%), Positives = 112/207 (54%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++GLAG PG+GKSTL A + K W ++ S ++ ++PMDGFH L +LD
Sbjct: 31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78
Query: 169 AMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQ 226
++P++A A RGA WTF +YAPSFDH +GDPV DDI V +
Sbjct: 79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKW 284
++++I +GNYL L+ W D ++D K ++ V+ A RV RH+ +G + A
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEEEAIE 198
Query: 285 RIEYNDRPNAELIMKSKKNADLVIKSI 311
R + ND N + K+ D+V++ +
Sbjct: 199 RTDRNDMINLTFVEKNMVTPDIVLQQL 225
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| CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/212 (34%), Positives = 115/212 (54%)
Query: 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161
S+ ++++ LAG PG+GK+T A + +R+ S+F V VL DGFH
Sbjct: 29 SDSQPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFH 73
Query: 162 LYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDD 220
LY S+L M DPKEA RRGAP+TF + ++ APSFDH + DP+EDD
Sbjct: 74 LYRSELTLMADPKEAFRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDD 133
Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD 280
I++ ++I++GNY+ L W ++ + D+ WFI+ + +R++KRH++ G +
Sbjct: 134 IVIHGNVDIIIIEGNYVSLRDKYWDEIENFVDDTWFIKTPENLVRERIIKRHLNAGIAAN 193
Query: 281 V--AKWRIEYNDRPNAELIMKSKKNADLVIKS 310
A R + +D NA I + K ++I S
Sbjct: 194 EKEAAERADGSDMQNAHYIDGNSKPTKVLILS 225
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| ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 56/164 (34%), Positives = 86/164 (52%)
Query: 152 ATVLPMDGFHLYLSQLDAMEDPK--EAHARRGAPWTFX--------------XXXXXXXX 195
A VL MDGFHL S+LD + + + EA+ RRGAPWTF
Sbjct: 74 ALVLSMDGFHLPRSELDTLPNKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSS 133
Query: 196 XXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
G +YAP+F H DP+ + I++ +VI++GNYL LD W+D++ + D +
Sbjct: 134 SSEETAGVLYAPTFSHSTKDPIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVDYRV 193
Query: 256 FIEVDLDTAMQRVLKRHISTGKPPDVAKW--RIEYNDRPNAELI 297
F++VDL A +R+ +RH+ G + + R++ ND N L+
Sbjct: 194 FVDVDLAEARERLAQRHVEAGIEQTLEEGFLRVDRNDAINGALV 237
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| UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 53/161 (32%), Positives = 78/161 (48%)
Query: 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPS 208
P + T LPMDGFH Y S LDA + +GAP TF +G P
Sbjct: 74 PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQ 127
Query: 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 268
+D DPVED + V +VIV+GN+L LD W +++S D FI +R+
Sbjct: 128 YDRQKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERL 185
Query: 269 LKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
+ R I+ G VA+ D PN E ++ + + A+L+++
Sbjct: 186 ISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVE 226
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| SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFDEK----WFIE 258
++ P F+H + DP D + ++VI++G YL D WK + ++ D + I+
Sbjct: 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKID 296
Query: 259 VDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPN 293
+D + +RV KRH+ +G +A+ R ++ ND N
Sbjct: 297 IDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLN 333
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| SGD|S000005295 URK1 "Uridine/cytidine kinase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 34/108 (31%), Positives = 56/108 (51%)
Query: 208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267
SF H P ++ ++ G VV+++G Y D + + + D K +++ DLD + R
Sbjct: 142 SFVHHNRVPDKNIVIYGAS--VVVIEGIYALYD----RRLLDLMDLKIYVDADLDVCLAR 195
Query: 268 VLKRHI-STGKPPD--VAKWRIEYNDRPNAELIMK-SKKNADLVIKSI 311
L R I S G+ D + +W E +PNA +K + KNAD +I S+
Sbjct: 196 RLSRDIVSRGRDLDGCIQQW--EKFVKPNAVKFVKPTMKNADAIIPSM 241
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| CGD|CAL0002407 URK1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 86 (35.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWRIE 287
V+IV+G Y D + + M D K +++ DLD + R L R I G+ A + E
Sbjct: 198 VIIVEGLYALHD----QQLLDMMDLKIYVDTDLDICLARRLTRDILYRGRDLGGAMQQWE 253
Query: 288 YNDRPNA-ELIMKSKKNADLVI-KSID 312
+PNA + I + +NADLVI + +D
Sbjct: 254 KFVKPNAVKFINPTVQNADLVIPRGLD 280
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023843001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (312 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00014548001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (459 aa) | • | • | 0.415 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 313 | |||
| PRK09270 | 229 | PRK09270, PRK09270, nucleoside triphosphate hydrol | 2e-56 | |
| COG1072 | 283 | COG1072, CoaA, Panthothenate kinase [Coenzyme meta | 7e-40 | |
| COG0572 | 218 | COG0572, Udk, Uridine kinase [Nucleotide transport | 9e-18 | |
| cd02023 | 198 | cd02023, UMPK, Uridine monophosphate kinase (UMPK, | 7e-15 | |
| TIGR00235 | 207 | TIGR00235, udk, uridine kinase | 8e-13 | |
| pfam00485 | 197 | pfam00485, PRK, Phosphoribulokinase / Uridine kina | 9e-10 | |
| PRK05480 | 209 | PRK05480, PRK05480, uridine/cytidine kinase; Provi | 2e-08 | |
| cd02024 | 187 | cd02024, NRK1, Nicotinamide riboside kinase (NRK) | 3e-07 | |
| PRK06696 | 223 | PRK06696, PRK06696, uridine kinase; Validated | 5e-07 | |
| cd02028 | 179 | cd02028, UMPK_like, Uridine monophosphate kinase_l | 1e-05 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 2e-05 | |
| COG4240 | 300 | COG4240, COG4240, Predicted kinase [General functi | 3e-05 | |
| cd02025 | 220 | cd02025, PanK, Pantothenate kinase (PanK) catalyze | 6e-05 | |
| COG1703 | 323 | COG1703, ArgK, Putative periplasmic protein kinase | 4e-04 | |
| cd02026 | 273 | cd02026, PRK, Phosphoribulokinase (PRK) is an enzy | 7e-04 | |
| PLN02348 | 395 | PLN02348, PLN02348, phosphoribulokinase | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| pfam13238 | 128 | pfam13238, AAA_18, AAA domain | 0.004 |
| >gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 2e-56
Identities = 84/233 (36%), Positives = 127/233 (54%), Gaps = 19/233 (8%)
Query: 78 VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
V+A+ DE +A+ + LL +AL + + IVG+AGPPGAGKSTLA + + +
Sbjct: 3 VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--- 59
Query: 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK 196
A +PMDGFHL + LDA R+GAP TF+ L L+
Sbjct: 60 ----------DGELPAIQVPMDGFHLDNAVLDAHG----LRPRKGAPETFDVAGLAALLR 105
Query: 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
LR VY P FD + DPV D I+V ++VIV+GNYL LD W+ ++ +FD
Sbjct: 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTI 165
Query: 256 FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
F++ + +R++ R ++ G P+ A+ + ND PNA L++++ + ADLV+
Sbjct: 166 FLDAPAEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVL 218
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Length = 229 |
| >gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 7e-40
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 18/211 (8%)
Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158
L +N I+G+AG GKST A +++ + WP+ P V V MD
Sbjct: 74 LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPES----------PKVDLV-TMD 121
Query: 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV 217
GFH + LD AR+G P +++ LL L +++ V+AP + H + DPV
Sbjct: 122 GFHYPNAVLDERG----LMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPV 177
Query: 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGK 277
D V Q ++IV+GN + DG W +S FD +++ D + +R ++R + G
Sbjct: 178 PDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGL 237
Query: 278 PPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
+N P +E A
Sbjct: 238 TAFEDPASYFHNYAPLSEREAIESARAIWDN 268
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Length = 283 |
| >gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-18
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+AG G+GK+T+A E+ ++ V+ +D ++ S L
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHLP 53
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
E P F+ LL+ LK+L+ V P +D+ + I V
Sbjct: 54 FEE---RNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND- 109
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPD--VAKWR 285
VVIV+G L D + + + D K F++ D D + R +KR + G+ + + ++
Sbjct: 110 VVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYV 165
Query: 286 IEYNDRPNAEL-IMKSKKNADLVI 308
RP E I +KK AD++I
Sbjct: 166 KTV--RPMYEQFIEPTKKYADIII 187
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Length = 218 |
| >gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 7e-15
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 42/210 (20%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+AG G+GK+T+A E++ ++ ++ D ++ LS
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41
Query: 169 AMEDPKEA------HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222
E+ +E H + F+ LL++ L++L+N SV P +D +++ +
Sbjct: 42 -HEELEERKNNNYDHP---DAFDFD--LLISHLQDLKNGKSVEIPVYDFKTHSRLKETVT 95
Query: 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA 282
V V+I++G D K++ + D K F++ D D + R ++R I +
Sbjct: 96 VY-PADVIILEGILALYD----KELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLES 150
Query: 283 KWRIE-YND--RPNAE-LIMKSKKNADLVI 308
I Y +P E I +K+ AD++I
Sbjct: 151 V--INQYLKFVKPMHEQFIEPTKRYADVII 178
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7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198 |
| >gnl|CDD|232890 TIGR00235, udk, uridine kinase | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-13
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+ G G+GK+T+A ++ ++ K+ ++ D ++ S L
Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLE----------------IVIISQDNYYKDQSHL- 50
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
M + K+ + P F+ LL LKNL+N + P +D+ ++ + +
Sbjct: 51 EMAERKKTNFDH--PDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE-PKD 107
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--VAKWR 285
VVI++G D + + + D K F++ LD + R ++R I+ G+ D + ++R
Sbjct: 108 VVILEGIMPLFD----ERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYR 163
Query: 286 IEYNDRPNAE-LIMKSKKNADLVI 308
RP E + +K+ ADL+I
Sbjct: 164 KTV--RPMYEQFVEPTKQYADLII 185
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Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207 |
| >gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 9e-10
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 30/212 (14%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G+ G GAGK+T V R I F + P D FH Y
Sbjct: 1 IIGVTGSSGAGKTT----VARTFVSI-------FGREGVPAAGIE---GDSFHRYDRFYM 46
Query: 169 --AMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDI 221
ED K A +P + LL K L+ GS P + G DP ++
Sbjct: 47 DLHPEDRKRAGNNHYSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPEL 106
Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD 280
+ G ++ +G L G + V+ + D K ++ D++ + ++R ++ G +
Sbjct: 107 IEG--ADILFYEG----LHGLYDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERGHSLE 160
Query: 281 VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311
I +P+ I DL + +
Sbjct: 161 AVTDSILRR-KPDYVNYICPQFSYTDLNFQRV 191
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In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197 |
| >gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-08
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 36/208 (17%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
I+G+AG G+GK+T+A+ + + +A V+P D ++ S L
Sbjct: 7 IIIGIAGGSGSGKTTVASTIYEEL---------------GDESIA-VIPQDSYYKDQSHL 50
Query: 168 DAMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224
E+ + H P F+ LL+ LK L+ ++ P +D+ ++ I V
Sbjct: 51 S-FEERVKTNYDH-----PDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE 104
Query: 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--V 281
V+I++G L D + + + D K F++ LD + R LKR ++ G+ + +
Sbjct: 105 -PKDVIILEGILLLED----ERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVI 159
Query: 282 AKWRIEYNDRP-NAELIMKSKKNADLVI 308
++ RP + + I SK+ AD++I
Sbjct: 160 NQYLSTV--RPMHLQFIEPSKRYADIII 185
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Length = 209 |
| >gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 54/180 (30%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF----------DSQV-------KPPDV 151
IVG++G +GK+TLA + + +I P + + ++ K DV
Sbjct: 1 IVGISGVTNSGKTTLA----KLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDV 53
Query: 152 ATVLPMDGFHLYLSQLDA-MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD 210
L M+ +S LD E K LR+ G+ P +
Sbjct: 54 LEALDMEAM---MSTLDYWRETGHFP-------------------KFLRSHGNENDPEKE 91
Query: 211 HGVGDPV---EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267
+ + D+L ++IVDG L+ K + +FD ++F+ V +T +R
Sbjct: 92 FIEDAQIEETKADLLGAEDLHILIVDGFLLYNY----KPLVDLFDIRYFLRVPYETCKRR 147
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This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187 |
| >gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 48/220 (21%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169
V + G +GK+T A E+ I K + +P A++ D FH
Sbjct: 25 VAIDGITASGKTTFADELAEEIKK-----------RGRPVIRASI---DDFH-------- 62
Query: 170 MEDPKEAHARRG---APWTFN-----PLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVED 219
+P+ RRG A + L L L G S D PV +
Sbjct: 63 --NPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHN 120
Query: 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKP 278
L+ + V+IVDG +L ++ ++D K F++ D + + +R KR G
Sbjct: 121 PPLLAAPNAVLIVDGTFLLRP-----ELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSY 175
Query: 279 PDVAKWRIEYNDR--PNAELIMKS---KKNADLVIKSIDI 313
+ K Y R P +L + K+ AD+VI + D
Sbjct: 176 EEAEK---MYLARYHPAQKLYIAEANPKERADVVIDNSDP 212
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Length = 223 |
| >gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
+VG+AGP G+GK+T A + R+N I P S D P DG + + S
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYYVPRKTPRDE--DGNYDFESI 57
Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
LD LL N L +L N V P +D G L
Sbjct: 58 LDL------------------DLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPP 98
Query: 227 HKVVIVDGNY 236
VVI++G Y
Sbjct: 99 SGVVILEGIY 108
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 53/167 (31%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+ + GPPG+GKSTLA ++ ++ V+ +D +
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLG-------------------IPVISLDDLLREEGLAE 41
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ + + ++IL L +
Sbjct: 42 LDDGELDDIDID----------------------------------LELLEEILDELAKQ 67
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST 275
++DG ++ + + ++R L+R
Sbjct: 68 EWVIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKRRLQRGRGE 114
|
Length = 114 |
| >gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
IVG++GP G+GKSTL+A +VR + ++ ++ +D YL+ D
Sbjct: 52 IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-------------LDDL--YLTHAD 96
Query: 169 AMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDD 220
+ ++ + RG P T +P L LN L + G V P FD G GD
Sbjct: 97 RLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQT 156
Query: 221 ILVGLQHKVVIVDG 234
+ + +VI++G
Sbjct: 157 QWIKFEVDIVILEG 170
|
Length = 300 |
| >gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 67/238 (28%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----L 164
I+G+AG GKST A V++ + WP + ++ T DGF LY L
Sbjct: 1 IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNV--------ELITT---DGF-LYPNKEL 47
Query: 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 223
+ M+ R+G P +++ LL LK++++ V P + H D + +
Sbjct: 48 IERGLMD-------RKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQT 100
Query: 224 GLQHKVVIVDG-NYL------------FLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
Q ++I++G N L F D ++ D EKW+I+ R LK
Sbjct: 101 VDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIK--------RFLK 152
Query: 271 ------------RHISTGKPPDVAK------WRIEYNDRPN-AELIMKSKKNADLVIK 309
H + A W+ N N E I+ ++ ADL+++
Sbjct: 153 LRETAFSDPDSYFHRYAKMSEEEAIAFAREVWK-NIN-LKNLRENILPTRNRADLILE 208
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220 |
| >gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
R I +VE+R D ALA+ LL AL H++G+ G PGAGKSTL + R
Sbjct: 21 RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74
|
Length = 323 |
| >gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 72/224 (32%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----- 163
I+G+AG G GKST +RR+ ++ D+ TV+ +D +H
Sbjct: 1 IIGVAGDSGCGKSTF----LRRLTSLF------------GSDLVTVICLDDYHSLDRKGR 44
Query: 164 -LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDD 220
+ + A+ DP+ + F+ L+ LK L+ ++ P ++H G DP E
Sbjct: 45 KETGITAL-DPRANN--------FD--LMYEQLKALKEGQAIEKPIYNHVTGLIDPPE-- 91
Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWK--DVSSMFD------EKWFIEVD-------LDTAM 265
L+ +V+++G + D V + D S D W I+ D L+ +
Sbjct: 92 -LIKPTK-IVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVL 149
Query: 266 QRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
+ R PD + I K+ AD+VI+
Sbjct: 150 ASIEARK------PDFEAY------------IDPQKQYADVVIQ 175
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273 |
| >gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 29/211 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLY 163
++GLA G GKST +RR+ ++ P K + DS D TV+ +D +H
Sbjct: 51 VIGLAADSGCGKSTF----MRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS- 105
Query: 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GVGDPVEDDI 221
LD KE P N L+ +K L+ +V P ++H G+ DP E
Sbjct: 106 ---LD-RTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--- 158
Query: 222 LVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKP 278
L K+++++G + D + V + D ++++ D ++R ++ G
Sbjct: 159 ---LIEPPKILVIEGLHPMYD----ERVRDLLDFSIYLDISDDVKFAWKIQRDMAERGHS 211
Query: 279 PDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
+ K IE I K+ AD+VI+
Sbjct: 212 LESIKASIEARKPDFDAYIDPQKQYADVVIE 242
|
Length = 395 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.002
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
++ + GPPG+GK+TLA + R +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGP 28
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 89 ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
A++ RL P SA V I+ L GP GAGKSTL A
Sbjct: 7 AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40
|
Length = 248 |
| >gnl|CDD|222000 pfam13238, AAA_18, AAA domain | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.004
Identities = 29/178 (16%), Positives = 51/178 (28%), Gaps = 65/178 (36%)
Query: 110 VGLAGPPGAGKSTLAAEVVRR----INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS 165
+ + G PG+GK+TLA E+ R + + + + + D + L D
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDED------- 53
Query: 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225
+ LL+ L E I
Sbjct: 54 --KLAK-------------------LLDKL----------------------EKIIEELA 70
Query: 226 QHKVVIVDG---NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD 280
+ + VI+DG V + D + ++R+ KR S K +
Sbjct: 71 EGENVIIDGHLAELELERFKDLVFV--------VLRADPEELLERLKKRGYSEEKISE 120
|
Length = 128 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 313 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.98 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.98 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.98 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.98 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.98 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.98 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.98 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.98 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.98 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.98 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.97 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.97 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.96 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.96 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.96 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.96 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.96 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.96 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.96 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.96 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.96 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.96 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.96 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.96 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.96 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.96 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.96 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.96 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.96 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.96 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.96 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.95 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.95 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.95 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.95 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.95 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.95 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.95 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.95 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.95 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.95 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.95 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.95 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.95 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.94 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.94 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.94 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.94 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.94 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.94 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.94 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.93 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.93 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.93 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.93 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.93 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.93 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.93 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.93 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.93 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.91 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.91 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.91 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.9 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.9 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.89 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.89 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.89 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.89 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.88 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.84 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.83 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.81 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 99.81 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.81 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 99.8 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.8 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.8 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.79 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.79 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.79 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.79 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.78 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 99.78 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 99.78 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.78 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.78 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.75 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 99.75 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.74 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.74 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.74 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.73 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.73 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 99.73 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 99.72 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.72 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.71 | |
| KOG2702 | 323 | consensus Predicted panthothenate kinase/uridine k | 99.7 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.69 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 99.69 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 99.69 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.69 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.67 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 99.66 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.64 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.64 | |
| PLN02348 | 395 | phosphoribulokinase | 99.58 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.57 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 99.55 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.55 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 99.53 | |
| COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 99.5 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 99.49 | |
| PRK07429 | 327 | phosphoribulokinase; Provisional | 99.48 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.48 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.46 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.46 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.45 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.4 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 99.4 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.39 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.39 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.36 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.35 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.34 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.34 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.3 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.29 | |
| cd02024 | 187 | NRK1 Nicotinamide riboside kinase (NRK) is an enzy | 99.24 | |
| PRK06696 | 223 | uridine kinase; Validated | 99.21 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.21 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.2 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.13 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.07 | |
| PRK07667 | 193 | uridine kinase; Provisional | 99.06 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 99.06 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.05 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.02 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.0 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.98 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.95 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.95 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.9 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.87 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.87 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 98.86 | |
| PLN03046 | 460 | D-glycerate 3-kinase; Provisional | 98.84 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.8 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.77 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.77 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 98.76 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.75 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.7 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.69 | |
| COG4240 | 300 | Predicted kinase [General function prediction only | 98.66 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.64 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.6 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.59 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.55 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.54 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.48 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.46 | |
| PRK13477 | 512 | bifunctional pantoate ligase/cytidylate kinase; Pr | 98.46 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.43 | |
| KOG4203 | 473 | consensus Armadillo/beta-Catenin/plakoglobin [Sign | 98.42 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.41 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.41 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.38 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.34 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.34 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.32 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.3 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.27 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.26 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 98.24 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 98.23 | |
| KOG2878 | 282 | consensus Predicted kinase [General function predi | 98.23 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.23 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.2 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.19 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.17 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.16 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.16 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.16 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.14 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.13 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.12 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.12 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 98.11 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.1 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.09 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.08 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.08 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 98.07 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.07 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.06 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 98.06 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=318.49 Aligned_cols=200 Identities=18% Similarity=0.234 Sum_probs=173.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+||+++||+|+||+.. +|++||++|.+||+++|+||||||||||||||+++.. |++|+|.++|...
T Consensus 1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence 3799999999999988 9999999999999999999999999999999999999 9999999999532
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
++.+|+|||+ |++++ ++|+.+|+.+.. ...+.++.+..+.+.++|+++| ...+.++.+|||||||||+||+||
T Consensus 74 ~~R~~vGmVFQ~-fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 74 KLRRKVGMVFQQ-FNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHHHhcCeeccc-ccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 3469999999 44443 699999999865 3566777777888999999999 456778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcCe---EEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.+++++++|+|+.-||+ ++++.+.++.+++ ++|||++..+.. |++ |++++.|+|+++...
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999 5566666666653 699999999987 776 889999988887653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=314.61 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=179.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+|.|+++. +++|+||+|++||+++++|||||||||+||||.++++ |++|+|.++|++.
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999887 9999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc----CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~LSgGekqRv~la~al~ 224 (313)
++.+||+-|..-.++ ++||.+|+.....+.++++....+++.++|+.++. ..++++.+|||||+|||.+++|++
T Consensus 74 Rr~IGYviQqigLFP--h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 74 RRKIGYVIQQIGLFP--HLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHhhhhhhhhcccCC--CccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 356999999855444 59999999999888888877778889999999984 457888899999999999999999
Q ss_pred cCccEEEEcCcccccChhhHH----HHHHhh----cCeEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHHhc
Q 021380 225 LQHKVVIVDGNYLFLDGGVWK----DVSSMF----DEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYN 289 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~~~~----~l~~l~----~~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~~~ 289 (313)
.++.++++|+|+--||+-.+. ++.++. .++||||||++++.+ |++ |+++..+.|++++.+
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~----- 226 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN----- 226 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-----
Confidence 999999999999999993333 333332 235799999999998 665 999999999998775
Q ss_pred CCchHHHHHhh
Q 021380 290 DRPNAELIMKS 300 (313)
Q Consensus 290 ~~~~~~~i~~~ 300 (313)
|..+|+..+
T Consensus 227 --Pan~FV~~f 235 (309)
T COG1125 227 --PANDFVEDF 235 (309)
T ss_pred --ccHHHHHHH
Confidence 677776654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=332.22 Aligned_cols=217 Identities=15% Similarity=0.187 Sum_probs=181.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++.|+++||+|.||+.. +++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|++.
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 46899999999999877 9999999999999999999999999999999999999 9999999999762
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
++.+++|||+.. ++ ++|||.+|++|++...+... ....+++.++|+.++ ...++++.+|||||+|||+||+||+.
T Consensus 76 kR~ig~VFQ~YA-LF-PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 76 KRPIGMVFQSYA-LF-PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred hcccceeecCcc-cC-CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 467999999944 33 36999999999988544333 345678899999988 45678888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHHHHHH----hhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHHhcC
Q 021380 226 QHKVVIVDGNYLFLDGGVWKDVSS----MFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYND 290 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~l~~----l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~~~~ 290 (313)
.+++|++|+|+.-||.++.+.++. +... .||||||.++++. |++ |++...|+|.++..+
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~------ 227 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER------ 227 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC------
Confidence 999999999999999955554444 3332 4799999999998 766 899999999998654
Q ss_pred CchHHHHHhhcCCCCEE
Q 021380 291 RPNAELIMKSKKNADLV 307 (313)
Q Consensus 291 ~~~~~~i~~~~~~aD~i 307 (313)
|...|+..+....+++
T Consensus 228 -P~~~fVA~FiG~~N~l 243 (352)
T COG3842 228 -PATRFVADFIGESNIF 243 (352)
T ss_pred -cchHHHHHHhCcceee
Confidence 7777776665555443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=309.48 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=159.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---CCCeE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVA 152 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~---~~~~i 152 (313)
.+++++++++.|++.. +|+||||+|.+||+++|+||||||||||||+|+|+.+ |++|+|.++|.. +...+
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 4799999999999876 9999999999999999999999999999999999999 999999999975 34569
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|+||+...+ +++||.+|+.++....+.+..+..+++.++|+.+|. ..++++.+|||||||||+||+|++..+++|
T Consensus 75 ~~vFQ~~~Ll--PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 75 GYVFQEDALL--PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred EEEeccCccc--chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 9999996533 489999999999888776666667789999999994 567888899999999999999999999999
Q ss_pred EEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+--||+ .+.+.+.+++. .++|||||.+++..
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 99999999999 34444444443 35799999999876
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=323.50 Aligned_cols=201 Identities=16% Similarity=0.158 Sum_probs=175.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.||+.. +|+++||+|+.||+++|+||||||||||||+|+|+.+ |++|+|.++|.+.
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56899999999999876 8999999999999999999999999999999999999 9999999999653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.+++|||+...++ +|||++|+.|++...+.++....+++.++.+.++ ...++++.+|||||||||++++|++.+
T Consensus 74 ~R~iamVFQ~yALyP--hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 74 KRGIAMVFQNYALYP--HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred HCCEEEEeCCccccC--CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 357999999954333 6999999999999998888888889999999988 456888999999999999999999999
Q ss_pred ccEEEEcCcccccChhhHH----HHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 227 HKVVIVDGNYLFLDGGVWK----DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~----~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++++++|+|+.-||..+.. ++.++.+ ..||||||..+++. |++ |++.+.|+|.++...
T Consensus 152 P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999994443 4444332 25899999999988 655 899999999998653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=309.49 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=173.0
Q ss_pred eEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--------
Q 021380 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-------- 147 (313)
||++++|+|.|... ...+.+|+||||+|++|+++||||.||||||||+|+|.++.+ |++|+|.++|.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 58999999999862 223459999999999999999999999999999999999999 999999999965
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.++.||++||+. .+.. ..||++|++|++...+.+++...+++.++|+.+|. ..+.++.+|||||||||+||+|
T Consensus 78 Lr~~R~~IGMIFQhF-nLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 78 LRQLRQKIGMIFQHF-NLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HHHHHhhccEEeccc-cccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHH
Confidence 235699999994 4443 47999999999999998888888899999999994 4567788999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhhcC--------eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~~~--------~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.+|++|+.|+.+.-||+++.+.+.+++.. +++|||.|+.+.+ |++ |++++.|+..++..
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9999999999999999999544444444332 4699999999987 665 99999998888754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=302.37 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=168.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----C
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----P 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~ 149 (313)
|++|+++|+++.|++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.+.|.+. .
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 56899999999999656 9999999999999999999999999999999999999 9999999988642 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
.+||||||.........+||+|.+..+... .+.+.+.+.+.+.++|+.++ ...++.+.+|||||+|||.||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 469999996422222248999988876322 22334556788999999999 457889999999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH---hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~~~ 284 (313)
+.+|++|++|||+..+|. .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++...
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~ 228 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence 999999999999999999 455555555543 4699999999988 665 788889999988653
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=301.69 Aligned_cols=202 Identities=17% Similarity=0.163 Sum_probs=172.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||+++|+++. +|+|+||+|++|++++|+||||||||||||+|+|+++ |.+|+|.++|.+.
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 689999999999888 9999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhh
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|.... ...+||.|.+.++..- ++.+...|.+.+.+.|+.++ ...++.+.+|||||||||.||+|
T Consensus 75 Ak~ia~vpQ~~~~--~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKKLAYVPQSPSA--PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhhEEEeccCCCC--CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 3579999999643 3358999999887542 22234456667888899988 45678899999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~ 287 (313)
++.++++|++|+|+..||. ++++.++++.++ +|+|.||++.+.+ +++ |++++.|.|.+++.....
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l 232 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENL 232 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHH
Confidence 9999999999999999999 677777777733 5799999999998 555 899999999988754433
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=302.56 Aligned_cols=208 Identities=18% Similarity=0.251 Sum_probs=175.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC---C------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---K------ 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~---~------ 147 (313)
+|.+++++|.|+... +++|||++|+.||.+||+||||||||||||+|+|++. |++|.|.++|. +
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997 3
Q ss_pred CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CC-CCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 148 ~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~-~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
..++|||+||+.. ++ ++|||.+|++|+..... .+ ......++.++|+.+. ...++++.+|||||+|||++|+|+
T Consensus 75 ~~R~VGfvFQ~YA-LF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYA-LF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechh-hc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh
Confidence 2357999999954 33 36999999999986542 22 2445667888888877 446788889999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHHHhhc----C----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHHh
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEY 288 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~~l~~----~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~~ 288 (313)
+..+++|++|+|+--||..+...++..+. . .+|||||.+++.+ |++ |++...|++.|+...
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~---- 228 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH---- 228 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC----
Confidence 99999999999999999966666665543 2 4799999999998 666 999999999988554
Q ss_pred cCCchHHHHHhh
Q 021380 289 NDRPNAELIMKS 300 (313)
Q Consensus 289 ~~~~~~~~i~~~ 300 (313)
|+..|+.++
T Consensus 229 ---P~s~fV~~f 237 (345)
T COG1118 229 ---PASRFVARF 237 (345)
T ss_pred ---CCccceecc
Confidence 666555554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=291.95 Aligned_cols=200 Identities=19% Similarity=0.264 Sum_probs=168.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.++|++++|+++||++. +++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|.++|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 45899999999999998 9999999999999999999999999999999999999 9999999999763
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+++|++||.+..+. .+||+||+.|+.+.+ ..++....+.+..-|+.+|.. .++++.+|||||++|++|
T Consensus 79 ~~~~ir~r~GvlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHhheeEEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 346999999986544 499999999987654 455555556666777888843 467788999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh-------hhHHHHHHhhc-CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE-------~~~~~l~~l~~-~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|+|++.++.+++.|+|+..||+ +++..+++.+. +.++||||++.+.. |++ |++++.|+++++..
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999 33333333333 25799999999887 555 89999999998865
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=289.12 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=172.1
Q ss_pred CeEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.+|+++||++.| +++. +|+||||+|++||+++|||+||||||||||+|+|+.. |++|+|.++|.+.
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 6666 9999999999999999999999999999999999999 9999999999652
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHH--------hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccC
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--------RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGe 213 (313)
++.+||+||+....+ .++|.+|+..+.. ..+...+.+...+.+.|++++. ....+..+|||||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~--r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVP--RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHHhceeEeccCCccc--ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 245999999954333 5899999887542 3456667778888999999994 4456778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
+|||+||++|+.++++++.|+|+.-||+ .+++.|+++... +|+..|+++.+.+ |++ ||++++|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9999999999999999999999999999 556666665542 4688899999998 877 899999999
Q ss_pred hHHHHHHHHh
Q 021380 279 PDVAKWRIEY 288 (313)
Q Consensus 279 ~e~~~~~~~~ 288 (313)
.++....+..
T Consensus 233 ~el~~~~~~~ 242 (258)
T COG3638 233 SELTDEALDE 242 (258)
T ss_pred hhhhHHHHHH
Confidence 8866554443
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=280.81 Aligned_cols=190 Identities=18% Similarity=0.131 Sum_probs=162.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+|.|++.. .+|+||||+|++||++.|+||||||||||+|+|.+..+ |++|+|+++|.+.
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999997543 39999999999999999999999999999999999999 9999999999762
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
++.||+||||.-.++ ++||+||+++++...|.++....+++.++|+.++.. .+..+.+|||||||||+||+|+
T Consensus 75 P~LRR~IGvVFQD~rLL~--~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLP--DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred chhhheeeeEeeeccccc--cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 457999999954443 589999999999999988888888999999999954 4456779999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHHHhhc-------CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~~l~~-------~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+..+.+|+.|+|+--||+..-..+.+++. .++++|||.+.+.. |++ ||++.
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 99999999999999999954444444443 25799999999887 554 66554
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=287.94 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=172.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|++|+++|+++.|+......++|++|||+|.+||++||+|++|||||||+++|+|+.+ |++|+|.++|...
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 4589999999999876544459999999999999999999999999999999999999 9999999999642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.+.+||||++.-.++.+||.+.+..+....+.+. ...++.++|+.++. ..++++.+|||||+||++||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 345899999998888888999998888877655443 33458899999994 3578888999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++..+++|++|+++..||- .+++.+.++.+. .+|||||+..+.. |++ |++++.++..++...
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999998 455555554433 4799999999987 665 889998888777654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=288.81 Aligned_cols=185 Identities=15% Similarity=0.096 Sum_probs=153.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------- 147 (313)
|++++||+|.|+.......+|+++||+|++||+++|+|||||||||||++|.|+.+ |++|.|.++|.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999754333559999999999999999999999999999999999999 999999999854
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CC-ccCCCCCccCCCcchhhh
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-VYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~-~~~~~LSgGekqRv~la~ 221 (313)
+.+.+|||||+...++ .+|+.||+.++....+.+......++..+++.++.. .. +++.+|||||||||+||+
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~--~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLP--DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHHhEEEECccCCCCC--CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 2346999999954443 599999999988776665444456677888887843 34 567799999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|++.++.+++.|+|+--||. .+++.+.++.+ .+|+||||.+.+..
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 99999999999999999999 45555555543 25799999999876
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=297.92 Aligned_cols=215 Identities=16% Similarity=0.213 Sum_probs=182.3
Q ss_pred CCeEEEccceeEcccccc--------------------ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc
Q 021380 75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI 134 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~--------------------~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~ 134 (313)
+..|+++||+|-||.++. .+.-++|+||+|++|||+.|+|-||||||||+|+|.++++
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-- 79 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-- 79 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence 446899999999986531 1335789999999999999999999999999999999999
Q ss_pred CCCCceeeeCCCCC------------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--c
Q 021380 135 WPQKASSFDSQVKP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--N 200 (313)
Q Consensus 135 ~p~~G~i~~~~~~~------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~ 200 (313)
|++|+|.++|.+. .+.+++|||..-.++ +.||.+|..|+.+..|.++.+..+++.++|+.+| .
T Consensus 80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP--hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 80 -PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG 156 (386)
T ss_pred -CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc--chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh
Confidence 9999999999762 356999999944333 6899999999999999998888889999999999 4
Q ss_pred CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhh----cCeEEEEcChHHHHH---HHH
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~----~~~i~vtHd~~~~~~---rvi 269 (313)
..++++.+|||||||||.||+|++.++.+|++|+++.-||+ ++.++|.++. ++++|||||++++++ |+.
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 56778889999999999999999999999999999999999 4444444443 346799999999999 665
Q ss_pred ----hhhhccCChhHHHHHHHHhcCCchHHHHHhhc
Q 021380 270 ----KRHISTGKPPDVAKWRIEYNDRPNAELIMKSK 301 (313)
Q Consensus 270 ----gr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~ 301 (313)
|+++..|+|+|++.+ |..+|+..+-
T Consensus 237 imkdG~ivQ~Gtp~eIl~~-------PAndYV~~Fv 265 (386)
T COG4175 237 IMKDGEIVQVGTPEEILLN-------PANDYVRDFV 265 (386)
T ss_pred EecCCeEEEeCCHHHHHcC-------ccHHHHHHHH
Confidence 999999999999765 6666665543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=298.61 Aligned_cols=201 Identities=18% Similarity=0.221 Sum_probs=174.6
Q ss_pred CCeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
+.+++++||+|.|+ ++. +|+||||+|++|+++||+||||||||||+|+|+|++. |++|+|.++|.+..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 45789999999999 577 9999999999999999999999999999999999999 99999999996542
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCCcchhhhhcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekqRv~la~al~ 224 (313)
+.+||++|++..+ +.+|++|++.+....++.+...+.+++.++++.++... ++++..||+|||||+.||.|++
T Consensus 75 ~~~~~igy~~~~~~~~--~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 75 KVRRRIGYVPQEPSLY--PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHhheEEEccCCCCC--ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 4699999997633 36999999999999887665455678899999999665 6778899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
.+|+++++|+|+..||+ .+++.|+++.+. ++++||.++++.. |++ |++++.|++.++...
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999 667777777653 4589999999988 555 999999988876544
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=284.73 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=174.8
Q ss_pred CeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++++++++++.|++. . +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.+.
T Consensus 2 ~~i~~~~l~~~y~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 2 RMIEAENLSFRYPGRKA----ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSL 74 (235)
T ss_pred ceEEEEEEEEEcCCCce----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhH
Confidence 579999999999775 4 9999999999999999999999999999999999999 9999999998652
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.+||++|++..... .-||.+.++|+..+.+.+......++.++++.++. ..++.+..|||||||||+||.++
T Consensus 75 ~~~~~~vG~VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HHhhcceEEEEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 3579999999855443 25999999999999998877677788999999984 46778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
+..+++|++|||+..||. .+++.+.++... +|++|||++.+.. |++ |+++.+|+|.++..+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999 455555555433 5799999999988 555 8999999998887653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=273.45 Aligned_cols=200 Identities=18% Similarity=0.148 Sum_probs=171.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
||++.+++|+|+... .+++||||++++|+++||+|||||||||+||+|++++. |++|.|.++|.+. +
T Consensus 1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 589999999999854 38999999999999999999999999999999999999 9999999999763 3
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.+|+++-... ++ ..||++||+.|+..+++........++.++.+.|+ ...++.+.+||.||||||+||+|++++|
T Consensus 75 r~IGVl~~e~g-lY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 75 RKIGVLFGERG-LY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred hhcceecCCcC-hh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 56888884432 22 35999999999999999887777788888888888 4568899999999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||- .+.+.+.++... +||.||+++++.. |++ |.++..|.++++.+.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999998 344444444432 5799999999987 665 999999999888665
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=302.29 Aligned_cols=200 Identities=14% Similarity=0.167 Sum_probs=167.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||++.|++.. +|+|+||++++|++++|+|||||||||||++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998876 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...++ ++|+.+|+.++...++.+......++.++++.++. ..++++.+|||||||||+||++++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 75 KRDYGIVFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HCCEEEEeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 246999999954333 59999999998765554444445678889998884 35778889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999984 4444444433 25799999999876 555 99999999888764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=302.00 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=167.5
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
.|++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 367899999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ ++|+.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 76 ~~r~ig~vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 76 QQRDICMVFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HHCCEEEEeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 256999999964333 58999999998765554443445677888888884 3567888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHH----HHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWK----DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~----~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||....+ .|.++.. .+|+||||.+++.. |++ |+++..|++.++..
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999994444 4444432 25799999999876 555 89999999888754
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=303.56 Aligned_cols=200 Identities=16% Similarity=0.121 Sum_probs=166.0
Q ss_pred CCeEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
|.+|+++||++.| ++.. +|+|+||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 6666 9999999999999999999999999999999999999 9999999998643
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ ++|+.+|+.++...++.+......++.++++.++. ..++++.+|||||||||+||+|++.
T Consensus 74 ~~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 74 ADRDIAMVFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred HHCCEEEEeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999965433 58999999998765544433334567888888884 4577888999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999984 4444444433 25799999999876 554 89999999988754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=269.65 Aligned_cols=203 Identities=13% Similarity=0.112 Sum_probs=162.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~---- 148 (313)
++.++++||++.||++. +|+|||++|+++.++|||||+|||||||||++..+.... .-.+|+|.++|.+.
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 45799999999999988 999999999999999999999999999999999987611 11349999998762
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh------cCCCccCCCCCccCCCc
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------NQGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~~~~~~LSgGekqR 216 (313)
++++|+|||.+..++ ++++||+.++.+..|...+.-.+.++..|+... +..++....|||||+||
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 356999999976443 899999999999887655333444555554433 34556677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++||++++..+.+|++|+|+.-||+ .+-+.|.++.+. +|+|||+|..+.+ +.. |++++.|+++++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 9999999999999999999999999 333344444433 5799999999887 333 99999999988865
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 238 ~ 238 (253)
T COG1117 238 N 238 (253)
T ss_pred C
Confidence 4
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=300.39 Aligned_cols=201 Identities=17% Similarity=0.186 Sum_probs=166.3
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++++|+++|+++.|++.. +|+++||+|++|++++|+|||||||||||++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA 83 (375)
T ss_pred CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 456899999999998776 9999999999999999999999999999999999999 9999999998652
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|+||+...++ ++|+.+|+.++...++.+......++.++++.++. ..++++.+|||||+|||+||++++.
T Consensus 84 ~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 84 ENRHVNTVFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred HHCCEEEEecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999964333 58999999998665544333334567788888874 3577888999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||.. +++.|.++.+ .+|+||||.+++.. |++ |++++.|++.++..
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999994 4444444433 24799999999876 554 89999999888754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=293.02 Aligned_cols=201 Identities=17% Similarity=0.158 Sum_probs=167.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.++|+++||+|.|++.. +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence 35799999999998776 9999999999999999999999999999999999999 9999999998753
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ .+|+.+|+.+....++.+......++.++++.++. ..++++..||+|||||++||+|++.
T Consensus 78 ~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 78 ARQRVGVVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHhcEEEEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 246999999965333 58999999987666654433334566788888874 3467788999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++++|++|+|+..||. .+++.|.++.+. +|++||+++++.. |++ |++++.|+++++...
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999 455666665432 4699999999876 554 899999999888654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=296.21 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=164.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+|.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 58999999999632111239999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 236999999954333 48999999987765554444445667888999884 35678889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||+ .+++.|.++.+ .+|++|||++++.+ |++ |++++.|++.++..
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999 44455555543 24799999999876 554 89999999887753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=273.20 Aligned_cols=210 Identities=17% Similarity=0.183 Sum_probs=170.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
|.+|.++|+.|+|+.+. ++++|||+|++||+|||+|||||||||.+.|+.|+.+ |++|+|.+++.+..
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 56799999999999988 9999999999999999999999999999999999999 99999999998743
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC--ccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.-+||++|++..+- .+||.+|+....+......+ ....++.++|+.|.. ..+.+...||||||+|+.||+
T Consensus 75 ~RArlGigYLpQE~SIFr--~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 75 KRARLGIGYLPQEASIFR--KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred HHhhcCcccccccchHhh--cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 23899999965433 59999999988776653333 334457789999883 456677799999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhcCe---EEEEcChHHHHH---HH--H--hhhhccCChhHHHHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RV--L--KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~~---i~vtHd~~~~~~---rv--i--gr~v~~G~~~e~~~~~~~ 287 (313)
|++.+++.+++|+|+...|+ ++.+.+..+.+.+ ++.+|+..+.+. |. + |++++.|+|++++....-
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 99999999999999999999 4444444444443 367799888776 33 2 999999999999876444
Q ss_pred hcCCch
Q 021380 288 YNDRPN 293 (313)
Q Consensus 288 ~~~~~~ 293 (313)
+..+..
T Consensus 233 r~~YLG 238 (243)
T COG1137 233 RRVYLG 238 (243)
T ss_pred hhhccc
Confidence 333333
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=294.95 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=167.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++++|+++||+|.|++.. +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 38 ~~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARAR 110 (340)
T ss_pred CceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchH
Confidence 356899999999999877 9999999999999999999999999999999999999 9999999998653
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...++ .+|+.+|+.+....++.......+.+.++++.++.. .++++.+||||||||++||++++
T Consensus 111 ~~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 111 LARARIGVVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred HHhccEEEEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 245999999964333 589999998766555543333344566788887743 57788899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
.+++++++|+|+..||+ .+++.|.++... +|++||+++++.. |++ |+++..|+++++...
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999 455555555332 4799999999876 554 899999999888654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=296.17 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=166.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 355899999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ ++|+.+|+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 89 ~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 89 YQRPINMMFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred HHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 346999999965433 58999999998765544433344567788888884 3577888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHHH----HHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWKD----VSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~----l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||....+. +.++.. .+|+||||++++.. |++ |+++..|++.++..
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999954443 334433 25799999999876 554 89999999988754
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=294.59 Aligned_cols=199 Identities=13% Similarity=0.165 Sum_probs=166.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC--ceeeeCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~--G~i~~~~~~~------ 148 (313)
.|+++||+|.|++.. +|+|+||+|.+|++++|+|||||||||||++|+|+++ |++ |+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 488999999998766 9999999999999999999999999999999999999 999 9999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++|+++|+.++...++.+......++.++++.++. ..++++.+|||||||||+||++++.+
T Consensus 78 ~r~ig~vfQ~~~l~--p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALF--PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 24699999996433 358999999998766554443445567888888884 35778889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc-----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD-----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~-----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |+++..|++.++..+
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999994 4444444433 24799999999876 555 899999999888643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=294.96 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=164.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45799999999998776 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.+.....+++.++++.++.. .++++.+|||||||||+||++++.+
T Consensus 74 ~~~i~~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~ 151 (369)
T PRK11000 74 ERGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (369)
T ss_pred HCCEEEEeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999964333 589999999876554433333345678888888843 4677889999999999999999999
Q ss_pred ccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||... ++.|.++.. .+|+||||++++.. |++ |+++..|++.++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999944 444455433 25799999998876 544 88888898887753
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=271.43 Aligned_cols=200 Identities=21% Similarity=0.201 Sum_probs=165.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
+++++++|+|+||+.. +++||||++++|+++|||||||||||||+++|+|.++ |++|+|.++|.+..
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5799999999999988 9999999999999999999999999999999999999 99999999998632
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhc-------CCC-----CCccHHHHHHHHHHhhc--CCCccCCCCCcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 212 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-------~~~-----~~~~~~~~~~~l~~l~~--~~~~~~~~LSgG 212 (313)
.-++--||..-.++ .|||.||+......+ +.+ .....+++.++|+.++. ..+.+..+||+|
T Consensus 76 iar~Gi~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 76 IARLGIARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHhccceeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 22666788864333 599999998864422 111 22345567888999984 456677899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
+|+|+.||+||+.+|++|++|+|...+.. ++.+.|+++.+. +++|.||++.+.. |++ |++++.|+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 99999999999999999999999999998 555566666542 3599999999998 554 99999999
Q ss_pred hhHHHHH
Q 021380 278 PPDVAKW 284 (313)
Q Consensus 278 ~~e~~~~ 284 (313)
|+++...
T Consensus 234 P~eV~~d 240 (250)
T COG0411 234 PEEVRNN 240 (250)
T ss_pred HHHHhcC
Confidence 9998654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=290.29 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=162.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 589999999998776 9999999999999999999999999999999999999 9999999998653 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.++|++|+...++ ++|+.+|+.+..... +.+.....+++.++++.++. ..++++.+|||||||||+||++++
T Consensus 75 ~i~~v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 6999999954333 589999999876532 11222334567888888884 356788899999999999999999
Q ss_pred cCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||... ++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999944 444444433 24799999999887 554 89999999888754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=266.98 Aligned_cols=199 Identities=17% Similarity=0.168 Sum_probs=175.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCeE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 152 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~i 152 (313)
+|++++|+|+||++. +++||||++++|++.|++|+|||||||++|+|+|+++ |++|+|.|+|.+. ..+|
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999998 9999999999999999999999999999999999999 9999999999764 3569
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
||+|...-.++ .+||.|.+.|.+.+.|.+.++...++..+|+++. ....+++.+||.|++|++.+..++++.+.++
T Consensus 75 GyLPEERGLy~--k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 75 GYLPEERGLYP--KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred ccChhhhccCc--cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 99999865444 4999999999999999998888888999999998 4556788899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHH----HhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVS----SMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~----~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++|+|+..||+-..+.|+ ++.+. +||.||.|+.+.+ +++ |+.|.+|+..++...
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999994444333 33333 5799999999988 665 899999998888664
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=284.52 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=161.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
+|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 699999999998776 9999999999999999999999999999999999999 9999999998642 3
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+....++........++.++++.++.. .++++.+||||||||++||++++.++
T Consensus 77 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDP--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 46999999964332 489999998755444433222234566778877743 46778899999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|+++++...
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999994 4445555432 24799999998876 554 888889988887654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=285.78 Aligned_cols=209 Identities=14% Similarity=0.147 Sum_probs=164.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-~p~~G~i~~~~~~~~---- 149 (313)
|.+|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .|++|+|.++|.+..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 557999999999976322234999999999999999999999999999999999999610 028999999986521
Q ss_pred --------CeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCC
Q 021380 150 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 --------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekq 215 (313)
+.++|++|+++...++.+++.+++....... +.......+++.++|+.++.. .+.++.+|||||+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2599999997543455688888776654432 223233456678889998853 35678899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
||+||+|++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.+ |++ |++++.|++.+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 45555555543 25799999999865 555 99999999888
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=291.62 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=164.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|++|+++||++.|+++. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 45899999999999877 9999999999999999999999999999999999999 9999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.+....+ +.....+.+++.++++.++.. .++++.+||||||||++||
T Consensus 74 ~~~~~ig~v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 74 AASRRVASVPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHhcceEEEccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 245999999965433 489999988754321 111233456678888888843 4677889999999999999
Q ss_pred hhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++++.++++|++|+|+..||. .+++.|+++.+ .+|++|||++++.+ |++ |+++..|+++++.
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999 45556665543 24799999999976 555 8999999998864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=270.62 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=155.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 47899999998766 9999999999999999999999999999999999999 9999999988542 23
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+...++ .+|+.+|+.+....++.......+.+.++++.++.. .+.++.+|||||+||++||++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 74 RIGIVFQDLSVDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred cEEEecCCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965332 479999998865554433223345677888888743 466788999999999999999999999
Q ss_pred EEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 229 VVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 229 ~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999994 3444444432 24799999998876 443 77777776554
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=284.56 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=163.9
Q ss_pred CCeEEEccceeEccccc---------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~---------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
.++|+++||++.|+... ....+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 46899999999996311 12348999999999999999999999999999999999999 9999999998
Q ss_pred CCC-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCC
Q 021380 146 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSF 209 (313)
Q Consensus 146 ~~~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~L 209 (313)
.+. .+.++|++|++....++.+|+.+|+.+....+. .......+++.++++.++.. .++++.+|
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 652 245999999974223345899999988654432 22223345667888888852 46788899
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
||||+||++||++++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998 34455555433 24799999999876 554 89999
Q ss_pred cCChhHHHH
Q 021380 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~e~~~ 283 (313)
.|++.++..
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 998887754
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=272.59 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=155.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....+ +.......+++.++++.++.. .++++.+|||||+||++||+++
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 74 RLRRRMGMLFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHhcceEEEccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 235899999964333 479999998764432 122222234567788888743 4667789999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||. .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999998 34445555432 24799999998765 444 7888888776653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=285.94 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=160.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||+++|++......+|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 58999999999721001129999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+....++.+.....+++.++++.++.. .++++.+||||||||++||+++
T Consensus 78 ~~~~~~ig~v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHhcCEEEEeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 245999999965333 489999999876655543333345677888888743 4567789999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.++++|++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|.+.++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999 44555555432 25799999998876 544 8888888887764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=291.96 Aligned_cols=207 Identities=19% Similarity=0.194 Sum_probs=172.6
Q ss_pred CCCeEEEccceeEcccc-------ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~-------~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
..++++++||+|.|... ...+.+++||||+|.+||++||+|+||||||||.|+|+|+++ |++|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 45689999999999741 123568999999999999999999999999999999999999 99999999886
Q ss_pred C----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 147 ~----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
+ ..+.+.++|||++...++.+||.+.+......+... .....+++.++++.++.. .++++++||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 5 124689999999988888999999999887755432 233345688889999843 57889999999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
||||++||+|++.++++++.||++.-||. .+++.|.++.++ .+|||||++.+.. |++ |++++.|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 99999999999999999999999999999 445555555443 4799999999988 665 99999997
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
.+++..
T Consensus 514 ~~~v~~ 519 (539)
T COG1123 514 TEKVFE 519 (539)
T ss_pred HHHHhc
Confidence 666654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=282.18 Aligned_cols=206 Identities=15% Similarity=0.138 Sum_probs=164.6
Q ss_pred CCeEEEccceeEccccc------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC
Q 021380 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~ 148 (313)
+++|+++||++.|+... ....+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 46899999999996311 01349999999999999999999999999999999999999 9999999998652
Q ss_pred -----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccC
Q 021380 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 -----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGe 213 (313)
.+.++|++|+++...++.+++.+++.+..... +.......+++.++++.++.. .+.++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 23599999997544455689988887655433 223233345678889988853 467888999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
+||++||+|++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999998 44445554433 24799999999876 554 999999998
Q ss_pred hHHHH
Q 021380 279 PDVAK 283 (313)
Q Consensus 279 ~e~~~ 283 (313)
.++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88765
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=279.75 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=164.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
+|+++|++|+|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 589999999998776 9999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++.. .++++..||||||||++||++++.++
T Consensus 75 ~~ig~~~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 75 RNIGYLPEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred hceEEecCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 35999999965333 489999999877666544333345677888888843 46788899999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||.. +++.+.++.. .+|++||+++++.. |++ |+++..|+++++...
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999994 4445544432 24799999998876 554 899999998887654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=273.43 Aligned_cols=208 Identities=16% Similarity=0.163 Sum_probs=170.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~------- 147 (313)
+|+++||+..|......+.+++||||+|++||++||+|.|||||||+.+.|+|+++. ..-.+|+|.++|.+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999997643345599999999999999999999999999999999999961 01256899999974
Q ss_pred -----CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-C-CCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCC
Q 021380 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (313)
Q Consensus 148 -----~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekq 215 (313)
+.+.++++|||+....++.+++.+.+........ . ..++..+++.++|+.++.. .+.++.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2457999999988777888899888877766432 2 2344566788999999943 25688899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
||.||.|++.++++|+.|+|+.-||- ++++.|.++.++ .||||||+..+.+ |++ |++|+.|+..+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999998 455555555442 4799999999888 665 99999999998
Q ss_pred HHHH
Q 021380 281 VAKW 284 (313)
Q Consensus 281 ~~~~ 284 (313)
+..+
T Consensus 241 i~~~ 244 (316)
T COG0444 241 IFKN 244 (316)
T ss_pred HhcC
Confidence 8764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=252.75 Aligned_cols=197 Identities=15% Similarity=0.175 Sum_probs=164.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCe
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDV 151 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~ 151 (313)
|.++.+++++..|+++. ..+|+|+|++|.+||.++++||||||||||+++++|+.. |..|+|.+++... ...
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 56789999999998764 348999999999999999999999999999999999999 9999999998752 233
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
-|+|||++-.++ ++++.+|++|+....|.++....+.+.+++..++ ...++++-+||||||||+.||+|++.+++.
T Consensus 76 rgvVFQ~~~LlP--Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 76 RGVVFQNEALLP--WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ceeEeccCccch--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 578999976544 7999999999999999988877888889999988 345677779999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH------hhhhccCCh
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL------KRHISTGKP 278 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi------gr~v~~G~~ 278 (313)
|++|+|+--||- .+.+.+.+++.. +++||||++++.- |++ ||+++.-++
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999988887 444444454432 4699999999876 544 677765433
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=276.75 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=161.5
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|++... ...+|+||||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999975210 1239999999999999999999999999999999999999 9999999998542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~ 221 (313)
...++|++|++..... ..|+.+|+.+.....+.......+++.++++.++.. .++++..|||||+||++||+
T Consensus 79 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 2358999998522222 369999998876555544333345677888888853 46778899999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++.++++|++|+|+..||. .+++.|.++.. .+|++|||++++.. |++ |++++.|.+.++..
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999 44445555432 24799999998865 554 88889998888754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=260.94 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=165.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||+..||... +|++|||++++||+++|+|+||+|||||||+|+|+++ +.+|+|.++|.+..
T Consensus 1 ~~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 1 APMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPH 73 (237)
T ss_pred CCceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHH
Confidence 35899999999999887 9999999999999999999999999999999999999 99999999998743
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al 223 (313)
.-++|+||....++ .|||.||+..+...... ....+.+.+.+++-.+....+++..+|||||||.++||+|+
T Consensus 74 ~r~r~Gi~~VPegR~iF~--~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 74 ERARLGIAYVPEGRRIFP--RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred HHHhCCeEeCcccccchh--hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 34899999865444 59999999987554322 11122455666666777778889999999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+..+++|++|+|...|-+ ++.+.|+++.+. +++|.++...++. |.+ ||++..|+.+++...
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999998 455555555542 4699999999887 433 999999998887643
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=266.88 Aligned_cols=194 Identities=18% Similarity=0.193 Sum_probs=154.5
Q ss_pred EEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++||++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence 468999999976 55 9999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|++..+. .+|+.+|+.+....++.+.....+++.++++.++. ..+.++.+||+||+||++||++++.+
T Consensus 74 ~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 74 RQSLGYCPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred hhhEEEecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 235899999864332 47999999886655443322233456778888774 34567789999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. +++ |++++.|++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999994 4444444433 25799999998865 443 77777776654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=268.56 Aligned_cols=200 Identities=17% Similarity=0.172 Sum_probs=156.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++|+++.|++.....++|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999865000129999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....++.........+.++++.++.. .++++..|||||+||++||+++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (233)
T cd03258 78 RKARRRIGMIFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL 155 (233)
T ss_pred HHHHhheEEEccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 235899999965333 489999998765444332222344567788888743 4567789999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
+.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |++++.|++.++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999993 4445554432 24799999998765 444 788887876654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=266.31 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=145.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988642 245
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .++++.+||||||||++||++++.++++
T Consensus 74 i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999964333 479999998765443322222334567788888743 3567789999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||. .+++.|.++.+ .+|++|||++++..
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999999999998 44455555432 25799999998764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=279.85 Aligned_cols=209 Identities=11% Similarity=0.138 Sum_probs=161.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-~p~~G~i~~~~~~~----- 148 (313)
|++|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 568999999999953211223999999999999999999999999999999999998510 14899999998642
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc---CC--CC-CccHHHHHHHHHHhhcCC-----CccCCCCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSFD 210 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~---~~--~~-~~~~~~~~~~l~~l~~~~-----~~~~~~LS 210 (313)
.+.++|++|++....++.+|+.+++.+....+ +. .. ....+++.++|+.++... +.++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 13599999997544455688988887543221 10 01 123456788899988542 56778999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhcc
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~ 275 (313)
|||+|||+||+|++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999998 44555555443 25799999999976 554 999999
Q ss_pred CChhHHHH
Q 021380 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~e~~~ 283 (313)
|++.++..
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 99888754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=269.06 Aligned_cols=197 Identities=17% Similarity=0.234 Sum_probs=156.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 589999999998766 9999999999999999999999999999999999999 9999999988542 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCC----CCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.++|++|++..++ .+|+.+|+.+.....+. ......+.+.++++.++.. .++++.+|||||+||++||++++
T Consensus 75 ~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 5899999965332 47999999876443322 1111234566778888743 45677899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.+++++++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++ |+++..|+++++.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999994 4444444432 24799999998765 444 7888888877653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=279.33 Aligned_cols=207 Identities=15% Similarity=0.142 Sum_probs=163.4
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC--
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~-- 148 (313)
.+++|+++||++.|+.......+|+||||+|++||++||+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 45689999999999632112339999999999999999999999999999999999998 75 99999999652
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC-----CCccCCCCCcc
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHG 212 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgG 212 (313)
.+.++|++|++....++.+++.+++.+....++ .......+++.++|+.++.. .+.++.+||||
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 136999999975444556899888876654432 22222345677888888743 24577899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|+||++||++++.++++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999 34444544433 25799999999875 554 99999999
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
+.++..
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 888764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=284.42 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=157.0
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------------CCeE
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVA 152 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------------~~~i 152 (313)
|.|+++. +|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4677776 9999999999999999999999999999999999999 9999999999652 3469
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|+...++ ++|+.+|+.+.....+.+.....+++.++++.++. ..++++.+|||||||||+||+|++.++++|
T Consensus 74 ~~v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 74 GMVFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred EEEECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965433 58999999988766655444445677888998884 356778899999999999999999999999
Q ss_pred EEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 231 IVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|+|+..||.. +.+.+.++.. .+||||||++++.. |++ |+++..|+++++..
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999994 4444444432 25799999999876 554 89999999888754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=273.04 Aligned_cols=199 Identities=13% Similarity=0.172 Sum_probs=158.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
+++|+++||++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 46899999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.+..... ..........+.++++.++.. .++++.+||||||||++||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hHHHHhhcEEEEecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 235899999964333 479999998754322 112122234566778888743 4667789999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. +++ |+++..|++.++.
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999994 4444554432 24799999998765 444 7888888877664
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=245.46 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=158.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------- 147 (313)
+|++++++|..+.......+|++|+|.|++||.++|+||+|||||||+-+++|+.. |++|+|.+.|++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999887777779999999999999999999999999999999999999 999999998875
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
+.+.+|+|||.....+ .||..||+..+..+.+.........+.++|+.+|.. ...++.+|||||+|||+||+|
T Consensus 83 A~~R~~~vGfVFQSF~Lip--~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 83 AALRARHVGFVFQSFHLIP--NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhhccceeEEEEeeeccc--cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 3457999999944333 599999999999988755445566788999999954 456777999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhh----cC----eEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~----~~----~i~vtHd~~~~~~ 266 (313)
++..+++|+.|+|+=-||-.+-+.+.+++ .+ .|+||||...+.+
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 99999999999999999985555444443 22 4799999999887
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=264.21 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=146.1
Q ss_pred eEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
||+++|+++.|++ +. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP----ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred CeEEEEEEEEecCCCee----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChh
Confidence 4889999999964 34 8999999999999999999999999999999999999 9999999998642
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||+
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred HHHHHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 135899999964333 47999999887554433222234567788888874 346677899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999994 4444444432 25799999998764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=269.47 Aligned_cols=199 Identities=14% Similarity=0.175 Sum_probs=157.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|+||+++||++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999987532
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekq 215 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+.......+.+.++++.++.. .+.++.+|||||+|
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q 151 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence 235899999964333 47999999875332 2222222334567788888743 45677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
|++||++++.+++++++|+|+..||.... +.|.++.+ .+|++|||++.+.. |++ |+++..|+++++
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999443 44444433 24799999998765 444 888888887766
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 232 ~ 232 (250)
T PRK11264 232 F 232 (250)
T ss_pred h
Confidence 4
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=277.50 Aligned_cols=202 Identities=12% Similarity=0.121 Sum_probs=161.7
Q ss_pred eEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 589999999997531 11238999999999999999999999999999999999999 9999999975421
Q ss_pred -------------------------CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-
Q 021380 149 -------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ- 201 (313)
Q Consensus 149 -------------------------~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~- 201 (313)
.+.++|++|++. .++ ..|+.+|+.++....+.+.....+++.++++.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF--EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc--cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh
Confidence 235899999852 233 269999999876665554444456678888988853
Q ss_pred --CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH
Q 021380 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 202 --~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi 269 (313)
.++++.+||||||||++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 46778899999999999999999999999999999999993 4444444433 24799999998766 555
Q ss_pred ----hhhhccCChhHHHH
Q 021380 270 ----KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ----gr~v~~G~~~e~~~ 283 (313)
|++++.|.+.++..
T Consensus 237 vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEECCEEEEECCHHHHhc
Confidence 89999999888654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=267.43 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=147.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999752111228999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++.. .+..+.+||||||||++||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HHHHHhccEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 135899999964333 479999998765433322222345677888888843 35677799999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999999999999999993 4445555432 24799999998765
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=284.19 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=149.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------------CCeEEEEeccCCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVATVLPMDGFHLY 163 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------------~~~i~~v~q~~~~~~ 163 (313)
+|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|+...++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 7999999999999999999999999999999999999 9999999998642 135999999965433
Q ss_pred cccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 164 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
.+|+.+|+.+.....+.+.....+++.++++.++. ..++++.+||||||||++||++++.++++|++|+|+..||.
T Consensus 120 --~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~ 197 (400)
T PRK10070 120 --HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP 197 (400)
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 48999999987665554433334567788888884 34677889999999999999999999999999999999999
Q ss_pred h----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 242 G----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 242 ~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
. +++.|.++.. .+|++|||++++.. |++ |+++..|+++++..
T Consensus 198 ~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 198 LIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 4 4444444432 25799999999876 554 88888888877643
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=275.21 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=161.1
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++... ...+|+||||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974210 1239999999999999999999999999999999999999 9999999998643
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++ ..|+.+|+.+.....+.+.....+++.++++.++.. .++++.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF--EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh--hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 135899999852 233 269999998876554443333345677888888853 366788999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999 44445555432 25799999999876 555 88888998887653
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=248.78 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=159.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
||.+++|.+.|+..+ =.++++|+.||+++|+||+|||||||+++|+|++. |.+|+|+++|.+. .+
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 467899999998754 25788999999999999999999999999999999 9999999999762 34
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
-+.++||+...+. ++||.+|+.++..-.-.-...+.+++..++..+| ...++.+.+|||||||||++|++++.+-.
T Consensus 72 PVSmlFQEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 72 PVSMLFQENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred Chhhhhhccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 5899999965433 6999999987643111112456778889999998 34567788999999999999999999999
Q ss_pred EEEEcCcccccChhhHHHHH----HhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 229 VVIVDGNYLFLDGGVWKDVS----SMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~~l~----~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++++|+|+.-||+.++.++. +++++ .+||||.++.+.+ |++ ||+.+.|...++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999995555444 44443 4799999999887 555 999999988887643
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=266.06 Aligned_cols=193 Identities=14% Similarity=0.108 Sum_probs=152.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCceeeeCCCCC----
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll-----~~~~p~~G~i~~~~~~~---- 148 (313)
|+++||++.|+++. +|+|+||+|.+|++++|+||||||||||+++|+|++ + |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 47899999998776 999999999999999999999999999999999999 8 9999999998642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhcCC--Ccc--CCCCCccCCCcc
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDPV 217 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~--~~~--~~~LSgGekqRv 217 (313)
.+.++|++|+... + .+|+.+|+.+.....+.... ...+++.++++.++... +.. +.+|||||+||+
T Consensus 74 ~~~~~~~~~i~~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred hHHHHHHhhEEEEecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence 2358999999643 3 37999999876544332211 12455677888887432 344 479999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |++++.|++.+
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999993 4444544443 35799999998765 444 77777776544
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=273.20 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=159.4
Q ss_pred eEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 689999999997421 01128999999999999999999999999999999999999 9999999998642
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
...++|++|++. .++ .+|+.+|+.+....++.......+++.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 135899999852 223 379999998765444332223344677888888853 367788999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||. .+.+.|.++.+ .+|++|||++.+.. |++ |+++..|++.++..
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999 34445544432 24799999999876 554 88888898887653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=265.61 Aligned_cols=199 Identities=17% Similarity=0.124 Sum_probs=158.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
+|+++|+++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 488999999998766 9999999999999999999999999999999999999 99999999886421
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+....++.......+.+.++++.++.. .++++.+|||||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 74 ARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35899999864333 479999988765443322222344567788888743 46677899999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++|+|+..||. .+.+.|.++.+ .+|++|||++.+.. |++ |+++..|+++++...
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999 44455555542 24799999998865 443 788788877666543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=265.82 Aligned_cols=195 Identities=19% Similarity=0.216 Sum_probs=154.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|+++. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
...++|++|++..++ .+|+.+|+.+....++.........+.++++.++.. .+..+..|||||+||++||++++.+
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 74 RLGIGYLPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred hccEEEecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 135899999964333 479999998765443322222334567788887743 4667789999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++++++|+|+..||.. +.+.+.++.. .+|++|||++.+.. |++ |+++..|+.+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999994 4444444432 24799999988776 444 787777876665
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=281.47 Aligned_cols=194 Identities=15% Similarity=0.135 Sum_probs=157.9
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC----CC--------
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KP-------- 148 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~----~~-------- 148 (313)
.++.+.|+... +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|. +.
T Consensus 28 ~~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l 100 (382)
T TIGR03415 28 EEILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATL 100 (382)
T ss_pred HHHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHH
Confidence 45667777666 9999999999999999999999999999999999999 99999999984 21
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...++ .+|+.+|+.++....+.+......++.++++.++. ..+.++.+|||||+||++||++
T Consensus 101 ~~~r~~~i~~vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 101 RRLRTHRVSMVFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred HHHhcCCEEEEECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 136999999964433 58999999988665554444445667888998884 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.++++|++|+|+..||.. +++.|.++.+ .+||+|||++++.+ |++ |++++.|+++++..
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999994 4444444433 25799999999876 554 89999999888753
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=276.84 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=155.6
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CCeEEEEec
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 157 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~~i~~v~q 157 (313)
|.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 4677666 9999999999999999999999999999999999999 9999999998653 235899999
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
+...++ .+|+.+|+.+....++.......+++.++++.++. ..++++.+||||||||++||+|++.++++|++|+|
T Consensus 74 ~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 74 YASVDE--DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 964333 58999999887665554333334567788888884 34678889999999999999999999999999999
Q ss_pred ccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 236 YLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 236 ~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+..||+ .+++.|.++.+ .+|++|||++++.. |++ |+++..|++.++...
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999 44455555433 24799999999876 544 889899998887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=273.45 Aligned_cols=202 Identities=16% Similarity=0.123 Sum_probs=160.7
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|+.... ...+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 5899999999974210 1238999999999999999999999999999999999999 9999999998652
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++. .|+.+|+.+....++.+......++.++++.++.. .++.+..||||||||++|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 235899999852 2232 59999999876655544333345677888888852 366778999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||.. +++.+.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999994 3444444432 25799999998865 555 89999999888754
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=265.86 Aligned_cols=195 Identities=20% Similarity=0.178 Sum_probs=154.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC----------CCccHHHHHHHHHHhhcC--CCccCCCCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqR 216 (313)
...++|++|+...++ .+|+.+|+.+.....+.. .......+.++++.++.. .++++.+|||||+||
T Consensus 74 ~~~i~~v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 74 RLGIGRTFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred hcCEEEEeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 134899999964333 479999998765433211 112234567788888743 456778999999999
Q ss_pred chhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++||++++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. +++ |+++..|++.++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999 34455554432 25799999998866 444 777777877665
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=266.58 Aligned_cols=199 Identities=17% Similarity=0.193 Sum_probs=157.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||++.|+++. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
...++|++|++..+. .+|+.+|+.+.....+ .........+.++++.++.. .+.++.+|||||+||++||++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 235899999964333 4799999877543221 11122334567788887742 356778999999999999999
Q ss_pred cccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.+++++++|+|+..||... ++.+.++.. .+|++|||++.+.. +++ |++++.|+++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999843 344444432 24799999987765 443 8888888877664
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=261.95 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=145.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+|||||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYP--HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhcc--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965332 47999999876544332222233456777888774 34667889999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999994 4455555432 25799999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=261.78 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=146.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCeEE
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVAT 153 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~i~ 153 (313)
|+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998753 34689
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
|++|+...++ .+|+.+|+.+....++.+.....+.+.++++.++.. .+.++.+|||||+||++||++++.++++++
T Consensus 74 ~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 74 YLPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EeccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999964333 479999998765544433233345677788888743 356777999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||.. +.+.+.++.+ .++++|||.+++..
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999983 4444544432 25799999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=263.27 Aligned_cols=185 Identities=14% Similarity=0.089 Sum_probs=147.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
||+++|+++.|++......+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 48899999999865111129999999999999999999999999999999999999 9999999998653 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|++..+. .+|+.+|+.+....++.........+.++++.++.. .++++.+|||||+||++||++++.++
T Consensus 78 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 78 RRLGFVSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred hhEEEecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 45899999964333 479999998765544433223345677888888743 46678899999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++|++|+|+..||. .+.+.|.++.+ .+|++|||++++..
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999 34445544432 25799999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=249.52 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=170.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++.|+++|+.|.||... +|++||++..+|+++.|||.+|||||||||||.=+.+ |+.|.|.++|...
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 45799999999999988 9999999999999999999999999999999999998 9999999998541
Q ss_pred ---------------CCeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021380 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 149 ---------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.+.+++||+ |+++. +||+.+|+... ....+.++....+++..+|.++|. ..+.++..||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~-FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQH-FNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhh-cchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 1237899999 45443 69999997764 344567777778888999999994 4456777999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||+||++||+|++..+.++++|+|+.-||+ +++..+.++..+ .++|||.+..+.. .++ |.+-+.|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 9999999999999999999999999999999 566666666655 4799999999877 555 8888899
Q ss_pred ChhHHHHH
Q 021380 277 KPPDVAKW 284 (313)
Q Consensus 277 ~~~e~~~~ 284 (313)
+|+++...
T Consensus 235 ~P~qvf~n 242 (256)
T COG4598 235 PPEQVFGN 242 (256)
T ss_pred ChHHHhcC
Confidence 99988653
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=271.17 Aligned_cols=197 Identities=17% Similarity=0.153 Sum_probs=158.0
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+|+++||++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 799999999996 444 9999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
...++|++|++..... .+|+.+|+.+.....+........++.++++.++. ..++++.+|||||+||++||++++.
T Consensus 77 ~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HHhhEEEEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 2358999998532222 36999999876544333322234556778888874 3566788999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.+ |++ |++++.|.++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999 44455555433 24799999999865 544 888888887654
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=264.96 Aligned_cols=200 Identities=14% Similarity=0.051 Sum_probs=158.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
|++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 56899999999998766 9999999999999999999999999999999999986 5 699999998642
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC--CCCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|++..++ .+|+.+|+.+.....+. ......+.+.++++.++.. .+..+.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred cCCHHHHhccEEEEeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 245899999964333 48999999876443221 1112234567788887742 356778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |++++.|++.+
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999994 4444444432 24799999998765 544 88888888877
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14247 232 VFT 234 (250)
T ss_pred HHc
Confidence 643
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=260.78 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=144.7
Q ss_pred EEEccceeEccc----cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 78 VEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 78 l~v~~ls~~y~~----~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
|+++||++.|++ +. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~ 73 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQ----ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSE 73 (218)
T ss_pred CeEeeeEEEecCCCccee----EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcch
Confidence 468999999976 44 9999999999999999999999999999999999999 9999999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchh
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .++.+.+||||||||++|
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 74 KELAAFRRRHIGFVFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred hHHHHHHhhcEEEEeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHH
Confidence 235899999965333 479999998865544332222334577888888743 356778999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
|++++.+++++++|+|+..||. .+.+.|.++.+ .+|++|||++++.
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 9999999999999999999999 44555555543 2479999998864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=284.98 Aligned_cols=206 Identities=18% Similarity=0.220 Sum_probs=173.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----CceeeeCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KASSFDSQVK---- 147 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~----~G~i~~~~~~---- 147 (313)
++|+|+||++.|........+++||||+|.+||++||+|.|||||||+++.|.|+++ +. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 489999999999765434459999999999999999999999999999999999998 55 8999999964
Q ss_pred --------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC--C--CccCCCCCccCC
Q 021380 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--G--SVYAPSFDHGVG 214 (313)
Q Consensus 148 --------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~--~~~~~~LSgGek 214 (313)
..+.++|+||+++..+++.+|+.+.+......++ ....+..+++.++|+.++.. . +.++++||||||
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 2357999999998888888899888887766554 33455667788999999832 2 347889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|||.||+|++.++++|+.|+|+--||. ++++.|+++.++ .||||||+.++.+ |++ |++++.|+++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 999999999999999999999999999 455555555533 4799999999988 665 9999999999
Q ss_pred HHHHH
Q 021380 280 DVAKW 284 (313)
Q Consensus 280 e~~~~ 284 (313)
+++..
T Consensus 241 ~i~~~ 245 (539)
T COG1123 241 EILSN 245 (539)
T ss_pred HHHhc
Confidence 99875
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=264.28 Aligned_cols=197 Identities=18% Similarity=0.171 Sum_probs=155.6
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++||++.|++ .. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468999999986 55 9999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHh--------cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCC
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekq 215 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||+|
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHhccEEEcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 135899999964333 47999998764321 111112234556778888874 346678899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
|++||++++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. +++ |+++..|++.+
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 99999999999999999999999999 44455555432 24799999999875 444 88888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (241)
T cd03256 232 LTD 234 (241)
T ss_pred hhH
Confidence 643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=269.88 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=160.3
Q ss_pred CCeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
|.+|+++||++.|+ +.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~~~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred CceEEEEEEEEEeCCCCc----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 56899999999995 444 8999999999999999999999999999999999999 99999999986432
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
..++|++|++..... ..|+.+|+.+.....+.......+.+.++++.++. ..++.+..|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 358999999532122 36999999876544333322233456778888774 34677889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||. .+++.+.++.. .+|++|||++++.. |++ |+++..|+++++..
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999998 44455555433 24799999999865 554 89999999888754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=265.21 Aligned_cols=196 Identities=15% Similarity=0.153 Sum_probs=156.5
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++||++.|++ .. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468999999987 55 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhhhcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~al~ 224 (313)
...++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++.. .+.++.+|||||+||++||++++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 RRKIGYVIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hcceEEEccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 235899999965433 479999998765443332222345677888888854 35677899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.+++++++|+|+..||.. +.+.|.++.+ .+|++|||.+.+.. +++ |+++..|++.++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999994 4444554432 24799999998765 444 8888888776653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=270.22 Aligned_cols=199 Identities=17% Similarity=0.134 Sum_probs=156.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 489999999998766 9999999999999999999999999999999999999 9999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|++..... ..++.+|+.+.....+.........+.++++.++. ..+.++.+|||||+||++||++++
T Consensus 74 ~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHHhheEEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 1358999998532222 24678888775444433222223456677887773 346678899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |++++.|.+.++..
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999994 4444444432 24799999998865 444 88888888877643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=262.03 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=151.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ .+|+.+|+.+....++ .......+.++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 74 RAGIGYVPEGRRIFP--ELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred hcCeEEeccccccCC--CCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 235899999964333 4799999987654432 1122334556666663 33567788999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++..|++.++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999994 4445544432 24799999998765 443 777777766554
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=265.85 Aligned_cols=196 Identities=18% Similarity=0.197 Sum_probs=154.8
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|+ +.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 488999999997 655 9999999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--------CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCC
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGek 214 (313)
.+.++|++|+...++ .+|+.+|+.+..... +.......+++.++++.++. ..+.++.+|||||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred HHHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 234899999964333 479999987642111 11112234567778888874 34667789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||++||++++.+++++++|+|+..||. .+.+.|.++.+ .+|++|||++.+.. +++ |+++..|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 999999999999999999999999998 34455555432 24799999998865 444 8888888877
Q ss_pred HH
Q 021380 280 DV 281 (313)
Q Consensus 280 e~ 281 (313)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 65
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=264.42 Aligned_cols=197 Identities=17% Similarity=0.196 Sum_probs=156.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++|+++.|++.. +|+|+||++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 488999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+... ..+.......+.+.++++.++. ..++++..||+||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHhhceEEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 235899999864333 4799999977532 2222222234456778888874 34667789999999999999999
Q ss_pred ccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||... .+.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999944 444444432 25799999999865 544 8888888877654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=264.53 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=156.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
+.+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 56899999999998766 9999999999999999999999999999999999997 7 499999988643
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC--CCCccHHHHHHHHHHhhc------CCCccCCCCCc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 211 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~------~~~~~~~~LSg 211 (313)
...++|++|++..++ .+|+.+|+.+.....+. +.......+.++++.++. ..+.++..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred ccccChHHHhhceeEEecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 135899999965333 47999999876543322 111223446677777763 24567779999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||+||++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |++++.|++
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999994 4444444432 25799999998765 444 888888887
Q ss_pred hHHH
Q 021380 279 PDVA 282 (313)
Q Consensus 279 ~e~~ 282 (313)
.++.
T Consensus 233 ~~~~ 236 (253)
T PRK14267 233 RKVF 236 (253)
T ss_pred HHHH
Confidence 7764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=258.53 Aligned_cols=181 Identities=15% Similarity=0.110 Sum_probs=145.1
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++|+++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 488999999994 555 9999999999999999999999999999999999999 9999999988542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHHHhheEEEecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 235899999964332 479999998765443322222345667888888743 356777999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999999994 4444444432 24799999988764
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=263.82 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=156.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~--- 148 (313)
+|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 488999999998766 9999999999999999999999999999999999998 88 99999988643
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
.+.++|++|+... + + +|+.+|+.+.....+. ......+.+.++++.++.. .+.++.+|||||+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~-~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNP-F-P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred ccchHHHHhheEEEecCccc-C-C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHH
Confidence 2358999998543 3 2 7999999876544332 1122234567788888753 3567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999984 4444444432 35799999998765 554 888888888776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 231 ~ 231 (247)
T TIGR00972 231 F 231 (247)
T ss_pred H
Confidence 4
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=270.04 Aligned_cols=203 Identities=16% Similarity=0.144 Sum_probs=160.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
++|+++||++.|++.. ...+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 3799999999997421 1128999999999999999999999999999999999999 99999999996532
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
+.++|++|++..... .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||++++.
T Consensus 79 ~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HHhhceEEEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 358999998532222 37999999887554444333334567788888884 3466788999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++++|++|+|+..||. .+++.+.++.+ .+|++|||++.+.. |++ |+++..|++.++..
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999 44445555443 24799999998854 544 88888898887654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=265.90 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=157.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 689999999998766 9999999999999999999999999999999999999 9999999988642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc--
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG-- 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~-- 224 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.........+.++++.++. ..++++.+|||||+||++||++++
T Consensus 75 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 75 ARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred hhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 235899999964333 47999998875432222112233456778888774 346788899999999999999999
Q ss_pred ----cCccEEEEcCcccccChh----hHHHHHHhh-c---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 ----LQHKVVIVDGNYLFLDGG----VWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ----~~a~~li~d~~~llLDE~----~~~~l~~l~-~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.+++++++|+|+..||.. +.+.|.++. + .+|++|||++++.. |++ |+++..|++.++..
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 589999999999999994 455555554 2 25799999998865 544 88888888777643
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=260.51 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=143.2
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEEEE
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVL 155 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~~v 155 (313)
+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|+
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEEe
Confidence 3689999998766 9999999999999999999999999999999999999 9999999998753 3469999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
+|++.......+|+.+|+.+...... .......+++.++++.++. ..++++.+||||||||++||++++.++++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99864322223799999877533211 1111233456778888774 34667889999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999994 4445544432 25799999998764
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=258.64 Aligned_cols=176 Identities=16% Similarity=0.089 Sum_probs=144.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998753 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+....++. +..++.++++.++. ..++++.+|||||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999964333 47999999876544332 34567778888874 34667789999999999999999999999
Q ss_pred EEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||... ++.+.++.. .+|++|||++++..
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 99999999999943 444444432 24799999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=259.67 Aligned_cols=179 Identities=15% Similarity=0.059 Sum_probs=144.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+|+||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 47899999998766 999999999999 999999999999999999999999 9999999998653 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+|||||+||++||++++.+++
T Consensus 73 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 73 RIGYLPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred heEEecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 47999999876554433322234456778888774 3466778999999999999999999999
Q ss_pred EEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||.... +.+.++.+ .+|++|||++++..
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 9999999999999444 44444332 24799999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=262.28 Aligned_cols=198 Identities=16% Similarity=0.154 Sum_probs=157.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 1 PILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred CeEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence 3689999999998766 9999999999999999999999999999999999999 99999999986431
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcC--------CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqR 216 (313)
..++|++|++..++ .+|+.+|+.+...... ........++.++++.++.. .+..+..|||||+||
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred HHhcCeeEeccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 24899999864333 4799999887543110 11112344567888888743 366778999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999994 4444444433 35799999999875 444 8888888877654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=258.65 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=145.7
Q ss_pred EEEccceeEccc----cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CC
Q 021380 78 VEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~----~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~ 150 (313)
|+++|+++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~~~~~----il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVT----ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGP 73 (220)
T ss_pred CeEEEEEEEcCCCCcceE----EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccC
Confidence 468999999986 45 9999999999999999999999999999999999999 9999999988643 35
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..+. .+|+.+|+.+....++.......+.+.++++.++.. .++.+..||||||||++||++++.+++
T Consensus 74 ~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 151 (220)
T cd03293 74 DRGYVFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151 (220)
T ss_pred cEEEEeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 6999999865332 479999998765544433222345677888888743 456778999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||. .+++.|.++.. .+|++|||++++..
T Consensus 152 lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9999999999999 44455554432 24799999997754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=269.05 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=161.6
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++|+++||++.|+ +.. +|+++||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence 4799999999996 455 9999999999999999999999999999999999999 9999999998653
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..... ..|+.+|+.+.....+.+......++.++++.++. ..++++..|||||+||++||++
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1358999998532222 36999999876554444433334567788888884 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.++++|++|+|+..||.. +++.|.++.+ .++++|||++++.. |++ |++++.|.++++..
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999994 4445555543 24699999999875 554 89999999888754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=261.10 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=154.0
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+...++ .+|+.+|+.+....++.. ..+...++++.++ ...+.++.+|||||+||++||++++.
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 74 RAGIAYVPQGREIFP--RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred HhCeEEeccCCcccC--CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 235899999965332 479999998765433211 1223455555554 34577888999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. +++ |++++.|+.+++...
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~~ 222 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcChH
Confidence 9999999999999999 34444544432 24799999998875 444 888888887776433
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=268.48 Aligned_cols=199 Identities=16% Similarity=0.210 Sum_probs=157.9
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence 488999999995 444 9999999999999999999999999999999999999 9999999998643
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|++...+. ..|+.+|+.+....++.......+.+.++++.++. ..+.++..|||||+||++||++++
T Consensus 74 ~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HHHhheEEEEEChhhhcc-cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 1348999998532122 36999999876544433322334456777888874 346678899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
.+++++++|+|+..||. .+++.+.++.+ .+|++|||++.+.. |++ |+++..|+++++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999998 44555555443 24799999999854 444 88888888877643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=269.95 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=159.6
Q ss_pred eEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++.. ....+|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 489999999996421 11239999999999999999999999999999999999999 9999999998542
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 235899999852 2232 59999998865544433333345677888888853 346778999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.+++++++|+|+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999 44455555432 24799999998765 555 89899998887654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=262.75 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=154.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++|+++.|+++. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 689999999998766 9999999999999999999999999999999999999 9999999988642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++..++ .+|+.+|+.+. ....+.........+.++++.++.. .++.+..|||||+||++|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hhHHHHHhheEEEecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 235899999865333 47999998753 2223322222234567778887743 466778999999999999
Q ss_pred hhhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
|++++.+++++++|+|+..||.... +.+.++.+ .+|++|||.+++.. |++ |+++..|++.++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999444 44444332 24799999998865 444 788888876654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=263.06 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=146.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVAT 153 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~ 153 (313)
||+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...++
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 489999999998766 9999999999999999999999999999999999999 9999999988653 23589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
|++|+...++ .+|+.+|+.+.....+........++.++++.++.. .++++..|||||+||++||++++.++++|+
T Consensus 74 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 74 VVFQNEGLLP--WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEeCCCccCC--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999964332 479999998765444333222345677888888743 356778999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+|+|+..||.. +++.|.++.. .+|++|||++++..
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999994 4445554422 24799999998865
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=270.71 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=159.0
Q ss_pred CCeEEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
.++|+++||++.|++.. ....+|+||||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccccc
Confidence 46899999999997421 11239999999999999999999999999999999999999 9999999987431
Q ss_pred -------------------CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCcc
Q 021380 149 -------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVY 205 (313)
Q Consensus 149 -------------------~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~ 205 (313)
.+.++|++|++. .++. .|+.+|+.+.....+.+......++.++++.++.. .+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 235899999862 2332 59999998765443333223344667788888753 4667
Q ss_pred CCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hh
Q 021380 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KR 271 (313)
Q Consensus 206 ~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr 271 (313)
+.+|||||+||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999994 3444444332 25799999998765 554 89
Q ss_pred hhccCChhHHH
Q 021380 272 HISTGKPPDVA 282 (313)
Q Consensus 272 ~v~~G~~~e~~ 282 (313)
+++.|++.++.
T Consensus 254 i~~~g~~~~~~ 264 (320)
T PRK13631 254 ILKTGTPYEIF 264 (320)
T ss_pred EEEeCCHHHHh
Confidence 99999888764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=256.74 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=142.0
Q ss_pred EEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCeE
Q 021380 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVA 152 (313)
Q Consensus 79 ~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~i 152 (313)
+++||++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36899999986 55 9999999999999999999999999999999999999 9999999998653 2469
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|++..... .+|+.+|+.+.....+ ....++.++++.++. ..++++.+||||||||++||++++.+++++
T Consensus 74 ~~~~q~~~~~~~-~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 74 GYVMQDVDYQLF-TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred EEEecChhhhhh-hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999532222 3699999987543322 123567788888884 346677899999999999999999999999
Q ss_pred EEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||.. +++.|.++.+. +|++|||++++..
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999994 44444444222 4799999998754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=256.91 Aligned_cols=185 Identities=14% Similarity=0.069 Sum_probs=144.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 47899999999752111229999999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.............+.+.++++.++.. .++++..|||||+||++||++
T Consensus 78 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 135899999964333 479999998754433222222344567788888743 456778999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 99999999999999999983 4455554432 25799999998743
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=263.93 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=156.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
+++|+++|+++.|+++. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 56899999999998766 9999999999999999999999999999999999987 5 799999988542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|+... +. +|+.+|+.+.....+.........+.++++.++.. .+.++..|||||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cccchHHHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 2358999998543 32 69999998765444332222233466777777642 356777999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||... ++.|.++.+ .+|++|||++++.. |++ |++++.|.+.+
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999943 444444432 25799999998865 544 88888888877
Q ss_pred HH
Q 021380 281 VA 282 (313)
Q Consensus 281 ~~ 282 (313)
+.
T Consensus 240 ~~ 241 (258)
T PRK14268 240 IF 241 (258)
T ss_pred Hh
Confidence 64
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=264.79 Aligned_cols=203 Identities=15% Similarity=0.123 Sum_probs=158.5
Q ss_pred eEEEccceeEccccc-----cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~-----~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--- 148 (313)
||+++||++.|++.. ....+|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 689999999996310 01239999999999999999999999999999999999999 9999999998542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCc
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqR 216 (313)
.+.++|++|++.....+.+|+.+|+.+..... +........++.++++.++.. .+.++..|||||+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 23599999996322223579999987654332 222223345677888888753 366788999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. +++ |+++..|+++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999994 5555555542 24799999998865 444 888888888776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 239 ~ 239 (265)
T TIGR02769 239 L 239 (265)
T ss_pred c
Confidence 4
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=262.20 Aligned_cols=199 Identities=13% Similarity=0.101 Sum_probs=156.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 45799999999998766 9999999999999999999999999999999999998 6 489999988542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
.+.++|++|+... +. +|+.+|+.+.....+... ....+.+.++++.++. ..+.++.+||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred cccccHHHHhhceEEEeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 2358999999643 32 799999987654333211 1123455666776653 246678899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|++.
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999994 4444444432 25799999998765 544 8888888887
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 235 ~~~~ 238 (254)
T PRK14273 235 ELFF 238 (254)
T ss_pred HHHh
Confidence 7643
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=267.04 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=156.8
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----------
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------- 148 (313)
.++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 5679999999887 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++.. .++.+.+|||||+||++||++++
T Consensus 99 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 99 LRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hhcCcEEEEecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 235899999964333 479999998765443332222334567788888743 46778899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|++.++..
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999994 4444444432 24799999998765 444 78888888777643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=262.19 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=157.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----C--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~-- 148 (313)
++|+++||++.|+++. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 4799999999998766 9999999999999999999999999999999999999 999999999875 2
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
...++|++|+........+++.+|+.+.....+.. .......+.++++.++.. .++.+.+|||||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 12489999996422333468888886643322211 112234567788888753 3567889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||++||++++.+++++++|+|+..||... ++.|.++.+ .+|++|||++.+.. +++ |++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999944 444444333 24799999999875 444 8888888887
Q ss_pred HHH
Q 021380 280 DVA 282 (313)
Q Consensus 280 e~~ 282 (313)
++.
T Consensus 238 ~~~ 240 (258)
T PRK11701 238 QVL 240 (258)
T ss_pred HHh
Confidence 764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=267.32 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=159.9
Q ss_pred CeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++|+++||++.|++ +. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDAATY----ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCCCcc----ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcH
Confidence 47999999999974 34 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+....+. ..|+.+|+.+.....+.+.....+++.++++.++. ..+.++..|||||+||++||+++
T Consensus 77 ~~~~~~i~~~~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFV-GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred HHHhhheEEEEeCHHHhcc-cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2358999999521222 36999999876554443333334557778888774 34667789999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||. .+++.|.++.+ .++++|||++++.. |++ |++++.|++.++..
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999 44555555543 24799999998865 444 88888898877653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=263.29 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=158.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.+|+++||++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 3589999999998776 9999999999999999999999999999999999999 9999999998532
Q ss_pred --------------CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021380 149 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 149 --------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
.+.++|++|++..++ .+|+.+|+.+... ..+........++.++++.++.. .++++.+||
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 235899999964333 4799999976432 22222222345677888888853 256778999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||+||++||++++.+++++++|+|+..||....+ .|.++.+ .+|++|||++++.. |++ |++++.|
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999994443 4444432 24799999998875 554 8888888
Q ss_pred ChhHHHH
Q 021380 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~e~~~ 283 (313)
+++++..
T Consensus 235 ~~~~~~~ 241 (257)
T PRK10619 235 APEQLFG 241 (257)
T ss_pred CHHHhhh
Confidence 8777643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=257.42 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=145.5
Q ss_pred eEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++|+++.| +++. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 48899999999 5555 9999999999999999999999999999999999999 9999999988542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.........+.++++.++. ..++.+.+|||||+||++||++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred HHHHHhheEEEecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 235899999964333 47999999876544433222223456678888774 3466778999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+++++++|+|+..||.. +++.+.++.+ .+|++|||++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999994 4444554432 24799999998875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=260.76 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=155.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~---- 148 (313)
-++|+++||+++|++.. +|+++||+|++|+++||+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 36899999999998766 999999999999999999999999999999999986300 04799999998542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.....+... ....+++.++++.++.. .+..+..|||||+|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 2359999999643 32 499999987654433211 12244566777777642 35667899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 4444444432 25799999998865 544 8888888877664
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=257.97 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=143.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999764100129999999999999999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc-cHHH-HHHHHHHhhcC---CCccCCCCCccCCCcchhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~-~~~~l~~l~~~---~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|++.....+.+|+.+|+.+.....+..... .... +.++++.++.. .+.++..|||||+||++||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 23589999996322233589999998765433221111 1122 24677777742 3667789999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+..
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999994 4444444432 24799999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=260.84 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=154.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|++|+++||++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 56899999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...++ .+|+.+|+.+...... .......+.++++.++ ...+.++.+|||||+||++||++
T Consensus 76 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFS--RMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred HHHHhCEEEeccCcccCC--CCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHH
Confidence 235899999965333 4799999877532211 1112234455556552 23456777999999999999999
Q ss_pred cccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.+++++++|+|+..||... ++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999943 444444433 24799999998776 544 8888889887774
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=255.99 Aligned_cols=185 Identities=16% Similarity=0.054 Sum_probs=145.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|++......+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence 579999999999752111128999999999999999999999999999999999999 9999999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...+. .+|+.+|+.+.....+.......+++.++++.++.. .++.+..|||||+||++||+
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhheEEEEEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 135899999964333 479999988764433322223345677888888743 35677899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
+++.+++++++|+|+..||.. +++.|.++.. .+|++|||++.+.
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 999999999999999999984 4444444422 2479999999764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.59 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=142.8
Q ss_pred EEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 79 ~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+++|+++.|++ +. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36899999986 55 9999999999999999999999999999999999999 9999999988542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...... .+|+.+|+.+.....+.........+.++++.++.. .++++..|||||+||++||++++.+
T Consensus 74 ~~~i~~~~q~~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 74 RRKVGLVFQNPDDQFF-GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred HhhceEEecChhhhcC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2358999998532122 379999987764433322222234567788888743 4667889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++++++|+|+..||.. +++.|.++.+ .+|++|||++++..
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999994 4445544443 25799999998764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=260.34 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=155.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++.. +. .|+.+|+.+.....+ ....++.++++.++.. .++++.+|||||+||++||+++
T Consensus 74 ~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 74 DLRRKIGMVFQQPHL-FE--GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred HhhhcEEEEecCchh-ch--hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 2458999999643 32 589998876433221 1234567788888753 3567789999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999994 3344444432 24799999998765 444 8888888877764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=260.66 Aligned_cols=198 Identities=10% Similarity=0.102 Sum_probs=155.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~--- 148 (313)
+|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecccc
Confidence 699999999998766 9999999999999999999999999999999999986 5 699999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGek 214 (313)
.+.++|++|+...++ .+|+.+|+.+.....+. ......+.+.++++.++. ..+..+.+|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred ccChHHHhcceEEEccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 135899999864333 47999999876544332 112223455677777764 23567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----------hhhhcc
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHIST 275 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----------gr~v~~ 275 (313)
||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999994 4444444432 25799999998865 442 677788
Q ss_pred CChhHHHH
Q 021380 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~e~~~ 283 (313)
|++.++..
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 88777643
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=264.12 Aligned_cols=205 Identities=16% Similarity=0.149 Sum_probs=156.8
Q ss_pred CeEEEccceeEccccc-----cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~-----~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-- 148 (313)
+||+++||++.|++.. ....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 4799999999996321 01239999999999999999999999999999999999999 9999999998542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcch
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|++.....+.+|+.+++.+..... ........+.+.++++.++.. .+..+.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 13589999986322233468888887654432 222222234567888888752 35567799999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
||++++.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 999999999999999999999994 4444555432 25799999999875 444 78888888776643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=259.20 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=157.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
.++|+++|+++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred ccEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence 35899999999998766 9999999999999999999999999999999999986 5 799999988653
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
.+.++|++|++.. +. +|+.+|+.+.....+... .....++.++++.++. ..+.++..||+|
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred cccccHHHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 2358999999643 32 799999987654443211 1223445667777763 235677899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|+||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |++++.|++.
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999994 3444444432 25799999998765 544 8888889888
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 232 ~~~~ 235 (251)
T PRK14270 232 KIFL 235 (251)
T ss_pred HHhc
Confidence 7643
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=265.98 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=160.3
Q ss_pred CeEEEccceeEccccc--cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~--~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
+||+++|+++.|++.. ....+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 5799999999997421 01239999999999999999999999999999999999999 9999999998542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..... ..++.+|+.+.....+.+.....+.+.++++.++. ..++++.+|||||+||++||++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 2358999998532222 25888998876554443333334567788888874 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 44555555432 24799999999865 544 88888898888754
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=261.67 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=156.4
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~ 148 (313)
.+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 16 ~~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDI 88 (267)
T ss_pred CCceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEC
Confidence 345899999999998766 9999999999999999999999999999999999996 5 899999998542
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFD 210 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LS 210 (313)
.+.++|++|++.. +. .|+.+|+.+....++.. .....+++.++++.++.. .+.++.+||
T Consensus 89 ~~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 165 (267)
T PRK14235 89 YDPRLDVVELRARVGMVFQKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLS 165 (267)
T ss_pred cccccchHHHhhceEEEecCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence 2358999998643 32 48999998765433321 112234567778877752 345678999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|||+||++||++++.++++|++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |+++..|.
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999994 3444444432 25799999998865 444 88888888
Q ss_pred hhHHH
Q 021380 278 PPDVA 282 (313)
Q Consensus 278 ~~e~~ 282 (313)
+.++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 77664
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=262.61 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=150.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i 152 (313)
++|+++||++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.+
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence 5699999999998766 9999999999999999999999999999999999999 9999999988542 3468
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|++..++ .+|+.+|+.+... . ....++.++++.++.. .++++.+||||||||++||++++.+++++
T Consensus 84 ~~v~q~~~l~~--~~tv~enl~~~~~-----~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 84 RLMFQDARLLP--WKKVIDNVGLGLK-----G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EEEecCccCCC--CCcHHHHHHhccc-----c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965333 4799999876421 1 1234567788888743 46677899999999999999999999999
Q ss_pred EEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 231 IVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 231 i~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
++|+|+..||... .+.|.++.. .+|++|||++++.. +++ |+++..|.
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 9999999999944 344444422 24799999998765 444 67766554
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=265.06 Aligned_cols=198 Identities=17% Similarity=0.159 Sum_probs=157.6
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.|++ .. +|+|+||+|.+||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 1 ILETRDLKYSYPDGTE----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred CEEEEEEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchH
Confidence 4889999999963 44 8999999999999999999999999999999999999 9999999998543
Q ss_pred ---CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++. .++ ..|+.+|+.+.....+.......+.+.++++.++. ..++++.+|||||+||++||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLF--APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHHhheEEEeeChhhhhc--cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 235899999952 223 26999999876443332222233456778888874 3567788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||.. +++.+.++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999994 4445554432 24799999998875 544 88888898887653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=261.47 Aligned_cols=197 Identities=17% Similarity=0.187 Sum_probs=155.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++|++++|+++. +|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHH----hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...+ +.+|+.+|+.+... .++.........+.++++.++. ..+.++.+|||||+||++||++
T Consensus 75 ~~~i~~~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 75 ARRLALLPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred hhheEEecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 23589999996433 24799999876421 1121112234456777887774 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.+++++++|+|+..||.... +.|.++.. .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999444 44444332 24799999998876 444 7888888777664
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=271.79 Aligned_cols=190 Identities=15% Similarity=0.107 Sum_probs=154.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||++ ||+|.|++.. + |+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~-~l~k~~~~~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4788 9999998743 3 8999999999999999999999999999999999 9999999988531
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|+...++ .+|+.+|+.+... ....+++.++++.++.. .++++.+||||||||++||++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFP--HYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred cchhhCCEEEEcCCcccCC--CCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 245999999964333 5899999987532 12345677888888843 467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++.+++++++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |+++..|++.++...
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 99999999999999999994 4444544433 25799999998876 544 888889998887643
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=264.61 Aligned_cols=202 Identities=13% Similarity=0.064 Sum_probs=156.1
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 4889999999975210 1128999999999999999999999999999999999999 9999999988542
Q ss_pred -----CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 -----~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++. .++. .|+.+|+.+....++.........+.++++.++.. .++++.+||||||||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 135899999852 2232 59999998765443332222234566778887753 366788999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++++.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|++.++..
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999994 3444444432 24799999998865 444 88888888877654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=260.25 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=156.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
+++|+++|+++.|+++. +|+++||+|++|++++|+|+||||||||+++|+|+++ ..++++|+|.++|.+.
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 46899999999998766 9999999999999999999999999999999999986 1111699999988642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+...+ . .|+.+|+.+....++... .....++.++++.++.. .+..+.+|||||+|
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 23589999996433 2 489999987654433211 11233456677776632 35677799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++.+.. |++ |+++..|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999443 44444332 24799999998765 444 8888899888764
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 3
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=290.26 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=162.8
Q ss_pred CCeEEEccceeEccccc-------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.++|+++||++.|+... ....+|+||||+|.+|+++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence 46899999999996210 01238999999999999999999999999999999999999 999999998853
Q ss_pred C-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 148 ~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
. .+.++|++|+++....+.+|+.+++.+.....+.. .....+++.++|+.++.. .++++.+||||
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHH
Confidence 2 23599999996422334589999998765443321 122335677889998853 46788899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|||||+||++++.++++|++|+|+..||.. +++.|.++.+. +||||||++++.. |++ |++++.|+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999994 44445444332 5799999999876 554 89999998
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
+.++..
T Consensus 548 ~~~i~~ 553 (623)
T PRK10261 548 RRAVFE 553 (623)
T ss_pred HHHHhc
Confidence 888753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=259.17 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=156.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
..+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ...|++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 45799999999998765 9999999999999999999999999999999999984 0014799999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+....+ +.......+++.++++.++.. .+.++.+|||||+|
T Consensus 87 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cchHHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 2359999999643 32 69999998765433 222222234567778877642 35677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 3444444432 24799999998765 544 8888888877764
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 3
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=260.22 Aligned_cols=196 Identities=16% Similarity=0.153 Sum_probs=154.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988532
Q ss_pred ------------CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccC
Q 021380 149 ------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 149 ------------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGe 213 (313)
.+.++|++|+...++ .+|+.+|+.+... ..+.........+.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 235899999864333 4799999987532 2222222223456778888774 3356777999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
+||++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |++++.|+.
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999983 4445555433 25799999998865 444 888888887
Q ss_pred hHHH
Q 021380 279 PDVA 282 (313)
Q Consensus 279 ~e~~ 282 (313)
.++.
T Consensus 232 ~~~~ 235 (252)
T TIGR03005 232 DEIF 235 (252)
T ss_pred HHHh
Confidence 6664
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=257.04 Aligned_cols=199 Identities=12% Similarity=0.134 Sum_probs=155.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
|++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 45899999999998766 9999999999999999999999999999999999986 5 899999998542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgG 212 (313)
.+.++|++|++.. + + .|+.+|+.+.....+... ....+.+.++++.++.. .+..+.+||||
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~-~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTP-F-P-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhHHHhhhhEEEEecCCcc-C-c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 2459999998643 3 2 699999987654333221 12233456667776642 35677899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|+||++||++++.+++++++|+|+..||... ++.|.++.. .+|++|||++.+.. |++ |+++..|+++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999944 344444332 25799999998765 544 8888888887
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14262 231 EIVE 234 (250)
T ss_pred HHHh
Confidence 7643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=252.06 Aligned_cols=180 Identities=16% Similarity=0.175 Sum_probs=144.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999998643
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...++ .+|+.+|+.+... .++.......+.+.++++.++.. .++++.+|||||+||++||++++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 74 LRQKVGMVFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHhcceEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 235899999965333 4799999887543 22222222334567788887743 46778899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999984 4445554433 25799999998754
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=258.76 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=155.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 3799999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHh----------cCCC---C--CccHHHHHHHHHHhhc--CCCccCCCC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----------RGAP---W--TFNPLLLLNCLKNLRN--QGSVYAPSF 209 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----------~~~~---~--~~~~~~~~~~l~~l~~--~~~~~~~~L 209 (313)
...++|++|++..++ .+|+.+|+.+.... ++.+ . ......+.++++.++. ..++++.+|
T Consensus 77 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 77 IARMGVVRTFQHVRLFR--EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHhcCeEEeccCcccCC--CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 123788999865333 47999999875321 1100 0 0122346677777774 346788899
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
||||+||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++.
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999984 4444444432 24799999999866 444 88888
Q ss_pred cCChhHHH
Q 021380 275 TGKPPDVA 282 (313)
Q Consensus 275 ~G~~~e~~ 282 (313)
.|+++++.
T Consensus 235 ~~~~~~~~ 242 (255)
T PRK11300 235 NGTPEEIR 242 (255)
T ss_pred cCCHHHHh
Confidence 88876653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=261.95 Aligned_cols=198 Identities=16% Similarity=0.108 Sum_probs=156.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 10 TTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred ceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cC---CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...++ .+|+.+|+.+.... .+ .......+.+.++++.++. ..++++.+|||||+||++||+
T Consensus 83 ~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 83 FARKVAYLPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HhhheEEeccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 235899999854333 47999998764211 11 1111233456778888774 346778899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999994 4455555432 24799999998865 444 8888888877654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=257.08 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=155.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+++++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 588999999998766 99999999999999999999999999999999999741016899999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC--CCccHHHHHHHHHHhhcC------CCccCCCCCccCCCcchhh
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.. ......++.++++.++.. .+.++..|||||+||++||
T Consensus 78 ~~~i~~~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 78 RKNVGMVFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hhhEEEEecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 2358999999643 32 59999998764433321 122334566788887752 3556779999999999999
Q ss_pred hhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++++.+++++++|+|+..||... .+.|.++.. .+|++|||++++.. |++ |++++.|.+.++.
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999943 344443322 24799999998765 444 8888888877764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=289.23 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=162.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------- 147 (313)
++||+++||++.|++......+|+||||+|.+|+++||+|+||||||||+|+|+|+++ |++|+|.++|..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 5689999999999632111239999999999999999999999999999999999999 999999887631
Q ss_pred ---------------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhcC-----CCccC
Q 021380 148 ---------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYA 206 (313)
Q Consensus 148 ---------------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~ 206 (313)
..+.++|++|++.....+.+|+.+|+.+..... +.......+++.++|+.++.. .+.++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 113589999985311223589999999876542 333333345678889998853 36788
Q ss_pred CCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hh
Q 021380 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 271 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr 271 (313)
.+|||||||||+||+|++.++++|++|+|+..||. .+++.++++.+ .+|+||||++++.. |++ |+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 89999999999999999999999999999999999 45555555542 24799999999876 554 88
Q ss_pred hhccCChhHHH
Q 021380 272 HISTGKPPDVA 282 (313)
Q Consensus 272 ~v~~G~~~e~~ 282 (313)
+++.|++.++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 88888887764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=256.97 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=154.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCC---CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p---~~G~i~~~~~~~-- 148 (313)
++|+++||++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+. . | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 4799999999998766 999999999999999999999999999999999984 3 5 599999998542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|+... +. +|+.+|+.+.....+... ......+.++++.++. ..+..+.+||+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cccchHhhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 2359999999643 32 699999987654433221 1123445666777653 2356778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |++++.|.+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999444 44444332 25799999998765 554 88888888877
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14239 234 MFM 236 (252)
T ss_pred HHh
Confidence 643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=251.74 Aligned_cols=180 Identities=16% Similarity=0.074 Sum_probs=143.9
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++|+++.|++ +. +|+|+||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPNGTA----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 468999999964 45 9999999999999999999999999999999999999 9999999988642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|++..++ .+|+.+|+.+....++.......+++.++++.++. ..+.++.+|||||+||++||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHheEEEecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 135899999964333 47999999887554433222233456778888774 34567789999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+..
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999999983 4444444432 25799999988764
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=261.76 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=156.7
Q ss_pred CeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
++|+++|+++.|+ ++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCH
Confidence 4799999999995 344 9999999999999999999999999999999999999 9999999998652
Q ss_pred ---CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++. .++ .+|+.+|+.+.....+.........+.++++.++. ..+..+..|||||+||++||++
T Consensus 79 ~~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASV 156 (271)
T ss_pred HHHhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 235899999952 222 37999999876543332222223456778888874 3567788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+++.|.++.+ .+|++|||++.+.. +++ |+++..|++.++..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999 44455555432 24699999998754 433 78777787766543
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=247.39 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=160.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||+|.|+++. +|+++|++|++|.+++|||||||||||||.+++.+++ .++|+|.++|.+..
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHh--cCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcc
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.+.++-|.... +..+||++-+.|+..- .|.+.++++..+.+.++.+. ...+++..+||||||||..+|..++
T Consensus 74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 346777787543 3358999999887643 35566778888999999988 4567889999999999999965555
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
.+.+.+++|+|+.-||- .+++.++.+.+ .+++|-||.+++.. .++ |+++..|++++++...
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 55555566666655554 44455554443 35799999999987 555 9999999999987653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=245.46 Aligned_cols=199 Identities=17% Similarity=0.180 Sum_probs=164.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||++...++. +|+++||++.+||+++|+||||||||||||.|+|.+. |++|++.++|.+..
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 589999999999988 9999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC--ccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcc
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.-++++|+...-++ +||.|-+.++..-++.... .+...+...|...+ ....+.+.+|||||||||.+|+.++
T Consensus 74 A~~raVlpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 74 ARHRAVLPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHHhhhcccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHH
Confidence 345789998654443 7999999887665543333 44445677888777 4567788999999999999999976
Q ss_pred c------CccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ~------~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
. ..|.|++|+|+.-||- .+++..+++..+ ++.|-||++.+.. |++ ||+++.|.|.+++..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 4 3468899999999997 677777777765 4689999999887 666 999999999998644
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=257.25 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=155.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----C--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~-- 148 (313)
++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 4799999999998766 8999999999999999999999999999999999999 999999998754 1
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
.+.++|++|++.......+++.+|+.+....... ........+.++++.++.. .+..+..|||||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1348999999643233345777787654322111 1112235667888888753 3567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||++||++++.++++|++|+|+..||.. +++.+.++.+ .+|++|||++++.. +++ |+++..|++.
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999994 4444444432 24799999998875 444 8888888876
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 6643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=260.04 Aligned_cols=201 Identities=17% Similarity=0.108 Sum_probs=158.2
Q ss_pred CCeEEEccceeEccc---------cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 75 IPVVEARCMDEVYDA---------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~---------~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
|++|+++||++.|++ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g 73 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQT----VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRG 73 (268)
T ss_pred CceEEEeceEEEecCCccccccCcee----eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC
Confidence 568999999999973 44 9999999999999999999999999999999999999 9999999998
Q ss_pred CCC-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021380 146 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 146 ~~~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
.+. .+.++|++|+....+.+..++.+++.+.... .+.........+.++++.++.. .+.++..||
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 153 (268)
T PRK10419 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS 153 (268)
T ss_pred EeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence 642 2359999999632222347888887654332 1222222334577888888753 366788999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhcc
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~ 275 (313)
+||+||++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. +++ |++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999999999984 4555555543 24799999998875 444 888888
Q ss_pred CChhHHH
Q 021380 276 GKPPDVA 282 (313)
Q Consensus 276 G~~~e~~ 282 (313)
|++.++.
T Consensus 234 g~~~~~~ 240 (268)
T PRK10419 234 QPVGDKL 240 (268)
T ss_pred CChhhcc
Confidence 8877754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=284.33 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=157.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p--~~G~i~~~~~~~---- 148 (313)
++||+++||++.|++.. +|+||||+|.+|+++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 3 EYLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred CceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence 35799999999998766 9999999999999999999999999999999999997 7 799999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--C-CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcch
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|+...++ .+|+.+|+.+....+ + .......+++.++++.++. ..++++.+||||||||++
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred HHHHHHCCeEEEEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 245899999964333 489999998764322 1 1111223457788888884 346778899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++++.++++|++|||+..||+. +++.|.++.+ .+|++|||++.+.. |++ |+++..|++.++
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999994 4444444432 25799999998876 554 888888877665
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=254.84 Aligned_cols=196 Identities=16% Similarity=0.130 Sum_probs=153.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
||+++||++.|++.. .++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 ~l~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHLP------MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCcc------ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 488999999997532 38999999999999999999999999999999999 9999999998652 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..++ .+|+.+|+.+..............++.++++.++. ..++++..|||||+||++||++++.+++
T Consensus 72 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFS--HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEeccccccc--CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999964333 47999998764321101112234567788888874 3567788999999999999999999999
Q ss_pred EEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 229 VVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999994 4455555532 25799999998765 544 88888888766643
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=249.98 Aligned_cols=176 Identities=11% Similarity=0.007 Sum_probs=142.2
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----------
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------- 148 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----------- 148 (313)
++||++.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 478999998766 9999999999999999999999999999999999999 9999999998651
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+||+||+||++||++++.
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 74 RREKLGYLFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHhCeeEEecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 235899999964333 47999999886544333322334567788888874 3467788999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
+++++++|+|+..||.. +++.|.++.+ .+|++|||++..
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999994 4444444432 247999999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=257.57 Aligned_cols=202 Identities=11% Similarity=0.109 Sum_probs=154.2
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~--- 148 (313)
..++|+++|+++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 18 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred CCceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 345899999999998766 99999999999999999999999999999999998620 015899999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.+.++.++.. .++++.+|||||+
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred cccHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 2358999999643 32 489999887643332211 11223455666666532 3567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |++++.|++.++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999994 4444444432 25799999998765 554 888888887766
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 251 ~ 251 (268)
T PRK14248 251 F 251 (268)
T ss_pred H
Confidence 4
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=259.35 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=155.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~---- 148 (313)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 4799999999998776 9999999999999999999999999999999999998 76 49999998542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--------CCCCCccHHHHHHHHHHhhcC--CCccCCCC
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~l~~~--~~~~~~~L 209 (313)
...++|++|+...++ .+|+.+|+.+..... +........++.++++.++.. .++.+..|
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccchhHHHHHhheEEEcccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 124899999964333 479999997653210 111122334677888888743 46778899
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
|+||+||++||++++.++++|++|+|+..||. .+.+.|.++.+ .+|++|||++++.. |++ |+++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999 34455555542 25799999998765 544 78888
Q ss_pred cCChhHH
Q 021380 275 TGKPPDV 281 (313)
Q Consensus 275 ~G~~~e~ 281 (313)
.|++.++
T Consensus 234 ~g~~~~~ 240 (262)
T PRK09984 234 DGSSQQF 240 (262)
T ss_pred eCCHHHh
Confidence 8887764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=255.43 Aligned_cols=202 Identities=10% Similarity=0.079 Sum_probs=155.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~----- 148 (313)
..|+++|+++.|++.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ ...|++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 3689999999998766 9999999999999999999999999999999999984 0012689999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqR 216 (313)
.+.++|++|+...+. .+|+.+|+.+.....+.. .....+.+.++++.++.. .+..+.+|||||+||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 235899999965333 479999998754433321 112234466777777642 245677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999994 3344444432 35799999998865 544 88888888777643
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=255.39 Aligned_cols=201 Identities=11% Similarity=0.111 Sum_probs=154.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~---- 148 (313)
|.+|+++||++.|+++. +|+|+||+|++||+++|+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34689999999998766 99999999999999999999999999999999998750 001699999998542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
...++|++|++.. + + +|+.+|+.+....++... ....+.+.++++.++. ..+.++.+|||||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~-~-~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNP-F-P-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred cchHHHhccEEEEecCCcc-C-c-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 2358999998543 3 2 699999987654443221 1223455666776653 235677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |+++..|.+.++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 3444444432 25799999998766 544 8888888877664
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=249.09 Aligned_cols=178 Identities=17% Similarity=0.082 Sum_probs=145.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
||+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 488999999998766 9999999999999999999999999999999999999 9999999998642 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...+ +.+|+.+|+.+....++. ...+.+.++++.++. ..++++..|||||+||++||++++.++
T Consensus 74 ~~~~~~~~~~~~~--~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 74 QDLLYLGHQPGIK--TELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred hheEEeCCccccC--cCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 3588999885432 247999999876544321 234567788888874 346678899999999999999999999
Q ss_pred cEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||... ++.|.++.+ .+|++|||.+++..
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9999999999999944 444444322 25799999998755
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=255.84 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=155.4
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH---hcccCC--CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl---l~~~~p--~~G~i~~~~~~~-- 148 (313)
++|+++|+++.|+++. +|+|+||+|++|+++||+||||||||||+++|+|+ ++ | ++|+|.++|.+.
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 5799999999998766 99999999999999999999999999999999997 34 4 589999998643
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.++++.++.. .+..+..|||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccccHHHHhhheEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 1348999999643 32 599999987654433221 12234566777777642 355677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||... .+.|.++.. .+|++|||++.+.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999943 444444332 25799999998865 554 88889998887
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=262.80 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=158.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ceeeeCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---G~i~~~~~~~---- 148 (313)
.+|+++|+++.|++.. ..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++ |+|.++|.+.
T Consensus 4 ~~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred ceEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence 3799999999996421 128999999999999999999999999999999999998 887 8999998653
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
...++|++|++...+. ..|+.+|+.+.....+.......+++.++++.++.. .++++..|||||+||++||++
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFV-GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 2358999999532222 379999998765444333222334577788888743 467788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+.+.|.++.. .+|++|||++++.. |++ |++++.|+++++..
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999 44455555432 24799999998854 444 89899998887654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=263.40 Aligned_cols=202 Identities=12% Similarity=0.049 Sum_probs=155.3
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|+++.. ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence 5899999999975310 1238999999999999999999999999999999999999 9999999988532
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|++..... ..|+.+|+.+.....+.........+.++++.++. ..++++.+|||||+||++|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 2358999998532122 25899999876543332222223455677777774 2466778999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999993 4444444432 25799999998765 444 8888888877764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=259.89 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=157.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.+|+++||+++|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhc-C---CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
...++|++|+...++ .+|+.+|+.+..... + .........+.++++.++. ..++++..|||||+||++||+
T Consensus 79 ~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 79 VARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred HhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHH
Confidence 235899999965433 378999887542111 1 0111223456778888774 346788899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999994 4455555433 25799999998776 544 88888888877653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=283.55 Aligned_cols=197 Identities=17% Similarity=0.164 Sum_probs=156.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
+||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC----CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.++...+. .......+++.++++.++.. .++++.+||||||||++||
T Consensus 76 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 76 SQEAGIGIIHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHhCCEEEEEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 235899999864333 4899999987543221 11111234567888888843 4667889999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|.+.++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999994 4444444433 25799999998876 554 888877776654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=255.53 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=153.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
|++|+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 45799999999998766 9999999999999999999999999999999999997 6 489999988542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ....+.+.++++.++. ..+.++.+|||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 150 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQ 150 (249)
T ss_pred cccchHHHHhheeEEecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHH
Confidence 2358999999643 32 699999987644333221 1122345556666653 2345677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |+++..|++.+
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQV 230 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999994 3344444432 25799999998776 444 88888888766
Q ss_pred HH
Q 021380 281 VA 282 (313)
Q Consensus 281 ~~ 282 (313)
+.
T Consensus 231 ~~ 232 (249)
T PRK14253 231 IF 232 (249)
T ss_pred HH
Confidence 53
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=258.45 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=155.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 67899999998776 9999999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHH-h---cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
+.++|++|+...++ .+|+.+|+.+... . +..+.....+++.++++.++. ..+.++..|||||+||++||+++
T Consensus 75 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 75 RRVALVEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred hheEEecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 35899999863322 4799999877421 1 111112233456778888774 34677889999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. |++ |++++.|+.+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999994 3444444432 24799999999865 554 8888888877654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=259.28 Aligned_cols=201 Identities=11% Similarity=0.065 Sum_probs=156.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~--- 148 (313)
+.++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 36 ~~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CCceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 456899999999998766 999999999999999999999999999999999998510 04899999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.....+.+. ....++.++++.++.. .+.++.+|||||||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred ccchHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 2358999999643 32 489999987655443322 2344567778777642 35677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HH-H----hhhhccCChhHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RV-L----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rv-i----gr~v~~G~~~e~ 281 (313)
|++||++++.++++|++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |+ + |+++..|.+.++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999994 4444444433 25799999998866 53 2 788888877665
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 268 ~ 268 (285)
T PRK14254 268 F 268 (285)
T ss_pred H
Confidence 4
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=260.30 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=157.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 4799999999997521 128999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|++...+. ..++.+|+.+.....+.......+.+.++++.++. ..+.++.+||+||+||++||++++.
T Consensus 81 ~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2358999999632222 36788888776544333222233456778888874 3466778999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+++++++|+|+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999 34455555432 24799999998765 444 88888888877644
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=255.25 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=155.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCceeeeCCCCC----
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p----~~G~i~~~~~~~---- 148 (313)
+|+++||++.| +.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 69999999999 445 9999999999999999999999999999999999998 8 999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCCcchhhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|++...+.+.+++.+++.+.....+.. ...+.+.++++.++.. .+..+.+|||||+||++||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 24599999996422333467777766543333322 2335677888888854 35677899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++ |+++..|++.++.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999983 4455555533 24799999999865 444 8888888877764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=257.12 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=155.4
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 19 ~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 4799999999998766 999999999999999999999999999999999998500 04799999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekqR 216 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.++++.++. ..++++.+|||||+||
T Consensus 95 ~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred ChHHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 2358999998543 32 599999987654333211 1223445667777664 2356778999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999994 4444444432 25799999998765 544 8888899887764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=252.39 Aligned_cols=190 Identities=19% Similarity=0.120 Sum_probs=153.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCeEE
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVAT 153 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~i~ 153 (313)
|+++|+++.|+++. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.++
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988642 24689
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
|++|++..++ .+|+.+|+.+.....+. ....+.++++.++.. .+..+..||+||+||++||++++.++++++
T Consensus 74 ~~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 74 SLIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999864333 47999999876544332 235677888888743 456777999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.+
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999994 4444444432 24799999998865 544 78877777643
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=250.70 Aligned_cols=178 Identities=14% Similarity=0.103 Sum_probs=140.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++.. . |+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~~~~l~~~~~~~~----~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP----M--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe----c--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46899999998643 3 9999999999999999999999999999999999 9999999998642 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+.............+++.++++.++.. .+.++.+|||||+||++||++++.++++
T Consensus 72 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965333 479999987653211111122345677888888743 4667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +++.|.++.. .+|++|||++++..
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 9999999999994 4444444432 24799999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=250.76 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=144.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 9999999998542
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~ 224 (313)
...++|++|++.. +. .|+.+|+.+....++. ......+.++++.++.. .+.++.+||+||+||++||++++
T Consensus 79 ~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 79 YRQQVSYCAQTPTL-FG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred HHhccEEEeccccc-cc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2358999999643 32 4999998875443322 12234567888888753 36778899999999999999999
Q ss_pred cCccEEEEcCcccccChhhH----HHHHHhhc----CeEEEEcChHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGGVW----KDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~~~----~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
.+++++++|+|+..||.... +.+.++.. .+|++|||++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999999999999999444 34444432 2579999999874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=280.46 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=158.3
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
++++|+++||++.|+++. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 345899999999998766 9999999999999999999999999999999999999 99999999885421
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
..++|++|+...++ .+|+.+|+.+.... .....+++.++++.++. ..++++.+||||||||++||++
T Consensus 81 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFP--NLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HHHHhCCEEEEeccCccCC--CCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence 34899999964333 48999998764321 12234567788888884 3467788999999999999999
Q ss_pred cccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999994 4444444433 24799999998876 544 8888888877654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=253.83 Aligned_cols=198 Identities=10% Similarity=0.086 Sum_probs=152.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC---
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~--- 148 (313)
+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+|+|+|+++ |+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 689999999998766 9999999999999999999999999999999999987 64 89999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgGek 214 (313)
...++|++|++..++ .+|+.+|+.+.....+.... ...+.+.++++.++. ..++++..|||||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 235899999965333 47999999875443322111 112334444554432 23567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++.+.. |++ |++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999994 3444444432 24799999998875 444 888888888776
Q ss_pred HH
Q 021380 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 235 ~~ 236 (252)
T PRK14272 235 FT 236 (252)
T ss_pred Hh
Confidence 43
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=259.67 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=157.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++||++.|++.. ...+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 799999999997421 1238999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 149 PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 ~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
...++|++|++. .++ ..|+.+|+.+.....+.......+++.++++.++. ..++++..|||||+||++||++++.
T Consensus 80 ~~~i~~v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 80 RRKIGMVFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred hcceEEEEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 235899999952 223 36999999876543332222223456677777763 3456778999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+++++++|+|+..||.. +++.+.++.+ .+|++|||++++.. +++ |++++.|+++++..
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999994 4444444433 25799999999865 444 88888898887754
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=267.74 Aligned_cols=189 Identities=11% Similarity=0.090 Sum_probs=151.8
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------------C
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------P 149 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------------~ 149 (313)
||+|.|++.. + ++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~l~~~~~~~~----~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS----L--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE----E--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7999998754 4 8999999999999999999999999999999999 9999999988532 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+..... .......++.++++.++.. .++++.+||||||||++||++++.++
T Consensus 75 ~~i~~v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 75 RRIGYVFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred CCeEEEecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45899999964333 489999998765422 1122234577888888743 46778899999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|++|+|+..||.. +++.|.++.. .+|++|||++++.. +++ |+++..|++.++..
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999994 4555555443 25799999998865 544 88888898887754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=256.48 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=154.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
.+|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 4799999999998766 999999999999999999999999999999999998610 13899999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCccCCCcc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+... +. .|+.+|+.+.....+.. ....+.+.++++.++. ..+.++.+||||||||+
T Consensus 88 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred CHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 1358999999643 32 49999998765433322 1223445666777653 24667789999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH---------------hhhh
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL---------------KRHI 273 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi---------------gr~v 273 (313)
+||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 9999999999999999999999984 4444444432 25799999998876 332 3467
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
+.|++.++..
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 7888887754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=252.96 Aligned_cols=200 Identities=14% Similarity=0.099 Sum_probs=154.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~----- 148 (313)
++|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 3799999999998766 99999999999999999999999999999999999850 012799999988642
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhcC------CCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqR 216 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.... .....+.++++.++.. .+.++.+|||||+||
T Consensus 79 ~~~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred hHHHhhccEEEEecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 2358999999643 32 6999999876544332211 1223456677776642 356677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999444 44444322 25799999998765 554 8888888877664
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=253.36 Aligned_cols=195 Identities=16% Similarity=0.038 Sum_probs=149.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~------- 148 (313)
|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|++ + |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 46899999998766 999999999999999999999999999999999994 6 9999999998642
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-C------CCCccHHHHHHHHHHhhcC---CCccCC-CCCccCCC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVGD 215 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgGekq 215 (313)
...++|++|++..++ .+|+.+++.+...... . ......+.+.++++.++.. .++.+. .|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIP--GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred hhccceEeeeccccccC--CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 123789999965433 4799999877543221 1 1111134567788888753 355665 59999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH----HHH----hhhhccCChhH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPD 280 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~~e 280 (313)
|++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++..|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 999999999999999999999999993 4445554432 25799999998754 333 77777777654
Q ss_pred H
Q 021380 281 V 281 (313)
Q Consensus 281 ~ 281 (313)
+
T Consensus 232 ~ 232 (243)
T TIGR01978 232 A 232 (243)
T ss_pred h
Confidence 3
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=281.00 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=157.2
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|+++. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 5799999999998776 9999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCC---CCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAP---WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~---~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+...++ .+|+.+|+.+.... ++.. .....+++.++++.++. ..++++.+|||||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 77 AAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 135899999964333 48999998764321 1211 11223456788888884 34677889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|.++++.
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999994 4444444433 25799999999876 554 8888888877653
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=257.98 Aligned_cols=202 Identities=11% Similarity=0.113 Sum_probs=155.8
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCceeeeCCCCC--
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP-- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p---~~G~i~~~~~~~-- 148 (313)
+.++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~-p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLI-PSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-CCCCCceEEEECCEEhhh
Confidence 345799999999998766 999999999999999999999999999999999985200 3 899999988532
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ....+.+.++++.++. ..+.++..|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred cccchHHhhhcEEEECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 2359999999643 32 499999988654433221 1123345566666653 2356778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |+++..|++.+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999984 4444444433 25799999999865 544 88888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 268 ~~~ 270 (286)
T PRK14275 268 LFT 270 (286)
T ss_pred HHh
Confidence 643
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=253.60 Aligned_cols=190 Identities=17% Similarity=0.136 Sum_probs=147.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~v 72 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGYV 72 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEEe
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999873 349999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
+|+......-..++.+++.+ . .....+.+.++++.++.. .++++..|||||+||++||++++.+++++++|
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 145 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRL----R---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD 145 (251)
T ss_pred ccccccccccChhHHHHHhc----c---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99954322111244443321 1 112234567788888743 45678899999999999999999999999999
Q ss_pred CcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH---HHH---hhhhccCChhHHH
Q 021380 234 GNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 234 ~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~ 282 (313)
+|+..||... ++.|.++.. .+|++|||++++.. |++ ++++..|++.++.
T Consensus 146 EPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 9999999843 344444332 24799999999866 444 6667788877664
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=257.81 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=151.3
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CC
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~ 150 (313)
+|+++||++.|+ ++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence 699999999996 455 9999999999999999999999999999999999999 9999999998642 23
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.++|++|++........++.+++.+.... ...+.......+.++++.++. ..++++.+|||||+||++||++++
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 58999998532221123566666432110 011112233456677788774 346778899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH---hhhhccCChhHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~ 282 (313)
.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|++.++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 999999999999999994 4444444432 25799999998866 444 8888888877753
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=248.08 Aligned_cols=188 Identities=14% Similarity=0.094 Sum_probs=146.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
++++||++.|+. ++.++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999973 5679999999999999999999999999999999999 9999999998642 245
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+...............+.++++.++. ..++.+..||+||+||++||++++.++++
T Consensus 72 i~~v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965333 47999998765332111111234456778888874 34667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
+++|+|+..||.. +.+.|.++.+ .+|++|||.+++.. +++ |++++.|
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999999999994 4445555432 24799999998764 443 5555554
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=245.09 Aligned_cols=180 Identities=14% Similarity=0.030 Sum_probs=145.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----C
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----P 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~ 149 (313)
.++|+++|+++.|+++. +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|... .
T Consensus 9 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS 81 (214)
T ss_pred cceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence 35799999999998766 9999999999999999999999999999999999999 9999999998643 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|++..+ +.+|+.+|+.+....++. ...+.+.++++.++. ..+.++..||+||+||++|+++++.++
T Consensus 82 ~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLK--ADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccc--cCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3489999985432 247999998876543331 133456677787773 346778899999999999999999999
Q ss_pred cEEEEcCcccccChhhHHHH----HHhhc---CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGGVWKDV----SSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l----~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||....+.+ .++.+ .+|++|||++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 99999999999999444433 33322 24799999998765
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=251.07 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=156.5
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|+++. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46899999998776 9999999999999999999999999999999999999 9999999988642 246
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...+. .+|+.+|+.+....++.........+..+++.++.. .+..+..||+||+||++||++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999965433 479999988765544322222344567778887743 4667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|+|+..||.. +++.+.++.. .+|++|||++++.. |++ |++++.|...++..
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999994 4444444432 34799999998765 444 78888887666543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=257.88 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=154.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------CceeeeCCCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVKP 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~--------~G~i~~~~~~~ 148 (313)
||+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 489999999998776 9999999999999999999999999999999999998 87 99999998643
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGek 214 (313)
.+.++|++|+...++ .+|+.+|+.+..... +.......+.+.++++.++. ..++++.+|||||+
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 124799999864333 379999987643211 11111233456778888774 34677889999999
Q ss_pred Ccchhhhhcc---------cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----h
Q 021380 215 DPVEDDILVG---------LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 215 qRv~la~al~---------~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----g 270 (313)
||++||++++ .++++|++|+|+..||.. +++.|.++.. .+|++|||++.+.. +++ |
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 599999999999999993 4444444432 24799999998865 444 8
Q ss_pred hhhccCChhHHH
Q 021380 271 RHISTGKPPDVA 282 (313)
Q Consensus 271 r~v~~G~~~e~~ 282 (313)
++++.|++.++.
T Consensus 232 ~i~~~g~~~~~~ 243 (272)
T PRK13547 232 AIVAHGAPADVL 243 (272)
T ss_pred eEEEecCHHHHc
Confidence 888888877764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=246.61 Aligned_cols=185 Identities=18% Similarity=0.116 Sum_probs=142.3
Q ss_pred eEEEccceeEccccc---cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC--CC--CC-
Q 021380 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV--KP- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~---~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~--~~--~~- 148 (313)
||+++||++.|++.. ....+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++ |. +.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 488999999996310 01238999999999999999999999999999999999999 999999997 32 21
Q ss_pred -----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
...++|++|+...++ .+|+.+|+.+.....+.......+.+.++++.++.. .+.++.+|||||+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIP--RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHH
Confidence 135899999964333 479999988754433322222344667788888743 2567789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
||++||++++.+++++++|+|+..||... .+.|.++.+ .+|++|||.+.+..
T Consensus 156 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999943 444444332 24799999887753
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=245.82 Aligned_cols=177 Identities=15% Similarity=0.051 Sum_probs=143.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~ 151 (313)
||+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 699999999998766 9999999999999999999999999999999999999 9999999998652 235
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+. ....+.++++.++.. .+.++.+|||||+||++||++++.++++
T Consensus 75 ~~~~~~~~~~~~--~~tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 75 CHYLGHRNAMKP--ALTVAENLEFWAAFLGG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred cEEecCCCcCCC--CCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 788987754322 47999998775443321 234567888888743 3567779999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+++|+|+..||.. +++.|.++.+. +|++|||.+++..
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 9999999999984 44444443322 4799999988765
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=278.47 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=157.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
.+||+++||++.|++......+|++|||+|.+||++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEecc
Confidence 3579999999999631001129999999999999999999999999999999999997 6 799999988542
Q ss_pred -----------CCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCc
Q 021380 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDH 211 (313)
Q Consensus 149 -----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSg 211 (313)
.+.++|++|++.....+.+++.+++.+.... .+.+.....+++.++++.++.. .++++.+|||
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 1358999999632122346888887654332 2333223345678888888853 3667889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
||||||+||++++.++++|++|||+..||+ .+++.|.++.+ .+|+||||++.+.. |++ |+++..|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999 34455555432 25799999998875 555 8888888
Q ss_pred ChhHHH
Q 021380 277 KPPDVA 282 (313)
Q Consensus 277 ~~~e~~ 282 (313)
.+.++.
T Consensus 240 ~~~~~~ 245 (529)
T PRK15134 240 RAATLF 245 (529)
T ss_pred CHHHHh
Confidence 877664
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=251.31 Aligned_cols=198 Identities=11% Similarity=0.100 Sum_probs=153.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~-- 148 (313)
++|+++||++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 4799999999998766 9999999999999999999999999999999999998 76 69999988542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgGe 213 (313)
.+.++|++|++..+ + .|+.+|+.+....++.... ...+.+.++++.++. ..+..+..|||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred cccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 24599999996533 2 4899999876544332211 122345555665552 2456778999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. +++ |+++..|++.+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999984 3444444432 25799999999876 444 78888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14249 233 IFS 235 (251)
T ss_pred HHh
Confidence 643
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=256.18 Aligned_cols=198 Identities=14% Similarity=0.099 Sum_probs=154.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~-- 148 (313)
++|+++||++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4799999999998776 9999999999999999999999999999999999997 6 699999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
...++|++|++.. ++ +|+.+|+.+....... ........+.++++.++.. .+..+..|||||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred cchhHHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 2358999999643 32 6999998876432221 1111223345667777642 2456779999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||... .+.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999943 344444332 35799999998776 554 888888888777
Q ss_pred HH
Q 021380 282 AK 283 (313)
Q Consensus 282 ~~ 283 (313)
..
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 54
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=251.62 Aligned_cols=200 Identities=14% Similarity=0.087 Sum_probs=154.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCceeeeCCCCC---
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP--- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p---~~G~i~~~~~~~--- 148 (313)
.++|+++|+++.|+++. +|+|+||+|.+|++++|+||||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLI-PGCRITGDILYNGENIMDS 78 (253)
T ss_pred cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCC-CCCCcceEEEECCEEcccc
Confidence 45799999999998776 999999999999999999999999999999999987500 2 489999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.+....++... ......+.++++.++. ..+..+..||+||+
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred ccchhhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 2358999999643 32 499999987655443221 1123345566666653 23567779999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++||++++.+++++++|+|+..||.... +.|.++.+ .+|++|||++++.. +++ |+++..|++.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999443 44444332 35799999998865 444 888888888776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 236 ~ 236 (253)
T PRK14261 236 F 236 (253)
T ss_pred H
Confidence 4
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=251.34 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=154.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC-
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~- 148 (313)
+.+|+++||++.|++.. +|+|+||+|.+|++++|+|+||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 45799999999998766 9999999999999999999999999999999999987 5 489999988542
Q ss_pred ---------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhc------CCCccCCCCCcc
Q 021380 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 212 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgG 212 (313)
...++|++|++.. +. +|+.+|+.+.....+. +.....+.+.++++.++. ..+.++.+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred ccccchHhhhhheEEEeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 1358999999643 32 7999999876443321 211223445667776653 245677799999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HH--H-------hhhhc
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L-------KRHIS 274 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rv--i-------gr~v~ 274 (313)
|+||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. |+ + |++++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 999999999999999999999999999984 4444444432 25799999999876 32 2 67777
Q ss_pred cCChhHHHH
Q 021380 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~e~~~ 283 (313)
.|++.++..
T Consensus 235 ~~~~~~~~~ 243 (259)
T PRK14260 235 FGVTTQIFS 243 (259)
T ss_pred eCCHHHHhc
Confidence 888877643
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=276.28 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=157.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeC-----------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS----------- 144 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~----------- 144 (313)
|+++|+++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|++ + |++|+|.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 57899999998766 999999999999999999999999999999999996 7 999999886
Q ss_pred ------------CCC------------------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHH
Q 021380 145 ------------QVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC 194 (313)
Q Consensus 145 ------------~~~------------------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 194 (313)
|.+ ..+.++|++|+...++. .+|+.+|+.+.....+.+.....+++.++
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 210 02348999997323232 47999999886554443332334567788
Q ss_pred HHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHH
Q 021380 195 LKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 195 l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.++.. .++++.+|||||||||+||++++.++++|++|+|+..||.. +++.|.++.. .+|+||||++.+
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 8888843 36678899999999999999999999999999999999994 3444455532 257999999988
Q ss_pred HH---HHH----hhhhccCChhHHHHHH
Q 021380 265 MQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 265 ~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
.. |++ |+++..|.+.++...+
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 65 544 7888888887776543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=251.43 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=155.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|+++. +|+++||++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 46899999998776 9999999999999999999999999999999999999 9999999988552 245
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..++.+..||+||+||++|+++++.++++
T Consensus 74 i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999864332 47999999876544332222233456777888774 34667789999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++|+|+..||.. +++.+.++.. .+|++||+++++.. |++ |++++.|+.+++.
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999994 4444444432 25799999998765 544 8888888877664
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=252.55 Aligned_cols=200 Identities=12% Similarity=0.077 Sum_probs=151.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
++|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 4799999999998766 999999999999999999999999999999999998510 02799999988542
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCccCCCcc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+... +. .|+.+|+.+.....+.. ....+.+.++++.++. ..+..+.+|||||+||+
T Consensus 85 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ChHHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 2358999998643 32 48999988764432221 1122344555555543 24567779999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH-------------hhhhcc
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL-------------KRHIST 275 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi-------------gr~v~~ 275 (313)
+||++++.++++|++|+|+..||.... +.|.++.+ .+|++|||++++.. |++ |++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999444 44443332 35799999998876 332 677778
Q ss_pred CChhHHHH
Q 021380 276 GKPPDVAK 283 (313)
Q Consensus 276 G~~~e~~~ 283 (313)
|.+.++..
T Consensus 241 ~~~~~~~~ 248 (264)
T PRK14243 241 DRTEKIFN 248 (264)
T ss_pred CCHHHHHh
Confidence 88877753
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=242.16 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=152.6
Q ss_pred ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccC
Q 021380 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 172 (313)
Q Consensus 93 ~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~ 172 (313)
...+|+||||++++||.+||+|+||||||||+|+|+|.++ |++|+|.++|. +..+..-+.- +++++|.+||
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~-----v~~li~lg~G-f~pelTGreN 109 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGK-----VAPLIELGAG-FDPELTGREN 109 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcce-----EehhhhcccC-CCcccchHHH
Confidence 3559999999999999999999999999999999999999 99999999875 3322222111 3346999999
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHH--hhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhh----HHH
Q 021380 173 PKEAHARRGAPWTFNPLLLLNCLKN--LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKD 246 (313)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~ 246 (313)
+.+.....|...++..+++.++.++ ++...+.++.+||-||+.|++++.+...++++|++|+-+..-|+.+ .+.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 9999888888777777777777665 4467788999999999999999999999999999999999999943 334
Q ss_pred HHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHHHHH
Q 021380 247 VSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 287 (313)
Q Consensus 247 l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~~~ 287 (313)
+.++.. .+|+||||++.+.+ |++ |++...|++++++..|..
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 444422 25799999999988 555 999999999999988654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=249.49 Aligned_cols=200 Identities=15% Similarity=0.104 Sum_probs=153.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCceeeeCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP---- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p---~~G~i~~~~~~~---- 148 (313)
+||+++||++.|+++. +|+++||+|.+|+++||+|+||||||||+++|+|+++.. | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLI-PGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-CCCCcccEEEEcCEEccccc
Confidence 4799999999998766 999999999999999999999999999999999986300 3 589999988642
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.... ...+.+.+.++.++. ..+..+.+||+||+|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred ccHHHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH
Confidence 2359999998643 32 5999999876544332211 112344556666653 235677799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999994 3344444432 35799999998865 544 8888888877764
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 236 ~ 236 (252)
T PRK14255 236 L 236 (252)
T ss_pred c
Confidence 3
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=249.10 Aligned_cols=195 Identities=14% Similarity=0.169 Sum_probs=154.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++|+++.|++ . +|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+.
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468999999975 3 8999999999999999999999999999999999999 9999999998643 236
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
++|++|+...++ .+|+.+|+.+.....+.......+.+.++++.++.. .+.++..|||||+||++||++++.++++
T Consensus 73 i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 899999964332 479999998765443322222334567788887743 4667789999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++|+|+..||. .+++.++++.. .++++||+++++.. |++ |++++.|+..++.
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999 34455555432 24799999998765 444 8888888766553
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=277.11 Aligned_cols=205 Identities=15% Similarity=0.176 Sum_probs=158.2
Q ss_pred CCeEEEccceeEccccc-------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.++|+++||++.|+... ....+|++|||+|++|+++||+||||||||||+|+|+|++ |++|+|+++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~ 348 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQP 348 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEE
Confidence 35799999999996210 0123899999999999999999999999999999999998 789999998853
Q ss_pred C-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCCCc
Q 021380 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 148 ~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
. ...++|++|+......+.+|+.+|+.+....++ .+.....+++.++++.++.. .++++.+|||
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence 2 235899999952112234799999987644332 22222335677888888853 4677889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
||||||+||++++.++++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 9999999999999999999999999999994 4455554432 25799999999876 554 8888888
Q ss_pred ChhHHHH
Q 021380 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~e~~~ 283 (313)
+++++..
T Consensus 509 ~~~~~~~ 515 (529)
T PRK15134 509 DCERVFA 515 (529)
T ss_pred CHHHHhc
Confidence 8877743
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=252.86 Aligned_cols=201 Identities=10% Similarity=0.065 Sum_probs=153.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ ..+|++|+|.++|.+.
T Consensus 22 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred ceEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 45899999999998766 9999999999999999999999999999999999985 1124899999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhh------cCCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLR------NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~------~~~~~~~~~LSgGekq 215 (313)
.+.++|++|++.. +. .|+.+|+.+.....+.... .....+.+.++.++ ...+.++..|||||+|
T Consensus 98 ~~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccHHHHhhhEEEEecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 2358999999643 32 4999999876543332211 11223445555442 2235677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999443 33434332 25799999998765 444 8888888877664
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=252.94 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=154.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~---- 148 (313)
.++|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 45799999999998766 99999999999999999999999999999999999860 002799999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhcC------CCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.....+... ....+.+.++++.++.. .+..+.+|||||+|
T Consensus 99 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNP-FP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cCHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 2358999998643 32 399999987644333211 11234456667766632 35667899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||... ++.+.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999999944 344444432 25799999998765 544 8888888877664
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=275.29 Aligned_cols=203 Identities=16% Similarity=0.211 Sum_probs=155.6
Q ss_pred CCeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC-CCC-----
Q 021380 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVK----- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~-~~~----- 147 (313)
.++|+++||++.|++. .....+|+|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.++ |..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 4589999999999530 001128999999999999999999999999999999999999 999999994 421
Q ss_pred ---------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCCCCCc
Q 021380 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDH 211 (313)
Q Consensus 148 ---------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~~LSg 211 (313)
..+.++|++|+...+ +.+|+.+|+.+.... ..+.....+++.++++.++.. .++++.+|||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg 430 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE 430 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccC--CCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH
Confidence 123589999985432 358999999875322 222222234567888888853 3577889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++++.. |++ |++++.|
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g 510 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999994 4444444432 25799999999876 444 7888888
Q ss_pred ChhHHHH
Q 021380 277 KPPDVAK 283 (313)
Q Consensus 277 ~~~e~~~ 283 (313)
.+.++..
T Consensus 511 ~~~~~~~ 517 (520)
T TIGR03269 511 DPEEIVE 517 (520)
T ss_pred CHHHHHh
Confidence 7776643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=246.03 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=138.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
+.+ ||+|+|++.. + |+||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 445 8999999865 5 99999999 9999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+....+ ......+++.++++.++.. .+.++.+||||||||++||+++
T Consensus 71 ~~~~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (214)
T cd03297 71 PPQQRKIGLVFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL 146 (214)
T ss_pred hhHhhcEEEEecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH
Confidence 235899999964332 479999988754322 1112344577888888743 3667789999999999999999
Q ss_pred ccCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||... .+.+.++.+ .+|++|||++++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 99999999999999999943 444444432 24799999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=240.73 Aligned_cols=175 Identities=13% Similarity=0.003 Sum_probs=141.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 488999999998766 9999999999999999999999999999999999999 99999999987532
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|++|+...++ .+|+.+|+.+..... . ....+.++++.++. ..++++..||+||+||++||++++.++
T Consensus 74 ~~i~~~~q~~~~~~--~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 74 KQLCFVGHRSGINP--YLTLRENCLYDIHFS---P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred hheEEeccccccCc--CCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35899999854322 489999988753211 1 23456778887774 335667799999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+++++|+|+..||.. +.+.|.++.+ .+|++||+.+.+.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 999999999999994 4444444322 2479999987764
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=245.57 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=143.2
Q ss_pred CCeEEEccceeEcccccc-----ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC
Q 021380 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~-----~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~ 149 (313)
+++++++||+|.|..... .+.+++||||+|++||++||+|+||||||||.|+|+|+++ |++|+|+++|.+..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 468999999999964311 2459999999999999999999999999999999999999 99999999886521
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhhcccC
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
. ++ .....+++.++|+.++. ...+++++|||||+||+.||+|++.+
T Consensus 79 ~----------------~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 79 K----------------LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred h----------------cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 1 11 12234568889999883 35678889999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+++++.|+++..||- .++..+.++.+. .+|||||+..+.. |++ |++++.|..+++..+
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 999999999999998 344444444332 3799999999987 555 999999999988763
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-33 Score=240.37 Aligned_cols=175 Identities=15% Similarity=0.029 Sum_probs=140.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 46899999998876 9999999999999999999999999999999999999 9999999998652 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+... + +.+|+.+|+.+.....+ .....+.++++.++. ..++++.+|||||+||++||++++.+++
T Consensus 74 ~i~~~~q~~~~-~-~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 74 NILYLGHLPGL-K-PELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred heEEeccCccc-c-cCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 58899988543 2 24799999987654332 123456778888774 3466788999999999999999999999
Q ss_pred EEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 229 VVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 229 ~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
++++|+|+..||.. +++.|.++.+ .+|++||+...+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 99999999999983 4444444422 2579999976543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-33 Score=241.01 Aligned_cols=174 Identities=16% Similarity=0.030 Sum_probs=140.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++||++.|+++. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 46899999998776 9999999999999999999999999999999999999 9999999988652 23
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+...++ .+|+.+|+.+.... ...+++.++++.++.. .++++.+|||||+||+++|++++.+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 74 GLLYLGHAPGIKT--TLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred heEEeccccccCC--CcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999854322 47999998764211 1345677888888743 466778999999999999999999999
Q ss_pred EEEEcCcccccChhhHH----HHHHhhc---CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVWK----DVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~----~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||....+ .+.++.+ .+|++|||......
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 99999999999994444 4433322 24799999776543
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-33 Score=249.40 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=134.0
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CCeEEEEec
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 157 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~~i~~v~q 157 (313)
+.|+.+. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+.++|+++
T Consensus 29 ~~~~~~~----il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~ 101 (236)
T cd03267 29 RKYREVE----ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101 (236)
T ss_pred cccCCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcC
Confidence 4455544 9999999999999999999999999999999999999 9999999988542 235889874
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
+...++ +.+|+.+|+.+....++.........+.++++.++. ..+.++..|||||+||++||++++.+++++++|+|
T Consensus 102 ~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 102 QKTQLW-WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CccccC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 422222 247999998876554443222223455677777763 34667789999999999999999999999999999
Q ss_pred ccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 236 YLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+..||.. +.+.|.++.+ .+|++|||++++..
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 9999994 4444444432 24799999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-33 Score=240.74 Aligned_cols=163 Identities=17% Similarity=0.099 Sum_probs=129.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----------CCeEEEEeccCC-CCCc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------PDVATVLPMDGF-HLYL 164 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----------~~~i~~v~q~~~-~~~~ 164 (313)
+|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++. .++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 82 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF- 82 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence 9999999999999999999999999999999999999 9999999988542 235899999863 223
Q ss_pred ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh
Q 021380 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (313)
Q Consensus 165 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~ 242 (313)
..|+.+|+.+....++.......+++.++++.++. ..++++.+|||||+||++||++++.+++++++|+|+..||..
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 26999999876443332222223456778888774 346677899999999999999999999999999999999994
Q ss_pred ----hHHHHHHhhc---CeEEEEcChHH
Q 021380 243 ----VWKDVSSMFD---EKWFIEVDLDT 263 (313)
Q Consensus 243 ----~~~~l~~l~~---~~i~vtHd~~~ 263 (313)
+.+.|.++.+ .+|++|||+++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 4444444432 24799999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-33 Score=266.90 Aligned_cols=194 Identities=15% Similarity=0.134 Sum_probs=160.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
+++|+++|++|+|++.. +|++|||++.+||++||+|.||||||||+|+|+|.++ |++|+|.++|+...
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 46899999999999988 9999999999999999999999999999999999999 99999999997532
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcC----CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~l 219 (313)
.-|..|+|+....+ ++||.||+.++..... ..++....++.++|+.++. ..+.++.+||.||||.|+|
T Consensus 79 ~A~~~GI~~V~QEl~L~p--~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLVP--NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhccC--CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 23889999965444 5999999987654322 1223344566778888874 3667888999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
|+|+..+++++++|+|+.-|++ .+++.++++.+. +|||||.++++.+ |+. |+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999998 566677777665 4799999999988 554 77776544
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-32 Score=249.14 Aligned_cols=200 Identities=14% Similarity=0.098 Sum_probs=155.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC------CCC
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------VKP 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~------~~~ 148 (313)
.++|+++|+++.|+++. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++| .+.
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 45799999999999877 9999999999999999999999999999999999998 9997766654 321
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC-CCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
...++|++|++..++ .+|+.+|+.+.....+.. .......+.++++.++.. .+..+..||+||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 245899999965433 479999998764432221 112234566777777742 345677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
+||++||++++.+++++++|+|+..||... .+.+.++.+ .+|++|||++.+.. |++ |+++..|.+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999944 444443332 35799999998865 544 88888888777
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 239 ~~~ 241 (257)
T PRK14246 239 IFT 241 (257)
T ss_pred HHh
Confidence 653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-33 Score=274.10 Aligned_cols=194 Identities=12% Similarity=0.119 Sum_probs=152.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 2 SPYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred CceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence 35899999999998766 9999999999999999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHH--hcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...++ .+|+.+|+.+... ..+ .......+++.++++.++.. .++++.+||||||||++||
T Consensus 75 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 75 AALAAGVAIIYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHhCCEEEEEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 235899999864333 4899999887532 111 11112234677888888843 4667789999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
++++.+++++++|+|+..||.... +.|.++.+ .+|++|||++++.. |++ |+++..+.
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999444 44444332 25799999998875 444 66665443
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=250.36 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=152.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP--- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~--- 148 (313)
..++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 17 ~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 345899999999998766 999999999999999999999999999999999998510 01589999988542
Q ss_pred -------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 -------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
...++|++|+... +. .|+.+|+.+.....+... ...+.+.+.++.++. ..+.++.+|||||+|
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred cchhHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHH
Confidence 2358999999643 32 489999887643332211 122334555665542 245677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HH-------------Hhhhh
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RV-------------LKRHI 273 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rv-------------igr~v 273 (313)
|++||++++.++++|++|+|+..||.... +.|.++.+ .+|++|||++++.. |+ -|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999444 44444332 25799999999876 32 15777
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
+.|++.++..
T Consensus 249 ~~g~~~~~~~ 258 (274)
T PRK14265 249 EFSPTEQMFG 258 (274)
T ss_pred EeCCHHHHHh
Confidence 7888877753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-32 Score=248.42 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=153.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~i~~~~~~~-- 148 (313)
++|+++|+++.|++.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 4799999999998765 9999999999999999999999999999999999998 75 79998887542
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC------CCccCCCCCccC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGe 213 (313)
.+.++|++|+.. ++. +|+.+|+.+.....+. +.....+.+.++++.++.. .+.++.+|||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred cccchHHhhccEEEEecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 234899999854 332 6999998876443332 1112234456777777642 356777999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH---------hhhh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---------KRHI 273 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi---------gr~v 273 (313)
+||++||++++.+++++++|+|+..||.. +.+.+.++.. .+|++|||++++.. |++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 99999999999999999999999999994 3444444321 24799999999876 332 5667
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
..|+++++..
T Consensus 236 ~~~~~~~~~~ 245 (261)
T PRK14258 236 EFGLTKKIFN 245 (261)
T ss_pred EeCCHHHHHh
Confidence 7788877643
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=271.88 Aligned_cols=195 Identities=15% Similarity=0.032 Sum_probs=152.5
Q ss_pred CCeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 ~~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
++||+++||++.|+ ++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~ 73 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG 73 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE
Confidence 35899999999998 666 9999999999999999999999999999999999999 99999998753 4599
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHh--------------cCCCCC----------------------ccHHHHHHHHHH
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNCLKN 197 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~--------------~~~~~~----------------------~~~~~~~~~l~~ 197 (313)
|++|++..+ +.+|+.+|+.+.... ...... ....++.++++.
T Consensus 74 ~v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 74 YLPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 999996432 258999998764210 011100 012345667777
Q ss_pred hhc-CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH
Q 021380 198 LRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL 269 (313)
Q Consensus 198 l~~-~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi 269 (313)
++. ..++++.+|||||||||+||++++.++++|++|+|+..||+...+.+.+++. .+|+||||++++.. +++
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE
Confidence 774 3467788999999999999999999999999999999999955554444433 36799999999876 544
Q ss_pred ----hhhh-ccCChhHH
Q 021380 270 ----KRHI-STGKPPDV 281 (313)
Q Consensus 270 ----gr~v-~~G~~~e~ 281 (313)
|+++ ..|+..+.
T Consensus 232 ~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 7765 56766653
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-32 Score=225.31 Aligned_cols=194 Identities=17% Similarity=0.157 Sum_probs=162.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------- 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------- 147 (313)
.|+++|+++.||... +|-||+|+.+.||.+.++||+|+|||||+|.|.-+.- |.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 388999999999988 9999999999999999999999999999999988887 999999887643
Q ss_pred -----CCCeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchh
Q 021380 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 148 -----~~~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~l 219 (313)
.++.+|++||.. ++++ ++||.+|+... .+..|.++.....++.++|+++. ...++.+-.|||||+|||+|
T Consensus 75 k~i~~lr~~vgmvfqqy-~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 75 KAIRDLRRNVGMVFQQY-NLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHHHHHHHhhhhhhhhh-ccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 134599999994 4443 69999997664 45667777667777889999888 45677777999999999999
Q ss_pred hhhcccCccEEEEcCcccccChh----hHHHHHHhhcCe---EEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~~---i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
|+|++..+.+|++|+|+.-||++ +.+.|+++...+ ++|||..+.+.+ +++ |++++.|+..
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999994 455566666555 599999999887 665 8999988643
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-32 Score=246.59 Aligned_cols=201 Identities=12% Similarity=0.108 Sum_probs=154.0
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~--~~~p~~G~i~~~~~~~---- 148 (313)
|-+|+++||++.|+++. +|+|+||+|.+|++++|+||||||||||+++|+|++. ..+|++|+|.++|.+.
T Consensus 1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 44799999999998766 9999999999999999999999999999999999863 1113899999998652
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC-CccHHHHHHHHHHhhc------CCCccCCCCCccCCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~LSgGekq 215 (313)
.+.++|++|++.. +. .|+.+|+.+....++... ....+.+.++++.++. ..+..+..||+||+|
T Consensus 77 ~~~~~~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccHHHHhhheEEEecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 2359999999643 32 489999987644332211 1123445666676653 235677899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||... .+.|.++.. .+|++|||++++.. +++ |+++..|++.++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999999999999999999999943 444444432 25799999998877 433 8888888877764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=299.93 Aligned_cols=202 Identities=15% Similarity=0.093 Sum_probs=168.2
Q ss_pred CCeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
..+|+++||+|.|++ +. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~----aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSP----AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred CceEEEEEEEEEECCCCce----EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchH
Confidence 357999999999985 34 9999999999999999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.+||++|++..+. .+|++|++.+....++.+.....+.+.++++.++. ..++++.+||||||||+++|+|+
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred HHHhhhEEEEeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 245999999865433 58999999987777766544334556778888874 45778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 285 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~~ 285 (313)
+.+++++++|||+..||+ .+++.|.++.+. +|++||+++++.. |++ |+++..|+++++...+
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999 455555555432 5799999999987 554 8899999998876554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-33 Score=250.61 Aligned_cols=191 Identities=14% Similarity=0.168 Sum_probs=145.4
Q ss_pred EEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++ .. +|+|+||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPDGPV----ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCCCcc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHH
Confidence 468999999964 33 8999999999999999999999999999999999999 9999999998652
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHH---------HHHHHHhh----cCCCccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLR----NQGSVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~---------~~~l~~l~----~~~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.+... .. ....+ .++++.+. ...+.++.+||||||
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~--~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~ 144 (237)
T cd03252 74 LRRQVGVVLQENVL-FN--RSIRDNIALADP--GM----SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQR 144 (237)
T ss_pred HhhcEEEEcCCchh-cc--chHHHHhhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHH
Confidence 2458999999643 32 699999865321 11 11111 22233331 112456789999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. +++ |+++..|++.++.
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999994 4444444432 24799999998854 443 8888888877765
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 225 ~~ 226 (237)
T cd03252 225 AE 226 (237)
T ss_pred hc
Confidence 44
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-33 Score=272.60 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=153.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCceeeeCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP------ 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p--~~G~i~~~~~~~------ 148 (313)
+|+++||++.|+++. +|+||||++++|+++||+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 488999999998766 9999999999999999999999999999999999997 7 799999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhc--C--CCCCccHHHHHHHHHHhhcCC---CccCCCCCccCCCcch
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|+...++ .+|+.+|+.+..... + .......+++.++++.++... ++++.+|||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHhCCEEEEeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 235899999964333 489999987754321 1 111122345678888888532 3567899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
||++++.+++++++|+|+..||... .+.|.++.+. +|++|||++++.. |++ |+++..|.+.++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999944 4444443332 4799999999876 444 787777766543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-32 Score=242.54 Aligned_cols=183 Identities=17% Similarity=0.066 Sum_probs=143.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
+|+++|+++.|++..+...+|+|+||++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37899999999752111239999999999999999999999999999999999999 9999999988642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC-CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhh
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..++ .+|+.+|+.+....+. .........+.++++.++.. .+..+.+||+||+||++||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHhheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 245999999964433 4799999987654332 12222234577888888743 456777999999999999999
Q ss_pred cccCccEEEEcCcccccChhh----HHHHHHhhc----CeEEEEcChHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~----~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
++.+++++++|+|+..||... .+.+.++.+ .+|++|||++..
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999944 455554432 247999999853
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-32 Score=247.22 Aligned_cols=198 Identities=11% Similarity=0.054 Sum_probs=150.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~--~~p~~G~i~~~~~~~------- 148 (313)
-+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 36899999998766 99999999999999999999999999999999999740 003699999988542
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC--CccHHHHHHHHHHhhcC------CCccCCCCCccCCCcc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~LSgGekqRv 217 (313)
.+.++|++|++.. +. .|+.+|+.+.....+... ......+.++++.++.. .+..+..|||||+||+
T Consensus 82 ~~~~~~i~~v~q~~~~-~~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 82 VLLRAKVGMVFQKPNP-FP--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HHHhhhEEEEecCccc-cc--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 2358999999643 32 389999887643333211 11233456777887742 2456779999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+||++++.+++++++|+|+..||.. +.+.|.++.. .+|++|||++++.. |++ |+++..|.+.++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999994 3444444432 25799999998765 554 8888888876654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=270.38 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=154.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|+++||++.|+++. +|+++||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+++. ..++|+
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~~ 387 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGYY 387 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEEE
Confidence 4899999999998766 9999999999999999999999999999999999999 99999999874 459999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
+|+....+.+.+|+.+++.+.. . .....+.+.++++.++. ..++++.+||||||||++||++++.++++|++
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 462 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWR----Q-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462 (530)
T ss_pred cccccccCCCCCcHHHHHHHhc----c-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9985322333478888765421 1 11234567788888874 24678889999999999999999999999999
Q ss_pred cCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhHHHH
Q 021380 233 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 233 d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e~~~ 283 (313)
|+|+..||....+.+.+++. .+|+||||++++.. |++ |+++ ..|++.++..
T Consensus 463 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999955444444432 36799999998876 444 7776 6777766543
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=247.30 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=153.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~-- 148 (313)
.+|+++|+++.|+++. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence 4699999999998766 9999999999999999999999999999999999986 5 799999987431
Q ss_pred ----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-ccHHHHHHHHHHhhc------CCCccCCCCCc
Q 021380 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 211 (313)
Q Consensus 149 ----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~LSg 211 (313)
...++|++|++..+ . .|+.+|+.+.....+.... ...+.+.++++.++. ..+..+..||+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 23589999996433 2 4899999876543332211 123445566666653 23456779999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||+||++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++.. |++ |++++.|..
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999444 44444332 25799999999875 554 888888887
Q ss_pred hHHH
Q 021380 279 PDVA 282 (313)
Q Consensus 279 ~e~~ 282 (313)
.++.
T Consensus 245 ~~~~ 248 (265)
T PRK14252 245 DTIF 248 (265)
T ss_pred HHHH
Confidence 7664
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-33 Score=272.40 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=154.0
Q ss_pred CeEEEccceeEcc---ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCCCCC---
Q 021380 76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP--- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~---~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~~~~--- 148 (313)
++|+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~ 330 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIK----RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIR 330 (506)
T ss_pred ceEEEecCccccccccccc----cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCC
Confidence 4799999999994 334 8999999999999999999999999999999999997 6 899999988542
Q ss_pred ------CCeEEEEeccCC-CCCcccCCcccCHHHHHH--hcCC---CCCccHHHHHHHHHHhhcC---CCccCCCCCccC
Q 021380 149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA--RRGA---PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (313)
Q Consensus 149 ------~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~--~~~~---~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGe 213 (313)
...++|++|+.. ....+.+|+.+|+.+... ..+. ......+.+.++++.++.. .++++.+|||||
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 331 NPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred CHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 134899999852 112234899999876532 1110 1112334577888998853 467788999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPP 279 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~ 279 (313)
||||+||++++.++++|++|+|+..||... ++.|.++.+. +|++|||++++.. |++ |+++..|+++
T Consensus 411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999943 3444444332 5799999999876 544 8888777766
Q ss_pred HH
Q 021380 280 DV 281 (313)
Q Consensus 280 e~ 281 (313)
++
T Consensus 491 ~~ 492 (506)
T PRK13549 491 NL 492 (506)
T ss_pred cC
Confidence 54
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-32 Score=269.87 Aligned_cols=193 Identities=10% Similarity=-0.021 Sum_probs=150.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
|.||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|....
T Consensus 1 m~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 1 MSSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred CceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHH
Confidence 34799999999998766 9999999999999999999999999999999999999 99999998775421
Q ss_pred ---CeEEEEeccCCCC-Cc-----ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcch
Q 021380 150 ---DVATVLPMDGFHL-YL-----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 ---~~i~~v~q~~~~~-~~-----~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~ 218 (313)
+.++|++|+.... .. ..+++.+++.+. ....+++.++++.++. ..++++.+||||||||++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence 2488999974321 10 124555554321 1234567788888874 346788899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
||++++.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++.+.. +++ |+++..|.++++.
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999994 4444444432 24799999998876 444 8888888877654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-32 Score=253.75 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=155.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~----- 148 (313)
.+|+++|+++.|.+.. ..+|+|+||+|++|+++||+|+||||||||+++|+|+.+.. .|++|+|.++|.+.
T Consensus 79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4799999999995311 12899999999999999999999999999999999998510 04699999998753
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc-cHHHHHHHHHHhhc------CCCccCCCCCccCCCc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~LSgGekqR 216 (313)
...++|++|++..+ . .|+++|+.+.....+..... ..+.+..+++.++. ..+.+...||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 24599999997543 2 69999998764332222111 12234566666653 2346677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++||+|++.++++|++|+|+..||... .+.|.++.+ .+|+|||+++++.. |++ |++++.|++.++..
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999944 344444443 25799999999876 555 99999999999864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-32 Score=243.72 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=144.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCceeeeCCCCC------CCeEEEEeccCCCCCcc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p----~~G~i~~~~~~~------~~~i~~v~q~~~~~~~~ 165 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+. .+.++|++|++...+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 5789999999999999999999999999999999998 8 899999998652 24699999996322333
Q ss_pred cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccC
Q 021380 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLD 240 (313)
.+|+.+++.+.....+.......+++.++++.++.. .++.+..|||||+||++||++++.+++++++|+|+..||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 478888887654433322222345577888888754 356778999999999999999999999999999999999
Q ss_pred hh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 241 GG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 241 E~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.. +.+.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 83 4455555442 24799999998865 444 8888888877764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=248.86 Aligned_cols=206 Identities=17% Similarity=0.183 Sum_probs=170.4
Q ss_pred CCeEEEccceeEccccc-------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
-++|++++|.+.|.-+. ...+++++|||++.+|+.+||+|.+|||||||-..|.+++ +.+|+|.++|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence 45899999999995321 2356899999999999999999999999999999999999 555999999976
Q ss_pred C-----------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC--CCCCccHHHHHHHHHHhhcC---CCccCCCCCc
Q 021380 148 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 148 ~-----------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
. ++.+.+||||+|-..++.|||.+.+..+....+ ....+..+++.+.|+.+|.. .+++++++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 2 346899999999888888999999998887654 22344556788888998844 4678899999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||||++||+|++..++++++|+|+.-||- .+++.++++.++ -+|||||+..+.. +++ |++|+.|
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999999999999999999999999998 455555555443 2699999999887 555 9999999
Q ss_pred ChhHHHHH
Q 021380 277 KPPDVAKW 284 (313)
Q Consensus 277 ~~~e~~~~ 284 (313)
+.+++..+
T Consensus 510 ~~~~if~~ 517 (534)
T COG4172 510 PTEAVFAN 517 (534)
T ss_pred CHHHHhcC
Confidence 99988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=270.63 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=152.0
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------CC
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PD 150 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------~~ 150 (313)
++||++.|+++. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 478999998766 9999999999999999999999999999999999999 9999999998642 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHH-hcCC--CCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~--~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.++|++|+...++ .+|+.+|+.+... ..+. ......+++.++++.++. ..++++.+|||||||||+||++++.
T Consensus 74 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 74 GISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred CEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 5899999964333 4899999876532 1111 111123456778888874 3466788999999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999994 4444444432 25799999998876 444 888888876664
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-32 Score=274.93 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=157.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||++.|+... ..+|+|+||+|++||++||+|+||||||||+|+|+|+++ |+.|+|.+||.+.
T Consensus 471 ~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 599999999998752 139999999999999999999999999999999999999 9999999999873
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.++|++||++.+. -|++||+.+. .|. .+.+.+.+.+...+ .+-+..+ ..|||||||
T Consensus 546 R~~ig~V~Q~~~Lf~---gSI~eNi~l~-----~p~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 546 RRQVGYVLQDPFLFS---GSIRENIALG-----NPE-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HhheeEEcccchhhc---CcHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 457999999976544 4999999875 222 22333444433333 2333333 389999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhh--cCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~--~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||++..+|++|++||++.-||+ .+.+.|.++. ...|+|+|.+..+.. |++ |+++++|+.+++..
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999999999999999 4555555665 446899999999988 665 99999999999876
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 697 ~ 697 (709)
T COG2274 697 Q 697 (709)
T ss_pred h
Confidence 5
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=268.95 Aligned_cols=194 Identities=12% Similarity=0.051 Sum_probs=153.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
||+++|+++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..++|++
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~~ 70 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKLR 70 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence 489999999998776 9999999999999999999999999999999999999 99999999874 3589999
Q ss_pred ccCCCCCcccCCcccCHHHHHH-h----------cCCCC---------------------CccHHHHHHHHHHhhcCC--
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHA-R----------RGAPW---------------------TFNPLLLLNCLKNLRNQG-- 202 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~-~----------~~~~~---------------------~~~~~~~~~~l~~l~~~~-- 202 (313)
|+...+ +.+|+.+++.+... . .+.+. .....++.++++.++...
T Consensus 71 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 71 QDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred ccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 986433 34799999875421 0 01000 011245667888887532
Q ss_pred -CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----h
Q 021380 203 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 -~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----g 270 (313)
+.++.+||||||||++||++++.++++|++|+|+..||....+.+.+++. .+|+||||++.+.. |++ |
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g 228 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYG 228 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence 35678999999999999999999999999999999999966666655543 25799999998876 554 7
Q ss_pred hhh-ccCChhHHH
Q 021380 271 RHI-STGKPPDVA 282 (313)
Q Consensus 271 r~v-~~G~~~e~~ 282 (313)
+++ ..|.+.++.
T Consensus 229 ~i~~~~g~~~~~~ 241 (530)
T PRK15064 229 ELRVYPGNYDEYM 241 (530)
T ss_pred EEEEecCCHHHHH
Confidence 773 678777654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=276.52 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=151.2
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
+.++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..++
T Consensus 309 ~~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ig 378 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLG 378 (638)
T ss_pred CCceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEE
Confidence 455899999999998876 9999999999999999999999999999999999999 99999998742 3589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|++|+.........++.+++.. .........+.++|+.++.. .++++..|||||||||+||++++.++.+|
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL 452 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLAR------LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452 (638)
T ss_pred EecCcchhhCCccchHHHHHHH------hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999742212222344443321 11122345677888888853 46788899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e~~~ 283 (313)
++|+|+..||....+.+.+++. .+|+||||++++.. |++ |+++ ..|+..+...
T Consensus 453 lLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 453 LLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999955555554432 35799999999876 444 7776 6788777643
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-32 Score=245.32 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=154.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCceeeeCCCCC--
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~i~~~~~~~-- 148 (313)
+.+.++++++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 4689999999998876 9999999999999999999999999999999999997 6 799999998642
Q ss_pred --------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC------CCccCCCCCccCC
Q 021380 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 --------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~LSgGek 214 (313)
.+.++|++|++.. + .+|+.+|+.+.....+.. ....+.+.++++.++.. .+.++..||+||+
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~-~--~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNP-F--SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred cccchHhhhhceEEEecCCcc-c--cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 2358999999653 3 279999998765443221 12234567777777642 2345679999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH---HH--H----------hhhh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L----------KRHI 273 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~---rv--i----------gr~v 273 (313)
||++||++++.+++++++|+|+..||. .+++.+.++.. .+|++|||++++.. |+ + |+++
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999 44444444432 24799999998765 32 2 5777
Q ss_pred ccCChhHHHH
Q 021380 274 STGKPPDVAK 283 (313)
Q Consensus 274 ~~G~~~e~~~ 283 (313)
+.|+.+++..
T Consensus 236 ~~g~~~~~~~ 245 (261)
T PRK14263 236 EMGPTAQIFQ 245 (261)
T ss_pred EeCCHHHHHh
Confidence 7787777643
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-32 Score=236.10 Aligned_cols=175 Identities=11% Similarity=0.047 Sum_probs=139.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----CeE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVA 152 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----~~i 152 (313)
||+++|+++.|++.. +++ +||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.. ..+
T Consensus 1 ~l~~~~l~~~~~~~~----l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECCcE----EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 488999999997654 555 999999999999999999999999999999999 99999999986532 347
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
+|++|+...++ .+|+.+|+.+....++ ..+.+.++++.++. ..++++..||+||+||++++++++.+++++
T Consensus 73 ~~~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 73 TYIGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred EeccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 88988753333 4799999987654332 23456677777763 346677899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhh----cC---eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMF----DE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~----~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||....+.+.+++ +. +|++|||.+.+..
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 999999999985444444332 22 4799999987643
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-32 Score=240.41 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=153.5
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------------CC
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP 149 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------------~~ 149 (313)
|+.+.+|+. +| +++|.++..-++||-|+||||||||+|+|+|+++ |+.|.|.++|.. ..
T Consensus 5 ~~~~~lG~~-----~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNF-----AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCce-----EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 455666654 33 6899998878999999999999999999999999 999999999853 24
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+++||+|||...++ ++||+.|+.|+.... +...+..+...++ ...++++.+|||||||||+|++|+...+
T Consensus 76 RriGYVFQDARLFp--H~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P 147 (352)
T COG4148 76 RRIGYVFQDARLFP--HYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred heeeeEeecccccc--ceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCC
Confidence 67999999965444 699999999875432 3455677777777 4567888899999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++|++|+|+.-||+ +++..++.+.++ ++||||.++++.+ +++ |++.+.|..+++...
T Consensus 148 ~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 148 ELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred CeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999999999 666666666665 4699999999988 665 899999998887543
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=244.20 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=137.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
+.++++++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. +...
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~~~~ 91 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----LLGL 91 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----hhcc
Confidence 78899999999887 9999999999999999999999999999999999999 99999999886421 1111
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
. ..+ .+.+|+.+|+.+....++.......+++.++++.++. ..++.+..||||||||++||++++.+++++++|+|
T Consensus 92 ~-~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 92 G-GGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred c-ccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 112 2347999999876554432222223345667777663 34667789999999999999999999999999999
Q ss_pred ccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 236 YLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 236 ~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
+..||.. +++.+.++... +|++|||++++..
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999984 45555554332 5799999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-33 Score=246.18 Aligned_cols=194 Identities=14% Similarity=0.128 Sum_probs=144.8
Q ss_pred EEEccceeEcccc--ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~--~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++. . +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGDGPP----VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCCCcc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHH
Confidence 4689999999764 4 8999999999999999999999999999999999999 9999999988542
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH-----HHHHHHHHhh----cCCCccCCCCCccCCCcch
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR----NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~----~~~~~~~~~LSgGekqRv~ 218 (313)
.+.++|++|+... +. .|+.+|+.+....+ ....... .+.++++.+. ...+.++..||+||+||++
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 148 (234)
T cd03251 74 LRRQIGLVSQDVFL-FN--DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIA 148 (234)
T ss_pred HHhhEEEeCCCCee-cc--ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHH
Confidence 2358999999643 32 58999886642211 0000000 1223333331 1234567799999999999
Q ss_pred hhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||++++.+++++++|+|+..||... .+.|.++.+. +|++|||++++.. +++ |+++..|+++++..
T Consensus 149 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999944 4444444322 4799999998865 443 77777777766643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=248.70 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=153.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~~---- 148 (313)
.++|+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 43 ~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred CceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34799999999998766 999999999999999999999999999999999998410 14899999988542
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcC------------CCC-CccHHHHHHHHHHhhc------CCC
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRN------QGS 203 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~------~~~ 203 (313)
.+.++|++|+... +. .|+.+|+.+.....+ ... ....+.+.++++.++. ..+
T Consensus 119 ~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 195 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD 195 (305)
T ss_pred ccHHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc
Confidence 2358999999643 32 599999987643211 110 1123446667777653 235
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHHHH---HH-H----
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAMQ---RV-L---- 269 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~~~---rv-i---- 269 (313)
.++.+|||||+||++||++++.++++|++|+|+..||.. +++.|.++.+. +|++|||++.+.. |+ +
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 667899999999999999999999999999999999994 34444444332 5799999999766 53 2
Q ss_pred hhhhccCChhHHH
Q 021380 270 KRHISTGKPPDVA 282 (313)
Q Consensus 270 gr~v~~G~~~e~~ 282 (313)
|+++..|++.++.
T Consensus 276 G~i~~~g~~~~~~ 288 (305)
T PRK14264 276 GELVEYDDTDKIF 288 (305)
T ss_pred CEEEEeCCHHHHH
Confidence 7888888877664
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-32 Score=254.98 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=152.3
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++.|++++++|.|++.. ++++|||+|.+|||.||+|.||||||||+++|.|+++ |++|+|.++|+...
T Consensus 2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 45799999999999887 9999999999999999999999999999999999999 99999999997521
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhc---CCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la 220 (313)
.-||+|+|+....+ .+||.||+.++.... ........+++.++.+.++ ...+.++.+||-||||||.|.
T Consensus 75 dA~~~GIGMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHHHcCCcEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 24899999944333 599999998875432 1122334556777778887 456778899999999999999
Q ss_pred hhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
.+|..++++|++|+|+..|-+ ++++.++.+... +|||||-++++.+
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 999999999999999999998 455555555543 5799999999988
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=241.90 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=141.9
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++|+++.|++ .. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 3 IEFENVNFSYDEKKP----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred EEEEEEEEecCCCCc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 789999999974 34 9999999999999999999999999999999999999 9999999998542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh-------------cCCCccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.... .....+.+.++.++ ...+..+.+|||||+|
T Consensus 76 ~~~i~~~~q~~~~-~~--~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 76 RSMIGVVLQDTFL-FS--GTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred hhhEEEecCCchh-hh--hHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 2458999999643 32 4888887654211 11222333222221 1123456799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|++||++++.+++++++|+|+..||.. +.+.+.++.. .+|++|||++++.. +++ |+++..|+.+++.
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999984 4444444432 25799999998754 333 7777767665553
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=294.75 Aligned_cols=201 Identities=16% Similarity=0.191 Sum_probs=166.9
Q ss_pred CCeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
...|+++||+|.|+ ++. +|+|+||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred CceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchH
Confidence 35799999999995 344 9999999999999999999999999999999999999 9999999998653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
++.+||++|++..++ .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||++||+|+
T Consensus 999 ~~~r~~IG~~pQ~~~L~~--~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFH--HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred HHHhhcEEEEecCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 245899999965333 58999999988776665443344567888888884 34677889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.+++++++|||+..||+ .+++.|+++.+. +|++|||++++.. |++ |+++..|++.++...
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999 455555555332 4799999999876 554 888889988887654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-32 Score=239.95 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=132.9
Q ss_pred EEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSYPNQEIP----ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHH
Confidence 789999999975 34 8999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CC-----------ccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS-----------VYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~-----------~~~~~LSgGek 214 (313)
.+.++|++|+... +. .|+.+|+.+... ......+.++++.++.. .+ ..+.+|||||+
T Consensus 76 ~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 76 LRRNIGYVPQDVTL-FY--GTLRDNITLGAP------LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HHhhEEEeCCCCcc-cc--chHHHHhhcCCC------CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 2358999999643 32 588888765311 11223445555555421 11 13469999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTA 264 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~ 264 (313)
||++||++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++..
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999994 4444444433 257999999875
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-32 Score=242.75 Aligned_cols=195 Identities=16% Similarity=0.095 Sum_probs=147.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCCC----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~~---- 149 (313)
++|+++||++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+ ++ |++|+|.++|.+..
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 4799999999998766 99999999999999999999999999999999998 56 99999999885421
Q ss_pred ----C-eEEEEeccCCCCCcccCCcccCHHHHHHhc----CCCC-C--ccHHHHHHHHHHhhcC---CCccCC-CCCccC
Q 021380 150 ----D-VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPW-T--FNPLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (313)
Q Consensus 150 ----~-~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----~~~~-~--~~~~~~~~~l~~l~~~---~~~~~~-~LSgGe 213 (313)
+ .++|++|++..+. .+++.+++.+..... +... . ...+++.++++.++.. .+..+. .|||||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIP--GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hhhheeeEEEEeccccccc--cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 1 3678899854332 467888876543211 1111 0 1123456777877743 355666 599999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH----HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~ 278 (313)
+||++||++++.+++++++|+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |++++.|++
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 99999999999999999999999999994 4444444432 24799999997753 333 788888877
Q ss_pred h
Q 021380 279 P 279 (313)
Q Consensus 279 ~ 279 (313)
+
T Consensus 237 ~ 237 (252)
T CHL00131 237 E 237 (252)
T ss_pred h
Confidence 6
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=265.93 Aligned_cols=193 Identities=16% Similarity=0.024 Sum_probs=149.8
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
||+++||++.|+ ++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~v 73 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKVGYL 73 (552)
T ss_pred EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEE
Confidence 799999999997 555 9999999999999999999999999999999999999 99999998752 459999
Q ss_pred eccCCCCCcccCCcccCHHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHHhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNLR 199 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~l~ 199 (313)
+|++..++ .+|+.+|+.+.... ...+... ...++.++++.++
T Consensus 74 ~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 74 PQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred eccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99964332 48999998864211 0111110 0123445566665
Q ss_pred c-CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH--
Q 021380 200 N-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL-- 269 (313)
Q Consensus 200 ~-~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi-- 269 (313)
. ..+.++.+||||||||++||++++.++++|++|+|+..||....+.+.+++. .+|+||||++.+.. +++
T Consensus 152 l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 152 CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence 4 2466788999999999999999999999999999999999955555554433 36799999998876 444
Q ss_pred --hhhh-ccCChhHH
Q 021380 270 --KRHI-STGKPPDV 281 (313)
Q Consensus 270 --gr~v-~~G~~~e~ 281 (313)
|+++ ..|...++
T Consensus 232 ~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 232 DRGRGIPWEGNYSSW 246 (552)
T ss_pred ECCEEEEecCCHHHH
Confidence 7755 56776654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-32 Score=271.68 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=145.0
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
+..+|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++.. -.++
T Consensus 316 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~i~ 385 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LEVA 385 (635)
T ss_pred CCceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cEEE
Confidence 345899999999998876 9999999999999999999999999999999999999 99999998432 2589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|++|+...++ +.+|+.+++.+....... ......+.++++.++.. .++++.+|||||||||+||++++.++.+|
T Consensus 386 y~~q~~~~l~-~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL 462 (635)
T PRK11147 386 YFDQHRAELD-PEKTVMDNLAEGKQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL 462 (635)
T ss_pred EEeCcccccC-CCCCHHHHHHhhcccccc--cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999743233 358999998764321110 11134567788887742 46788899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+..||....+.+.+++. .+|+||||.+++..
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDN 502 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 9999999999966666665543 25799999998865
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=242.70 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=149.2
Q ss_pred eEEEccceeEcccc----------------ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCce
Q 021380 77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 77 ~l~v~~ls~~y~~~----------------~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (313)
-|+++||+|.|... .....+|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~ 80 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK 80 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence 37788888888542 123448999999999999999999999999999999999999 99999
Q ss_pred eeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcch
Q 021380 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 141 i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~ 218 (313)
|.++|. +++++|..... +.+|+.+|+.+.....+.........+..+++.++ ...+.++.+||+||+||++
T Consensus 81 I~~~g~-----~~~~~~~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 81 VDRNGE-----VSVIAISAGLS--GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred EEECCE-----EeEEecccCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 999874 45666664322 34799999876544433322222223445566555 3345677899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
||++++.+++++++|+|+..||.. +++.+.++.. .+|++|||++++.. +++ |+++..|+.+++...
T Consensus 154 Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 999999999999999999999984 4444444432 25799999998765 444 888888988777654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=245.60 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=147.4
Q ss_pred EEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++||++.|. +.. +|+|+||+|++|+++||+|+||||||||+++|+|++ +++|+|.++|.+.
T Consensus 3 i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHH
Confidence 78999999994 344 899999999999999999999999999999999999 5689999999652
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCC-----------CCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAP-----------SFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~-----------~LSgGek 214 (313)
.+.++|++|++..+ . .|+++|+... + ....+.+.+.++.++.. .+..+. .||+||+
T Consensus 75 lr~~i~~v~q~~~lf-~--~tv~~nl~~~----~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 75 WRKAFGVIPQKVFIF-S--GTFRKNLDPY----G---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred HhhhEEEECCCcccc-h--hhHHHHhhhc----c---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 24699999996543 2 4899988532 1 12234566667766632 222232 4999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+|+..||.... +.|.+... .+|+|||+++.+.. |++ |++++.|.++++.
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHh
Confidence 999999999999999999999999999444 44443332 24799999998866 554 8999999999986
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 225 ~ 225 (275)
T cd03289 225 N 225 (275)
T ss_pred h
Confidence 6
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-32 Score=240.13 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=137.9
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC---CeEEEEeccCCCCCcccCCcccCH
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---~~i~~v~q~~~~~~~~~ltv~e~l 173 (313)
|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.. ...+|++|+...++ .+|+.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~--~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLP--WLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCC--CCCHHHHH
Confidence 578999999999999999999999999999999999 99999999986432 23589999865333 47999999
Q ss_pred HHHHHh--cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHH
Q 021380 174 KEAHAR--RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWK 245 (313)
Q Consensus 174 ~~~~~~--~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~ 245 (313)
.+.... .+.......+.+.++++.++. ..++++.+||||||||++||++++.+++++++|+|+..||. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 875321 111112223456778888774 34567789999999999999999999999999999999999 3444
Q ss_pred HHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhH
Q 021380 246 DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 280 (313)
Q Consensus 246 ~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e 280 (313)
.|.++.+ .+|++|||++++.. |++ |+++..|...+
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 4544432 24799999998765 444 77777775443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=266.91 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=148.5
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|+ . +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 4799999999763 3 8999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccC--CCCCcccCCcccCHHHHHHhc--------CC-CCCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 149 --PDVATVLPMDG--FHLYLSQLDAMEDPKEAHARR--------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 --~~~i~~v~q~~--~~~~~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
.+.++|++|+. ..++ +.+|+.+|+.+....+ +. ........+.++++.++.. .++++.+||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 13589999983 2222 3589999987643211 11 1111234567888888853 46778899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
|||||+||++++.++++|++|||+..||.... +.|.++.+ .+|++|||++++.. |++ |+++..+..
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999444 44443322 25799999998876 444 676665543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-32 Score=243.56 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=142.6
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. ...+|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46899999997421 1128999999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH-----HHHHHHHHhh----cCCCccCCCCCccCCCcchhh
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR----NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~----~~~~~~~~~LSgGekqRv~la 220 (313)
+.++|++|++.. +. .|+.+|+.+...... ...... .+.+++..+. ...+..+.+|||||+||++||
T Consensus 77 ~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 151 (238)
T cd03249 77 SQIGLVSQEPVL-FD--GTIAENIRYGKPDAT--DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA 151 (238)
T ss_pred hhEEEECCchhh-hh--hhHHHHhhccCCCCC--HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence 359999999643 32 588888865421110 000000 0112222221 123456679999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++++.+++++++|+|+..||.. +++.|.++.. .+|++|||++++.. +++ |++++.|+.+++..
T Consensus 152 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 152 RALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999984 4444444432 24799999998754 443 78777777666543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=233.52 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=134.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 6 EIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred eEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHHH
Confidence 589999999997521 128999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+.++|++|++. ++. .|+.+|+.+.. ......+.+.++ .+.++..|||||+||++||++++.+++
T Consensus 81 ~~~i~~v~q~~~-~~~--~tv~~~l~~~~-------~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 81 RSSLTIIPQDPT-LFS--GTIRSNLDPFD-------EYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred HhhEEEEecCCc-ccC--ccHHHHhcccC-------CCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 246999999964 332 58998885421 112233444443 356778999999999999999999999
Q ss_pred EEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||.... +.|.++.. .+|++|||++++..
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 9999999999999444 44444432 24799999998754
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=237.94 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=134.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 78999999997421 129999999999999999999999999999999999999 9999999998542 3
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccCCCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGekqR 216 (313)
+.++|++|++. ++. .|+.+|+.+.. ......+.+.++.++. ..+.++..||+||+||
T Consensus 78 ~~i~~~~q~~~-l~~--~tv~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 147 (221)
T cd03244 78 SRISIIPQDPV-LFS--GTIRSNLDPFG-------EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQL 147 (221)
T ss_pred hhEEEECCCCc-ccc--chHHHHhCcCC-------CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHH
Confidence 45899999965 332 58888875321 1122334444444431 1134677999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++||++++.+++++++|+|+..||.... +.|.++.. .+|++|||++++..
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 9999999999999999999999999444 44444322 24799999998765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=238.64 Aligned_cols=195 Identities=15% Similarity=0.028 Sum_probs=141.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCCC-----
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~~----- 149 (313)
||+++||++.|+++. +|+++||+|++|++++|+|+||||||||+++|+|++ + |++|+|.++|.+..
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 488999999998766 999999999999999999999999999999999994 6 99999999986531
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHh---cCCCCCc----cHHHHHHHHHHhhcC---CCccCC-CCCccCC
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF----NPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 214 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~---~~~~~~~----~~~~~~~~l~~l~~~---~~~~~~-~LSgGek 214 (313)
..++|++|+...++ .++..+++...... ....... ..+.+.+.++.++.. .++.+. .|||||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHhhcceEEEecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHH
Confidence 34889999864332 23433333221110 0000001 123445666666642 334454 7999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHH----HHhhc---CeEEEEcChHHHHH----HHH----hhhhccCChh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV----SSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l----~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~~ 279 (313)
||++||++++.+++++++|+|+..||....+.+ .++.+ .+|++|||++.+.. +++ |+++..|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999444433 33332 24799999988764 232 7777778766
Q ss_pred H
Q 021380 280 D 280 (313)
Q Consensus 280 e 280 (313)
.
T Consensus 232 ~ 232 (248)
T PRK09580 232 L 232 (248)
T ss_pred H
Confidence 3
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=264.17 Aligned_cols=197 Identities=15% Similarity=0.059 Sum_probs=152.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++|+++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|
T Consensus 320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~ 389 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY 389 (552)
T ss_pred CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE
Confidence 45899999999998776 9999999999999999999999999999999999999 99999998542 25899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+...++ +.+|+.+++.+.....+... ......++++.++.. .++++.+||||||||++||++++.++++++
T Consensus 390 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 390 VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 999853222 35899999887543222211 123355778888753 367788999999999999999999999999
Q ss_pred EcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHH---HHH-----hhhh-ccCChhHHHHH
Q 021380 232 VDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~---rvi-----gr~v-~~G~~~e~~~~ 284 (313)
+|+|+..||....+.+.+++ ..+|+||||++++.. |++ |+++ ..|...+....
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999999995544444443 336799999998876 443 2443 34665544433
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=236.08 Aligned_cols=188 Identities=14% Similarity=0.070 Sum_probs=140.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~ 151 (313)
++.++||++.|++......+|+|+||+|++|++++|+||||||||||+++|+|+++..-|++|+|.++|.+. .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 578999999996531012399999999999999999999999999999999999841114899999988643 356
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCC---CCccHHHHHH-HHHHhhc--CCCccCCCCCccCCCcchhhhhccc
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~-~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
++|++|+...++ .+|+.+|+.+........ .......+.+ .++.++. ..++.+..||+||+||+++|++++.
T Consensus 83 i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 83 VAYVRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred EEEeCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 899999964433 479999998765433211 1111123334 6777663 2456778999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcCh-HHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL-DTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~-~~~~~ 266 (313)
+++++++|+|+..||. .+++.+.++.+ .+|++||+. +++..
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 9999999999999999 44444444432 247999998 45554
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=258.37 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=150.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++++++||++.|++.. ...+|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|... ++
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~i 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----LI 90 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----eE
Confidence 4799999999997631 1238999999999999999999999999999999999999 9999999988542 22
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
.+... + .+.+|+.+|+.+.....+.......+.+.++++.++. ..++++..||||||||++||++++.++++|++|
T Consensus 91 ~~~~~-l-~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 91 AISSG-L-NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred Eeccc-c-CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 22222 1 2247999998875443333222223345567777774 346778899999999999999999999999999
Q ss_pred CcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 234 GNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+|+..||.. +++.|.++.+ .+|++|||++++.. +++ |+++..|.++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999994 4444444432 24799999998866 444 888888988877643
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-32 Score=230.89 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=122.3
Q ss_pred EEEccceeEcccc--ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~--~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~~~~~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQEQQ----VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCCCcc----ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHH
Confidence 4689999999764 4 8999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+.++|++|++.. +. .|+.+|+ +..||+||+||++||++++.+++
T Consensus 74 ~~~i~~~~q~~~~-~~--~tv~~~i--------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 74 SSLISVLNQRPYL-FD--TTLRNNL--------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred HhhEEEEccCCee-ec--ccHHHhh--------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 2458999998542 22 4666654 66999999999999999999999
Q ss_pred EEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH
Q 021380 229 VVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 229 ~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++++|+|+..||.... +.|.++.. .+|++|||.+++..
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 9999999999998444 44444322 24799999998753
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=238.80 Aligned_cols=184 Identities=14% Similarity=0.088 Sum_probs=138.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
-++|+++|+++.|++.. ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred CceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHH
Confidence 34799999999997521 1128999999999999999999999999999999999999 9999999998652
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC---CccHHHHHHHHHHh--hc--CCCccCCCCCccCCCcchh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNL--RN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~l~~l--~~--~~~~~~~~LSgGekqRv~l 219 (313)
.+.++|++|+... +. .|+.+|+.+......... ......+.++++.+ +. ..+.++.+|||||+||++|
T Consensus 85 ~~~~~i~~~~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~l 161 (226)
T cd03248 85 YLHSKVSLVGQEPVL-FA--RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAI 161 (226)
T ss_pred HHHhhEEEEecccHH-Hh--hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHH
Confidence 2458999999643 32 588888865422110000 00001134556666 32 2456678999999999999
Q ss_pred hhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~ 265 (313)
|++++.+++++++|+|+..||....+ .+.++.+ .+|++|||++++.
T Consensus 162 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 162 ARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 99999999999999999999994444 4444333 2479999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-32 Score=265.84 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=149.3
Q ss_pred CeEEEccceeEcc---ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCCCCC---
Q 021380 76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP--- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~---~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~~~~--- 148 (313)
++|+++|+++.|+ +.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 256 ~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIR 328 (500)
T ss_pred ceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCC
Confidence 4799999999993 344 8999999999999999999999999999999999997 7 799999988542
Q ss_pred ------CCeEEEEeccCC--CCCcccCCcccCHHHHHH--hcC---CCCCccHHHHHHHHHHhhcC---CCccCCCCCcc
Q 021380 149 ------PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (313)
Q Consensus 149 ------~~~i~~v~q~~~--~~~~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgG 212 (313)
.+.++|++|+.. .++ +.+|+.+|+.+... ... .........+.++++.++.. .++++.+||||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 407 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGG 407 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHH
Confidence 235899999942 122 35899999876431 111 11112234577888888853 46778899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
||||++||++++.++++|++|||+..||....+ .+.++.+. +|++|||++++.. |++ |+++..++
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999994443 34444332 5799999999876 443 66665443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=263.76 Aligned_cols=197 Identities=14% Similarity=0.064 Sum_probs=152.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++||++.|+++. +|+||||+|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|
T Consensus 322 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~ 391 (556)
T PRK11819 322 DKVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY 391 (556)
T ss_pred CeEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE
Confidence 35899999999998876 9999999999999999999999999999999999999 99999998542 25899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+...++ +.+|+.+|+.+.....+... .......+++.++.. .++++.+||||||||++||++++.++++|+
T Consensus 392 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 392 VDQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred EeCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999852222 35899999887543222211 123345678888753 367888999999999999999999999999
Q ss_pred EcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHH---HHH-----hhhh-ccCChhHHHHH
Q 021380 232 VDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~---rvi-----gr~v-~~G~~~e~~~~ 284 (313)
+|+|+..||....+.+.+++ ..+|+||||++++.. |++ |+++ ..|...+...+
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999995444444433 336799999998876 443 2333 35666555443
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=223.01 Aligned_cols=178 Identities=14% Similarity=0.122 Sum_probs=147.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.++++++...-++.. +|+++||.+.+||+++|+||+|||||||+|+++.++. |++|++.|.|++..
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 466777766666666 9999999999999999999999999999999999999 99999999998742
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhccc
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~ 225 (313)
..++|+-|.+..+. -||++|+-|+...+. ...+...+..+|++++.. .++.+.+|||||+||++|++.+..
T Consensus 76 Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~ 150 (223)
T COG4619 76 RQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF 150 (223)
T ss_pred HHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc
Confidence 35889999875444 499999999766543 344778888999999843 567888999999999999999999
Q ss_pred CccEEEEcCcccccChhhHHHHHH----hhc-C---eEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWKDVSS----MFD-E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~l~~----l~~-~---~i~vtHd~~~~~~ 266 (313)
.+.+|++|+++.-|||...+.+.+ ++. + .++||||.+++.+
T Consensus 151 ~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 151 MPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred CCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 999999999999999954444443 332 1 4699999999765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=241.79 Aligned_cols=211 Identities=15% Similarity=0.141 Sum_probs=171.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCceeeeCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK---- 147 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~--~p~~G~i~~~~~~---- 147 (313)
.+++|+++|+++.|+.......++++|||+|.+||.+||+|.+|||||-..+.|+|+++.. ..-+|+|.++|.+
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3578999999999974334445999999999999999999999999999999999999621 1237899999976
Q ss_pred --------CCCeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcC-----CCccCCCCCccC
Q 021380 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGV 213 (313)
Q Consensus 148 --------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~LSgGe 213 (313)
+..+|+++||++..-.++-.|+...+...... ++...+...+++.++|+.++.. .+.++++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 23569999999987777777887777776543 4566666778889999999832 356888999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||||.||.|++..+++||.|+|+--||- ++++.|+++..+ .+|||||+..+.+ ||. |++++.|..
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 9999999999999999999999999998 455555555443 4699999999987 655 999999998
Q ss_pred hHHHHH
Q 021380 279 PDVAKW 284 (313)
Q Consensus 279 ~e~~~~ 284 (313)
+.+...
T Consensus 243 ~~lF~~ 248 (534)
T COG4172 243 ETLFAA 248 (534)
T ss_pred HHHhhC
Confidence 887653
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=231.77 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=125.6
Q ss_pred eEEEccceeEccc------cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCC
Q 021380 77 VVEARCMDEVYDA------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~------~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~ 148 (313)
.|+++||++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.+.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~----~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~ 75 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ----LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPL 75 (194)
T ss_pred EEEEEeeEEEEecCCCccccc----ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeC
Confidence 4889999999975 34 999999999999999999999999999999999999 8 9999999998653
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|++|+...++ .+|+.+|+.+.... ..|||||+||++||+++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~--~~t~~~~i~~~~~~---------------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 76 DKRSFRKIIGYVPQDDILHP--TLTVRETLMFAAKL---------------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred chHhhhheEEEccCcccCCC--CCcHHHHHHHHHHh---------------------------ccCCHHHHHHHHHHHHH
Confidence 346899999864333 47888887653211 08999999999999999
Q ss_pred ccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChH-HHH
Q 021380 224 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD-TAM 265 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~-~~~ 265 (313)
+.+++++++|+|+..||.. +.+.|.++.+ .+|++|||++ ++.
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHH
Confidence 9999999999999999994 3444444432 2479999996 444
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=272.55 Aligned_cols=192 Identities=16% Similarity=0.150 Sum_probs=153.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 599999999995321 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgGekq 215 (313)
++.++|++|+++.+. -|++||+.++ .+ .+.+++.++++..+. +.+..+ ..|||||||
T Consensus 526 r~~i~~v~Q~~~lf~---gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 526 RRQLGVVLQNGRLMS---GSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred HhccEEEccCCccCc---ccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 346999999976543 4999998764 12 234555566655441 223322 479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.+++++++||++.-||.+ +.+.+.++-...|+|||+++.+.. |++ |++++.|+.+++.+
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999984 444444443346899999988876 655 99999999888754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=267.25 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=154.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||++.|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 499999999996521 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
.+.++|++|+++.+. -|+++|+.++ .+...+.+++.++++..+ .+.+..+ ..|||||||
T Consensus 416 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 RNQVALVSQNVHLFN---DTIANNIAYA-----RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HhhceEEccCceeec---chHHHHHhcC-----CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 246999999976543 5999998764 122234455555555543 2233333 369999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||++..+++++++||++.-||+ .+.+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999 34445555432 35799999988766 655 89999999888765
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 568 ~ 568 (582)
T PRK11176 568 Q 568 (582)
T ss_pred C
Confidence 3
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=224.27 Aligned_cols=146 Identities=13% Similarity=0.020 Sum_probs=123.0
Q ss_pred EEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
|+++|+++.|++ +. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++. +.++|++
T Consensus 1 i~~~~~~~~~~~~~~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~ 70 (166)
T cd03223 1 IELENLSLATPDGRV----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLFLP 70 (166)
T ss_pred CEEEEEEEEcCCCCe----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEEEC
Confidence 468999999963 44 9999999999999999999999999999999999999 99999999874 4699999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
|+... + ..|+.+|+.+. ...+|||||+||+++|++++.+++++++|+|+
T Consensus 71 q~~~~-~--~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99642 3 36888876532 35799999999999999999999999999999
Q ss_pred cccChhhHHHHHHhh----cCeEEEEcChHHH
Q 021380 237 LFLDGGVWKDVSSMF----DEKWFIEVDLDTA 264 (313)
Q Consensus 237 llLDE~~~~~l~~l~----~~~i~vtHd~~~~ 264 (313)
..||....+.+.+++ ..+|++|||.+..
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChhHH
Confidence 999995555444443 2357999998754
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=225.63 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=122.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------CC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 150 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~~ 150 (313)
|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 46899999998765 9999999999999999999999999999999999999 9999999988642 24
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
.++|++|+...++ .+|+.+|+. |||||+||++||++++.+++++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~~~----------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 74 RIGYLPEEPSLYE--NLTVRENLK----------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred cEEEEecCCcccc--CCcHHHHhh----------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 5899999964332 357776642 9999999999999999999999
Q ss_pred EEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
++|+|+..||. .+.+.|.++.+. +|++|||.+++..
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999999 444555554432 4799999988764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=241.12 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=145.0
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------C
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------D 150 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~ 150 (313)
+++||++. . +|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.++|.+.. +
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~----~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP----GSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC----CCeEEEECCEecCcCCHHHHhh
Confidence 57788875 2 7999999999999999999999999999999999984 4899999986531 3
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhccc---
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL--- 225 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~--- 225 (313)
.++|++|++..++ .+|+.+|+.+.... ........+.+.++++.++.. .++++..|||||+||++||++++.
T Consensus 70 ~i~~v~q~~~~~~--~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 70 HRAYLSQQQTPPF--AMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred heEEecccCccCC--CccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 4899999854333 37999998765221 111222244667888888743 467788999999999999999986
Q ss_pred ----CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 226 ----QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 226 ----~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+++++++|+|+..||.. +.+.|.++.+ .+|++|||++++.. +++ |+++..|...++.
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 67999999999999994 3444444432 25799999998766 444 8888888877653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=221.46 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=161.9
Q ss_pred CCeEEEccceeEccccc-----cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--
Q 021380 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~-----~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-- 147 (313)
|+.|+|+|++|.|..+. ....+++.|||++++|+.+||||.||||||||.|+|+|+++ |++|+|.++|..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 56799999999996432 12448899999999999999999999999999999999999 999999999975
Q ss_pred ------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhc-CCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcc
Q 021380 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 148 ------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv 217 (313)
+.+.+-++|||+...+++.+.+-+.+..+.... ........+++.+.|..+|. ..+.++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 345689999998766666666666555554432 22333345567788888884 34567889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++|+|++..+.+++.|+.+..||-. ++..+.++.++ -|+|+.++..+.. .++ |.++++|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 9988888888888888888888873 44444444443 2699999998876 444 9999999999986
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 239 a~ 240 (267)
T COG4167 239 AS 240 (267)
T ss_pred cC
Confidence 54
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=272.10 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=153.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 477 ~I~~~~vsf~y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLE--PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCC--CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 599999999997521 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGekq 215 (313)
++.++|++|+++.+. -|++||+.++ .+ ..+.+++.+.++..+ .+.+.. ...|||||||
T Consensus 552 r~~i~~v~Q~~~lf~---gTi~eNi~l~-----~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE---GTVRDNLTLW-----DP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh---ccHHHHhhCC-----CC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 356999999976543 5999998753 11 234455555555544 122332 3479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhcCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||+++.+++++++||++.-||++.- +.+.+.-..+|+|||+++.+.. |++ |++++.|+.+++.+
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999444 4444422235799999998876 655 99999999888765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=263.05 Aligned_cols=195 Identities=15% Similarity=0.170 Sum_probs=154.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||++.|+.++ ...+|+|+||+|++|+++||+||||+||||++++|..++. |++|+|.+||.+.+
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence 699999999998875 4569999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHH---------HHHhhcCCCccC----CCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~----~~LSgGekq 215 (313)
+.||+|.|++..+. -|+.|||.++.. ..+.+.+... +..+-.+-+..+ .+|||||||
T Consensus 541 r~~Ig~V~QEPvLFs---~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ 611 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFS---GSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ 611 (716)
T ss_pred HHHeeeeeccceeec---ccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence 56999999986544 599999987643 2223333322 233333333333 399999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++||+||-+.-||-+. .+.+.+..+ .+|+|.|-+..+.. +|+ |++++.|+-+|+.+
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999733 333333333 25799999999988 544 99999998888765
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 692 ~ 692 (716)
T KOG0058|consen 692 K 692 (716)
T ss_pred C
Confidence 4
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-32 Score=240.03 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=142.5
Q ss_pred EEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 78 l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
|+++|+++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 46899999996 454 8999999999999999999999999999999999999 9999999998542
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH---------HHHHhhc----CCCccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRN----QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~l~~----~~~~~~~~LSgGekq 215 (313)
.+.++|++|+... +. .|+.+|+.+.... . ....+.. .+..+.. ..+.++..||+||+|
T Consensus 74 ~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~--~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 74 RRAIGVVPQDTVL-FN--DTIGYNIRYGRPD--A----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred HhhEEEECCCChh-hc--chHHHHHhhcCCC--C----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 2358999999643 32 5899988664211 1 1111222 2222211 123456799999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.+++++++|+|+..||.... +.|.++.+ .+|++||+.+.+.. |++ |+++..|...++..
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999444 44444433 25799999998865 444 77777777666543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=225.16 Aligned_cols=150 Identities=20% Similarity=0.226 Sum_probs=123.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence 479999999998 6899999999999999999999999999999999999 9999999998542
Q ss_pred --CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc
Q 021380 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 149 --~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.+.++|++|+.. ....+.+|+.+|+.+... ||+||+||++||++++.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHHHHHHHHHHcc
Confidence 235899999842 112224688887765311 99999999999999999
Q ss_pred CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+++++++|+|+..||.. +.+.+.++.+ .+|++|||++++..
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999994 4444444432 24799999987764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=252.92 Aligned_cols=192 Identities=14% Similarity=0.156 Sum_probs=156.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
++++|+++.|++.+ ++++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+|.+||.+. .
T Consensus 321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence 55669999998752 29999999999999999999999999999999999999 9999999999763 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--------CCCccCC----CCCccCCCcc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSVYAP----SFDHGVGDPV 217 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~----~LSgGekqRv 217 (313)
+.+++++|+++.+. -|++||+.++. + ....+.+.++++..+. +.+..+. .|||||+|||
T Consensus 395 k~i~~v~Q~p~lf~---gTireNi~l~~-----~-~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 395 KQISWVSQNPYLFA---GTIRENILLAR-----P-DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred hHeeeeCCCCcccc---ccHHHHhhccC-----C-cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 56999999987554 49999998752 2 2344556666666551 3344444 5999999999
Q ss_pred hhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
++|||+..+++++++|||+.-||- .+.+.|.++.+. +++|||++..+.. +|+ ||+++.|..+++.+.
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 999999999999999999999997 345555555543 5799999999888 555 999999999888554
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=228.89 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=124.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCceeeeCCCCC----CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP----PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~G~i~~~~~~~----~~ 150 (313)
.|+++|+++.|++......+|+++||++++|++++|+||||||||||+++|+|++ + |++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHHHhhh
Confidence 5899999999975110112899999999999999999999999999999999975 4 7999999998653 34
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
.++|++|++..++ .+|+.+|+.+.... . .|||||+||++||++++.+++++
T Consensus 80 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~----------------~-----------~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 80 STGYVEQQDVHSP--NLTVREALRFSALL----------------R-----------GLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred ceEEecccCcccc--CCcHHHHHHHHHHH----------------h-----------cCCHHHhHHHHHHHHHhcCCcEE
Confidence 6899999864333 47899888754210 0 89999999999999999999999
Q ss_pred EEcCcccccChh----hHHHHHHhhc---CeEEEEcChHH
Q 021380 231 IVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDT 263 (313)
Q Consensus 231 i~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~ 263 (313)
++|+|+..||.. +++.+.++.+ .+|++|||++.
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 999999999993 4444444432 24799999984
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=224.07 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=119.3
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++|+++.|++.. ..+++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 46899999997521 128999999999999999999999999999999999999 9999999998542 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
+.++|++|++.. +. .|+.+|+ |||||+||++||++++.++++
T Consensus 76 ~~i~~~~q~~~~-~~--~tv~~~l-----------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 76 DHVGYLPQDDEL-FS--GSIAENI-----------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred hheEEECCCCcc-cc--CcHHHHC-----------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 458999998642 22 3666654 999999999999999999999
Q ss_pred EEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 230 VIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 230 li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+++|+|+..||.. +.+.+.++.+ .+|++|||++.+.
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9999999999994 4444444433 2579999998763
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=225.38 Aligned_cols=148 Identities=21% Similarity=0.215 Sum_probs=122.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------- 148 (313)
|+++|+++.|+++. +|+++||++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 46899999998766 9999999999999999999999999999999999999 9999999988532
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
.+.++|++|++..++ .+|+.+|+.+. ||+||+||++||++++.++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~--------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 74 LRRRIGMVFQDFALFP--HLTVLENIALG--------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred HhhcEEEEecCCccCC--CCCHHHheeec--------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 245899999865332 36776665431 9999999999999999999
Q ss_pred cEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||.. +.+.+.++.+ .++++|||++++..
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999994 4444444433 24699999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=232.51 Aligned_cols=205 Identities=15% Similarity=0.069 Sum_probs=158.1
Q ss_pred CeEEEccceeEcccc-----------------ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC
Q 021380 76 PVVEARCMDEVYDAL-----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~-----------------~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~ 138 (313)
.++.++||+|.|.-. ...+.++.||||+|++|+++|++|+|||||||++|+|+|++. |++
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~ 78 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS 78 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence 467788888877311 112448899999999999999999999999999999999999 999
Q ss_pred ceeeeCCCCCCC-------eEEEEecc-CCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCC
Q 021380 139 ASSFDSQVKPPD-------VATVLPMD-GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS 208 (313)
Q Consensus 139 G~i~~~~~~~~~-------~i~~v~q~-~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~ 208 (313)
|.|.++|.++.+ .+++++-. ...++. +.+.+.+......|..|...-.++...+.+.++.. .+.++..
T Consensus 79 G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd--lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~ 156 (325)
T COG4586 79 GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD--LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK 156 (325)
T ss_pred CeEEecCcCcchhHHHHHHHHHHHhhhhheeeee--chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence 999999987543 24444332 222222 45666677677778777655556666676777654 6778889
Q ss_pred CCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHH----HhhcC----eEEEEcChHHHHH---HHH----hhhh
Q 021380 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFDE----KWFIEVDLDTAMQ---RVL----KRHI 273 (313)
Q Consensus 209 LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~----~l~~~----~i~vtHd~~~~~~---rvi----gr~v 273 (313)
||-|||+|+.||.++++++++|++|+|++.||-.....++ +...+ +++.||+++.+.+ |++ |+++
T Consensus 157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236 (325)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe
Confidence 9999999999999999999999999999999984444444 33322 5699999998887 665 9999
Q ss_pred ccCChhHHHHHH
Q 021380 274 STGKPPDVAKWR 285 (313)
Q Consensus 274 ~~G~~~e~~~~~ 285 (313)
.+|+..++.+++
T Consensus 237 ~dg~l~~l~~~f 248 (325)
T COG4586 237 FDGTLAQLQEQF 248 (325)
T ss_pred ecccHHHHHHHh
Confidence 999988887764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=262.45 Aligned_cols=196 Identities=14% Similarity=0.036 Sum_probs=147.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
|.||+++||++.|++.. +|+||||+|++|+++||+||||||||||||+|+|+++ |++|+|.+++.. .+++
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~ 70 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR 70 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence 45899999999998876 9999999999999999999999999999999999999 999999987632 3677
Q ss_pred EeccCCCCCcccCCcccCHH------------------------------HHHHh---c-CCCCCccHHHHHHHHHHhhc
Q 021380 155 LPMDGFHLYLSQLDAMEDPK------------------------------EAHAR---R-GAPWTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~------------------------------~~~~~---~-~~~~~~~~~~~~~~l~~l~~ 200 (313)
++|+.... ...++.+++. ..... . .........++.++++.++.
T Consensus 71 l~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 71 LQQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred eccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 77764211 1123333321 00000 0 00111123467788888886
Q ss_pred CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---- 269 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi---- 269 (313)
..++++.+|||||||||+||++++.++++|++|+|+..||....+.|.+++. .+|+||||.+++.. +++
T Consensus 149 ~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6678888999999999999999999999999999999999966555555543 35799999998876 554
Q ss_pred hhhhc-cCChhHHH
Q 021380 270 KRHIS-TGKPPDVA 282 (313)
Q Consensus 270 gr~v~-~G~~~e~~ 282 (313)
|+++. .|+..+..
T Consensus 229 G~i~~~~g~~~~~~ 242 (635)
T PRK11147 229 GKLVSYPGNYDQYL 242 (635)
T ss_pred CEEEEecCCHHHHH
Confidence 77664 57665543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=263.71 Aligned_cols=191 Identities=14% Similarity=0.144 Sum_probs=150.4
Q ss_pred eEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
-|+++||++.| ++.. +|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|.+.
T Consensus 349 ~i~~~~vsf~~~~~~~----vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPDGKT----LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHH
Confidence 49999999755 4444 999999999999999999999999999999999998 7799999999763
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGek 214 (313)
++.++|++|+++.+. -|++||+.++. + ..+.+++.++++..+ .+.+..+ ..||||||
T Consensus 421 lr~~i~~v~Q~~~LF~---~TI~eNI~~g~-----~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH---GTLRDNVLLGN-----P-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HHhheEEecCCCcCCC---cCHHHHhhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 346999999976543 59999998752 2 233445555554433 2334333 37999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||||++.+++++++|+++.-||.+ +.+.+.++.+ .+|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 9999999999999999999999999994 4444444432 35799999988876 555 8999999988876
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 572 ~~ 573 (588)
T PRK11174 572 QA 573 (588)
T ss_pred hc
Confidence 53
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=229.01 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=129.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
++.++||+|.|+.......+|+++||+|++|++++|+||||||||||+++|+|+++...|++|+|.++|.+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 578999999997542334499999999999999999999999999999999999861114799999988642 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
+.++|++|+...++ .+|+.+|+.+..... .+..+..||+||+||++||++++.++++
T Consensus 83 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 83 GEIIYVSEEDVHFP--TLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred ceEEEEecccccCC--CCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 45899999864433 479999987643210 4566779999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhcC----eEEE-EcChHHHHH
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFI-EVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~~----~i~v-tHd~~~~~~ 266 (313)
+++|+|+..||. .+++.+.++.+. .+++ +|+.+.+..
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 999999999999 355555555432 2454 455666654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=231.49 Aligned_cols=196 Identities=14% Similarity=0.054 Sum_probs=151.8
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------ 147 (313)
++++|+++||+..|+++. +|+|||++|++||..+|+||||||||||+++++|.++ |++|.+.+.|..
T Consensus 28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence 456899999999999998 9999999999999999999999999999999999998 999999887754
Q ss_pred ---CCCeEEEEeccCCCCCcccCCcccCHHHHHH-hcCCC----CCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcc
Q 021380 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAP----WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 148 ---~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~~~~~----~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv 217 (313)
.++.||+++..-...+....+++|-+.-+.. ..|.. ...+.+++..+++.++ ...++++..||-|||||+
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 2356888876532223334566666544321 11222 2344566788888888 356888999999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhH----HHHHHhhcC-----eEEEEcChHHHHH---HHH----hhhhccC
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~~-----~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
.||+|++.++++|++|+|+..||-..+ +.+.++... .+||||..+++.. +++ |+++..|
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 999999999999999999999998444 444444433 5899999999876 332 6666655
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=221.14 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=153.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC-CCCC-----
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPP----- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~-~~~~----- 149 (313)
.+|+++||+++|++.. +|+++||+|.+||.-+|||||||||||++..|+|..+ |+.|+|+++| .+..
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 4799999999999998 9999999999999999999999999999999999999 9999999998 4422
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcC--------CCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCC
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~--------~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekq 215 (313)
.-||--||.+-.+. .+||+||+........ ........++.++|+..+... +.....||+||||
T Consensus 77 ~IAr~GIGRKFQ~PtVfe--~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 77 RIARAGIGRKFQKPTVFE--NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHhccCccccCCeehh--hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 12677788865433 4899999988653221 112334567889999888554 4556699999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++.|...++.+|.+|++|+|+..+-+ .+-+.++.+... +++|.|||..+.. +|. |.+.+.|+.+++-
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 99996666666666666666666654 445555555543 5799999999877 333 8888999887763
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=260.61 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=150.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++ . +|+++||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999984 3 7999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCC--CCCcccCCcccCHHHHHH-hc----C-CCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCC
Q 021380 149 --PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (313)
Q Consensus 149 --~~~i~~v~q~~~--~~~~~~ltv~e~l~~~~~-~~----~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekq 215 (313)
...++|++|++. .++ +.+|+.+|+.+... .. + .......+++.++++.++.. .++++.+|||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred HHHCCCEEecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 135899999852 222 34899999876432 11 1 11112234577888888752 46778899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~ 281 (313)
|++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|.+.++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999994 4455555443 25799999999876 444 787777766654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=254.52 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=145.6
Q ss_pred CCCeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeE
Q 021380 74 EIPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i 152 (313)
+..+++++|+++.|++. . +++++||.|.+|+++||+||||+|||||||+|+|.+. |.+|+|.++.. -.+
T Consensus 318 g~~vl~~~~~~~~y~~~~~----l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~---v~i 387 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRL----LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGET---VKI 387 (530)
T ss_pred CCeeEEEeccccccCCCce----eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCc---eEE
Confidence 45699999999999764 5 8999999999999999999999999999999999999 99999998764 349
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
||+.|+...+. +..|+.+++... ........++..|..|+. ...+++..||||||.|+.+|..+..++.+
T Consensus 388 gyf~Q~~~~l~-~~~t~~d~l~~~------~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 388 GYFDQHRDELD-PDKTVLEELSEG------FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred EEEEehhhhcC-ccCcHHHHHHhh------CccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE
Confidence 99999964433 345666655432 112225678899999984 34568889999999999999999999999
Q ss_pred EEEcCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 230 VIVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 230 li~d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
|++|+|+.-||-+.++.|.+.+.. +|+||||..++.+
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 999999999999887777776653 5799999999876
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=226.13 Aligned_cols=171 Identities=12% Similarity=0.102 Sum_probs=129.8
Q ss_pred EEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 78 l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
|+++||++.|++..+ ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~~~ 72 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAYVS 72 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEEEe
Confidence 468999999976410 0129999999999999999999999999999999999999 9999999988 599999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHH------hhc-------CCCccCCCCCccCCCcchhhhhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRN-------QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~------l~~-------~~~~~~~~LSgGekqRv~la~al 223 (313)
|++.. +. .|+.+|+.+.... ......+.++. +.. ..+.....||+||+||++||+++
T Consensus 73 q~~~l-~~--~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 73 QEPWI-QN--GTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred cCchh-cc--CcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99654 32 6999998763211 11122222222 221 12345679999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHH-----Hhhc---CeEEEEcChHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~-----~l~~---~~i~vtHd~~~~~~ 266 (313)
+.+++++++|+|+..||....+.+. +..+ .+|++||+++.+..
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 9999999999999999995444332 2222 24799999988764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=268.10 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=154.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.+ +.++|+|+||+|++|++++|+||||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997531 1239999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
.+.++|++|+++.+. .|++||+.++. + ..+.+++.++++..+ .+.+..+ ..|||||||
T Consensus 554 r~~i~~v~Q~~~lF~---gTIreNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 554 HRQVALVGQEPVLFS---GSVRENIAYGL-----T-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HhhceEEecCccccc---cCHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 346999999976543 59999997642 2 122344555555443 2233322 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhh---c-CeEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~---~-~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
|++|||++..+++++++|+++.-||.+..+.+.+.. + .+|+|||+++.+.. +++ |++++.|+.+++.+.
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 999999999999999999999999996666665522 1 25799999998776 555 899999998887653
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=235.97 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=144.5
Q ss_pred CCeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
+..|+++|+++.|++ .. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKP----VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCCCCc----ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCC
Confidence 457999999999976 34 9999999999999999999999999999999999999 9999999998642
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHH---------HHh--h--cCCCccCCCCCc
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNL--R--NQGSVYAPSFDH 211 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l---------~~l--~--~~~~~~~~~LSg 211 (313)
.+.++|++|++.. +. .|+.+|+.... ......+.+.+ +.+ + ...+.....||+
T Consensus 90 ~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPIL-FS--GSIRFNLDPEC-------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcc-cc--cHHHHhcCcCC-------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCH
Confidence 2458999999643 32 47777764210 01111222222 222 1 112334569999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc------CeEEEEcChHHHHH--HHH----hhhhccCChh
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 279 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~ 279 (313)
||+||++||++++.+++++++|+|+..||....+.+.+++. .+|++||+++.+.. |++ |++++.|+++
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPE 239 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999954444444332 24799999999876 444 8888888877
Q ss_pred HHHH
Q 021380 280 DVAK 283 (313)
Q Consensus 280 e~~~ 283 (313)
++..
T Consensus 240 ~~~~ 243 (257)
T cd03288 240 NLLA 243 (257)
T ss_pred HHHh
Confidence 7644
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=270.67 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=157.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|+.++ ++.+|+|+||.|++|+.++|+|||||||||++++|.+++. |++|+|.++|.+.
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 599999999999875 5569999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHH---------HhhcCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~----~~~~LSgGekq 215 (313)
+..+|+|+|++..+. .|+.||+.++. +. ...+.+.+..+ .+-.+.+. .-.+|||||||
T Consensus 426 r~~iglV~QePvlF~---~tI~eNI~~G~-----~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ 496 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA---TTIRENIRYGK-----PD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ 496 (1228)
T ss_pred HhhcCeeeechhhhc---ccHHHHHhcCC-----Cc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH
Confidence 246999999985433 79999998753 21 12233333332 22222222 33479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC------eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~------~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.+|++|++||++..||.+.-..+++.++. .|+|+|.+.++.. +++ |++++.|+.+|++.
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999655555555543 5899999999988 444 99999999999876
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 577 ~ 577 (1228)
T KOG0055|consen 577 L 577 (1228)
T ss_pred c
Confidence 4
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=222.21 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=119.4
Q ss_pred EEEccceeEcccc--ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~--~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++. . +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~~----~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGRPKP----VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHH
Confidence 4689999999875 4 8999999999999999999999999999999999999 9999999998642
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
.+.++|++|+.. ++. .|+.+|+ ||+||+||++||++++.++
T Consensus 74 ~~~~i~~~~~~~~-~~~--~t~~e~l-----------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 74 LRKNIAYVPQDPF-LFS--GTIRENI-----------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred HHhhEEEEcCCch-hcc--chHHHHh-----------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 235889998853 222 3555553 9999999999999999999
Q ss_pred cEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH
Q 021380 228 KVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 228 ~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
+++++|+|+..||... .+.+.++.+ .+|++|||++++..
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 9999999999999844 444444433 24799999998753
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=262.34 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=152.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++|+++.|++.. ++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~i~~~~v~f~y~~~~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCCC---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 489999999997421 29999999999999999999999999999999999999 9999999999753
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGekq 215 (313)
.+.++|++|+++.+. -|+++|+.++. ..+.+++.++++.++ .+.+.. ...|||||||
T Consensus 414 ~~~i~~v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 414 RQGVAMVQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HhheEEEccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 356999999976544 49999998752 123445556655554 122332 2379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.+++++++|||+.-||++. .+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++.+
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999944 444444432 35799999988776 555 89999999988753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=261.16 Aligned_cols=192 Identities=15% Similarity=0.043 Sum_probs=145.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
||+++||+++|+++. +|+||||+|.+|+++||+||||||||||||+|+|+++ |++|+|.+++.. .++|++
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~~~ 70 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAWVN 70 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEEEe
Confidence 589999999999877 9999999999999999999999999999999999999 999999998743 388999
Q ss_pred ccCCCCCcccCCcccCHHHH-----------------------HHhc----CCCCCccHHHHHHHHHHhhcC---CCccC
Q 021380 157 MDGFHLYLSQLDAMEDPKEA-----------------------HARR----GAPWTFNPLLLLNCLKNLRNQ---GSVYA 206 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~l~~~---~~~~~ 206 (313)
|+..... .++.+++... .... .........++..+|+.++.. .++++
T Consensus 71 q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 147 (638)
T PRK10636 71 QETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV 147 (638)
T ss_pred cCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch
Confidence 8643211 2333322110 0000 001112234677888888853 46788
Q ss_pred CCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc-
Q 021380 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS- 274 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~- 274 (313)
.+|||||||||+||++++.++++|++|+|+..||....+.|.+++. .+|+||||++++.. +++ |+++.
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 8999999999999999999999999999999999966666665543 35799999999876 444 66653
Q ss_pred cCChhHH
Q 021380 275 TGKPPDV 281 (313)
Q Consensus 275 ~G~~~e~ 281 (313)
.|.....
T Consensus 228 ~g~~~~~ 234 (638)
T PRK10636 228 TGNYSSF 234 (638)
T ss_pred cCCHHHH
Confidence 4654443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=260.22 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=150.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++++++|++.. . +++|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 46899999832 3 8999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCC-CCCcccCCcccCHHHHHHhcCC------CCCccHHHHHHHHHHhhc---CCCccCCCCCccCCCc
Q 021380 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGA------PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 --~~~i~~v~q~~~-~~~~~~ltv~e~l~~~~~~~~~------~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqR 216 (313)
...++|++|+.. ....+.+|+.+|+.+....... ......+.+.++++.++. ..++++.+||||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 135899999852 1112247999998764321110 111223456788888875 2467788999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhHHHHH----Hhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~~~l~----~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++||++++.++++|++|+|+..||....+.+. ++.+ .+|++|||++++.. |++ |++++.|.+++..
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999995444443 3333 25799999999876 444 7888888776654
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 485 ~ 485 (501)
T PRK11288 485 E 485 (501)
T ss_pred H
Confidence 3
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=266.65 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=153.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 463 ~I~~~~vsf~Y~~~~--~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE--TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCC--ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGekq 215 (313)
++.++|++|+++.+. -|++||+.+.. + ..+.+++.+.++..+ .+.+.. ...|||||||
T Consensus 538 r~~i~~v~Q~~~lf~---~TI~eNi~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 538 RRNIGYVPQDPRLFY---GTLRDNIALGA-----P-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HhccEEECCChhhhh---hhHHHHHhCCC-----C-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 346999999976443 59999997641 1 223445555555443 222332 3479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+++..+++++++|+++.-||++. .+.+.++.+ ..|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999944 444444432 35799999998866 555 99999999888765
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=256.58 Aligned_cols=185 Identities=16% Similarity=0.005 Sum_probs=139.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP----- 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~~~~----- 148 (313)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ + ++|+|.++|.+.
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 45899999999998766 9999999999999999999999999999999999875 5 699999988542
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcc
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv 217 (313)
.+.++|++|+.........++.+++.+.... +........+++.++++.++.. .++++.+||||||||+
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 1348999998532222123454444322110 1111111234577888888843 4667789999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---C-eEEEEcChHHHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---E-KWFIEVDLDTAMQ 266 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~-~i~vtHd~~~~~~ 266 (313)
+||++++.++++|++|+|+..||.. +.+.|.++.+ . +|++|||++++..
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 9999999999999999999999994 4444444432 2 5799999998854
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-30 Score=261.47 Aligned_cols=194 Identities=18% Similarity=0.144 Sum_probs=153.5
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--CceeeeCCCCC----CCeEE
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVKP----PDVAT 153 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~--~G~i~~~~~~~----~~~i~ 153 (313)
++|+++.|+++. +|+|+||++++||++||+||||||||||+++|+|+++ |+ +|+|.++|.+. .+.++
T Consensus 71 ~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i~ 143 (659)
T PLN03211 71 ISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRTG 143 (659)
T ss_pred cccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccceE
Confidence 678899998877 9999999999999999999999999999999999997 75 89999999653 24589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCC----CccHHHHHHHHHHhhcCC-------CccCCCCCccCCCcchhhhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~-------~~~~~~LSgGekqRv~la~a 222 (313)
|++|++..++ .+|+.|++.+....+ .+. ....+++.++++.++... +..+..||||||||++||++
T Consensus 144 yv~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~a 220 (659)
T PLN03211 144 FVTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220 (659)
T ss_pred EECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHH
Confidence 9999965443 489999999865443 121 122345677888887432 33566899999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHH-HHH---HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~-~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||. .+.+.|+++.+ .+|+++|+++. +.+ +++ |+++..|+++++..
T Consensus 221 L~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 221 MLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999 44555555442 25799999873 443 554 89999998887765
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-30 Score=266.74 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=151.7
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
-|+++||+++|++ .. +|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 473 ~I~~~~vsf~y~~~~~----iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYGYGSN----ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcCCCCc----ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHH
Confidence 4899999999973 33 9999999999999999999999999999999999999 9999999999762
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGek 214 (313)
++.++|++|+++.+. -|++||+.++. ....+.+++.+.++..+ .+.+.. ...||||||
T Consensus 546 lr~~i~~v~Q~~~lf~---gTI~eNi~l~~-----~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 546 LRQFINYLPQEPYIFS---GSILENLLLGA-----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHHheEEEecCceehh---HHHHHHHhccC-----CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 346999999976443 59999997642 11223444455554433 223332 347999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc-CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~-~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||++||||++.+++++++|+++.-||.+ +.+.|.++.+ .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999994 4444444322 35799999998766 555 99999999888754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-30 Score=227.94 Aligned_cols=166 Identities=16% Similarity=0.077 Sum_probs=129.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCC-------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~------- 148 (313)
|+++|+++.|++.. +|+|+||++.+|++++|+|+||||||||+++|+|+ ++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 46899999998766 99999999999999999999999999999999999 46 9999999998642
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
...++|++|++..++ .+++.+++ ......|||||+||++||++++.+
T Consensus 74 ~~~~~i~~v~q~~~~~~--~~~~~~~l-----------------------------~~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 74 RARLGIFLAFQYPPEIP--GVKNADFL-----------------------------RYVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred HhhCcEEEeecChhhcc--CccHHHHH-----------------------------hhccccCCHHHHHHHHHHHHHhcC
Confidence 123889999854322 23333221 112248999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH----HHH----hhhhccCChhHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~----rvi----gr~v~~G~~~e~~ 282 (313)
++++++|+|+..||. .+++.+.++.+ .+|++||+++.+.. |++ |++++.| +.++.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999998 44455555433 25799999998762 333 7777777 44443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-30 Score=256.44 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=135.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 499999999997532 28999999999999999999999999999999999999 99999999997643
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekqR 216 (313)
+.++|++|+++.+. -|++||+.++. + ..+.+++.++++..+ .+.+..+ ..||||||||
T Consensus 408 ~~i~~V~Q~~~lF~---~TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 408 RRISVFAQDAHLFD---TTVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred hheEEEccCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 46999999976544 59999998752 2 223455556665544 2233333 3799999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcCh
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~ 261 (313)
++||||++.+++++++||++.-||.+. .+.+.++.. .+|+|||++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999944 444444432 257999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-30 Score=260.75 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=153.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||++.|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 338 ~i~~~~v~f~y~~~~--~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 338 SLTLNNVSFTYPDQP--QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred eEEEEEEEEECCCCC--CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996521 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--------CCc----cCCCCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSV----YAPSFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~----~~~~LSgGekqR 216 (313)
++.++|++|+++.+. -|+.||+.++. + ..+.+.+.+.++.++.. .+. ....||||||||
T Consensus 413 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFS---ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhc---ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH
Confidence 245999999975443 59999987642 2 23445566666666522 122 234799999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++||++++.+++++++|+++..||++..+ .+.++.+ .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999994444 4444432 25799999998876 554 89999999888764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-30 Score=244.80 Aligned_cols=191 Identities=14% Similarity=0.098 Sum_probs=152.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|+++. ++|+++||+|++||.|||+|+|||||||++|+|.+++ -++|+|.++|++.
T Consensus 351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 499999999998654 3999999999999999999999999999999999999 6899999999873
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgGekq 215 (313)
++.|||+|||...+. -|++.|+.++ .+.. ..+++.+..++.+. +-. ..-..|||||||
T Consensus 424 R~~Ig~VPQd~~LFn---dTIl~NI~YG-----n~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQ 494 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFN---DTILYNIKYG-----NPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQ 494 (591)
T ss_pred hhheeEeCCcccccc---hhHHHHhhcC-----CCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHH
Confidence 356999999975443 4899998764 3332 33445556565552 211 233489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||+++++++.+|.++++|+++.-||- ++++.+.+... ++|||-|+++++.. +++ |++.+.|+-.+++.
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999997 44555555332 25799999999988 665 89999999888765
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-31 Score=225.25 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=115.8
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEecc
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~ 158 (313)
+++||++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-------- 65 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-------- 65 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc--------
Confidence 4689999998765 9999999999999999999999999999999999999 999999988743210
Q ss_pred CCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 159 ~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
. .. ......+.+. .++++.++. ..+..+..||+||+||++||++++.+++++++|+|+
T Consensus 66 -~--~~--~~~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 66 -L--SP--KELARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred -C--CH--HHHHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 00 0000011111 115555553 235667899999999999999999999999999999
Q ss_pred cccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 237 LFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 237 llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
..||.. +.+.+.++.+ .+|++|||++++..
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999983 4444444433 24799999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-30 Score=258.83 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=149.9
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||+++|++ .. +|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~I~~~~vsf~y~~~~~----iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQ----GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCCCCc----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHH
Confidence 5999999999975 34 8999999999999999999999999999999999999 9999999999653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCcc----CCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~LSgGek 214 (313)
.+.++|++|+++.+. -|+++|+.++. + ..+.+.+.+.++.++ .+.+.. ...||||||
T Consensus 407 ~r~~i~~v~Q~~~lf~---~Ti~~Ni~~~~-----~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN---RSIEDNIRVGR-----P-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred HHhheEEEecCccccc---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 256999999975443 59999997641 1 122334444444433 222322 337999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++|||+++.+++++++|+++.-||++ +.+.+.++.+ .+|+|||+.+.+.. +++ |++++.|+.+++.
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999994 4444444432 35799999988766 555 8888899887775
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
+
T Consensus 558 ~ 558 (588)
T PRK13657 558 A 558 (588)
T ss_pred H
Confidence 3
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-30 Score=257.97 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=152.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+|+||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 330 ~i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 499999999996521 138999999999999999999999999999999999999 9999999999652
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
.+.++|++|+++.+. -|+++|+.++ .++..+.+++.++++.++ .+.+..+ ..|||||||
T Consensus 405 ~~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 405 RRQVALVSQDVVLFN---DTIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhhceEEccCccccc---ccHHHHHhcC-----CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 346999999976443 5999998754 121334555666666544 2233333 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++|||+++.+++++++|||+.-||++. .+.|.+..+ .+|+|||+.+.... +++ |++++.|+.+++..
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999944 444444432 35799999988765 555 88888998887753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-30 Score=255.72 Aligned_cols=195 Identities=19% Similarity=0.166 Sum_probs=148.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
.++|+++|+++ . +|+++||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 266 ~~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA 333 (510)
T ss_pred CceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999983 2 6999999999999999999999999999999999999 9999999988542
Q ss_pred ---CCeEEEEeccCC--CCCcccCCcccCHHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcc
Q 021380 149 ---PDVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 149 ---~~~i~~v~q~~~--~~~~~~ltv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv 217 (313)
...++|++|+.. .++ +.+|+.+|+...... ... ......+.+.++++.++.. .++++.+||||||||+
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 135899999741 122 247888887542110 111 1111234567888888853 4677889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999994 3444444432 25799999999886 444 8888777776544
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-30 Score=256.71 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=145.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++|+++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++ |++|+|.++ ..++|
T Consensus 338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y 404 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY 404 (590)
T ss_pred ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence 4589999999999763 5899999999999999999999999999999999999 999999886 24899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
++|+.... ..+|+.+++.+....++ ......++++.++. ..++++.+|||||||||+||++++.++++|++
T Consensus 405 ~~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 405 KPQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred ecccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99985432 35899999876532221 12345678888874 35778889999999999999999999999999
Q ss_pred cCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH---hhhhccCC
Q 021380 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGK 277 (313)
Q Consensus 233 d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi---gr~v~~G~ 277 (313)
|+|+..||. .+.+.|+++.+ .+|+||||++++.. |++ |+....|.
T Consensus 478 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 478 DEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGH 536 (590)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeee
Confidence 999999999 34444555432 25799999999876 444 55544443
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-31 Score=262.87 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=152.9
Q ss_pred eEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
-|+++||+++|+ ++. +|+|+||++++|+++||+||||||||||++.|.++++ |++|+|.++|.+.
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 499999999998 456 9999999999999999999999999999999999999 9999999998763
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHh---------hcCCCccCC----CCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQGSVYAP----SFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l---------~~~~~~~~~----~LSgGek 214 (313)
++.+++++||++.+. -|+.+|+.++.. . ...+++.+.++.. ..+.+..++ .||||||
T Consensus 401 lr~~I~~V~Qd~~LF~---~TI~~NI~~g~~-----~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 401 LRKRIGIVSQDPLLFS---GTIRENIALGRP-----D-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHhccEEcccceeec---ccHHHHHhcCCC-----C-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 356999999976443 599999987632 1 2223344443333 223444443 8999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh----c--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~----~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||||++.+|+++++|+++.-+|.+.-..+.+.. + .+++|+|.+..+.. +++ |++++.|+.+++.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999984433333333 2 35789999998887 555 9999999999987
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 552 ~~ 553 (567)
T COG1132 552 AK 553 (567)
T ss_pred Hc
Confidence 64
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-30 Score=260.01 Aligned_cols=202 Identities=15% Similarity=0.108 Sum_probs=158.6
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++|+++.|++......+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 479999999999642111238999999999999999999999999999999999999 9999999998652
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...++ ++|+.+|+.+.....+.+.....+++.++++.++. ..+..+.+||+||+||++||+
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HHHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHH
Confidence 235899999964333 47999999876544443333334567788888874 346677899999999999999
Q ss_pred hcccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
+++.+++++++|+|+..||... .+.+.++.+ .++++||+++.+.. |++ |++++.|++++..
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999944 344444332 24799999998755 444 8888888877654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-30 Score=246.43 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=156.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.++++||+++|.+.. .++|+|+||++++||.++|+|++|||||||+++|+|.+. |++|+|.++|.+.
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 799999999998754 349999999999999999999999999999999999999 9999999999663
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgGekq 215 (313)
.+.++++.|.... +. -|+++|+... .+ ....+.+.++++.++. +.+. .-..|||||+|
T Consensus 411 ~e~i~vl~Qr~hl-F~--~Tlr~NL~lA-----~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 411 RETISVLTQRVHL-FS--GTLRDNLRLA-----NP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHhhhccchHH-HH--HHHHHHHhhc-----CC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 2358889998643 32 4899998764 22 2345566777777662 1222 23489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+++.+++.++++|||+-.||.. +++.+.+.+. ..+||||++..+.+ ||+ |+++++|+..++..
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999984 4444444443 35799999998888 766 99999999999876
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-30 Score=227.17 Aligned_cols=178 Identities=19% Similarity=0.223 Sum_probs=136.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
|+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. .+.++|++|++...+...+|+.+|+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999999 9999999999753 346999999864332223688888876422
Q ss_pred hc-C---CCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHH
Q 021380 179 RR-G---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVS 248 (313)
Q Consensus 179 ~~-~---~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~ 248 (313)
.. + .+.......+.++++.++.. .+.++.+||+||+||++|+++++.+++++++|+|+..||. .+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 1 11122344577788888743 4667789999999999999999999999999999999999 3444444
Q ss_pred Hhhc---CeEEEEcChHHHHH---HHH---hhhhccCChhHHH
Q 021380 249 SMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 282 (313)
Q Consensus 249 ~l~~---~~i~vtHd~~~~~~---rvi---gr~v~~G~~~e~~ 282 (313)
++.+ .+|++|||++++.. +++ |+++..|++.++.
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhc
Confidence 4433 25799999998765 443 7888888777653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=224.31 Aligned_cols=171 Identities=10% Similarity=0.018 Sum_probs=129.8
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----------
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 148 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------- 148 (313)
.+.|+.+.|++.. .+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 4788999997432 28999999999999999999999999999999999999 9999999988542
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccC
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGe 213 (313)
.+.++|++|++.. +. .|+.+|+.+... . ......++++.++. ..+.++..|||||
T Consensus 76 ~~~~~i~~~~q~~~~-~~--~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 76 RNRYSVAYAAQKPWL-LN--ATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhcceEEEEcCCCcc-cc--ccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 1358999999643 32 689998865421 1 11222333333321 1234677999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhhHHHHHH------hhc---CeEEEEcChHHHH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS------MFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~------l~~---~~i~vtHd~~~~~ 265 (313)
+||++||++++.+++++++|+|+..||....+.+.+ +.+ .+|++|||.+.+.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 999999999999999999999999999954443322 222 2479999998763
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-30 Score=252.61 Aligned_cols=194 Identities=12% Similarity=0.096 Sum_probs=142.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
.++|+++|+++.| .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 248 ~~~i~~~~l~~~~--~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 248 EVILEVRNLTSLR--QP----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNAN 318 (491)
T ss_pred CcEEEEeCccccc--Cc----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHH
Confidence 3579999999984 34 8999999999999999999999999999999999999 99999999985432
Q ss_pred ----CeEEEEeccCC--CCCcccCCcccC-----HHHHHHhcCC-CCCccHHHHHHHHHHhhc---CCCccCCCCCccCC
Q 021380 150 ----DVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVG 214 (313)
Q Consensus 150 ----~~i~~v~q~~~--~~~~~~ltv~e~-----l~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~LSgGek 214 (313)
..++|++|+.. ..+ +.+++.+| +.+....++. ........+.++++.++. ..++++.+||||||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHCCCEEcCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 23889999842 112 23555444 3221111121 111223456777888764 24678889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
||++||++++.++++|++|+|+..||... ++.+.++.+ .+|++|||++++.. |++ |+++..+++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 99999999999999999999999999944 344444332 24799999999876 444 666654443
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-30 Score=255.72 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=150.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||++.|++.. ...+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 337 ~i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 589999999996421 1238999999999999999999999999999999999999 9999999999652
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgGekq 215 (313)
.+.++|++|+++.+. .|+++|+.++ .+ ..+.+++.+.++.++ .+.+. ....|||||||
T Consensus 413 ~~~i~~~~Q~~~lf~---~Ti~~Ni~~~-----~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 413 RARMALVPQDPVLFA---ASVMENIRYG-----RP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhceEEccCCcccc---ccHHHHHhcC-----CC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 245999999976443 5999998764 12 123344555555443 12232 23379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|+++|+++..+++++++|+++.-+|+.. .+.+.++.+ .+|+|||+.+.... |++ |++++.|+.+++.+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 9999999999999999999999999944 344444432 35799999988766 555 89999999877644
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=214.09 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=107.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|+++|+++.|++.. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~------- 66 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSF------- 66 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCc-------
Confidence 46899999998766 9999999999999999999999999999999999999 999999988743210
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCccc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l 237 (313)
.+..+ .. . ..++ ++++||+||+||+++|++++.+++++++|+|+.
T Consensus 67 ---------~~~~~---~~-~-----------------~~i~-----~~~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 67 ---------ASPRD---AR-R-----------------AGIA-----MVYQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred ---------CCHHH---HH-h-----------------cCeE-----EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 00000 00 0 0000 011199999999999999999999999999999
Q ss_pred ccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 238 FLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 lLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
.||.. +++.++++.+ .+|++|||++.+..
T Consensus 112 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99994 4444444432 24799999987654
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=254.08 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=147.2
Q ss_pred CCeEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 75 IPVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
.++|+++||++.|++ .. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++. ..++
T Consensus 506 ~~~L~~~~ls~~y~~~~~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~---~~ig 575 (718)
T PLN03073 506 PPIISFSDASFGYPGGPL----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAK---VRMA 575 (718)
T ss_pred CceEEEEeeEEEeCCCCe----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCc---eeEE
Confidence 468999999999964 44 8999999999999999999999999999999999999 99999998753 3599
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|++|+.. . .+++.++........ .+ ....+.+..+|+.++.. .++++..||||||||++||++++.++++|
T Consensus 576 yv~Q~~~--~--~l~~~~~~~~~~~~~-~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL 649 (718)
T PLN03073 576 VFSQHHV--D--GLDLSSNPLLYMMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649 (718)
T ss_pred EEecccc--c--cCCcchhHHHHHHHh-cC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 9999842 1 245555543322111 11 12345678889988853 36678899999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPD 280 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e 280 (313)
++|+|+..||....+.+.+.+. .+|+||||++++.. |++ |+++ ..|...+
T Consensus 650 LLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 650 LLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999955555544432 35799999999876 443 6666 4566544
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-30 Score=219.12 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=153.8
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
|+++.|+.+.|.. .....++|+++|++|.+|+++.|+|.||||||||++.|+|.+. |++|.|.++|.+..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 4678888888853 2334559999999999999999999999999999999999999 99999999998743
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHh---cCCCCCc---cHHHHHHHHHHhhc----CCCccCCCCCccCCCcc
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF---NPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~---~~~~~~~---~~~~~~~~l~~l~~----~~~~~~~~LSgGekqRv 217 (313)
..++-||||+..-..+.+|+.||+..+... ++..... ..+.+.+.+..++. ..+.++.-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 236678999876666679999999887543 2222211 22334555666653 34567889999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC--------eEEEEcChHHHHH---HHH----hhhhc
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~--------~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+++.|.+.++++|++|+-+.-||+..-+.+.++-++ .+||||+++.+.. |.+ |+++.
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999999999999999666555555433 4799999999988 666 88775
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=253.18 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=147.8
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.|+++||++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 334 ~i~~~~v~~~y~~~~~----~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFANSSQ----GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCCCCc----cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHH
Confidence 5999999999975 34 8999999999999999999999999999999999999 9999999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgGek 214 (313)
.+.++|++|+++.+. .|+++|+.++. +. ...+.+.+.++..+ .+. ......||||||
T Consensus 407 ~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN---RSIRENIRLGR-----EG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred HHhheEEEccCCccCc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 246999999975443 59999987642 11 12223333332221 111 234458999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHH----HHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l----~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+++..||.+..+.+ .++.. .+|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999544444 33322 25799999998865 555 8888999887775
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 558 ~ 558 (585)
T TIGR01192 558 Q 558 (585)
T ss_pred H
Confidence 4
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=243.71 Aligned_cols=180 Identities=13% Similarity=0.038 Sum_probs=143.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
|.+|+++|+++.|+++. +|+++||+|.+|+++||||+||||||||||+|+|.+. |++|+|...+. .+++|
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence 56899999999999988 9999999999999999999999999999999999999 99999988653 34999
Q ss_pred EeccCCCCCcccCCcccCHHHHHHh-----------cC-------------------CCCCccHHHHHHHHHHhhcCC-C
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHAR-----------RG-------------------APWTFNPLLLLNCLKNLRNQG-S 203 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~-----------~~-------------------~~~~~~~~~~~~~l~~l~~~~-~ 203 (313)
+.|+..... ..|+.+.+...... +. ...-....++..+|..++... +
T Consensus 71 l~Q~~~~~~--~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 71 LSQEPPLDP--EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred eCCCCCcCC--CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 999965333 35776655442110 00 000011244556666676433 7
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+++.+||||||.||+||+++..+|++|++|+|+.-||-+.++.|.+++. .+|+||||.+++..
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 8889999999999999999999999999999999999977777777653 36899999998876
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=227.69 Aligned_cols=185 Identities=10% Similarity=0.096 Sum_probs=139.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
..+.|+++|+++. ++. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.++| .++
T Consensus 36 ~~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~ 101 (282)
T cd03291 36 DDNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RIS 101 (282)
T ss_pred CCCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEE
Confidence 3457999999985 344 9999999999999999999999999999999999999 9999999987 389
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHH---------hhcC----CCccCCCCCccCCCcchhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQ----GSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~----~~~~~~~LSgGekqRv~la 220 (313)
|++|+... +. .|+.+|+.+.... ....+.+.++. +... .+..+..||+||+||++||
T Consensus 102 yv~q~~~l-~~--~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA 171 (282)
T cd03291 102 FSSQFSWI-MP--GTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171 (282)
T ss_pred EEeCcccc-cc--cCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence 99999643 32 4888887653211 01111222222 1111 1223569999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhHHHHHH-----hhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~~~l~~-----l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
++++.+++++++|+|+..||....+.+.+ +.. .+|++|||++.+.. +++ |+++..|.+.++.
T Consensus 172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999855443332 221 25799999998754 444 8888888877764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-30 Score=253.89 Aligned_cols=192 Identities=16% Similarity=0.088 Sum_probs=146.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++|+++.|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 316 ~i~~~~v~~~y~~~~--~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGK--KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH---------HHHHhhcCCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~l~~~~~----~~~~~LSgGekq 215 (313)
.+.++|++|+++.+. .|+++|+.+.. + ..+.+.+.+ .++.+..+.+ .....|||||||
T Consensus 391 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 391 GKHIGYLPQDVELFP---GTVAENIARFG-----E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred hhheEEecCCccccc---ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 346999999975443 48999987431 1 122233333 3333322222 234589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhh---cCeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF---DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~---~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|++||+++..+++++++|+++..||.+ +.+.+.++. ..+|++||+++.+.. +++ |++++.|+.+++.
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999984 444454543 135799999987655 544 8888899877664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=206.93 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=151.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------- 147 (313)
.|.+++.+++|.||+.. -.+||||++.+||++||+|.+|||||||+++|++.+. |+.|+|.+....
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 46899999999999887 8899999999999999999999999999999999999 999999775322
Q ss_pred ----------CCCeEEEEeccCCCCCcccCCcccCHHH-----HHHhcCCCCCccHHHHHHHHHHhhcCC---CccCCCC
Q 021380 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKE-----AHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF 209 (313)
Q Consensus 148 ----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~L 209 (313)
.+..-|++.|++..-.....+.-.|+-. +.+.|| ...+.+.++|+.+.... +..+..+
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtF 152 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTF 152 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCccccc
Confidence 0113688999876544433344555433 222333 23455678888888443 4567799
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----C----eEEEEcChHHHHH---HHH----hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~----~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
||||+||+.||+-+...++++++|+|+-.||-.+...+.+++. + .++||||+..+.- |.+ |++++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999999999999999999999999999999844444444333 2 4799999988755 444 88999
Q ss_pred cCChhHHHH
Q 021380 275 TGKPPDVAK 283 (313)
Q Consensus 275 ~G~~~e~~~ 283 (313)
.|-++.++.
T Consensus 233 ~GLTDrvLD 241 (258)
T COG4107 233 SGLTDRVLD 241 (258)
T ss_pred ccccccccc
Confidence 998777654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=257.27 Aligned_cols=194 Identities=15% Similarity=0.163 Sum_probs=151.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.. ..+|+|+||+|++|+.++|+|+||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 455 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDS--PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgGekq 215 (313)
++.++|++|+++.+. .|++||+.+. .+ ..+.+.+.+.++..+ .+.+. ....|||||||
T Consensus 530 r~~i~~v~q~~~lf~---~ti~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 530 RRQMGVVLQENVLFS---RSIRDNIALC-----NP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHhCeEEccCCeehh---hhHHHHHhcC-----CC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 245999999976443 5999998763 12 123344444444433 22232 23489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.+++++++|+++..||+. +.+.+.++.. .+|++||+++.+.. +++ |++++.|+.+++..
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999994 4444444432 25799999998866 555 89999999888764
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 681 ~ 681 (694)
T TIGR01846 681 L 681 (694)
T ss_pred c
Confidence 3
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=206.12 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=111.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST---VKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe---EEEEEEcc
Confidence 46899999998765 9999999999999999999999999999999999999 99999999874 34777766
Q ss_pred cCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCccc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l 237 (313)
||+||+||++||++++.+++++++|+|+.
T Consensus 71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999999999999999999999
Q ss_pred ccChhhHHHHHHhh----cCeEEEEcChHHHHH
Q 021380 238 FLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 238 lLDE~~~~~l~~l~----~~~i~vtHd~~~~~~ 266 (313)
.||....+.+.+++ ..++++||+.+++..
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 99985444444433 335799999998754
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=250.74 Aligned_cols=193 Identities=12% Similarity=0.141 Sum_probs=149.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++|++++|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 489999999996421 128999999999999999999999999999999999999 9999999998753
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~LSgGekq 215 (313)
++.++|++|+++.+. -|+++|+.++. + ....+.+.+.++..+ .+.+ .....|||||||
T Consensus 388 ~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 388 RSRLAVVSQTPFLFS---DTVANNIALGR-----P-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HhheEEEccCCeecc---ccHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 246999999975433 49999987641 1 123334444444432 1122 233479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.+++++++|+++..||.+. .+.+.++.. .+|++||+++.+.. +++ |++++.|+.+++..
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999944 444444332 25799999988765 554 89999999887754
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-29 Score=223.05 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=122.8
Q ss_pred cccccceee-----cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcc
Q 021380 96 PTSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 96 iL~~is~~i-----~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~ 170 (313)
.+++++|++ .+|++++|+||||||||||+++|+|+++ |++|+|.++|. .++|++|+....+ .+|+.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~~~~~~--~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQYIKADY--EGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEecccccCCC--CCCHH
Confidence 455666665 4799999999999999999999999999 99999999875 5899999854333 47999
Q ss_pred cCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hH
Q 021380 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VW 244 (313)
Q Consensus 171 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~ 244 (313)
+++.+....... ......++++.++. ..++++.+|||||+||++||++++.+++++++|+|+..||.. +.
T Consensus 80 e~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~ 155 (246)
T cd03237 80 DLLSSITKDFYT----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155 (246)
T ss_pred HHHHHHhhhccc----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 988654322211 12234567777763 346778899999999999999999999999999999999993 44
Q ss_pred HHHHHhhc----CeEEEEcChHHHHH
Q 021380 245 KDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 245 ~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
+.|.++.. .+|++|||++++..
T Consensus 156 ~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 156 KVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44545432 25799999998875
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=221.22 Aligned_cols=174 Identities=12% Similarity=0.077 Sum_probs=128.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-eCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
+|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|. +++... .+.+.... .+.+|+.+|+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~~~~l--~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGANSFI--LPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----cccccccc--CCcCcHHHHHH
Confidence 7999999999999999999999999999999999999 9999997 665422 12233222 23589999999
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHH---
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS--- 249 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~--- 249 (313)
+....++.... +....+++.++ ...++++..||+|||||+++|++++.+++++++|+|+..+|......+.+
T Consensus 72 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 72 MMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALA 148 (213)
T ss_pred HHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHH
Confidence 87665543211 11122222232 34567788999999999999999999999999999999999843333332
Q ss_pred -hh-c-CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 250 -MF-D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 250 -l~-~-~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
.. + .+|++|||++.+.. +++ |+++..|+..+..
T Consensus 149 ~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 149 CQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 22 2 35799999998875 544 8888888777663
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=204.20 Aligned_cols=182 Identities=14% Similarity=0.057 Sum_probs=146.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
|+.++||+...++.. .|-++||+|.+|||+-|+||+|||||||+..+.|.+...+.-+|+++++++.. .+
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 588999999998887 99999999999999999999999999999999999986666799999998762 46
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+|++|||+..++ +++|.+|+.|..... .........+...|++.+.. .+..+.+||||||.||++-+++...++
T Consensus 78 q~GiLFQD~lLFp--hlsVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 78 QIGILFQDALLFP--HLSVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred heeeeeccccccc--ccccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 7999999976554 599999998853221 11122344567788888843 355677999999999999999999999
Q ss_pred EEEEcCcccccChhhHHHHHHhhc--------CeEEEEcChHHHH
Q 021380 229 VVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAM 265 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~~l~~l~~--------~~i~vtHd~~~~~ 265 (313)
++++|+|+.-||-.+.+..+++.- -+++||||.+.+.
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999765555555431 1479999998765
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=246.20 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=136.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 320 ~i~~~~v~f~y~~~~--~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR--APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCC--cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 599999999997531 128999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCc----cCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~LSgGekq 215 (313)
.+.++|++|+++.+. .|++||+.++. + ....+.+.+.++..+ .+.+. ....|||||||
T Consensus 395 r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA---GTIAENIRLAR-----P-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HhheEEEcCCCcccC---cCHHHHHhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 235999999976443 59999987642 1 123344555555443 22233 23489999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~ 265 (313)
|++||++++.+++++++|+++.-+|++..+ .+.++.. .+|+|||+++.+.
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 999999999999999999999999994444 4444322 2579999998764
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-29 Score=271.36 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=155.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|.+.. .++|+||||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 599999999996431 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.+++++||++.+. -|+++|+..+. ..+.+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1312 R~~IsiVpQdp~LF~---GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFS---GTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred HhccEEECCCCcccc---ccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence 356999999986543 49999986531 223455556655543 2334333 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||.+.-+|.+ +.+.|++.+. .+|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999984 4444555443 25799999999988 666 99999999999875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-29 Score=271.37 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=154.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 499999999995421 129999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.+++++|+++.+. -|+++|+.... ..+.+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1309 R~~i~iVpQdp~LF~---gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFS---GTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HhhcEEECCCCeeeC---ccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 356999999986543 49999986531 233445556655543 2233333 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-+|.+. .+.|++.++ .+|+|+|.++.+.. |++ |++++.|++++++.
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999844 444444433 25799999999988 666 99999999999875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-29 Score=270.45 Aligned_cols=211 Identities=13% Similarity=0.072 Sum_probs=159.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----CCe
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDV 151 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----~~~ 151 (313)
.+|+++||++.|+.+.....+|+|||+++++|+++||+||||||||||+++|+|+++...|++|+|.++|.+. .+.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3689999999996322223499999999999999999999999999999999999851124789999999653 356
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCC---CCCccHHHHHHHHHHhhc--CCCccCC----CCCccCCCcchhhhh
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~----~LSgGekqRv~la~a 222 (313)
++|++|++..++ .+||+|++.+....+.. +.....+.+.++++.++. ..+..+. .||||||||++||++
T Consensus 838 i~yv~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 838 IGYVQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 899999865433 48999999987655421 111223456788888874 3455555 799999999999999
Q ss_pred cccCcc-EEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHH-H---HHH----h-hhhccCChhH---HH
Q 021380 223 VGLQHK-VVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM-Q---RVL----K-RHISTGKPPD---VA 282 (313)
Q Consensus 223 l~~~a~-~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~-~---rvi----g-r~v~~G~~~e---~~ 282 (313)
++.+++ +|++|||+..||. .+++.|+++.+. +|+++|+++... . +++ | +++..|++.+ .+
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 9999999999998 455555555432 579999998642 2 544 5 8888888643 34
Q ss_pred HHHHHh
Q 021380 283 KWRIEY 288 (313)
Q Consensus 283 ~~~~~~ 288 (313)
..|++.
T Consensus 996 ~~yf~~ 1001 (1394)
T TIGR00956 996 INYFEK 1001 (1394)
T ss_pred HHHHHh
Confidence 455554
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-29 Score=232.97 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=131.9
Q ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 112 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 112 IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.++|++|+...++ .+|+.+|+.+....++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP--HMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccC--CCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999999 9999999998643 245999999964333 58999999987654433322
Q ss_pred ccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeE
Q 021380 186 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKW 255 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i 255 (313)
...+++.++++.++. ..++++.+||||||||++||++++.+++++++|+|+..||.. +++.|.++.. .+|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 223456788888874 356778899999999999999999999999999999999994 4444444432 257
Q ss_pred EEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 256 FIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|||++++.. |++ |+++..|++.++..
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999998876 554 88888898887754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=245.28 Aligned_cols=180 Identities=15% Similarity=0.133 Sum_probs=139.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. ++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 599999999996421 28999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCcc-------CCCCCccCCCcchhhh
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------~~~LSgGekqRv~la~ 221 (313)
+.++|++|+++.+. .|+.+|- ...+.+.+.+.++.++...... -..||||||||++||+
T Consensus 396 ~~~i~~v~q~~~lf~---~ti~~n~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 396 RKLFSAVFTDFHLFD---QLLGPEG----------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLL 462 (547)
T ss_pred hhheEEEecChhHHH---Hhhcccc----------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHH
Confidence 46999999975433 4666651 1233455667777776432211 2489999999999999
Q ss_pred hcccCccEEEEcCcccccChhhHHH----HHHhh---c-CeEEEEcChHHHHH--HHH----hhhhcc
Q 021380 222 LVGLQHKVVIVDGNYLFLDGGVWKD----VSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIST 275 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~~~~~----l~~l~---~-~~i~vtHd~~~~~~--rvi----gr~v~~ 275 (313)
+++.+++++++|+++..||.+..+. +.+.. + .+|+|||+++.+.. +++ |++++.
T Consensus 463 al~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999954443 33332 2 35799999987655 444 666654
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=205.36 Aligned_cols=176 Identities=16% Similarity=0.101 Sum_probs=141.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~------ 150 (313)
+++.+|++..-+... ++.++||++.+||++-|.||||||||||||+|+|++. |++|+|.+++.....
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 578899999998887 9999999999999999999999999999999999999 999999999765322
Q ss_pred -eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCc
Q 021380 151 -VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 151 -~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
.+-|+--.+-. ...+|++||+.|....++. .+...+.+.++.++. ..+.++.+||-|||+||+||+-.+..+
T Consensus 75 ~~l~yLGH~~gi--K~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 75 QALLYLGHQPGI--KTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HHHHHhhccccc--cchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence 12233222122 2358999999999887764 234567888899984 467788899999999999999999999
Q ss_pred cEEEEcCcccccChhhHHHHHHhhcC-------eEEEEcChHHH
Q 021380 228 KVVIVDGNYLFLDGGVWKDVSSMFDE-------KWFIEVDLDTA 264 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l~~l~~~-------~i~vtHd~~~~ 264 (313)
.+.++|+|+.-+|.+-...+..++.. ++..||..--.
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999998666666555432 35788886443
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-28 Score=208.09 Aligned_cols=202 Identities=19% Similarity=0.088 Sum_probs=147.6
Q ss_pred CCeEEEccceeEcccc-ccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~-~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
|.+|+++||+...+++ . +|++|||+|++||+.+|+||||||||||.++|+|.-. .-.++|+|.++|++..
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence 5689999999999885 6 9999999999999999999999999999999999852 1179999999998732
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHh-cCCCC--CccHHHHHHHHHHhhc---CCCccCC-CCCccCCCcc
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRN---QGSVYAP-SFDHGVGDPV 217 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~--~~~~~~~~~~l~~l~~---~~~~~~~-~LSgGekqRv 217 (313)
.-+.+.+|.+...+ ..++.+.+...... ++... .....++.+.++.++. ..++.+. .||||||+|.
T Consensus 76 ~ERAr~GifLafQ~P~ei~--GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 76 DERARAGIFLAFQYPVEIP--GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred hHHHhcCCEEeecCCccCC--CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 23677788876444 36666666554432 11111 1234556677777773 3567777 8999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChhhHHHHHH----hhcC---eEEEEcChHHHHH------HHH--hhhhccCChhHHH
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS----MFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPDVA 282 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~~~l~~----l~~~---~i~vtHd~~~~~~------rvi--gr~v~~G~~~e~~ 282 (313)
.|...++..+++.++|++=..||-..++.+.+ +.+. .++|||....+.. +++ ||++..|.+ ++.
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 99766666666666666666666544444333 3332 4799999888766 233 999999998 655
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 233 ~~ 234 (251)
T COG0396 233 EE 234 (251)
T ss_pred HH
Confidence 43
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=265.43 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=154.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. ..+|+||||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999996531 238999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgGekq 215 (313)
++.++|++|+++.+. -|+++|+... ...+.+.+.++++..+. +.+..+ ..|||||||
T Consensus 1383 R~~I~iVpQdp~LF~---gTIreNIdp~-------~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFD---GTVRQNVDPF-------LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred HhcceEECCCCcccc---ccHHHHhCcc-------cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence 356999999986543 4999998532 12344566666666552 223333 379999999
Q ss_pred cchhhhhcccC-ccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQ-HKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~-a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|++||||++.+ +++|++||++.-+|.+. .+.|.+.++ .+|+|+|.++.+.. +|+ |++++.|++++++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999985 89999999999999844 444444443 35799999999887 665 9999999999987
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 1533 ~ 1533 (1560)
T PTZ00243 1533 M 1533 (1560)
T ss_pred h
Confidence 5
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=245.65 Aligned_cols=178 Identities=11% Similarity=-0.005 Sum_probs=139.2
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.+|+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ .+.++|
T Consensus 450 ~~i~~~nv~~~~~~~~~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~ 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY 519 (659)
T ss_pred CeEEEEeeEEECCCCCe----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE
Confidence 3699999999995 334 9999999999999999999999999999999999998 9999998865 345999
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcC--CCc---------cCCCCCccCCCcchhhhh
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSV---------YAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--~~~---------~~~~LSgGekqRv~la~a 222 (313)
++|+++. +. .|+++|+.++....+. ......+.+.++++.++.. .++ ....||||||||++||++
T Consensus 520 v~Q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYM-TL--GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCC-CC--cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 9999753 33 3999998765322111 1112345566777777632 111 235899999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++.+++++++|||+..||....+.+.+.+. .+|+|||+++.+..
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKY 644 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHh
Confidence 999999999999999999966655555443 25799999987643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=265.25 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=154.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|++.. .++|+||||+|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 599999999997531 139999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
++.+++++||++.+. -|+++|+... + ..+.+.+.++++..+ .+.+..+ ..|||||||
T Consensus 1359 R~~i~iVpQdp~LF~---gTIr~NLdp~----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFS---GSLRMNLDPF----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred HhcCeEECCCCcccC---ccHHHHcCcc----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 356999999986544 4999998632 1 234455566666544 2334434 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-+|.+. .+.|++.+. .+|+|+|.++.+.. ||+ |++++.|+++++..
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999844 444444443 25799999999988 666 99999999999865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=220.41 Aligned_cols=180 Identities=14% Similarity=0.019 Sum_probs=133.0
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-----------eCCCCCC
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP 149 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-----------~~~~~~~ 149 (313)
.+|+++|++.. .+|+|+|+ +.+|++++|+||||||||||+++|+|+++ |++|+|. ++|.+..
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 47999997642 28999995 99999999999999999999999999999 9999995 6665421
Q ss_pred ----------CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcc
Q 021380 150 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 150 ----------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv 217 (313)
..+++++|... ... .++.+++.+.. ........+.++++.++.. .+..+..||+||+||+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~-~~~--~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVD-LIP--KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV 148 (255)
T ss_pred hhhHHhhhcccceeeecchhc-cCc--hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 12567777632 221 24555554431 1122345677888888743 3567779999999999
Q ss_pred hhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH---HHH---hhhhcc
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHIST 275 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~---rvi---gr~v~~ 275 (313)
+||++++.+++++++|+|+..||.. +.+.+.++.+ .+|++|||++.+.. +++ |++.+.
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~ 219 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAY 219 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcc
Confidence 9999999999999999999999994 4445554433 25799999998875 333 555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=262.74 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=150.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--------------------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-------------------- 136 (313)
-|+++||+++|++++ ..++|+|+||+|++|+++||+||||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999996432 1239999999999999999999999999999999999998 7
Q ss_pred ----------------------------------CCceeeeCCCCC--------CCeEEEEeccCCCCCcccCCcccCHH
Q 021380 137 ----------------------------------QKASSFDSQVKP--------PDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 137 ----------------------------------~~G~i~~~~~~~--------~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
++|+|.++|.+. ++.++||+|+++.+. .|++||+.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~---gTIreNI~ 1317 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN---MSIYENIK 1317 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc---ccHHHHHh
Confidence 699999999763 356999999976543 69999998
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
++. + ....+.+.++++..+ .+.+..+ ..||||||||++||||++.++++|++|+++.-||.
T Consensus 1318 ~g~-----~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1318 FGK-----E-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred cCC-----C-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 752 2 123344554444433 2334443 37999999999999999999999999999999998
Q ss_pred ----hhHHHHHHhh---c-CeEEEEcChHHHHH--HHH--------hhhh-ccCChhHHHH
Q 021380 242 ----GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 283 (313)
Q Consensus 242 ----~~~~~l~~l~---~-~~i~vtHd~~~~~~--rvi--------gr~v-~~G~~~e~~~ 283 (313)
.+.+.|.++. + .+|+|+|.+..+.. +++ |+++ +.|+.++++.
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 3445555552 2 35899999998877 444 3545 7898888764
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=205.19 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=107.6
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
.||+|.|++.. +++++ |++++|++++|+||||||||||+|+|+|+++ |++|+|.++|. .++|++|+..
T Consensus 4 ~~l~~~~~~~~----~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~----~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFF----LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGI----TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEE----EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCE----EEEEEcccCC
Confidence 68999998876 88884 9999999999999999999999999999999 99999999874 3677766411
Q ss_pred CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccC
Q 021380 161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 161 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLD 240 (313)
||||||||+++|++++.+++++++|+|+..||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred hhh----HHHHHHhhc----CeEEEEcChHHHHH
Q 021380 241 GGV----WKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 241 E~~----~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
... .+.+.++.. .+|++|||++.+..
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 844 444444432 25799999998875
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-28 Score=248.11 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=156.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||++.|+.++ .+.+|+|+||+|++|+.+||+||+||||||.+.+|-..+. |++|.|.++|.+.+
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 399999999999775 5569999999999999999999999999999999999999 99999999998743
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekq 215 (313)
+.++.|.|+|..+. -|++||+.++. .. ...+++.+.++... .+-+..++ +|||||||
T Consensus 1063 R~~i~lVsQEP~LF~---~TIrENI~YG~-----~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN---GTIRENIAYGS-----EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc---ccHHHHHhccC-----CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 46999999975443 59999998871 11 23444444444322 34455444 99999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC------eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~------~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.+|++|++||-+.-||-+.-+.+++.+|. .|+|.|-+..+.. .++ |++++.|+-++++.
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999997555555555543 5899999999988 333 99999999888876
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-28 Score=260.63 Aligned_cols=183 Identities=15% Similarity=0.094 Sum_probs=139.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee-CCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~-~~~~~------- 148 (313)
.|+++||++.|++.. ..++|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.+ +|.+.
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 599999999997532 1239999999999999999999999999999999999999 99999999 45442
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhc----------CC-----------------------------------
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----------GA----------------------------------- 182 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~----------~~----------------------------------- 182 (313)
++.++|++|++..+ . .|+.+|+.++.... ..
T Consensus 458 lr~~Ig~V~Q~~~LF-~--~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLF-S--NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHhccEecccccch-h--ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 24599999997543 3 59999998853100 00
Q ss_pred ------CCCccHHHHHHHHHHhhc---------CC----CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh--
Q 021380 183 ------PWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-- 241 (313)
Q Consensus 183 ------~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE-- 241 (313)
......+.+.++++.++. +. ......||||||||++||+|++.++++|++|+++..||.
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 001223445555555441 11 234568999999999999999999999999999999998
Q ss_pred --hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 242 --GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 --~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
.+.+.|.++.. .+|+|||+++.+..
T Consensus 615 e~~i~~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 44555555532 35799999998755
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=247.37 Aligned_cols=202 Identities=15% Similarity=0.136 Sum_probs=176.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
...+.++|++|.|+.... +++++||.|++||+.|+.|+|||||||++++|+|..+ |++|+++++|.+.
T Consensus 562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence 457999999999987643 8999999999999999999999999999999999999 9999999987653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.+||.||.+..+. .+|.+|++.+.++.+|.++....+.+..+++.++ ...+++++.||||+|+|+++|.|+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hhhhhhcccCCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence 234999999975444 5999999999999999887666666888899888 456778899999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.++.++++|+|...+|+ ++|..+.++.+. +|++||.+++++. |+. |+...-|.++++...
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999998 677777777763 5799999999988 665 999999999888743
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-28 Score=239.43 Aligned_cols=175 Identities=14% Similarity=-0.020 Sum_probs=135.0
Q ss_pred eEEEccceeEcccccc-ccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~-~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
.|+++||+++|++... ..++|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 5999999999975311 1238999999999999999999999999999999999999 99999999987632
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCC--------ccCCCCCccCCCcchh
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~LSgGekqRv~l 219 (313)
+.++|++|+++.+. -|+.+|.. +....+.+.++++.++.... .....||||||||++|
T Consensus 414 ~~~~i~~v~q~~~lf~---~ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 414 YRDLFSAIFADFHLFD---DLIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHhhCcEEccChhhhh---hhhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 45899999965433 36666631 12234556677777663221 1235799999999999
Q ss_pred hhhcccCccEEEEcCcccccChhhHHHHHH-----hh--c-CeEEEEcChHHHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSS-----MF--D-EKWFIEVDLDTAMQ 266 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE~~~~~l~~-----l~--~-~~i~vtHd~~~~~~ 266 (313)
|++++.+++++++|+++..||++..+.+.+ +. + .+|+|||+++....
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~ 536 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh
Confidence 999999999999999999999955544422 21 1 35799999987654
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=238.85 Aligned_cols=183 Identities=13% Similarity=0.076 Sum_probs=145.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC-----CCeEEEEeccCCCCCcccC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~~l 167 (313)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +|+|.++|.+. .+.++|++|++..++ .+
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~--~l 114 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP--TL 114 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCc--cC
Confidence 9999999999999999999999999999999999987 64 79999999753 246899999976443 48
Q ss_pred CcccCHHHHHHhcCC---CCCccHHHHHHHHHHhhc--CCCccCC------CCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 168 DAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 168 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~------~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
||+||+.+....+.. ........+.++++.++. ..+..++ .||||||||++||++++.+++++++|+|+
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 999999987765421 112233457788888874 3355554 59999999999999999999999999999
Q ss_pred cccCh----hhHHHHHHhhcC---eEEEEcChH-HHHH---HHH----hhhhccCChhHHHH
Q 021380 237 LFLDG----GVWKDVSSMFDE---KWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 237 llLDE----~~~~~l~~l~~~---~i~vtHd~~-~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
..||. .+++.++++.+. +|+++|++. .+.. +++ |+++..|++.++..
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99999 455555555432 479999985 4443 554 89999999888754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=257.75 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=153.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||+++|+... ..+|+||||+|++|+.+||+|++|||||||+++|.|++ +.+|+|.++|.+.
T Consensus 1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 599999999996421 23999999999999999999999999999999999998 5689999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccCC----CCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~~----~LSgGekq 215 (313)
++.++|++|+++.+. -|+++|+... ...+.+.+.++++.++. +.+..+. .|||||||
T Consensus 1291 R~~is~IpQdp~LF~---GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFS---GTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred HhceEEEeCCCccCc---cCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 356999999986554 4999998532 12345566677776652 2233333 79999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-+|.+ +.+.|++.+. .+|+|+|.++.+.. ||+ |++++.|++.+++.
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999984 4445555443 25799999999887 666 99999999998864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-28 Score=226.15 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=146.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++||++.|.... ++|+||||++.+|+.++|+||+|+||||++|+|..+.. .++|.|.++|++.
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 599999999996433 39999999999999999999999999999999999999 9999999999884
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH-----HHHHHHHHhh---cCCCccCC----CCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR---NQGSVYAP----SFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~---~~~~~~~~----~LSgGekqR 216 (313)
++.||+||||...+. -|+..|+.++ .+..-+++ ++..+-++.- ++-+.+++ .||||||||
T Consensus 611 Rs~IGVVPQDtvLFN---dTI~yNIrya-----k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFN---DTILYNIRYA-----KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHhcCcccCcceeec---ceeeeheeec-----CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 346999999975433 4889998765 23222221 1111222221 22223333 899999999
Q ss_pred chhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
|+||+++...+.++++|+.+.-||- .+...+.+++.. .|+|-|.+..+.. .++ |+++++|+-+|++..
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 9998888888888888888888886 344555556543 6899999998776 222 999999999988764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=221.88 Aligned_cols=196 Identities=15% Similarity=0.088 Sum_probs=153.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------~ 148 (313)
.|.+++++..=.+. ..++|++|||.+.+|+.+|||||||||||||.|+|.|..+ |.+|.|.+||-+ .
T Consensus 334 ~L~Ve~l~~~PPg~--~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPGQ--KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCCC--CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 69999998865442 2459999999999999999999999999999999999999 999999999865 2
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHH---------HHHHHHHhhcCCCccCC----CCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNLRNQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~---------~~~~l~~l~~~~~~~~~----~LSgGekq 215 (313)
.+.+||+|||-.. +. =|+.||+.-+.. ..+.++ +.+++-.+-.+-+..+. .|||||||
T Consensus 409 G~hiGYLPQdVeL-F~--GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 409 GRHIGYLPQDVEL-FD--GTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred ccccCcCccccee-cC--CcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 4679999999543 33 499999864321 122222 23444444445555554 89999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
|+++|+|+-.+++++++|||=.-||+ .+.+.|...... +|+|||-+..+.. +++ |++-..|+.+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999999999999999999998 344444444433 4799999988776 555 8999999999998
Q ss_pred HHHH
Q 021380 283 KWRI 286 (313)
Q Consensus 283 ~~~~ 286 (313)
.+..
T Consensus 560 a~~~ 563 (580)
T COG4618 560 AKVL 563 (580)
T ss_pred HHhc
Confidence 8743
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=192.91 Aligned_cols=185 Identities=17% Similarity=0.121 Sum_probs=143.3
Q ss_pred eEEEccceeEccccc---cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------
Q 021380 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------ 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~---~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------ 147 (313)
.|.++|++|+|--.. -..++|+++||+++.||++++-||+|||||||||+|.|.+. |++|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 588999999993111 13558999999999999999999999999999999999999 999999875432
Q ss_pred ----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCC
Q 021380 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (313)
Q Consensus 148 ----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGek 214 (313)
+.+.+||++|.--..+ ..+..+-+..+....|.+......++..+|.++... ....+.++|||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviP--RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEq 158 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIP--RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQ 158 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhcc--CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchh
Confidence 1245899999733233 356677777777778888777777888999988843 3456679999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----C---eEEEEcChHHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E---KWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~---~i~vtHd~~~~~~ 266 (313)
|||.||+.++.+-.+|++|+|+.-||......+.+++. . .+=|-||.+....
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~ 217 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREA 217 (235)
T ss_pred eehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHH
Confidence 99999999999999999999999999844444444433 2 2456698766543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=253.57 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=147.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-ceeeeCCCCCCCeEEEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~-G~i~~~~~~~~~~i~~v 155 (313)
.|+++|+++.|++.. ..++|+|+||+|++|+.++|+||+|||||||+++|+|+++ |++ |+|.+.+ .++|+
T Consensus 614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~-----~Iayv 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRG-----TVAYV 684 (1622)
T ss_pred ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcC-----eEEEE
Confidence 599999999997421 1238999999999999999999999999999999999999 999 8998744 59999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCCcchhhhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekqRv~la~a 222 (313)
+|+++.+. -|++||+.++.. .+.+++.++++..+ .+.+..++ .||||||||++||||
T Consensus 685 ~Q~p~Lfn---gTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 685 PQVSWIFN---ATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred cCccccCC---CCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 99976543 599999987522 24455555555443 23333333 799999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHH-----HHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+..+++++++|+++.-+|.++-+.+ ..... .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999998544332 22222 35899999988766 555 89999999888753
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-27 Score=253.89 Aligned_cols=208 Identities=14% Similarity=0.062 Sum_probs=154.9
Q ss_pred eEEEccceeEccccc---------cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~---------~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.+..+||++.+.... ....+|+|||+.+++|++++|+|||||||||||++|+|..+. .+.+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence 588999988874211 123499999999999999999999999999999999998751 1368999999865
Q ss_pred C-----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC----ccHHHHHHHHHHhhcC--CCccC-----CCCCc
Q 021380 148 P-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQ--GSVYA-----PSFDH 211 (313)
Q Consensus 148 ~-----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~-----~~LSg 211 (313)
. .+.++|++|++..++ .+||+|++.+....+ .+.. ...+.+.++++.++.. .+..+ ..|||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~--~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSP--QVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CChHHhhhheEEEccccccCC--CCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 3 245899999975443 489999999876543 2211 2233567888888743 34443 58999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHH-HHH---HHH-----hhhhcc
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHIST 275 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~-~~~---rvi-----gr~v~~ 275 (313)
||||||+||++++.++++|++|||+..||. .+++.|+++.+. +|+++|+++. +.. +++ |+++..
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 999999999999999999999999999998 455555555433 5799999974 333 443 577888
Q ss_pred CChh---HHHHHHHHh
Q 021380 276 GKPP---DVAKWRIEY 288 (313)
Q Consensus 276 G~~~---e~~~~~~~~ 288 (313)
|++. .-+..|++.
T Consensus 1103 G~~~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEA 1118 (1470)
T ss_pred CCcccccccHHHHHHh
Confidence 8764 334556665
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=252.78 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=145.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
.|+++|+++.|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++
T Consensus 636 ~i~~~~~~~~~~~~~--~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDL--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEEEc
Confidence 699999999997421 128999999999999999999999999999999999999 9999999986 489999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHH------HHhh---cCC----CccCCCCCccCCCcchhhhhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KNLR---NQG----SVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l------~~l~---~~~----~~~~~~LSgGekqRv~la~al 223 (313)
|++.. ++ .|++||+.++.. .+.++..+++ +.++ .+. ..+...||||||||++||+|+
T Consensus 706 Q~~~l-~~--~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 706 QQAWI-QN--DSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred CCccc-cC--CcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 99754 32 699999987522 1122222222 2222 122 234569999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHHHhh---------cCeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF---------DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~~l~---------~~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
..+++++++|+++.-||.+..+.+.+.+ ..+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999999999995554444322 135799999998776 544 88888998887753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-26 Score=251.38 Aligned_cols=189 Identities=14% Similarity=0.143 Sum_probs=146.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
.|+++|+++.|++.. ..++|+|+||+|++|+.++|+||+|||||||+++|+|+++ |++|.+.. ....++|++
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~Iayv~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGSVAYVP 685 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCcEEEEc
Confidence 599999999997421 1238999999999999999999999999999999999999 99987642 234599999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCCcchhhhhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekqRv~la~al 223 (313)
|+++.+. -|++||+.++. ..+.+++.++++..+ .+.+..++ .||||||||++||||+
T Consensus 686 Q~p~Lf~---gTIreNI~fg~-------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 686 QVSWIFN---ATVRENILFGS-------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred Ccccccc---ccHHHHhhcCC-------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 9976543 59999998762 124455555555443 22333333 7999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHH-----HHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l-----~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
..+++++++|+++.-||.++-+.+ ....+ .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999998544333 22222 35799999988766 554 89999998888753
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-27 Score=238.15 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=129.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
.+.+|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||||+|+|......|++|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCC
Confidence 345899999999998776 999999999999999999999999999999999964100167777643221100
Q ss_pred ------------------CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC-------------------ccHHHHH
Q 021380 150 ------------------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-------------------FNPLLLL 192 (313)
Q Consensus 150 ------------------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~-------------------~~~~~~~ 192 (313)
..+++++|++.... .+..++... ....+.+.. ....++.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~---~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEF---ETETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---ccccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 00111121100000 000000000 000000110 1123445
Q ss_pred HHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHH
Q 021380 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 193 ~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
.+|..++.. .++++.+||||||||++||++++.++++|++|+|+..||....+.+.+++. .+|+||||++.+.
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~ 405 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLN 405 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 556666642 356778999999999999999999999999999999999955555554443 3579999999877
Q ss_pred H---HHH----hhhh-ccCChhH
Q 021380 266 Q---RVL----KRHI-STGKPPD 280 (313)
Q Consensus 266 ~---rvi----gr~v-~~G~~~e 280 (313)
. +++ |++. ..|+..+
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHH
Confidence 6 444 6665 4565543
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-26 Score=191.49 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=107.2
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------Ce
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DV 151 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~~ 151 (313)
++++++.|.+.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+++.... ..
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence 578999998766 9999999999999999999999999999999999999 99999998874321 11
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|++| ||+||+||++++++++.++++++
T Consensus 75 i~~~~q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 75 IGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred eEEEee---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 333332 99999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|+|+..||.. +.+.+.++.. ..+++||+++++..
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999983 4444444433 25799999998764
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-26 Score=230.60 Aligned_cols=170 Identities=14% Similarity=-0.006 Sum_probs=128.6
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-----------eCCCCC-
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP- 148 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-----------~~~~~~- 148 (313)
++++++||++. .+|++++ .+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|.+.
T Consensus 77 ~~~~~~yg~~~---~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 77 EEPVHRYGVNG---FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred cCceEEecCCc---eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHH
Confidence 34899998632 1899999 899999999999999999999999999999 9999997 777542
Q ss_pred ---------CCeEEEEeccCCCCCc-ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCc
Q 021380 149 ---------PDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 216 (313)
Q Consensus 149 ---------~~~i~~v~q~~~~~~~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqR 216 (313)
...+++.+|.....+. ...|+.+++... .....+.++++.++. ..++++.+|||||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 1224555554222111 012666665421 123467788888884 3577888999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++||++++.+++++++|+|+..||.. +.+.|.++.+ .+|+||||++++..
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999993 4444444432 35799999998875
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-26 Score=195.67 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=99.6
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC---CeEEEEeccCCCCCcccCCccc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---~~i~~v~q~~~~~~~~~ltv~e 171 (313)
.+|+|+||+|++|++++|+||||||||||+|+|. +++|++.+++.... ..++|++|
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCcccccccccEEEEhH--------------
Confidence 3899999999999999999999999999999873 46888887654210 01222221
Q ss_pred CHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC--ccEEEEcCcccccChhh---
Q 021380 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGV--- 243 (313)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~--a~~li~d~~~llLDE~~--- 243 (313)
.++++.++.. .+.++.+||+||+||++||++++.+ ++++++|+|+..||...
T Consensus 68 --------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred --------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 3456666632 4667889999999999999999999 99999999999999943
Q ss_pred -HHHHHHhhc---CeEEEEcChHHHH
Q 021380 244 -WKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 244 -~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
.+.+.++.+ .+|++||+++++.
T Consensus 128 l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 128 LLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 344444432 2479999998863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-26 Score=244.63 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=143.7
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCC-----CCeEEEEeccCCCCCcc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~ 165 (313)
..+|+|+|+.|++|++++|+||||||||||||+|+|+++ |+ +|+|.++|.+. .+.++|++|++.+++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~-- 252 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG-- 252 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCC--
Confidence 448999999999999999999999999999999999998 87 99999998653 356899999975544
Q ss_pred cCCcccCHHHHHHhcCCCC----------Cc---------c---------------HHHHHHHHHHhhcCC-------Cc
Q 021380 166 QLDAMEDPKEAHARRGAPW----------TF---------N---------------PLLLLNCLKNLRNQG-------SV 204 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~----------~~---------~---------------~~~~~~~l~~l~~~~-------~~ 204 (313)
.+||.|++.+....++... .+ + ...+..+++.++... +.
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 5899999999765443110 00 0 012355777777432 44
Q ss_pred cCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcCh-HHHHH---HHH---
Q 021380 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL--- 269 (313)
Q Consensus 205 ~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~-~~~~~---rvi--- 269 (313)
.+..|||||||||.||++++.+++++++|+++..||. .+.+.|+++.+ .+|+++|+. +++.. +++
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 6679999999999999999999999999999999999 55556666543 246888985 45544 554
Q ss_pred -hhhhccCChhHHHH
Q 021380 270 -KRHISTGKPPDVAK 283 (313)
Q Consensus 270 -gr~v~~G~~~e~~~ 283 (313)
|+++..|+.+++..
T Consensus 413 ~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 413 EGQIVYQGPRDHILE 427 (1470)
T ss_pred CceEEEeCCHHHHHH
Confidence 89999998877653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-26 Score=243.94 Aligned_cols=188 Identities=12% Similarity=0.028 Sum_probs=142.4
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCceeeeCCCCC-------CCeEEEEeccCCCCCcc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP-------PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-~p~~G~i~~~~~~~-------~~~i~~v~q~~~~~~~~ 165 (313)
..+|+|+|+.+++|++++|+||||||||||||+|+|++... .|++|+|.++|.+. ++.++|++|++..++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~-- 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP-- 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC--
Confidence 34999999999999999999999999999999999986210 17899999998642 234899999975444
Q ss_pred cCCcccCHHHHHHhcCC-------CCCccHHH-HHHHHHHhhcC--CC-----ccCCCCCccCCCcchhhhhcccCccEE
Q 021380 166 QLDAMEDPKEAHARRGA-------PWTFNPLL-LLNCLKNLRNQ--GS-----VYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~-------~~~~~~~~-~~~~l~~l~~~--~~-----~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
.+||.|++.+....+.. ......++ ...+++.++.. .+ ..+..|||||||||+||++++.+++++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 48999999987654321 11111122 34567777743 22 245689999999999999999999999
Q ss_pred EEcCcccccCh----hhHHHHHHhhcC----eEEEEcCh-HHHHH---HHH----hhhhccCChhHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~-~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++|+|+..||. .+.+.|+++.+. +|+++|++ +.+.. +++ |+++..|++.++..
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 99999999999 556666665532 46889996 45544 554 89999998877643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-26 Score=247.77 Aligned_cols=173 Identities=12% Similarity=0.139 Sum_probs=133.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++..+. .|++||+.+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~~~l~~---~Ti~eNI~~ 509 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQTSWIMP---GTIKDNIIF 509 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCCCccCC---ccHHHHHHh
Confidence 8999999999999999999999999999999999999 9999999987 4899999975432 499999987
Q ss_pred HHHhcCCCCCccHHH------HHHHHHHhhcCC----CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH
Q 021380 176 AHARRGAPWTFNPLL------LLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~------~~~~l~~l~~~~----~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~ 245 (313)
+... .. ..... +.+.++.+..+. ..+...||||||||++||+|+..+++++++|+|+..||.+..+
T Consensus 510 g~~~---~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 510 GLSY---DE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred cccc---ch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 6321 10 01111 112222222222 2345699999999999999999999999999999999995555
Q ss_pred HHHH-----hhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 246 DVSS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 246 ~l~~-----l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
.+.+ +.. .+|+|||+++.+.. +++ |+++..|+.+++..
T Consensus 586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 586 EIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4443 222 35799999998765 554 78888888887754
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-24 Score=213.61 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=157.1
Q ss_pred EEEccceeEccccc-cccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----CCCe
Q 021380 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~-~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~~~~ 151 (313)
+..++++....++. ....+|++||..+++||+.||+||+|||||||+++|+|........+|+|.+||.. .++.
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 56667766664431 12339999999999999999999999999999999999996212478999999954 2356
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCC---CCCccHHHHHHHHHHhhcC--CCccCC-----CCCccCCCcchhhh
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP-----SFDHGVGDPVEDDI 221 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~-----~LSgGekqRv~la~ 221 (313)
.+|+.||+..++ .+||+|.+.+.+..+-. ...+..++++++++.++.. .+..++ .+|||||+||+||.
T Consensus 106 s~yV~QdD~l~~--~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 106 SGYVQQDDVLLP--TLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred eEEEcccccccc--cccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 999999986555 59999999998776521 2244556788899998843 455554 69999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHH-HH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTA-MQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~-~~---rvi----gr~v~~G~~~e~~~ 283 (313)
-++.++.+|++|||+..||- .+.+.|+++... +|++-|.+.-- .. +++ |+.+..|.+.+...
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 99999999999999999999 566666666654 34666886533 22 555 99999999866544
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-25 Score=183.59 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=99.1
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------CeEEEEeccCCCCCcccCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~~i~~v~q~~~~~~~~~lt 168 (313)
|+||||+|++|++++|+|+||||||||+++|+|+++ |++|.|.+++.+.. ..++|++|+...+. .+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---cccccccccccccccccccccccccccccccccccc--ccc
Confidence 689999999999999999999999999999999999 99999999986532 35999999944322 466
Q ss_pred cccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccC----CCCCccCCCcchhhhhcccCccEEEEcCcc
Q 021380 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (313)
Q Consensus 169 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~----~~LSgGekqRv~la~al~~~a~~li~d~~~ 236 (313)
+.++ .....+.++++.++.. .+..+ ..||+|||||++||++++.+++++++|+|+
T Consensus 76 v~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 76 VREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 7666 2344567777777732 23444 899999999999999999999998888886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-25 Score=239.50 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=131.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+. ..++|++|++.. ++ .|+.+|+.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~~l-~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQAWI-MN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCCcc-CC--CcHHHHHHc
Confidence 9999999999999999999999999999999999999 999999874 359999999754 32 699999987
Q ss_pred HHHhcC--CCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHH
Q 021380 176 AHARRG--APWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 176 ~~~~~~--~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~ 249 (313)
+..... .........+.+.++.+..+ ...+..+||||||||++||+|+..+++++++|+|+..||.+..+.+.+
T Consensus 744 ~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 744 FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE 823 (1560)
T ss_pred CChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 421000 00000001122333444211 234567999999999999999999999999999999999854333322
Q ss_pred -----hhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 250 -----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 250 -----l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
... .+|++|||++.+.. +++ |++++.|+.+++..
T Consensus 824 ~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 824 ECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 222 35799999999865 554 88888898887653
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-24 Score=223.52 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=154.7
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
....++++|.+++.+.. ...+.|+||||+|++|+.+||+|+-|||||+|+..|.|.++ ..+|+|.++|. ++
T Consensus 515 ~~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----ia 585 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VA 585 (1381)
T ss_pred CCceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EE
Confidence 34579999999998762 23348999999999999999999999999999999999999 99999999885 89
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCccC----CCCCccCCCcchhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGDPVEDD 220 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~~~----~~LSgGekqRv~la 220 (313)
|++|.+..+. -|++||+.|+. .++.++..++++...+ +....+ -+||||||||+++|
T Consensus 586 Yv~Q~pWI~n---gTvreNILFG~-------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 586 YVPQQPWIQN---GTVRENILFGS-------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred EeccccHhhC---CcHHHhhhcCc-------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 9999976544 59999998752 3466777777776552 222233 38999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhHHHHH-----Hhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~~~l~-----~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
||+-.+|++.++|.|+.-+|.++-+.|- .+++ .+|+|||.++.... .++ |++.+.|+.+|+..
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999999999995433333 2332 35899999888776 444 99999999998874
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-24 Score=187.44 Aligned_cols=167 Identities=13% Similarity=0.049 Sum_probs=99.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHH-HHHHHHhcccC-----CCC----ceeeeCC--CCCCCeEEEEeccCCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQK----ASSFDSQ--VKPPDVATVLPMDGFHLY 163 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLl-k~L~Gll~~~~-----p~~----G~i~~~~--~~~~~~i~~v~q~~~~~~ 163 (313)
+|++|||+|++||++||+|+||||||||+ ..|...-+..+ +.. |.+.... ........+..+++....
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSR 89 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCC
Confidence 99999999999999999999999999996 44332100000 000 0010000 000112233444433222
Q ss_pred cccCCccc---CHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCc
Q 021380 164 LSQLDAME---DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGN 235 (313)
Q Consensus 164 ~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~ 235 (313)
++..++.. ...+....+ .. .......+.++.++.. .+.++.+|||||+||++||++++.++ +++++|+|
T Consensus 90 ~~~~~v~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 90 NPRSTVGTVTEIYDYLRLLF--AR-VGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCccHHHHHHHHHHHHHHh--hh-hhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22223221 111111111 11 1122235677887742 46788899999999999999999887 69999999
Q ss_pred ccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 236 YLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 236 ~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+..||.. +.+.+.++.+ .+|++|||++++.
T Consensus 167 t~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~ 203 (226)
T cd03270 167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR 203 (226)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH
Confidence 9999994 4444444432 2579999998763
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-24 Score=201.05 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=145.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.+.+.+|++.|.... ++|+++||+++.|+.++|+|++|+||||++++|...+. +++|.|.++|++.
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 478999999997543 39999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHH--------HHHHHHHHhhcCCCccCC----CCCccCCCc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL--------LLLNCLKNLRNQGSVYAP----SFDHGVGDP 216 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~--------~~~~~l~~l~~~~~~~~~----~LSgGekqR 216 (313)
++.||.+|||... ++ -|...|+.++ .+..-+.+ .+...++.+-.+.+..++ .||||||||
T Consensus 336 R~aIg~VPQDtvL-FN--Dti~yni~yg-----r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqr 407 (497)
T COG5265 336 RRAIGIVPQDTVL-FN--DTIAYNIKYG-----RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQR 407 (497)
T ss_pred HHHhCcCccccee-hh--hhHHHHHhcc-----CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHH
Confidence 3459999999643 33 3666666554 22211111 112222233233444444 899999999
Q ss_pred chhhhhcccCccEEEEcCcccccChhhHHHHHHhhc------CeEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
|+||++++.+|+++++|+-+.-||-+.-+.+...++ ..++|-|-+..+.. .++ |+++++|+-.+++..
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 999888888888888888888888754444444333 25899999998776 444 999999998888764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=197.89 Aligned_cols=179 Identities=17% Similarity=0.103 Sum_probs=138.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
+-|+|.++|+++.|.+.+ .++++++|-|..++.+++|||||+|||||||++.|.+. |..|.|.-.... .++
T Consensus 386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~---~~~ 456 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHN---KLP 456 (614)
T ss_pred CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccc---cch
Confidence 457999999999998764 28899999999999999999999999999999999999 999998654322 244
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
++.|.......-+.++.+++ ...+ +.....+.++.+|.++|.. ...++.+||+|||.||.+|+.+...+.+|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~---~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFM---MPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred hhhhhhHhhcCcchhHHHHH---HHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 55555322111122333332 2222 2234567788999999954 45677799999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
++|+|+..||-+.++.+.+.+.+ +|+||||..++.+
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 99999999999777777776653 5799999988776
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-24 Score=223.94 Aligned_cols=193 Identities=18% Similarity=0.206 Sum_probs=157.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
-|+++|++.+|.... ..+|+||||+|++||.|||+|..|||||||+..|-.+.. |.+|+|.+||.+.
T Consensus 1138 ~I~f~~~~~RYrp~l--p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNL--PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCC--cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 599999999997642 239999999999999999999999999999999999999 9999999999873
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccCC----CCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~LSgGekq 215 (313)
+.+++++|||+..+. =|++.|+.-.. .+..+.+-+.|+..+ .+.+..+. .+|-||||
T Consensus 1213 RsrlsIIPQdPvLFs---GTvR~NLDPf~-------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFS---GTVRFNLDPFD-------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred HhcCeeeCCCCceec---CccccccCccc-------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence 456999999987554 38998875432 233444555555543 23444433 89999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
.+++|||++.+.++|++||.+.-.|.+ +.+.|++.++. ++.|-|.++.+.. ||+ |++++.|+|.+++.
T Consensus 1283 LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999999999994 45556666654 4688999999998 777 99999999999876
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
+
T Consensus 1363 ~ 1363 (1381)
T KOG0054|consen 1363 D 1363 (1381)
T ss_pred C
Confidence 5
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=173.64 Aligned_cols=190 Identities=17% Similarity=0.130 Sum_probs=138.1
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
.+++++||...- -|-.+|.++..||++-+|||||||||||+-.++|++ |.+|+|.++|.+..
T Consensus 2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATE 69 (248)
T ss_pred ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhH
Confidence 367888887553 356789999999999999999999999999999999 89999999998732
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcc-
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG- 224 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~- 224 (313)
+.-+|+.|.... ...|.|+.++.+. .|.+.....+.++...++ +...+.+.+|||||-|||-+|..+.
T Consensus 70 LArhRAYLsQqq~p--~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 70 LARHRAYLSQQQTP--PFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHHHHHHHhhccCC--cchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 234677777432 2247777766542 333333344556666665 3445677799999999999976543
Q ss_pred ------cCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 225 ------LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 225 ------~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+.+++++.|+|..-||- .+-..+.+++.. +||.+||++..++ ++. |+.+..|..+|+...
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 35677888888888886 233344455554 4799999998877 333 888889998887644
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=175.53 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=106.8
Q ss_pred cc-cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------ceeeeCCCCC-----CCeEEEEeccCC
Q 021380 96 PT-SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---------ASSFDSQVKP-----PDVATVLPMDGF 160 (313)
Q Consensus 96 iL-~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---------G~i~~~~~~~-----~~~i~~v~q~~~ 160 (313)
-+ ++++|++.+| +++|+||||||||||+++|+|+++ +.. |++.+.+.+. ...+++++|++.
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~ 86 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD 86 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence 34 6789999999 999999999999999999999986 442 3566665542 356899999854
Q ss_pred CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcc----cCccEEEEcCcc
Q 021380 161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNY 236 (313)
Q Consensus 161 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~ 236 (313)
.++ . .. ..+++.++++. ....+..+..||+|||||++++++++ .+++++++|+|+
T Consensus 87 ~~~----~-------------~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 87 GRY----S-------------II---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred Cce----e-------------EE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 321 0 00 12345566666 44456677899999999999999986 466999999999
Q ss_pred cccChh----hHHHHHHhhc--CeEEEEcChHHHH
Q 021380 237 LFLDGG----VWKDVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 237 llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~ 265 (313)
..||+. +.+.+.++.+ .+|++|||++.+.
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 999984 4444444432 2579999998763
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-21 Score=179.74 Aligned_cols=178 Identities=18% Similarity=0.163 Sum_probs=125.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~------ 150 (313)
-|+++|+.+.|.+.. .-+..||++|++||+|.|+|.||||||||+++|.|+.+ |++|+|.++|++...
T Consensus 322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHHH
Confidence 599999999998753 15789999999999999999999999999999999999 999999999986421
Q ss_pred --eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-------CCccCCCCCccCCCcchhhh
Q 021380 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 151 --~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~~~~LSgGekqRv~la~ 221 (313)
.+.-||-| +++++ ...+.......+.+...|+++... .....-.||.|||+|+++-.
T Consensus 396 R~LfSavFsD-yhLF~-------------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~ 461 (546)
T COG4615 396 RKLFSAVFSD-YHLFD-------------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLL 461 (546)
T ss_pred HHHHHHHhhh-HhhhH-------------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHH
Confidence 12334444 22221 122222223455666777776622 12233389999999999988
Q ss_pred hcccCccEEEEcCcccccCh--------hhHHHHHHhhcCeEEEEcChHHHHH--HHH----hhhhc
Q 021380 222 LVGLQHKVVIVDGNYLFLDG--------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIS 274 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE--------~~~~~l~~l~~~~i~vtHd~~~~~~--rvi----gr~v~ 274 (313)
|++..-.++++|+.-.=-|+ ..+..+++.-+.++.||||-.--.. |++ |++++
T Consensus 462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 87777777777777766666 3444455555556799999553222 555 77775
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-21 Score=180.73 Aligned_cols=180 Identities=16% Similarity=0.128 Sum_probs=137.9
Q ss_pred ccCCCCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC
Q 021380 70 SQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (313)
Q Consensus 70 ~~~~~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~ 149 (313)
+....-|+|-+.+|++.|.+.. +++..++|-|.--..|+|+||||.||||||++|.|-+. |+.|+..-+..
T Consensus 579 p~~L~PPvLGlH~VtFgy~gqk---pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnhr--- 649 (807)
T KOG0066|consen 579 PTKLNPPVLGLHDVTFGYPGQK---PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNHR--- 649 (807)
T ss_pred CCCCCCCeeecccccccCCCCC---chhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccce---
Confidence 3333557999999999995433 28899999999999999999999999999999999999 99998876543
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhccc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~ 225 (313)
-+||++.|... ..++..+..... .+.+..| .+.++..|..+|+. ...++..|||||+.||++|..-+.
T Consensus 650 L~iG~FdQh~~----E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 650 LRIGWFDQHAN----EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALG 721 (807)
T ss_pred eeeechhhhhH----HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcC
Confidence 24888888732 235555554333 2333333 45677888888843 345788999999999999888888
Q ss_pred CccEEEEcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~ 266 (313)
.+++||+|+|+.-||-+.++.|.+.+ ..+|+||||..++.+
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 89999999999999986555555444 347899999877665
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=169.48 Aligned_cols=176 Identities=9% Similarity=0.063 Sum_probs=119.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCCC-C--------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQV-K-------- 147 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~~-~-------- 147 (313)
|.++|. +.|.+.. ++.+ +. +.+++|+||||||||||+++|++++. +. .|++.+.+. +
T Consensus 6 ~~~~~f-~~~~~~~----~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~ 72 (251)
T cd03273 6 IILDGF-KSYATRT----VISG----FD-PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQA 72 (251)
T ss_pred EEEeCc-cccCcCE----eecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCC
Confidence 566776 6666543 3222 22 56999999999999999999999997 65 356665443 1
Q ss_pred --CCCeEEEEeccCCC-------CCcccCCcccCHHHHHHhcC-C-CCCccHHHHHHHHHHhhcCC--------------
Q 021380 148 --PPDVATVLPMDGFH-------LYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG-------------- 202 (313)
Q Consensus 148 --~~~~i~~v~q~~~~-------~~~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~-------------- 202 (313)
....+++++|++.. ...+.+++.+++........ . ......+.+.++|+.++...
T Consensus 73 ~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~ 152 (251)
T cd03273 73 GITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITK 152 (251)
T ss_pred CCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHH
Confidence 12368889998421 11235788887755322111 1 12234467788888887431
Q ss_pred --------CccCCCCCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHH
Q 021380 203 --------SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 203 --------~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+.++.+||+||+||+++|++++ .+++++++|+|+..||. .+++.+.++... +|++||+.+..
T Consensus 153 ~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~ 232 (251)
T cd03273 153 VLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMF 232 (251)
T ss_pred HHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 2467799999999999999987 57899999999999998 444555554433 57999996555
Q ss_pred HH
Q 021380 265 MQ 266 (313)
Q Consensus 265 ~~ 266 (313)
..
T Consensus 233 ~~ 234 (251)
T cd03273 233 NN 234 (251)
T ss_pred Hh
Confidence 43
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-20 Score=168.44 Aligned_cols=163 Identities=14% Similarity=0.074 Sum_probs=106.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHH-----HHhcc--cCCCCce-----------eeeCCCCCCC----e--
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQKAS-----------SFDSQVKPPD----V-- 151 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~-----Gll~~--~~p~~G~-----------i~~~~~~~~~----~-- 151 (313)
.|+|||++|+.|.+++|.|++|||||||++.+. ..+.. ..|..++ |.++..+..+ .
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 799999999999999999999999999998663 11110 0022222 2333222100 0
Q ss_pred ----------------------------EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--
Q 021380 152 ----------------------------ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-- 201 (313)
Q Consensus 152 ----------------------------i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-- 201 (313)
+.|..++... ...+|+.|++.+..... ...+..++|+.++..
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~--v~~ltv~e~~~~~~~~~------~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIAD--VLDMTVEEALEFFENIP------KIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHH--HhcCCHHHHHHHHHhhh------hHHHHHHHHHHcCCchh
Confidence 1111111110 12356666665554322 124456777888743
Q ss_pred -CCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 202 -GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 202 -~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
.++++.+|||||+||+.||++++.+ ++++++|+|+..||.. +++.+.++.+ .+|++|||++++..
T Consensus 162 ~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 4677889999999999999999985 6999999999999993 4444444433 25799999998754
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=157.29 Aligned_cols=187 Identities=23% Similarity=0.309 Sum_probs=136.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
++||.|+||||||||++.|.+++. +..+ ...+.++++|+++..... ..+ ... ...++.|..++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~---------~~~v~vi~~D~f~~~~~~--~~~-~~~-~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD---------HPNVELITTDGFLYPNKE--LIE-RGL-MDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC---------CCcEEEEecCcccCcHHH--HHH-hhh-hhcCCCcccCCH
Confidence 589999999999999999999996 4211 112677999987654321 111 111 123556778888
Q ss_pred HHHHHHHHHhhc-CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh-hhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~-~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE-~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|..+.. .....+|.||.....|+.-......+++++++||.+++.|+ .-|..+.++++..||++-|.+++..
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~ 144 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEK 144 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHH
Confidence 888889998887 45778899999988887654444567899999999999985 5567789999999999999998765
Q ss_pred HHHhh----------hhc------cCChhH----HHHHHHHhcCCchH-HHHHhhcCCCCEEeccC
Q 021380 267 RVLKR----------HIS------TGKPPD----VAKWRIEYNDRPNA-ELIMKSKKNADLVIKSI 311 (313)
Q Consensus 267 rvigr----------~v~------~G~~~e----~~~~~~~~~~~~~~-~~i~~~~~~aD~i~~~~ 311 (313)
|++.| ... .|-+.+ .+...|++.++|+. +||.|++..||+||+..
T Consensus 145 rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 145 WYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 44422 221 343222 23445778999999 59999999999999864
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-20 Score=165.86 Aligned_cols=172 Identities=10% Similarity=0.027 Sum_probs=98.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcc-------------cCCCCc-----
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-------------IWPQKA----- 139 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~-------------~~p~~G----- 139 (313)
|+++|. |+|++.. ++++++ |++++|+||||||||||+++|++++.. ..+.+|
T Consensus 4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 556654 4676665 788776 789999999999999999999966420 003344
Q ss_pred ---eeeeCCCC-----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc-----cHHHHHHHHHHhhc
Q 021380 140 ---SSFDSQVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-----NPLLLLNCLKNLRN 200 (313)
Q Consensus 140 ---~i~~~~~~-----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~l~~ 200 (313)
++.+++.+ ..+.++++++.. .++....+..+. .......+..... ...++.+++.. ..
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~-~l~~~~~t~~ei-~~~l~~~gl~~~~~~~~~~qg~i~~l~~l-~~ 150 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEY-FLDKKNVTKNDV-MNLLESAGFSRSNPYYIVPQGKINSLTNM-KQ 150 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEE-EECCeEcCHHHH-HHHHHHcCCCCCCCcEEEEcCchHHhhhc-cc
Confidence 33333211 011244444332 111112233222 2222222322110 01122222211 12
Q ss_pred CCCccCCCCCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhc-Ce-EEEEcChH
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD-EK-WFIEVDLD 262 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~-~~-i~vtHd~~ 262 (313)
..+.++..|||||+||++||++++ .++.++++|+|+..||. .+++.+.++.+ .. |++||+.+
T Consensus 151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~ 222 (243)
T cd03272 151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE 222 (243)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 235677799999999999999996 35899999999999999 44455555543 23 45566644
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-19 Score=152.15 Aligned_cols=183 Identities=28% Similarity=0.397 Sum_probs=145.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
+.-+|||.|++||||||+.+.|.-.++ . ..+..++||+|+......+..++ ....+..|.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---~-------------~~~~~I~~D~YYk~~~~~~~~~~---~~~n~d~p~A 67 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG---V-------------EKVVVISLDDYYKDQSHLPFEER---NKINYDHPEA 67 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC---c-------------CcceEeeccccccchhhcCHhhc---CCcCccChhh
Confidence 457999999999999999999999996 1 13678999988765443333222 1234667888
Q ss_pred ccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHH
Q 021380 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
++.+.+.+.|..+..+.....|.||.-+..|.. -..-..+.++++++|-+++.| +.++++++-.|||.-|.+...
T Consensus 68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~Rl 142 (218)
T COG0572 68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRL 142 (218)
T ss_pred hcHHHHHHHHHHHHcCCcccccccchhcccccC-CccccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHHH
Confidence 899999999999988888888888887777763 122445689999999999999 588889999999999999888
Q ss_pred HHHHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 266 QRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 266 ~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.|.+-|++. +|...+-+..+|...++|+++ ||+|+++.||+|++...
T Consensus 143 iRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 143 IRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecCC
Confidence 877766665 787666666667778899988 99999999999998753
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-19 Score=173.94 Aligned_cols=174 Identities=14% Similarity=0.002 Sum_probs=131.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
...|+++||+..-++.. ..|++++|+|++|+.+-|.|+||||||||+|.|+|+-+ --+|+|..-. ...+.|
T Consensus 390 ~~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~---~~~~lf 460 (604)
T COG4178 390 DHGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPA---DSALLF 460 (604)
T ss_pred cceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCC---CCceEE
Confidence 35799999999987643 38999999999999999999999999999999999997 6778887642 234789
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--------CCccCCCCCccCCCcchhhhhcccC
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
+||.+|. +. -|.+|-+.++.. ......+.+.++|..++.+ .+.--..||+|||||+++|+.+.+.
T Consensus 461 lpQ~PY~-p~--GtLre~l~YP~~----~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 461 LPQRPYL-PQ--GTLREALCYPNA----APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred ecCCCCC-CC--ccHHHHHhCCCC----CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence 9999753 32 266665554321 1125667778888887732 1222339999999999999999999
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcC------eEEEEcChHHH
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE------KWFIEVDLDTA 264 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~------~i~vtHd~~~~ 264 (313)
|+.+++||-+.-|||+....+.+++++ +|.|.|-....
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 999999999999999555555444432 46788876554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-20 Score=170.69 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=121.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
..+++..+++|.||+.. |.-=.=+|..||++|++||||-|||||.++|+|.++ |++|. . ..-.++|
T Consensus 340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~-~-----~~~~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS-E-----EDLKVSY 405 (591)
T ss_pred ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC-C-----ccceEee
Confidence 34677888888888753 333344678899999999999999999999999999 99997 1 1223677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
=||--. +....||.+.+.-..... .. +...-.++++.+. ...++.+..|||||.|||+||.+|+.+|++.++
T Consensus 406 KPQyI~--~~~~gtV~~~l~~~~~~~-~~---~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYll 479 (591)
T COG1245 406 KPQYIS--PDYDGTVEDLLRSAIRSA-FG---SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL 479 (591)
T ss_pred cceeec--CCCCCcHHHHHHHhhhhh-cc---cchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEe
Confidence 776522 222467776554332210 11 1111234555554 345788999999999999999999999999999
Q ss_pred cCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 233 DGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 233 d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|+|-..||-+ +-+.|+.... ..++|.||+-++..
T Consensus 480 DEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 480 DEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred cCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 9999999973 2333333332 24799999877654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-19 Score=169.33 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=122.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
-|.+.+++..||++. +|.+-++++..|..+||+|+||+|||||||+|+.-.-..+|..-++. .-++.
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~---------g~~t~ 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVR---------GDDTE 146 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhee---------ccchH
Confidence 478889999999988 99999999999999999999999999999999871100012111111 11111
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH-HHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
-.... ...++.+.+ |...-.........+.+.. +|.-+|.. ..+++..||||.|.|++||+|+..+|++|++
T Consensus 147 ~~~~~-l~~D~~~~d---fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 147 ALQSV-LESDTERLD---FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred HHhhh-hhccHHHHH---HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 11000 001111111 1111100111112222333 67777733 3567789999999999999999999999999
Q ss_pred cCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH---HHH---hhhh--ccCChhHHHH
Q 021380 233 DGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL---KRHI--STGKPPDVAK 283 (313)
Q Consensus 233 d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi---gr~v--~~G~~~e~~~ 283 (313)
|+|+..||-.....|..++.. .++||||...+.. -|| ++.+ ..|+-+++..
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999998766666666543 5799999888765 444 3222 3566555443
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=154.03 Aligned_cols=209 Identities=13% Similarity=0.184 Sum_probs=149.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCCceeeeCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQVK------ 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~-p~~G~i~~~~~~------ 147 (313)
|+.|.+.|++..+....+.+++++++|+++++||+-|++|.+|||||-..|.|+|..+..| -+.....+++.+
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 6788999999999766566779999999999999999999999999999999999986333 223334455433
Q ss_pred ------CCCeEEEEeccCCCCCcccCCccc----CHHHHHHhcCC---CCCccHHHHHHHHHHhhcCCC-----ccCCCC
Q 021380 148 ------PPDVATVLPMDGFHLYLSQLDAME----DPKEAHARRGA---PWTFNPLLLLNCLKNLRNQGS-----VYAPSF 209 (313)
Q Consensus 148 ------~~~~i~~v~q~~~~~~~~~ltv~e----~l~~~~~~~~~---~~~~~~~~~~~~l~~l~~~~~-----~~~~~L 209 (313)
..+.++++||++....++..++-. |+-... +.|. ...+...++.++|.++|...+ .++.+|
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wT-fkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~El 159 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWT-YKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYEL 159 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCcccc-ccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchh
Confidence 123478899997655443323221 111100 0010 012345667889999995443 356699
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc---C-eEEEEcChHHHHH---HH--H--hhhhc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD---E-KWFIEVDLDTAMQ---RV--L--KRHIS 274 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~---~-~i~vtHd~~~~~~---rv--i--gr~v~ 274 (313)
--||-|+|.||.|++..+++|+.|+|+.-+++-. ...+..+.. . +++++||+..+.+ ++ + |+.++
T Consensus 160 TeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred ccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999833 333333322 2 4699999999887 22 1 89999
Q ss_pred cCChhHHHHH
Q 021380 275 TGKPPDVAKW 284 (313)
Q Consensus 275 ~G~~~e~~~~ 284 (313)
.+..+++++.
T Consensus 240 Sa~~e~l~~~ 249 (330)
T COG4170 240 SAPSEELVTM 249 (330)
T ss_pred ccchhHHhcC
Confidence 9988888764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-19 Score=170.80 Aligned_cols=192 Identities=15% Similarity=0.066 Sum_probs=126.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
-+.++|+++.|.+.. +++|++|++.+|+.+||+|+|||||||+|++|.|-.. |..-.+. +.+
T Consensus 75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~d-----------~y~ 136 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHID-----------FYL 136 (614)
T ss_pred cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCcccc-----------hhh
Confidence 589999999999888 9999999999999999999999999999999999987 6433222 111
Q ss_pred ccCCCCCcccCCcccCHH-----------HHHHhcCC--------------------CCCccHHHHHHHHHHhh---cCC
Q 021380 157 MDGFHLYLSQLDAMEDPK-----------EAHARRGA--------------------PWTFNPLLLLNCLKNLR---NQG 202 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~-----------~~~~~~~~--------------------~~~~~~~~~~~~l~~l~---~~~ 202 (313)
.+....+. ..++.+.+. .....+.. .......++..+|..++ ...
T Consensus 137 ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 137 LSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred hcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 11111111 111111111 11111100 00011122233333333 234
Q ss_pred CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh---cC--eEEEEcChHHHHH---HHH----h
Q 021380 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---DE--KWFIEVDLDTAMQ---RVL----K 270 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~---~~--~i~vtHd~~~~~~---rvi----g 270 (313)
++.+..||||+++|++||+++...+.+|++|+|+..||-+....|.+++ +. .++++|+.+.+-. .|+ +
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheeccc
Confidence 5678899999999999999999999999999999999996666666554 33 4699999999877 555 4
Q ss_pred hhh-ccCChhHHHHHHHH
Q 021380 271 RHI-STGKPPDVAKWRIE 287 (313)
Q Consensus 271 r~v-~~G~~~e~~~~~~~ 287 (313)
+.+ ..|+-+..+..+-+
T Consensus 296 kl~~y~Gnydqy~~tr~E 313 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVKTRSE 313 (614)
T ss_pred ceeeecCCHHHHhhHHHH
Confidence 433 45666555443333
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=186.25 Aligned_cols=210 Identities=12% Similarity=0.016 Sum_probs=156.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 151 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~ 151 (313)
+.-..|+.+....+.+...+|+||+=-+.+|-..||+|+|||||||||++|+|.... .-.+|+|.++|.+. ++.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccc
Confidence 455556655552222334499999999999999999999999999999999998641 14578999999764 367
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCC---CccHHHHHHHHHHhhcC--CCccCC----CCCccCCCcchhhhh
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDIL 222 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~l~~l~~~--~~~~~~----~LSgGekqRv~la~a 222 (313)
+||+.|++.+.+ .+||+|-+.+.+.++.... .+..+.++++++.+++. .+.-++ -||..||+|+.|+.-
T Consensus 866 ~GYvqQ~DiH~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 866 SGYVEQQDIHSP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cceeecccccCc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 999999988765 5999999999887763222 22235577888888754 454454 499999999999999
Q ss_pred cccCc-cEEEEcCcccccCh----hhHHHHHHhhcCe--EE-EEcChHHH-HH---HHH-----hhhhccCChhHH---H
Q 021380 223 VGLQH-KVVIVDGNYLFLDG----GVWKDVSSMFDEK--WF-IEVDLDTA-MQ---RVL-----KRHISTGKPPDV---A 282 (313)
Q Consensus 223 l~~~a-~~li~d~~~llLDE----~~~~~l~~l~~~~--i~-vtHd~~~~-~~---rvi-----gr~v~~G~~~e~---~ 282 (313)
|+.+| .+|.+|||+.+||- .+.+.++++.+.+ |+ .-|.+.-. .+ |++ |+.|..|+..+- +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 98888 88899999999998 5667777777653 54 44775532 22 555 899988876663 3
Q ss_pred HHHHHhc
Q 021380 283 KWRIEYN 289 (313)
Q Consensus 283 ~~~~~~~ 289 (313)
..|++..
T Consensus 1024 i~YFes~ 1030 (1391)
T KOG0065|consen 1024 IEYFESI 1030 (1391)
T ss_pred HHHHHhc
Confidence 4566643
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-19 Score=158.03 Aligned_cols=165 Identities=12% Similarity=0.029 Sum_probs=105.7
Q ss_pred eEEEccceeEccccccccccccccceeec-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC-------CCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-------QVKP 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~-~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~-------~~~~ 148 (313)
-|+++|+. .|.+. .+|+|... +|++++|+||||||||||+++|++.+-. +..+....+ ....
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 37888988 66443 24566544 5899999999999999999999965421 333333321 1122
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHH--HHHHh--hcCCCccCCCCCccCCCcchhhhhcc
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNL--RNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--~l~~l--~~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
...+++++|+.... .++..+. +. +.+.+.+ .+... ....+.++..||+||+||++++++++
T Consensus 75 ~~~v~~~f~~~~~~----~~~~r~~-------gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 75 TAEVSFTFQLGGKK----YRVERSR-------GL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred cEEEEEEEEECCeE----EEEEEec-------CC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 34578888875321 2222221 22 1122211 11211 23346678899999999999999997
Q ss_pred c----------CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 225 L----------QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~----------~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
. +++++++|+|+..+|.. +.+.+.++.+ .+|++|||++.+..
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 4 46899999999999984 3444444433 25799999987754
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=158.09 Aligned_cols=192 Identities=20% Similarity=0.326 Sum_probs=139.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
+...++||.||||||||||+++|.+++.. +|++|. +.++.+|+++.... ..+... ....++.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~-----------V~vi~~D~f~~~~~---~l~~~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRK-----------VELITTDGFLHPNQ---VLKERN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCc-----------eEEEecccccccHH---HHHHcC-CccccCCCh
Confidence 45679999999999999999999999962 244443 45678887765432 111111 113456788
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh------hhHHHHHHhhcCeEEE
Q 021380 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFI 257 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE------~~~~~l~~l~~~~i~v 257 (313)
.++...+.+.+..+..+.. ..+|.||.....++.-......+++++++||.+++.++ ..+..+.+++|..|||
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iyv 203 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 203 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEE
Confidence 8888888888888887654 78889998887777654445578999999999988654 4577788999999999
Q ss_pred EcChHHHHHHHHhhhh-----c-----------cCChh-H---HHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 258 EVDLDTAMQRVLKRHI-----S-----------TGKPP-D---VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 258 tHd~~~~~~rvigr~v-----~-----------~G~~~-e---~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.-|.+.+.+|.+.|.. . .|-+. + ...+.|+....++.. ||+|++.+||+|++...
T Consensus 204 Da~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 204 DAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred ECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 9999988875553321 1 02222 2 234568888999985 99999999999998654
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=149.12 Aligned_cols=185 Identities=23% Similarity=0.334 Sum_probs=138.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCcc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 187 (313)
-+|||.|++|||||||.+.|...+. -..| ...+.++++|+|+.....+... ......++.|..++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~~---------~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHCG---------PVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhcC---------CCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence 5899999999999999999987663 1111 1225678899876543222211 11223567788888
Q ss_pred HHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHH
Q 021380 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 267 (313)
Q Consensus 188 ~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~r 267 (313)
.+.+.+.|..+..+....+|.|+.....|..-. ....+..++++||.+++.++ .+.++++..||++.+.++...|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~-~~i~p~~ViIvEGi~~l~~~----~l~~l~D~~ifvd~~~d~~~~R 143 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTA-VTMTPKSVLIVEGILLFTNA----ELRNEMDCLIFVDTPLDICLIR 143 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCce-EEeCCCcEEEEechhhhCCH----HHHHhCCEEEEEeCChhHHHHH
Confidence 888988888888777778888887766665422 23456799999999998784 6777888899999999999988
Q ss_pred HHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 268 VLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 268 vigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.+.|++. +|.+.+-+...|...+.+++. ||.|++..||+|++...
T Consensus 144 r~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 144 RAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 8888876 788888777767776666665 99999999999998653
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-20 Score=164.52 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=104.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|+++|.. .|++.. ++++++| +++||+||||||||||+++|.-.+. .+.... ..+.++++++
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~------~~~~i~~~~~ 66 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM------RQKKLSDLIH 66 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh------hhhhHHHHhc
Confidence 6778876 888777 8999987 7999999999999999999985442 110000 1123566666
Q ss_pred cCCCCCcccCCcccCHHHHHHh--------cCCCCCccHH--HHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhccc
Q 021380 158 DGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPL--LLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.....+ .+++.+...+.... ++........ ...++++.++ ...++++..||+||+||+++|++++.
T Consensus 67 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~ 144 (212)
T cd03274 67 NSAGHP--NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL 144 (212)
T ss_pred CCCCCC--CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh
Confidence 543222 35555554443221 2222111000 0022223333 33455677999999999999999863
Q ss_pred ----CccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHH
Q 021380 226 ----QHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 226 ----~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+++++++|+|+..||.. +++.+.++.+. +|++||+.+..
T Consensus 145 ~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~ 193 (212)
T cd03274 145 HHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMF 193 (212)
T ss_pred cccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHH
Confidence 57999999999999984 44444444332 47999996543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-19 Score=169.81 Aligned_cols=190 Identities=18% Similarity=0.181 Sum_probs=147.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
+.++++++|++..- .++|+||++.+|||+||.|-=|||+|-|++.|.|..+ +.+|+|.++|++..
T Consensus 260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP 328 (500)
T ss_pred CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence 35678899887542 4789999999999999999999999999999999888 89999999997532
Q ss_pred -----CeEEEEeccCCC-CCcccCCcccCHHHHHH-h-cC---CCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCC
Q 021380 150 -----DVATVLPMDGFH-LYLSQLDAMEDPKEAHA-R-RG---APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -----~~i~~v~q~~~~-~~~~~ltv~e~l~~~~~-~-~~---~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekq 215 (313)
.-++|++.|.-. -....+++.+|+.+... . .. .......+.+.++.+.+. ...+..+..||||.||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 248999988421 11124789999887621 1 11 112222334556666666 3456788899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhc
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+|.||++++.++++|++|+|+-..|- ++++.|.++.+. +|++|-+++++.. |++ ||++.
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999998 777777777766 4699999999987 766 77775
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-18 Score=165.67 Aligned_cols=183 Identities=13% Similarity=-0.013 Sum_probs=123.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|++++|+..-+.. +..+++|+||+|..|+-+.|.||||||||.|+|+|+|+-+ ..+|++..-.....+.+.|+
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceEEe
Confidence 589999999988653 2337789999999999999999999999999999999986 68999876543333558899
Q ss_pred eccCCCCCcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhc--------CCC----c-cCCCCCccCCCcchhhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRN--------QGS----V-YAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~--------~~~----~-~~~~LSgGekqRv~la~ 221 (313)
||-+|... =|.++.+-++... .......+.+.+...|+.++. +.+ . -...||+||+||+++|+
T Consensus 507 PQrPYmt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 507 PQRPYMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred cCCCCccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHH
Confidence 99976433 2778877776321 111222344555566655542 122 1 23499999999999955
Q ss_pred hcccCccEEEEcCcccccChhhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+.+.|+.-++|+.+.-+||++-..+-+.+.+ .|-|+|-..+..-
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 55555555555555555555444444444432 3567787766544
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=145.44 Aligned_cols=191 Identities=38% Similarity=0.630 Sum_probs=141.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
.+..++||+||||||||||++.|+++++ ++.|.+.+ .+..|+++.+...+. .+ .. ....+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v----------~i~~D~~~~~~~~~~--~~-g~-~~~~~~~~ 93 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAI----------QVPMDGFHLDNAVLD--AH-GL-RPRKGAPE 93 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceE----------EEecccccCCHHHHH--hc-cc-ccccCCCC
Confidence 5678999999999999999999999998 77776432 055665543321100 00 00 01123455
Q ss_pred CccHHHHHHHHHHhhcCC-CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHH
Q 021380 185 TFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 263 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~-~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~ 263 (313)
.++...+.+++..+.... ....+.++......+.-...+....++++.|+.++++++..+..+...++.++++.-+.+.
T Consensus 94 ~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~ 173 (229)
T PRK09270 94 TFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEV 173 (229)
T ss_pred CCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHH
Confidence 566777777777777554 5666777777766554322333357899999999999988888888999999999999999
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 264 AMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 264 ~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
..+|+..|....|...+.+...+.....++.+|+.+.+..||+||++..
T Consensus 174 ~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 174 LRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecC
Confidence 8888888877788887777777877788888999999999999998863
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-18 Score=174.67 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=72.4
Q ss_pred HHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhc---CeEEE
Q 021380 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~---~~i~v 257 (313)
..+.|+.++.. .++++.+|||||+||+.||++++.++ .++++|+|+..||. .+++.|.++.+ .+|+|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566777743 46778899999999999999999988 99999999999999 34445555443 25799
Q ss_pred EcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 258 tHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
|||++++.. +++ |++++.|+++++..
T Consensus 890 tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 890 EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999998765 443 57888899888754
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-17 Score=140.84 Aligned_cols=178 Identities=24% Similarity=0.354 Sum_probs=128.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
++||+||||||||||+++|.+++. ...+.++++|.++.. ++..+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----------------~~~~~v~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----------------NPKVVIISQDSYYKD---LSHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----------------CCCeEEEEecccccc---cccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999883 112567888876533 2333322222223445556666
Q ss_pred HHHHHHHHHhhcCCC--ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 189 LLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~--~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.|..+..... .+...+|.|++++..+ ...++.+++.|+++++.++ .+.+.++..|+|..+.+....
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~ 134 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLI 134 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHH
Confidence 777778887775443 3444778888776554 4567889999999998874 455667888999999998777
Q ss_pred HHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 267 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
|.+.|.. .+|...+.....|.....+++. |+.+.+..||+|+++.+
T Consensus 135 R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 135 RRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 7776765 5676666556777777777776 89999999999998753
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-18 Score=149.53 Aligned_cols=143 Identities=13% Similarity=0.015 Sum_probs=96.4
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHH----HHhcccCCCCceeeeC-----CCCCCCeEEEEeccCC-CCC--cccCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSFDS-----QVKPPDVATVLPMDGF-HLY--LSQLDA 169 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~----Gll~~~~p~~G~i~~~-----~~~~~~~i~~v~q~~~-~~~--~~~ltv 169 (313)
+++.+| +++|+||||||||||+++|. |... |++|.+..+ .......+++++|+.. ..+ ...+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 455566 99999999999999999996 6555 777755311 1123346888888752 111 112355
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCc------chhhhhcccCccEEEEcCcccccChhh
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGGV 243 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqR------v~la~al~~~a~~li~d~~~llLDE~~ 243 (313)
++++.+. + ...+.+.+ +..+..||+||+|| ++++++++.+++++++|+|+..||+..
T Consensus 94 ~~~~~~~------~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~ 156 (204)
T cd03240 94 LENVIFC------H----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN 156 (204)
T ss_pred hhceeee------c----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH
Confidence 5555331 1 12222222 56778999999996 678889999999999999999999844
Q ss_pred H-----HHHHHhhc----CeEEEEcChHHHH
Q 021380 244 W-----KDVSSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 244 ~-----~~l~~l~~----~~i~vtHd~~~~~ 265 (313)
. +.+.++.+ .+|++||+++.+.
T Consensus 157 ~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 157 IEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 3 44444433 2479999988764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-18 Score=160.50 Aligned_cols=179 Identities=12% Similarity=0.038 Sum_probs=136.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
.-|.|++.+|++.|..... ..+.+++++++--..++++|+||+||||++|++.|.+. |.+|.+.+.+ +.+++
T Consensus 359 ~~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~ 430 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIK 430 (582)
T ss_pred CCCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceec
Confidence 4578999999999965431 38899999999999999999999999999999999998 9999987764 34589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC---CccCCCCCccCCCcchhhhhcccCccEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~LSgGekqRv~la~al~~~a~~l 230 (313)
|.+|....+.. +.+.. +.+.... .|.. ..+.++..|..||... ...+..||||||-||++|.....+|.+|
T Consensus 431 ~f~Qhhvd~l~--~~v~~-vd~~~~~--~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlL 504 (582)
T KOG0062|consen 431 YFAQHHVDFLD--KNVNA-VDFMEKS--FPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLL 504 (582)
T ss_pred chhHhhhhHHH--HHhHH-HHHHHHh--CCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEE
Confidence 99987433221 22211 1222222 2222 4567888999999443 3457799999999999999999999999
Q ss_pred EEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 231 IVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 231 i~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
++|+|+.-||-+.++.|.+.+. .+|+||||.+++..
T Consensus 505 VLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 505 VLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred EecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 9999999999866665555443 46899999999876
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=141.72 Aligned_cols=185 Identities=13% Similarity=-0.027 Sum_probs=127.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD---- 150 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~---- 150 (313)
...|++.++.+.|.... +++-|+|++++.|....++|.||||||||||+|+|-.- ...|.|.+.|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSL 84 (291)
T ss_pred cceEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccc
Confidence 34699999999997543 48999999999999999999999999999999999765 555888888865322
Q ss_pred ----eEEEEeccCCCC--CcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcc
Q 021380 151 ----VATVLPMDGFHL--YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 151 ----~i~~v~q~~~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~ 224 (313)
...|+-..-... ........-.+.....+++... .+.++-..++..+.....-..+.+|-|||+||.|+.-++
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL 163 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL 163 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc
Confidence 122222210000 0000011111111112233222 122444566666666677788899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
.+-++|++|+-++=||- .+++.+++.++. +++.||-.+=...
T Consensus 164 ~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~ 213 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET 213 (291)
T ss_pred cceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh
Confidence 99999999999998887 555666655543 5799999887776
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-17 Score=141.98 Aligned_cols=183 Identities=25% Similarity=0.366 Sum_probs=128.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
++|+++||+||||||||||++.|+++++ + ..++++++|.++.....+...+. ....++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---K-------------LEIVIISQDNYYKDQSHLEMAER---KKTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---c-------------cCCeEecccccccChhhCCHHHh---cCCCCCCcc
Confidence 6899999999999999999999999986 3 12577888876543221111111 111223344
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHH
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
.++...+.+.+..+..+....++.++.....+.. ......+..+++.|+.++++++ .+.+.++..|+++.+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~----~~~~~~d~~I~v~~~~~~~ 139 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDE----RLRDLMDLKIFVDTPLDIR 139 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchH----hHHHhCCEEEEEECChhHH
Confidence 5556667777777776666666666554333321 1122345788999998888763 4667788889999999998
Q ss_pred HHHHHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 265 MQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
..|++.|... .|...+...+.|....+++.. |+.+.+..||+|+++.
T Consensus 140 l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~ 188 (207)
T TIGR00235 140 LIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEG 188 (207)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCC
Confidence 8888877654 677667666677777888876 8999999999999853
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-18 Score=147.22 Aligned_cols=185 Identities=31% Similarity=0.480 Sum_probs=128.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHH--HHhcCCCCCc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF 186 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~--~~~~~~~~~~ 186 (313)
+|||.||+|||||||.+.|...+. . .|.- ....+.++..|.++... ...+.-... ...++.|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~-~~~~------~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~ 67 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---K-RGIP------AMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF 67 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---T-CTTT------CCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---c-cCcC------ccceeEEEeeccccccc---chhhHhhccccccCCCCcccc
Confidence 699999999999999999999996 2 1100 00125667777654221 111100000 0123345667
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
+.+.+.+.|..+..+.....+.|+.....+.. ...+..+..+++.||.++++|+. +.++++..||+..+.++.+.
T Consensus 68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~ 142 (194)
T PF00485_consen 68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLE 142 (194)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHH
Confidence 78888888888887777777877777776665 23345678999999999999964 78889999999999999988
Q ss_pred HHHhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 267 RVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 267 rvigr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
|.+.|++. +|...+-+.++|. .++++++ ||.|++..||+||++.+
T Consensus 143 Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 143 RRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred HHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 88888775 7887776666677 6666666 99999999999999865
|
7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=154.79 Aligned_cols=201 Identities=16% Similarity=0.130 Sum_probs=153.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-C---
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-P--- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-~--- 149 (313)
+.++|++++|+..-... ...+++|||+|..|||+||.|-.|-|-+.|+..|+|+.+ +.+|+|.++|.+. .
T Consensus 254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence 45699999999876542 128999999999999999999999999999999999998 8889999999764 1
Q ss_pred ------CeEEEEeccCCC-CCcccCCcccCHHHHHHhcC-------CCCCccHHHHHHHHHHhh---cCCCccCCCCCcc
Q 021380 150 ------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRG-------APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHG 212 (313)
Q Consensus 150 ------~~i~~v~q~~~~-~~~~~ltv~e~l~~~~~~~~-------~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgG 212 (313)
.-++|+|.|..- -.-..+++.+|+.+...... .........+.++++.+. .....+...||||
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 248999998632 12235899999877544321 011122334566677776 2345567799999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCCh
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 278 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~ 278 (313)
.+||+-+|+-+...+++|+...|+-.||-. +.+.|.+..+. ++++|-|+++++. |+. ||++...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 999999999999999999999999999984 44444455444 4699999999988 544 887766655
Q ss_pred hH
Q 021380 279 PD 280 (313)
Q Consensus 279 ~e 280 (313)
.+
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 54
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=141.45 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=99.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-----ce----eeeCCCCCCCeEEEEeccCCCCCccc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~-----G~----i~~~~~~~~~~i~~v~q~~~~~~~~~ 166 (313)
.++++++++.+| +.+|+||||||||||+..|...+. ... |. +.-.|. ....+.+.+++.- .+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~-~~~~i~~~~~~~~-~~--- 81 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGE-SSAKITVTLKNQG-LD--- 81 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCC-CeEEEEEEEEcCC-cc---
Confidence 456677788877 779999999999999999986654 221 21 111111 1233555555522 11
Q ss_pred CCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc----ccCccEEEEcCcccccCh-
Q 021380 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al----~~~a~~li~d~~~llLDE- 241 (313)
+| .........+.++++. ....+.++..||+|||||++|++++ +.+++++++|+|+..+|.
T Consensus 82 ----~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 82 ----AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 11 0111123456666666 4455678889999999999999998 589999999999999999
Q ss_pred ---hhHHHHHHhhc------CeEEEEcChHHHHH
Q 021380 242 ---GVWKDVSSMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ---~~~~~l~~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+.|.++.. .++++||+++.+..
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 35555655532 13588899998876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=138.04 Aligned_cols=201 Identities=43% Similarity=0.683 Sum_probs=171.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
+..+.+|+.|+.|+||||++..+..-. |..-. .+ +...-...-++|+|+|++....+..+++.......+|.|+
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aW----p~~~~-~f-~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw 190 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAW----PVNVN-KF-AQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW 190 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhc----chhhh-hh-hhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCc
Confidence 456799999999999999999988754 32200 01 1111112234899999998888888999888888999999
Q ss_pred CccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 185 TFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+++...+..+++.+. ...+.++|.+..|-...+.--..+....+++|+++++++||++.|+.+-++++...++.-|.+
T Consensus 191 TFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~ 270 (323)
T KOG2702|consen 191 TFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYE 270 (323)
T ss_pred ccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHH
Confidence 999999999999888 567889999999999999887788888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccC--ChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccC
Q 021380 263 TAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 263 ~~~~rvigr~v~~G--~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 311 (313)
.+++||..|.+..| .+.+...+++.++++++-++|..+.-.+|+|++..
T Consensus 271 ~a~~RVa~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~ 321 (323)
T KOG2702|consen 271 AAEERVAKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIR 321 (323)
T ss_pred HHHHHHHHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhh
Confidence 99999999999999 88899999999999999999999999999998754
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-17 Score=147.55 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=103.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------C--
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P-- 148 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-------~-- 148 (313)
|+++|. +.|.+.. .+ ...++ +++|+||||||||||+++|.+++. +..|++...+.. .
T Consensus 4 i~l~nf-~~~~~~~----~~-----~~~~~-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 4 LELENF-KSYKGRH----VI-----GPFDR-FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEECc-cccCCCe----ee-----cCCCC-eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCcccc
Confidence 677776 6675432 22 23344 999999999999999999999997 777766443210 0
Q ss_pred ----CCeEEEEecc--CCCCCcccCCcccCHHHHHHhcCC-CCCccHHHHHHHHHHhhcCC-------------------
Q 021380 149 ----PDVATVLPMD--GFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG------------------- 202 (313)
Q Consensus 149 ----~~~i~~v~q~--~~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~------------------- 202 (313)
...+.+.++. +.+... ..++.+... .+.. ........+.++++.++...
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~-~~~~~~~~~----~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~ 144 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTF-RRIITGGSS----SYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKN 144 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEE-EEEEECCce----EEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhcc
Confidence 1123333332 111000 011111100 0000 11223445566777766421
Q ss_pred -----CccCCCCCccCCCcchhhhhccc----CccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHH
Q 021380 203 -----SVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 203 -----~~~~~~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
+.++.+||+||+||++|+++++. +++++++|+|+..||.. +.+.|.++.+ .+|+||||.+...
T Consensus 145 p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~ 223 (247)
T cd03275 145 PPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS 223 (247)
T ss_pred CcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh
Confidence 12346999999999999999975 48999999999999983 4555555544 2579999977654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=135.49 Aligned_cols=181 Identities=25% Similarity=0.382 Sum_probs=126.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
.++.+|+|.|+||||||||++.|++.+. ...+.++++|.++.....++..+. ....++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----------------~~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----------------DESIAVIPQDSYYKDQSHLSFEER---VKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----------------CCceEEEeCCccccCcccCCHHHh---cccCccCcc
Confidence 4688999999999999999999999884 123778999977554322222111 112234455
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCC--CccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~L--SgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
.++.+.+.+.|..+..+.....+.+ +.+.+..-. ....+..+++.|+.+++.++ .+.++++..|+++-+.+
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~---~~~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~ 137 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET---IRVEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLD 137 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCCe---EEeCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChh
Confidence 6677777788887775544444444 343322111 11244678999999988763 55677888999999999
Q ss_pred HHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 263 TAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 263 ~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
+...|++.|.. ..|...+.+.++|.....+.++ |+.|.+..||+||++.
T Consensus 138 ~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 138 IRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 98888887765 4577666666777777777776 9999999999999864
|
|
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=144.42 Aligned_cols=192 Identities=24% Similarity=0.332 Sum_probs=140.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
...-+|||.|+.|||||||++.|..++. ... ....+.++++|+|+.++..+. +. -....+|.|.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~---~~~---------~~~~v~vi~~DdFy~~~~~l~--~~--~l~~~kg~Pe 147 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS---RWP---------EHPKVELVTTDGFLYPNAVLE--ER--GLMKRKGFPE 147 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hhC---------CCCceEEEeccccccCHHHHh--hh--hccccCCCcc
Confidence 3456999999999999999999999885 210 112477899999876653322 10 0112467888
Q ss_pred CccHHHHHHHHHHhhcCCC-ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh--hHHHHHHhhcCeEEEEcCh
Q 021380 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~-~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~--~~~~l~~l~~~~i~vtHd~ 261 (313)
++|.+.+.+.|..+..+.. ..+|.||.-...++.-......+++++|+||.+++.++. .+..+.++++..|||.-|.
T Consensus 148 s~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~ 227 (311)
T PRK05439 148 SYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADE 227 (311)
T ss_pred cccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCH
Confidence 8999999999999987664 778888877777664333445678999999998886654 4677899999999999999
Q ss_pred HHHHHHHHhhhhc----------------cCChhH----HHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 262 DTAMQRVLKRHIS----------------TGKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rvigr~v~----------------~G~~~e----~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
+.+.+|.+.|.+. .|-+.+ .+...|...+.||.+ ||.|++.+||+|++...
T Consensus 228 ~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~ 299 (311)
T PRK05439 228 DLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGA 299 (311)
T ss_pred HHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCC
Confidence 9887755533321 232222 445567889999995 99999999999998643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-17 Score=175.47 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=69.9
Q ss_pred HHHHHhhcC---CCccCCCCCccCCCcchhhhhcc---cCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEc
Q 021380 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 193 ~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~---~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtH 259 (313)
++|+.++.. .++++.+|||||+||++||++++ .+++++++|+|+..||.. +++.|.++.+. +|+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 567777743 46778899999999999999997 589999999999999983 44444444332 579999
Q ss_pred ChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 260 DLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 260 d~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
|++++.. +++ |++++.|+++++..
T Consensus 871 dl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 871 NMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9998833 333 47788899888754
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=165.47 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=68.2
Q ss_pred HHHHHHHhhcC---CCccCCCCCccCCCcchhhhhccc---CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEE
Q 021380 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 257 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~---~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~v 257 (313)
..++|+.++.. .++++.+|||||+||+.||++++. ++.++++|+|+..||. .+++.+.++.+ .+|++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566666643 466788999999999999999986 4899999999999999 34455555543 25799
Q ss_pred EcChHHHHH--HHH----------hhhhccCChhHH
Q 021380 258 EVDLDTAMQ--RVL----------KRHISTGKPPDV 281 (313)
Q Consensus 258 tHd~~~~~~--rvi----------gr~v~~G~~~e~ 281 (313)
+||++++.. +++ |++++.|+++++
T Consensus 888 ~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999998755 443 467777877654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-16 Score=150.18 Aligned_cols=173 Identities=23% Similarity=0.336 Sum_probs=123.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
.--+|||.||||||||||++.|++++ |.. +.+++|+++.... . ....+..+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL----p~v--------------gvIsmDdy~~~~~---~------i~~nfD~P~a 116 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM----PSI--------------AVISMDNYNDSSR---I------IDGNFDDPRL 116 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC----CCc--------------EEEEEcceecchh---h------hCccCCChhh
Confidence 34699999999999999999999987 433 4455555421110 0 0012233444
Q ss_pred ccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHH
Q 021380 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~ 265 (313)
.+...+.+.|..+..+....++.|+.-...|..-......+++++|+||.+++.+ .+.+++|..|||+.|.+..+
T Consensus 117 ~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkIFVDtdvDirL 191 (656)
T PLN02318 117 TDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFDL 191 (656)
T ss_pred cchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEEEEcCCccHHH
Confidence 4555666777777777667777777666666532222356789999999999863 68888999999997777666
Q ss_pred H-HHHhhhhccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEecc
Q 021380 266 Q-RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 266 ~-rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 310 (313)
. |++.+..++|...+-+..+|...++|+++ ||.|.+..||+||++
T Consensus 192 ~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 192 VKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 6 44455567787777666778888899988 999999999999955
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-16 Score=144.57 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=113.1
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhccc-----CCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-----WPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~-----~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv 169 (313)
.+|+|+||+|++|++++|+|+|||||||++++|+|..... -|++|.|.+-.... .+.++-..-..+. ..|+
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~---~a~iPge~Ep~f~-~~ti 472 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---SALIPGEYEPEFG-EVTI 472 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch---hhccCcccccccC-chhH
Confidence 4899999999999999999999999999999999986522 27888887633221 2334433111111 1222
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC----CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG---- 241 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE---- 241 (313)
.+. .+.. .-|...+.++|...|... ..+..+||-|||.|+.||.+++..|.+++.|+-...|||
T Consensus 473 leh------l~s~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 473 LEH------LRSK--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred HHH------Hhhc--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 222 2222 224455678888888432 346679999999999999999999999999999999999
Q ss_pred hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 242 GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
.+...+.++.. ..+.+||..+...+
T Consensus 545 rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 34444445543 24699999988755
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-16 Score=150.64 Aligned_cols=166 Identities=13% Similarity=0.005 Sum_probs=113.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEec
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q 157 (313)
|.++|+-.--+... .++..++|.|++|--+.|+||||||||.|+|+|.|+-+ -..|...+ +++..+.|+||
T Consensus 482 I~lenIpvItP~~~---vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~---P~~~~mFYIPQ 552 (728)
T KOG0064|consen 482 IILENIPVITPAGD---VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSI---PRPNNIFYIPQ 552 (728)
T ss_pred eEEecCceeccCcc---eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeec---CCCcceEeccC
Confidence 77788876665432 26799999999999999999999999999999999986 55565544 24456999999
Q ss_pred cCCCCCcccCCcccCHHHHH-----HhcCCCCCccHHHHHHHHHHhhc--------CCC--cc-CCCCCccCCCcchhhh
Q 021380 158 DGFHLYLSQLDAMEDPKEAH-----ARRGAPWTFNPLLLLNCLKNLRN--------QGS--VY-APSFDHGVGDPVEDDI 221 (313)
Q Consensus 158 ~~~~~~~~~ltv~e~l~~~~-----~~~~~~~~~~~~~~~~~l~~l~~--------~~~--~~-~~~LSgGekqRv~la~ 221 (313)
-++.- . =|.+|.+-++. ..+|.. .+.+..+|..+.. +.+ .. ...||||||||+++
T Consensus 553 RPYms-~--gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m-- 623 (728)
T KOG0064|consen 553 RPYMS-G--GTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM-- 623 (728)
T ss_pred CCccC-c--CcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH--
Confidence 97643 1 25666655532 122222 2334444444331 111 12 23899999999999
Q ss_pred hcccCccEEEEcCcccccCh-------hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE-------~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
||++.+.|.+.+||| ++-..+-+..+ ..+-|||.+..-..
T Consensus 624 -----ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 624 -----ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred -----HHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 899999999999999 33333333333 23588999887765
|
|
| >PLN02348 phosphoribulokinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=133.72 Aligned_cols=190 Identities=21% Similarity=0.269 Sum_probs=128.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC-----CCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~-----~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~ 181 (313)
.-+|||.|++|||||||++.|...+.. .+.-..+|. .....+.++++|+|+.... ..+.... ....
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~----~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr--~~r~~~g---~t~l 119 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFGG----AAKPPKGGNPDSNTLISDTTTVICLDDYHSLDR--TGRKEKG---VTAL 119 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhh----ccCCCccccccccccccCceEEEEcccccCCCh--hhHhhcC---CccC
Confidence 459999999999999999999999851 111001111 1123467899998865431 1111000 0011
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.|...+.+.+.+.+..+..+.....|.|+.-...+.. ...+.+++++|.|+.+.+.|+ .+.++++..|||+.+.
T Consensus 120 dP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~~~ 193 (395)
T PLN02348 120 DPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDISD 193 (395)
T ss_pred CcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCc----cccccCcEEEEEECCH
Confidence 2344556667788888877666666655544433322 113456899999999999995 6677888899999999
Q ss_pred HHHHHHHHhhhhc-cCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccC
Q 021380 262 DTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 262 ~~~~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 311 (313)
+....|.+.|+++ +|...+.+.+++.........||.|.+..||+||+-.
T Consensus 194 dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 194 DVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred HHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 9988888888875 7877777777777654444559999999999999765
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=150.38 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=138.5
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCeEEEEeccCCCCCcccCCc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~~ltv 169 (313)
.+|+|+|+-+++|+.+.++||.|||||||++.|+|.+....-..|+|.++|.+. ++.++|++|++.+.+ +|||
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p--~lTV 206 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFP--ELTV 206 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccc--eeEE
Confidence 489999999999999999999999999999999999863334467899999763 356899999987766 5999
Q ss_pred ccCHHHHHHhcCCCCCc----cHH----HHHHHHHHhhcC-------CCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 170 MEDPKEAHARRGAPWTF----NPL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~----~~~----~~~~~l~~l~~~-------~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
+|-+.|..+..+..... ..+ ....+++.+|+. .+..+.-.|||||+||.++.+++.+++++..|+
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999988766542111 122 234677777742 344566899999999999999999999999999
Q ss_pred cccccCh----hhHHHHHHhhc---CeEEEE--cChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 235 NYLFLDG----GVWKDVSSMFD---EKWFIE--VDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 235 ~~llLDE----~~~~~l~~l~~---~~i~vt--Hd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
..-.||- ++.+.++.+.+ ...+|+ .-.+++.. .++ |+.+..|+.++++.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999998 44444444433 333333 22333332 333 99999998777654
|
|
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=122.72 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=129.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH---HhcCC--C
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P 183 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~---~~~~~--~ 183 (313)
++||.|++||||||+.+.|...+. . . ...+.++.+|.|+.+. ..+-.+...... ..+.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~-~----------g~~v~vI~~D~yyr~~-r~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---R-E----------GIHPAVVEGDSFHRYE-RMEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---h-c----------CCceEEEeccccccCC-chhHHHHHHHHhhcCCCCCCCCc
Confidence 589999999999999999998885 1 1 1236789999876532 222222211111 23445 6
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCc------------cCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh
Q 021380 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSg------------GekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~ 251 (313)
.+.+.+.+.+.+..++.+.....+.|.. |....-. .+..++.+++.||-+.++. --...+++++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~~-~~~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGVV-TEGYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCcccc-cccHHHHHhC
Confidence 7778888899999998776666665533 4333111 1235699999999873322 0015788889
Q ss_pred cCeEEEEcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 252 DEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~~i~vtHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
|-.|+|.-|.++...|.+.|++ ++|...|-+...|.+.. |++. ||.|++..||++++..+
T Consensus 142 DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p 203 (277)
T cd02029 142 DLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRVP 203 (277)
T ss_pred CeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEeccC
Confidence 9999999999988877777777 48998887777777777 7766 99999999999998654
|
PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-15 Score=141.75 Aligned_cols=177 Identities=18% Similarity=0.126 Sum_probs=106.4
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee----CCCCCCCeEEEEec
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD----SQVKPPDVATVLPM 157 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~----~~~~~~~~i~~v~q 157 (313)
++..+||...- .|..+- ...+|.++||+|+||-||||.+|+|+|.+. |.-|+..- +... ...-|---|
T Consensus 79 e~vHRYg~NgF---kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi-~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVNGF---KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVI-KRFRGTELQ 150 (591)
T ss_pred cceeeccCCce---EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHH-HHhhhhHHH
Confidence 45778875321 122111 246899999999999999999999999999 88776421 1000 000000001
Q ss_pred cCCC-CCcccCCcc---cCHHHH-HHhcCCC----CCc-cHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhccc
Q 021380 158 DGFH-LYLSQLDAM---EDPKEA-HARRGAP----WTF-NPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 158 ~~~~-~~~~~ltv~---e~l~~~-~~~~~~~----~~~-~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
+.|. +....+.+. +.+... ....|.- ++. ....+.++.+.++ ...++.+.+|||||-||++||.+++.
T Consensus 151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~r 230 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLR 230 (591)
T ss_pred HHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhc
Confidence 1000 000000000 001110 0111100 000 1123455666666 34678899999999999999999999
Q ss_pred CccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 226 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 226 ~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|++.++|++..-||- ..-..++++.. .+++|.||+..+..
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 9999999999999997 45556666664 36799999987654
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=123.67 Aligned_cols=175 Identities=23% Similarity=0.335 Sum_probs=110.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
++||+|+||||||||++.|+++++ +..|. ++.+|+++... ..+ ........-.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~-------------vi~~Dd~~~~~----~~~-r~~~g~~~~~p~~~~~ 59 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVT-------------VICLDDYHSLD----RKG-RKETGITALDPRANNF 59 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceE-------------EEECcccccCC----HHH-HHHhhcccccccchhH
Confidence 589999999999999999999997 55433 34455432211 000 0000000001222223
Q ss_pred HHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHH
Q 021380 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 268 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rv 268 (313)
..+.+.++.+..+.....+.++.-...... .....+.++++.|+.+++.++ .+.++++..|+++.+.+....|.
T Consensus 60 d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~----~l~~~~D~~I~vd~~~e~r~~r~ 133 (273)
T cd02026 60 DLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDE----RVRELLDFSVYLDISDEVKFAWK 133 (273)
T ss_pred HHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCch----hhhhhccEEEEEECChhHHHHHH
Confidence 344455555655444444444433322111 011234689999999988873 66778898999999999887787
Q ss_pred Hhhhhc-cCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 269 LKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 269 igr~v~-~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
+.|.+. +|...+-+.+.+... .+.++ ||.|.+..||+||+..
T Consensus 134 i~Rd~~rrG~s~e~v~~~i~~r-~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 134 IQRDMAERGHSLEDVLASIEAR-KPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred HHHHHHHhCCCHHHHHHHHHhh-chhHHHHhccccccCcEEEEcc
Confidence 878776 576666666666654 45555 9999999999999754
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=121.21 Aligned_cols=185 Identities=29% Similarity=0.433 Sum_probs=150.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
-...-+|||.|+-|+||||+.+.+.-++. .||.+ ..+..+++|+|++++..+. .++ .+..+|.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~~-----------~~v~lvpmDGFhy~n~~L~-~~g---lm~rKGfP 142 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLS-RWPES-----------PKVDLVTMDGFHYPNAVLD-ERG---LMARKGFP 142 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHh-hCCCC-----------CceEEEeccccccCHhHhh-hcc---ccccCCCC
Confidence 34567999999999999999999999996 22321 2478899999988764433 111 23567899
Q ss_pred CCccHHHHHHHHHHhh-cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 184 WTFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~-~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
..+|...+.+.+..+. ...+..+|.||.-....+.-+..+...++++|++|+.+++|++-+-.+.+.+|-.|||.-|.+
T Consensus 143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~ 222 (283)
T COG1072 143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEE 222 (283)
T ss_pred ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHH
Confidence 9999999999999998 455688999999998888888888999999999999999999888889999999999999999
Q ss_pred HHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCC
Q 021380 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNA 304 (313)
Q Consensus 263 ~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~a 304 (313)
.+.+|++.|....|.........+-.++.++.+........+
T Consensus 223 ~le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~a~~~a~~ 264 (283)
T COG1072 223 LLEERYIERFLKFGLTAFEDPASYFHNYAPLSEREAIESARA 264 (283)
T ss_pred HHHHHHHHHHHhcccchhhChhhHhhccCcchHHHHHHhhhh
Confidence 999999999999888888777777777777776444433333
|
|
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-13 Score=115.78 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=115.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|...+. . .| ..+.++.+|+|+.+. ... .. ....++.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~---~-~~----------~~~~~i~~Ddf~~~~--~~~--~~--~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR---V-NG----------IGPVVISLDDYYVPR--KTP--RD--EDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---H-cC----------CCEEEEehhhcccCc--ccc--cc--cCCCCCCCccccH
Confidence 589999999999999999999985 1 11 236778999876543 110 00 0012222333466
Q ss_pred HHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHH-HHHH
Q 021380 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQR 267 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~-~~~r 267 (313)
+.+.+.+..+..+.....+.++.-..++..-......+..+++.|+.+++.+ .+.++++..||++-+.++ .+.|
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r 135 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR 135 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence 6777777777765555566555444444331112345688999999999754 567778888999999997 6666
Q ss_pred HHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEecc
Q 021380 268 VLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 268 vigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 310 (313)
.+-|++ ++|...+-+.+++. ...+.+. |+.|.+..||+|+.+
T Consensus 136 ri~RD~~~rg~~~~~~i~~~~-~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 136 RVVRDIQFRGYSAELTILMWP-SVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred HHHHhHHhhCCCHHHHhhhcc-cccCchhhcCCCchhccceeccC
Confidence 666666 57877666655543 4444554 567899999999863
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). |
| >PRK07429 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=122.43 Aligned_cols=174 Identities=23% Similarity=0.349 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcC----
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~---- 181 (313)
+--++||.|+||||||||++.|++++. +.. +.++.+|+++.... .. ....+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~-------------~~vi~~Dd~~~~~~--~~-------r~~~g~~~l 61 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG---EEL-------------VTVICTDDYHSYDR--KQ-------RKELGITAL 61 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc---cCc-------------eEEEEecccccCCH--HH-------HHhcCCccc
Confidence 345899999999999999999999997 543 34455665432110 00 01111
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCC--CCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEc
Q 021380 182 APWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEV 259 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~--~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtH 259 (313)
.+...+...+.+.++.+..+.....+ ..+.|+.... ....+.++++.|+.+.+.++ .+.++++..||++-
T Consensus 62 ~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~----~~i~p~~iVIvEG~~~l~~~----~lr~~~D~~I~Vda 133 (327)
T PRK07429 62 DPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP----EYIEPNKIVVVEGLHPLYDE----RVRELYDFKVYLDP 133 (327)
T ss_pred CccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc----EecCCCcEEEEechhhcCcH----hHHhhCCEEEEEEC
Confidence 12233445566666766655544444 3444433211 11234689999999988873 66778899999999
Q ss_pred ChHHHHHHHHhhhhc-cCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 260 DLDTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 260 d~~~~~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
+.++...|.+.|... +|...+.+..++.........||.|.+..||+||+..+
T Consensus 134 ~~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 134 PEEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcCC
Confidence 999888888877776 57766666666766544444599999999999998764
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-14 Score=121.71 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=82.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+++|++|+. |++++|+||||||||||+|+|+|...- ...|. .... -.+++|.. .++ ..+++.+++.+
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l--~~~G~------~v~a-~~~~~q~~-~l~-~~~~~~d~l~~ 82 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL--AQAGA------PVCA-SSFELPPV-KIF-TSIRVSDDLRD 82 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------EEec-CccCcccc-eEE-Eeccchhcccc
Confidence 778887776 699999999999999999999997730 11221 1111 12345532 222 24788898876
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH-----HHHHh
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK-----DVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~-----~l~~l 250 (313)
....+ .....++.++++.++. ..++++++|+++..+|..... .+..+
T Consensus 83 ~~s~~----~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l 134 (199)
T cd03283 83 GISYF----YAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFL 134 (199)
T ss_pred ccChH----HHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHH
Confidence 43211 1122445566666541 348999999999999983222 23333
Q ss_pred hc---CeEEEEcChHHHHH
Q 021380 251 FD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 251 ~~---~~i~vtHd~~~~~~ 266 (313)
.+ .+|++|||++++..
T Consensus 135 ~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 135 KNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHCCCEEEEEcCcHHHHHh
Confidence 32 24799999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-14 Score=130.96 Aligned_cols=174 Identities=16% Similarity=0.055 Sum_probs=108.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
-|.++|.+.+-.++. ++.+.|+.|-.|..+||+||||-||||||+.|+..--++ |..=.|. ++.
T Consensus 264 DIKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaI-PpnIDvL-----------lCE 327 (807)
T KOG0066|consen 264 DIKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAI-PPNIDVL-----------LCE 327 (807)
T ss_pred cceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccC-CCCCceE-----------eee
Confidence 388899998887777 899999999999999999999999999999998763211 3222222 222
Q ss_pred ccCCCCC-----------------------------cccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhhc---CCC
Q 021380 157 MDGFHLY-----------------------------LSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN---QGS 203 (313)
Q Consensus 157 q~~~~~~-----------------------------~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~---~~~ 203 (313)
|.-.... ....|+.+.+.... .++.........+++.+|.-+|. ..+
T Consensus 328 QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~ 407 (807)
T KOG0066|consen 328 QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQE 407 (807)
T ss_pred eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhc
Confidence 2211000 00012212111110 11111111123445566666663 245
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
++...+|||.|.||++|+|+...+-+|++|+|+.-||- .+-..|..+.+..++||||..++..
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 66779999999999997777777777777777666665 2223444555556899999887665
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-14 Score=123.50 Aligned_cols=126 Identities=9% Similarity=-0.018 Sum_probs=78.8
Q ss_pred cccccceeecCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCCce-eeeCCCCCCCeEEEEeccCCCCCcccCCcccC
Q 021380 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 172 (313)
Q Consensus 96 iL~~is~~i~~Ge-iv~IiGpNGsGKSTLlk~L~-Gll~~~~p~~G~-i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~ 172 (313)
.+-++||++.+|+ +++|.||||||||||+|+|. +.+. +..|- +-... ...++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~vp~~~---~~~~~~~~~~-------------- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLPIPAAE---GSSLPVFENI-------------- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCCccccc---cccCcCccEE--------------
Confidence 3457999999995 79999999999999999998 3332 22220 00000 0001111111
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH-----
Q 021380 173 PKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----- 245 (313)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~----- 245 (313)
+..++ .........||+||+|++.++.++ .+++++++|+++..+|.....
T Consensus 76 ----------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~ 132 (200)
T cd03280 76 ----------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIA 132 (200)
T ss_pred ----------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 00011 112334568999999999997664 688999999999999984322
Q ss_pred HHHHhhc---CeEEEEcChHHH
Q 021380 246 DVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 246 ~l~~l~~---~~i~vtHd~~~~ 264 (313)
.+..+.+ .++++||+.+..
T Consensus 133 ~l~~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 133 ILEELLERGALVIATTHYGELK 154 (200)
T ss_pred HHHHHHhcCCEEEEECCHHHHH
Confidence 2333332 257999986543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-13 Score=147.43 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=73.1
Q ss_pred HHHHHHHhh---cCCCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccCh----hhHHHHHHhhc---CeEEE
Q 021380 191 LLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 257 (313)
Q Consensus 191 ~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~v 257 (313)
..+.|..+| ....++..+|||||.||+.||..+..+ ..++++|+|+..|+. .++..+.++.+ .+|+|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 345555666 345678889999999999999998754 679999999999998 34444444444 35899
Q ss_pred EcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 258 EVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 258 tHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+||++.+.. +++ |++++.|+|+++..
T Consensus 1759 eH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1759 DHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred eCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999988 665 79999999999875
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-13 Score=120.23 Aligned_cols=129 Identities=13% Similarity=0.092 Sum_probs=85.8
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+.+|++|++..|++++|+||||+||||++++|+++.- ..+...+++-.. ..+++.+++
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~vpa~~-----~~l~~~d~I-- 75 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFVPAEY-----ATLPIFNRL-- 75 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCcchhh-----cCccChhhe--
Confidence 8899999999999999999999999999999998863 111111222111 113333332
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh-----hHHHHH
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~-----~~~~l~ 248 (313)
+..++. ...+....||+|++|. ..+..++.++.++++||+...+|.. .+..+.
T Consensus 76 -------------------~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~ 135 (204)
T cd03282 76 -------------------LSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE 135 (204)
T ss_pred -------------------eEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 122221 2234556888999865 4556677788999999999988872 233343
Q ss_pred Hhhc---CeEEEEcChHHHHH
Q 021380 249 SMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~---~~i~vtHd~~~~~~ 266 (313)
.+.+ .++++||+.+.+..
T Consensus 136 ~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 136 CLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHhcCCEEEEECChHHHHHH
Confidence 4332 35799999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-12 Score=112.40 Aligned_cols=185 Identities=15% Similarity=0.102 Sum_probs=123.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCc-ccCCcccCHHHHH---HhcC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKEAH---ARRG 181 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~-~~ltv~e~l~~~~---~~~~ 181 (313)
++-++||.|.+||||||+.+.|...+. . . ...+.++.+|.|+.+. ..++. ..+... ..+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~-~----------~~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---R-E----------NINAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---h-c----------CCCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 456999999999999999999998774 1 1 1125678899876432 12221 111110 1233
Q ss_pred C--CCCccHHHHHHHHHHhhcCCCccCCCCC------------ccCCCcchhhhhcccCccEEEEcCcccccChhhHHHH
Q 021380 182 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD------------HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (313)
Q Consensus 182 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~LS------------gGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l 247 (313)
. |.+.+.+.+.+.|..++.......+.|. -|.-..- ..+..++++++.||.+.+..- -...+
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~---e~i~~p~dvIivEGLh~~~~~-~~~~l 143 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPW---EPLPEGTDLLFYEGLHGGVVT-DQVDV 143 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCc---eEecCCCcEEEEecccccccc-ccHHH
Confidence 4 6677778888888888754333333232 1211100 112345899999998776421 12567
Q ss_pred HHhhcCeEEEEcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 248 SSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 248 ~~l~~~~i~vtHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
.+++|-.|+|.-+.++...|.+.|++ ++|.+.|-+...+.+.. |++. ||.|++..||+.+...
T Consensus 144 r~~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqrv 208 (290)
T PRK15453 144 AQHVDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQRV 208 (290)
T ss_pred HHhCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEeC
Confidence 88889899999999988877777777 48998887777777775 7776 9999999999988754
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=115.57 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=47.9
Q ss_pred CccCCCCCccCCCcchhhhhc----ccCccEEEEcCcccccCh----hhHHHHHHhhcC-----eEEEEcChHHHHH
Q 021380 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ 266 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al----~~~a~~li~d~~~llLDE----~~~~~l~~l~~~-----~i~vtHd~~~~~~ 266 (313)
+..+.+||+||||++.++.++ +.+++++++|+|+..+|+ .+++.+.++.+. +|++|||+.....
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 446679999999998776443 478999999999999998 445555555432 4799999866554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=130.39 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH--HHH
Q 021380 202 GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 202 ~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~--rvi 269 (313)
.-++..+|||||-||+-||.-|...+ .+.++|+|+-.|-- .+++.|..+.+. +|+|.|+++++.. +++
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEE
Confidence 45677899999999999999887766 78899999988876 555666666654 5899999999887 676
Q ss_pred ----------hhhhccCChhHHHH
Q 021380 270 ----------KRHISTGKPPDVAK 283 (313)
Q Consensus 270 ----------gr~v~~G~~~e~~~ 283 (313)
|++++.|+|++++.
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHh
Confidence 69999999999976
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=110.18 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=78.5
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHh
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~ 179 (313)
.++.+.++.++.|+|||||||||+++.+...+- ...|.+...... +-++..+. ..+.+
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~~~---------~~g~~~~~------~~~~~---- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRSGV---------KAGCIVAA------VSAEL---- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccCcc---------cCCCccee------eEEEE----
Confidence 344455567999999999999999999877775 444433221000 00000000 00000
Q ss_pred cCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc----CccEEEEcCcccccCh----hhHHHHHHhh
Q 021380 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMF 251 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE----~~~~~l~~l~ 251 (313)
-.....||+||+||+.+++++.. .++++++|++...+|. .+.+.+.++.
T Consensus 72 -----------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~ 128 (162)
T cd03227 72 -----------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL 128 (162)
T ss_pred -----------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 00011399999999999999975 6799999999999998 3444455544
Q ss_pred c---CeEEEEcChHHHHH
Q 021380 252 D---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 252 ~---~~i~vtHd~~~~~~ 266 (313)
. ..|++||+.+....
T Consensus 129 ~~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 129 VKGAQVIVITHLPELAEL 146 (162)
T ss_pred hcCCEEEEEcCCHHHHHh
Confidence 3 35799999998754
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-13 Score=114.96 Aligned_cols=127 Identities=12% Similarity=0.039 Sum_probs=72.5
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHh-cccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-NKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll-~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~ 177 (313)
..++++.+|++++|+||||||||||+++|++.. . +..|...... ...++++.+... .+...++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~---~~~g~~~~~~---~~~i~~~dqi~~-----~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL---AQIGCFVPAE---SASIPLVDRIFT-----RIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH---HHcCCCcccc---ccccCCcCEEEE-----EecCccc-----
Confidence 345667789999999999999999999999543 2 3333221110 001222111100 0111111
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhH----H-HHHHhhc
Q 021380 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----K-DVSSMFD 252 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~----~-~l~~l~~ 252 (313)
.......++.+++| +..+...+.+++++++|+++..+|+... . .+..+.+
T Consensus 85 ------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~ 139 (202)
T cd03243 85 ------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE 139 (202)
T ss_pred ------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 11122334455554 4444556678999999999999998322 2 2232322
Q ss_pred ---CeEEEEcChHHHHH
Q 021380 253 ---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 253 ---~~i~vtHd~~~~~~ 266 (313)
.+|++||+.+.+..
T Consensus 140 ~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 140 KGCRTLFATHFHELADL 156 (202)
T ss_pred cCCeEEEECChHHHHHH
Confidence 25799999887665
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-12 Score=108.43 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHH
Q 021380 209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 209 LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
||+||+||++++++++ .+++++++|++...+|. .+.+.+.++... +|++||+.+.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 9999999999999885 58899999999999998 344444444333 579999988764
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-12 Score=122.83 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred cccccceeecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCce-eeeCCCCCCCeEEEEeccCCCCCcccCCc
Q 021380 96 PTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 iL~~is~~i~~G-----eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~-i~~~~~~~~~~i~~v~q~~~~~~~~~ltv 169 (313)
.+.++.|.|..| |++..+|.||.|||||+++++|.++ |+.|. | +.-.++|-+|.-. +...-||
T Consensus 351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~------p~lnVSykpqkis--pK~~~tv 419 (592)
T KOG0063|consen 351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEI------PVLNVSYKPQKIS--PKREGTV 419 (592)
T ss_pred eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcc------cccceeccccccC--ccccchH
Confidence 345566666666 4789999999999999999999998 88763 2 2223677777622 2222344
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHH--
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK-- 245 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~-- 245 (313)
++-+.. ..++. -.+...+.++++.+. ...++.+..|||||.||++++..+-.+|.+.+.|++.+.||.+..-
T Consensus 420 R~ll~~--kIr~a--y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A 495 (592)
T KOG0063|consen 420 RQLLHT--KIRDA--YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA 495 (592)
T ss_pred HHHHHH--HhHhh--hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence 433221 12211 123344556666665 3456788899999999999999999999999999999999983222
Q ss_pred ------HHHHhhcCeEEEEcChHHHH
Q 021380 246 ------DVSSMFDEKWFIEVDLDTAM 265 (313)
Q Consensus 246 ------~l~~l~~~~i~vtHd~~~~~ 265 (313)
.+....+...+|.||.-++.
T Consensus 496 skvikRfilhakktafvVEhdfImaT 521 (592)
T KOG0063|consen 496 SKVIKRFILHAKKTAFVVEHDFIMAT 521 (592)
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHH
Confidence 22222222358899976554
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-12 Score=100.34 Aligned_cols=67 Identities=19% Similarity=0.071 Sum_probs=54.1
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--------CCCeEEEEeccCCCCCccc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------~~~~i~~v~q~~~~~~~~~ 166 (313)
.+|++++|++++|++++|+||||||||||++++. +|++.++|.+ ..+.+++++|+ .++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~--- 68 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE--- 68 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch---
Confidence 3899999999999999999999999999999974 5778887754 23446777777 222
Q ss_pred CCcccCHHH
Q 021380 167 LDAMEDPKE 175 (313)
Q Consensus 167 ltv~e~l~~ 175 (313)
.++++|+.+
T Consensus 69 ~ti~~Ni~~ 77 (107)
T cd00820 69 IRLRLNIFL 77 (107)
T ss_pred hhHHhhcee
Confidence 588999876
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-12 Score=116.09 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=81.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE-EEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT-VLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~-~v~q~~~~~~~~~ltv~e~l~ 174 (313)
+.+|+++++.++++++|.||||+|||||+++|+-..- .. .+| +++.+... +..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la-~~g~~vpa~~~~-----~~~----- 72 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL---------------MA-QIGCFVPCDSAD-----IPI----- 72 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH---------------HH-HhCCCcCcccEE-----Eec-----
Confidence 7899999999999999999999999999999874321 00 011 33332110 010
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc--ccCccEEEEcCc---ccccChhh--HHHH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGV--WKDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al--~~~a~~li~d~~---~llLDE~~--~~~l 247 (313)
+.+++..++... .....+|.|+++++.++.++ +.++.++++||+ +..+|... +..+
T Consensus 73 ----------------~~~il~~~~l~d-~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il 135 (222)
T cd03285 73 ----------------VDCILARVGASD-SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIA 135 (222)
T ss_pred ----------------cceeEeeecccc-chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH
Confidence 112223333222 22568999999999998888 788999999999 77788721 2122
Q ss_pred HHhh----cCeEEEEcChHH
Q 021380 248 SSMF----DEKWFIEVDLDT 263 (313)
Q Consensus 248 ~~l~----~~~i~vtHd~~~ 263 (313)
..+. ..++++||+.+.
T Consensus 136 ~~l~~~~~~~vlisTH~~el 155 (222)
T cd03285 136 EYIATQIKCFCLFATHFHEL 155 (222)
T ss_pred HHHHhcCCCeEEEEechHHH
Confidence 2222 125799997444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-11 Score=101.72 Aligned_cols=139 Identities=24% Similarity=0.344 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
+++|.|++|||||||.+.|+..+. . +.++++|+++.+...+....+ ....++.|...+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---~---------------~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---N---------------CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---C---------------CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999873 1 456889988766533322111 2234667778888
Q ss_pred HHHHHHHHHhhcCCCccCCCCCccCCCcch-------------hhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeE
Q 021380 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~~~~~~~~LSgGekqRv~-------------la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i 255 (313)
+.+.+.|..+........+..+.+...... -......++++++.|+.+++.|+ .+.++++..|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 888888888876543333344443322110 01123455789999999998885 5778899999
Q ss_pred EEEcChHHHHHHHHhhh
Q 021380 256 FIEVDLDTAMQRVLKRH 272 (313)
Q Consensus 256 ~vtHd~~~~~~rvigr~ 272 (313)
|+.-|.+++.+|.+.|.
T Consensus 136 fvd~~~d~~~~Rr~~R~ 152 (187)
T cd02024 136 FLRVPYETCKRRREART 152 (187)
T ss_pred EecCCHHHHHHHHHHcC
Confidence 99999999998777553
|
This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. |
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-11 Score=103.73 Aligned_cols=183 Identities=24% Similarity=0.347 Sum_probs=105.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC-CC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PW 184 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~-~~ 184 (313)
..-+|||.|++|||||||.+.|+..++ ..| ..+..+++|+|+.+.. ......+ ....+. +.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~---~r~~~~~-~~~~g~~~~ 82 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV---IRYRRGR-ESAEGYYED 82 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH---HHHHcCC-CChhhcCcc
Confidence 456999999999999999999999985 222 1244567887764421 1000000 000000 12
Q ss_pred CccHHHHHHHHHH-hhcCCC--ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 185 TFNPLLLLNCLKN-LRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 185 ~~~~~~~~~~l~~-l~~~~~--~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
..+.+.+.+.+-. +..... ...+.++.-...+..-.........+++.|+++++- ..+...++..|+++-+.
T Consensus 83 ~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~~~~~d~~i~v~~~~ 157 (223)
T PRK06696 83 AYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PELRDLWDYKIFLDTDF 157 (223)
T ss_pred ccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhHHhhCCEEEEEECCH
Confidence 3455544443322 221111 111122222222221111122346789999988753 35667788889999999
Q ss_pred HHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhh--cCCCCEEeccCC
Q 021380 262 DTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~~ 312 (313)
+...+|+..|.. ..|...+....++ ..+.++++ |+.+. +..||+|+++.+
T Consensus 158 e~~~~R~~~Rd~~~~g~~~~~~~~~~-~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 158 EVSRRRGAKRDTEAFGSYEEAEKMYL-ARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhhhhhhCCchHHHHHHH-HHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 999888886654 3576555555444 45666666 76554 788999999876
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-11 Score=103.17 Aligned_cols=129 Identities=10% Similarity=0.017 Sum_probs=78.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH--HhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G--ll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l 173 (313)
+-+|+++.=..+.+++|.||||+|||||||.|.. .+ +..|.+..... -.++|+.|....+. ...++.+++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l----a~~G~~v~a~~---~~~~~~d~i~~~l~-~~~si~~~~ 89 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL----AHIGSFVPADS---ATIGLVDKIFTRMS-SRESVSSGQ 89 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH----HhCCCeeEcCC---cEEeeeeeeeeeeC-CccChhhcc
Confidence 4455555432237999999999999999999984 44 55666555432 23666666522111 112222221
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh-----hHHHHH
Q 021380 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVS 248 (313)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~-----~~~~l~ 248 (313)
. .+.. +-||++++++++..+.++++||+.-.+|+. ....++
T Consensus 90 S---------------~f~~-------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 S---------------AFMI-------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred c---------------hHHH-------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 1 0111 114456666666778999999999999962 233445
Q ss_pred Hhhc------CeEEEEcChHHHHH
Q 021380 249 SMFD------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 249 ~l~~------~~i~vtHd~~~~~~ 266 (313)
.+.+ .++++||+.+.+..
T Consensus 136 ~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHhcCCCCcEEEEEcChHHHHHh
Confidence 5443 25799999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-11 Score=111.38 Aligned_cols=58 Identities=14% Similarity=-0.026 Sum_probs=44.6
Q ss_pred CCCccCCCcchhhhhccc----CccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHH
Q 021380 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAM 265 (313)
Q Consensus 208 ~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~ 265 (313)
.|||||+||++++++++. .++++++|+|...||..... .+.++.. .+|++|||++...
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~ 237 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAA 237 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHH
Confidence 599999999999986543 89999999999999994444 4443333 2579999998643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-10 Score=99.76 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=41.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCceeeeCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQ 145 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G-ll~~~~p~~G~i~~~~ 145 (313)
+.+|++|.+.+|++++|.||||+||||++++|++ .+. +..|...+..
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a~ 67 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPAS 67 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEcC
Confidence 7899999999999999999999999999999999 555 7888776653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-10 Score=119.95 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=78.1
Q ss_pred cceeecCC-eEEEEECCCCCCHHHHHHHHHHH-hcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH
Q 021380 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (313)
Q Consensus 100 is~~i~~G-eiv~IiGpNGsGKSTLlk~L~Gl-l~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~ 177 (313)
+|+.+..+ ++++|.||||+|||||||+|+|. +. +..| .+++...... +...+.+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G-------------~~Vpa~~~~~----~~~~d~i---- 369 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSG-------------IPIPANEHSE----IPYFEEI---- 369 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhC-------------CCccCCcccc----ccchhhe----
Confidence 78888877 89999999999999999999998 33 3333 1233321100 0111110
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----h-HHHHHHhhc
Q 021380 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD 252 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~-~~~l~~l~~ 252 (313)
..... +.+.+ .....+||+||++++.+...+ ..+.++++|++...+|+. + +..+..+.+
T Consensus 370 -~~~i~---~~~si-----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 370 -FADIG---DEQSI-----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK 433 (771)
T ss_pred -eeecC---hHhHH-----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 00000 00111 123567899999988886554 578999999999999982 2 223333322
Q ss_pred ---CeEEEEcChHHHH
Q 021380 253 ---EKWFIEVDLDTAM 265 (313)
Q Consensus 253 ---~~i~vtHd~~~~~ 265 (313)
.++++||+.++..
T Consensus 434 ~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 434 QNAQVLITTHYKELKA 449 (771)
T ss_pred cCCEEEEECChHHHHH
Confidence 2579999988743
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=93.14 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=100.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
..-+|||-|+.|||||||.+.|...+. ..| ..+.++..|+++......-...+... ...+ ...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~~----------~~~~~i~~Dd~~~~~~~~~~~~~~~~-~~~~--~~~ 78 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK----QEG----------IPFHIFHIDDYIVERNKRYHTGFEEW-YEYY--YLQ 78 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----hCC----------CcEEEEEcCcccchhhhHHhcCCCch-hhhh--hhh
Confidence 346999999999999999999999885 111 12566788876432210000000000 0000 001
Q ss_pred ccHHHHH-HHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHH
Q 021380 186 FNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 186 ~~~~~~~-~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
++...+. .++..+........|.++.-.+.+..-. ....++.++++|+++++ . ..+.++++..|+|+-+.+..
T Consensus 79 ~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~-~~~~~~~vvIvEG~~l~-~----~~~~~~~d~~v~V~~~~~~~ 152 (193)
T PRK07667 79 WDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKK-VQIPIVGVIVIEGVFLQ-R----KEWRDFFHYMVYLDCPRETR 152 (193)
T ss_pred hhHHHHHHHHHHhhcCCCeEEEeeeccccccccccc-eecCCCCEEEEEehhhh-h----hhHHhhceEEEEEECCHHHH
Confidence 2333333 3445555444445555555444433211 11245789999999853 2 35667889999999999998
Q ss_pred HHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHHh--hcCCCCEEec
Q 021380 265 MQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 309 (313)
Q Consensus 265 ~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~--~~~~aD~i~~ 309 (313)
.+|++.|. |... ..+...+.+.++ |+.. .+..||+|++
T Consensus 153 ~~R~~~r~---~~~~----~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 153 FLRESEET---QKNL----SKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHhccc---HhHH----HHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 87776422 2222 233344556666 6543 4888999984
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=100.33 Aligned_cols=132 Identities=24% Similarity=0.328 Sum_probs=84.2
Q ss_pred cccccceee---cCCeE-----EEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccC
Q 021380 96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 iL~~is~~i---~~Gei-----v~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~l 167 (313)
+++++++.+ ++|+. +||+|+||||||||++.|.+++. +. | ..++.++.|++++.....
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g----------~~~g~IsiDdfYLt~~e~ 146 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G----------RRAASLSIDDFYLTAADQ 146 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C----------CceeEEEECCcccchhhH
Confidence 678888887 45554 99999999999999999999996 43 1 124567777665432111
Q ss_pred Cc--ccCHH-HHHHhcCCCCCccHHHHHHHHHHhh----cCCCccCCCCCc----cCCCcchhh--hhcccCccEEEEcC
Q 021380 168 DA--MEDPK-EAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDG 234 (313)
Q Consensus 168 tv--~e~l~-~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~LSg----GekqRv~la--~al~~~a~~li~d~ 234 (313)
.. .++.. .....+|.+.+.+.....+.++.+. ......+|.|+. |+-.|..-. ..+..+++++|+|+
T Consensus 147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG 226 (347)
T PLN02796 147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG 226 (347)
T ss_pred HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence 10 01100 0122345666777777777777776 234456676654 444465321 12335689999999
Q ss_pred cccccCh
Q 021380 235 NYLFLDG 241 (313)
Q Consensus 235 ~~llLDE 241 (313)
.+++.-+
T Consensus 227 w~vG~~p 233 (347)
T PLN02796 227 WMLGFKP 233 (347)
T ss_pred cccCCCC
Confidence 9999843
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-10 Score=97.95 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=32.2
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.+|++|++.+ ++++|+||||+|||||+|+|++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 78899999987 999999999999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-10 Score=111.65 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=43.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-eeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~i~~~~~~ 147 (313)
+|++|||++.+||+++|+|||||||||||+ .|+.. |++| +|.++|.+
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~ 68 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATH 68 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEE
Confidence 899999999999999999999999999999 67777 8888 79999865
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-10 Score=102.37 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=34.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.-++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE
Confidence 5789999999999999999999999 999999998864
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=97.77 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=46.5
Q ss_pred CCCCccCCCcchhhhhcc---------cCccEEEEcCcccccChhhHHHHHHhhc---CeEEEEcChHHHH
Q 021380 207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAM 265 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~---------~~a~~li~d~~~llLDE~~~~~l~~l~~---~~i~vtHd~~~~~ 265 (313)
..+|+||+|++.++++++ ..+.++++|+++..||+...+.+.+.+. .+++++|+.+.+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~ 252 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFD 252 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhcc
Confidence 368999999999999875 6889999999999999966555555543 4578888776543
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-10 Score=99.75 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=38.7
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----h-HHHHHHhhc----CeEEEEcChHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD----EKWFIEVDLDTA 264 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~-~~~l~~l~~----~~i~vtHd~~~~ 264 (313)
.....||+|++|...+. ..+.+++++++||++..+|+. + ...++.+.+ .++++||+.+..
T Consensus 57 ~~~s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~ 125 (185)
T smart00534 57 QGLSTFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT 125 (185)
T ss_pred ccccHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 34557788777644332 234478999999999999983 2 222333332 257999999654
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=106.41 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=58.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...|. ..++++.+|.+ ..++.|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHHH
Confidence 5667778888999999999999999999999999886 44442 24788998853 2678999999
Q ss_pred HHHhcCCCC
Q 021380 176 AHARRGAPW 184 (313)
Q Consensus 176 ~~~~~~~~~ 184 (313)
+...++.+.
T Consensus 308 ~AeilGVpv 316 (484)
T PRK06995 308 YGKILGVPV 316 (484)
T ss_pred HHHHhCCCe
Confidence 888877654
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-09 Score=93.78 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=42.7
Q ss_pred CCCccC--------CCcchhhhhcccCccEEEEcCcccccC---h---hhHHHHHHhhcCeEEEEcChHHHHH
Q 021380 208 SFDHGV--------GDPVEDDILVGLQHKVVIVDGNYLFLD---G---GVWKDVSSMFDEKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgGe--------kqRv~la~al~~~a~~li~d~~~llLD---E---~~~~~l~~l~~~~i~vtHd~~~~~~ 266 (313)
.+|||+ +||+++|+++..++.+.++ .+.++| | .+.+.+....+..|+++|++.....
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC
Confidence 469999 9999999998778888888 677777 2 2334444444667899999887654
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-09 Score=91.30 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=41.5
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.+=+.+.+.+|+.++|+||||||||||++.|+|+++ |+.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCc
Confidence 444667899999999999999999999999999998 99998888663
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-09 Score=95.11 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=39.0
Q ss_pred CCCccCCCcchhhhhcc----cCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 208 ~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
.||||||.+++||..++ .+..++++|+...-||+ .+.+.|.++.+ ..|++||+......
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999986653 46778888888888888 44445555542 36899999877644
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.1e-08 Score=82.50 Aligned_cols=79 Identities=27% Similarity=0.403 Sum_probs=50.1
Q ss_pred cEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhH---HHHHHHHhcCCchHH-HHHhhcCC
Q 021380 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD---VAKWRIEYNDRPNAE-LIMKSKKN 303 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e---~~~~~~~~~~~~~~~-~i~~~~~~ 303 (313)
.+++.|.++..+. +.+.+.++..|++..+.+....|++.|.......++ ....++. ..++.+. ++.+.+..
T Consensus 79 ~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~ 153 (182)
T PRK08233 79 DYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN-YARPLYLEALHTVKPN 153 (182)
T ss_pred eEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH-HHHHHHHHHhhcCccC
Confidence 5677888776555 345666788899999999988887766543322222 2333333 3344443 55666677
Q ss_pred CCEEeccC
Q 021380 304 ADLVIKSI 311 (313)
Q Consensus 304 aD~i~~~~ 311 (313)
||+++++.
T Consensus 154 ~~~vId~~ 161 (182)
T PRK08233 154 ADIVLDGA 161 (182)
T ss_pred CeEEEcCC
Confidence 89998754
|
|
| >PLN03046 D-glycerate 3-kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-08 Score=92.22 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=98.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCc-c-cCHHH-HHHhcCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA-M-EDPKE-AHARRGA 182 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv-~-e~l~~-~~~~~~~ 182 (313)
+.-+|||.|++|||||||++.|.++++ +. | ..++.+.+|++++......- . .|... ....+|.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g----------~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~ 276 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VT-G----------RKSATLSIDDFYLTAEGQAELRERNPGNALLELRGN 276 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---cc-C----------CceEEEEECCccCChHHHHHHHhhCccchhhcccCC
Confidence 447999999999999999999999996 42 1 23567888877643211100 0 00000 0112345
Q ss_pred CCCccHHHHHHHHHHhh----cCCCccCCCCCc----cCCCcchhh--hhcccCccEEEEcCcccccChh----------
Q 021380 183 PWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDGNYLFLDGG---------- 242 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~----~~~~~~~~~LSg----GekqRv~la--~al~~~a~~li~d~~~llLDE~---------- 242 (313)
+...+.....+.+..+. .+....+|.|+. |+..|+.-. ..+..+++++|+||.++++-+.
T Consensus 277 PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~ 356 (460)
T PLN03046 277 AGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDP 356 (460)
T ss_pred CccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccCh
Confidence 66666666666666653 344455665553 445565432 2234668999999999988430
Q ss_pred ----hHHHHHHh-------hcCeE-EEEcChHHHHHHHH---hhhhcc---CChhHHHHHHHHhcCCchHH
Q 021380 243 ----VWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHIST---GKPPDVAKWRIEYNDRPNAE 295 (313)
Q Consensus 243 ----~~~~l~~l-------~~~~i-~vtHd~~~~~~rvi---gr~v~~---G~~~e~~~~~~~~~~~~~~~ 295 (313)
+-+.|... ++..| +-.-|.+.+.++.. .+.... |-.++.+.. +...++|.++
T Consensus 357 ~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~-FV~~YmPaY~ 426 (460)
T PLN03046 357 QLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMD-FVSRYLPAYK 426 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHhhhHHH
Confidence 11112222 22223 44577777777444 222222 444455444 4556677776
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-09 Score=101.36 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=93.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe----ccCCCCCc-ccC---CcccCHHH
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP----MDGFHLYL-SQL---DAMEDPKE 175 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~----q~~~~~~~-~~l---tv~e~l~~ 175 (313)
..+|++.|++|-||-||||-+++++|-++ |.-|.....- +-...++|+- |+.+.... ..+ .-.+++..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~pp-~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ 172 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNPP-DWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQ 172 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCCc-chHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHH
Confidence 35899999999999999999999999999 8877542110 0000111110 11110000 000 00111111
Q ss_pred H-HHhcCC-----CCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hh
Q 021380 176 A-HARRGA-----PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GV 243 (313)
Q Consensus 176 ~-~~~~~~-----~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~ 243 (313)
. ....+. ....+.....++++.+. ...++.+.+||||+-||.++|.+.+..+++.++|++---||- ..
T Consensus 173 ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLka 252 (592)
T KOG0063|consen 173 IPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKA 252 (592)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhH
Confidence 1 000100 00011112223333333 345678889999999999999999999999999999999986 22
Q ss_pred HHHHHHhhc---CeEEEEcChHHHHH
Q 021380 244 WKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 244 ~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
...|+.+.. .+|+|.||+.+...
T Consensus 253 A~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 253 AITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred HHHHHHhhCCCCeEEEEEeechHHHh
Confidence 334444443 36899999998765
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=88.60 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=34.2
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+-+|++|++.+|++++|.||||+||||+++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 789999999999999999999999999999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-08 Score=97.91 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=64.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC---CC----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VK---- 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~---~~---- 147 (313)
.+.++.+++++.|... +.+++.++ .|.+|++++|+|+||+|||||+++|+++.. |+.|.|.+.| .+
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~ 209 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREF 209 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHH
Confidence 3468999999999632 23888885 999999999999999999999999999998 9999887754 22
Q ss_pred --------CCCeEEEEeccCC
Q 021380 148 --------PPDVATVLPMDGF 160 (313)
Q Consensus 148 --------~~~~i~~v~q~~~ 160 (313)
..+.+++++|.+.
T Consensus 210 ~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 210 LEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred hHHHHHHhhCCeEEEEEcCCC
Confidence 1246899999753
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=80.86 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=85.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
.+-.+|+|.|++|||||||.+.|+..+. +.++.+|.++... + .+ +
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~---~---~~---------~- 57 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGW---H---GL---------A- 57 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceeccc---c---cC---------C-
Confidence 3456899999999999999999998764 3456667543211 1 10 0
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc-----CeEEEEc
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEV 259 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~-----~~i~vtH 259 (313)
.....+.+.+..-+.. ...+ ++.-...+... ..+.+..+++.++-..+.+ .+.++++ ..|+++-
T Consensus 58 -~~~~~l~~~~l~~g~~--~~~~-yd~~~~~~~~~--~~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld~ 126 (172)
T PRK06547 58 -AASEHVAEAVLDEGRP--GRWR-WDWANNRPGDW--VSVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLDG 126 (172)
T ss_pred -hHHHHHHHHHHhCCCC--ceec-CCCCCCCCCCc--EEeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEEC
Confidence 0112222222221111 1111 22111111111 1223467888898877654 3455555 4689999
Q ss_pred ChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHH--hhcCCCCEEec
Q 021380 260 DLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIM--KSKKNADLVIK 309 (313)
Q Consensus 260 d~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~--~~~~~aD~i~~ 309 (313)
+.+....|++.|... ... +...+.+.++ |+. +.+..||+++.
T Consensus 127 ~~~vr~~R~~~Rd~~-------~~~-~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 127 PEALRKERALARDPD-------YAP-HWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred CHHHHHHHHHhcCch-------hhH-HHHHHHHHHHHHHhcCCChhccEEEec
Confidence 999999888877532 112 2234456666 553 36899999874
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=91.08 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=36.6
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~ 144 (313)
+++.+..|..++|+||+|||||||++.|+++++ ++.|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEEc
Confidence 678899999999999999999999999999997 766655543
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-09 Score=108.25 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=76.4
Q ss_pred cceeec-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 100 is~~i~-~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
.++.+. .+.++.|.|||++||||+||.+....- .... +.+||-... ..+.+.+++.
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~--maq~-------------G~~vpa~~~----~~i~~~~~i~---- 375 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL--MAKS-------------GLPIPANEP----SEIPVFKEIF---- 375 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH--HHHh-------------CCCcccCCC----ccccccceEE----
Confidence 345554 356899999999999999999965421 0111 123333310 0122222210
Q ss_pred hcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHH-HHHHhh
Q 021380 179 RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMF 251 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~-~l~~l~ 251 (313)
..++. .......+||+||++++.++.++ ..+.++++|++...+|+. +.. .+..+.
T Consensus 376 -----------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~ 437 (782)
T PRK00409 376 -----------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR 437 (782)
T ss_pred -----------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11221 11235668999999999998777 577899999999999982 222 222222
Q ss_pred c---CeEEEEcChHHHHH
Q 021380 252 D---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 252 ~---~~i~vtHd~~~~~~ 266 (313)
+ .+|++||+.++...
T Consensus 438 ~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 438 KRGAKIIATTHYKELKAL 455 (782)
T ss_pred HCCCEEEEECChHHHHHH
Confidence 2 25799999887654
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.2e-09 Score=108.01 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred HHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcCh
Q 021380 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~ 261 (313)
.|+.++.. .++++.+|||||+||+.||++++..+ .++++|+|+..||+ .+++.|.++.+ .+|+|+||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45556643 47788899999999999999998876 89999999999999 44555555543 257999999
Q ss_pred HHHHH--HHH----------hhhhccCChhHHHH
Q 021380 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+++.. |++ |+++..|+++++..
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 98765 443 47888888888743
|
|
| >COG4240 Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-07 Score=80.34 Aligned_cols=126 Identities=29% Similarity=0.446 Sum_probs=88.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccC-CcccCHHHHHHhcC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL-DAMEDPKEAHARRG 181 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~l-tv~e~l~~~~~~~~ 181 (313)
+-.+.-|+||.||.||||||+.-.|..++. ...| .++++++.|++++...+. ...++..-....+|
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~---~kg~----------ert~~lSLDDlYlthadrl~La~q~npllq~RG 112 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---AKGL----------ERTATLSLDDLYLTHADRLRLARQVNPLLQTRG 112 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH---Hhcc----------cceEEeehhhhhcchHHHHHHHHhcCchhcccC
Confidence 345567999999999999999999999986 2111 247889999876543211 11111111233568
Q ss_pred CCCCccHHHHHHHHHHhh-cCCCccCCCCCc----cCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 182 APWTFNPLLLLNCLKNLR-NQGSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~-~~~~~~~~~LSg----GekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
.|.+.|.....++|+.+. ......+|.|.. |.-.|.--......++.++|+++.++..-+
T Consensus 113 lpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 113 LPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 888999998889999887 344557778876 888886555555556889999999988766
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-08 Score=96.41 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=59.0
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee---eeCCCC--------------CCCeEEEEe
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---FDSQVK--------------PPDVATVLP 156 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i---~~~~~~--------------~~~~i~~v~ 156 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ ++.+.+ -.++.. .+..+++.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 3499999 9999999999999999999999999999987 775322 222211 123578888
Q ss_pred ccCCCCCcccCCcccCHHHHHHhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
++..... .+++.++....+.++
T Consensus 219 ~d~s~~~--rl~a~e~a~~iAEyf 240 (434)
T PRK07196 219 ADESPLM--RIKATELCHAIATYY 240 (434)
T ss_pred CCCChhh--hHHHHHHHHHHHHHh
Confidence 8854332 467777776665554
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=83.78 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=33.8
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHH-HHHHHHHhc
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRIN 132 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTL-lk~L~Gll~ 132 (313)
+.++++.+.+++ .+++|++++|.|+|||||||| ++.+.+.++
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445666666654 268899999999999999999 689998875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-08 Score=103.25 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=64.4
Q ss_pred CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH--HHH-
Q 021380 202 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 269 (313)
Q Consensus 202 ~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rvi- 269 (313)
.++.+.+|||||+||+.||++++..+ .++++|+|+..||+ .+.+.|.++.+ .+|+|+||++++.. |++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46788899999999999999998875 89999999999999 44555555544 35799999998765 433
Q ss_pred ---------hhhhccCChhHHH
Q 021380 270 ---------KRHISTGKPPDVA 282 (313)
Q Consensus 270 ---------gr~v~~G~~~e~~ 282 (313)
|++++.|++.++.
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred ecccccCCCCEEeeccCHHHHh
Confidence 5778888887764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-08 Score=88.92 Aligned_cols=46 Identities=7% Similarity=-0.079 Sum_probs=36.6
Q ss_pred CCCCcc--CCCcchhhhhcccCccEEEEcCcc-----cccChhhHHHHHHhhc
Q 021380 207 PSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFD 252 (313)
Q Consensus 207 ~~LSgG--ekqRv~la~al~~~a~~li~d~~~-----llLDE~~~~~l~~l~~ 252 (313)
...+|+ +++++.||++++.+++++++|+|+ ..||+...+.+.+++.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~ 201 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQ 201 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHH
Confidence 345555 777899999999999999999999 9999966666555543
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=88.87 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=65.1
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---C-----------CCeEEEE----
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---P-----------PDVATVL---- 155 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~---~-----------~~~i~~v---- 155 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+. .+.|.|.+.|+. . ....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4488888 99999999999999999999999999998841 344555553321 0 1123444
Q ss_pred -eccCCCCCcccCCcccCHHHHHHhcCCC---CCccHHHHHHHHHHhhc
Q 021380 156 -PMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 156 -~q~~~~~~~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~ 200 (313)
+|++..-.++.+ +...++......+.. ...+..++.++++.++.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 666543333323 333344444333322 12345677788888875
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.9e-08 Score=81.40 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 188 (313)
.++|+|+||+|||||++.|.+.+. + .|. . ..+|+.++... . .....++.... . .. .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~-~G~-~--------~~g~~~~~~~~-~-~~~~~~~~~~~----~--~~--~- 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---E-EGY-K--------VGGFYTEEVRE-G-GKRIGFKIIDL----D--TG--E- 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---H-CCC-e--------EEEEEcHHHHh-c-CCccceEEEEc----C--CC--C-
Confidence 589999999999999999999886 4 341 1 13455443111 1 00111110000 0 00 0
Q ss_pred HHHHHHHHHhhc----CCCccCCCCCccCCCcchhhhhcccCccEEEEcC--cccccChhhHHHHHHhhcC---eEEEEc
Q 021380 189 LLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE---KWFIEV 259 (313)
Q Consensus 189 ~~~~~~l~~l~~----~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~--~~llLDE~~~~~l~~l~~~---~i~vtH 259 (313)
...+...+. ...++...+|++++-+..+.......++++++|+ ++-.+|+...+.+..+.+. +|+++|
T Consensus 58 ---~~~l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h 134 (174)
T PRK13695 58 ---EGILARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLH 134 (174)
T ss_pred ---eEEccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEEC
Confidence 001111111 1123344789999888888777667788888887 5555566666777766643 479999
Q ss_pred ChHH
Q 021380 260 DLDT 263 (313)
Q Consensus 260 d~~~ 263 (313)
+...
T Consensus 135 ~~~~ 138 (174)
T PRK13695 135 RRSV 138 (174)
T ss_pred chhh
Confidence 9644
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-07 Score=86.90 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=61.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
+.+|++++|+||||+||||+++.|++... -..| ...++++..|.+. ....+.+.+.....+.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~~---------~~~v~~i~~d~~r-----igalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRHG---------ADKVALLTTDSYR-----IGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEecCCcc-----hhHHHHHHHHHHHcCCc
Confidence 47899999999999999999999999752 1111 1236777777542 34566677777776765
Q ss_pred CC--ccHHHHHHHHHHhhcCCCccCCCCCccCCCcch
Q 021380 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 184 ~~--~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~ 218 (313)
.. .+...+...+..+.......+.+ .|+.||..
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd~ 285 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRDQ 285 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcchH
Confidence 32 23333444444444444444444 58888754
|
|
| >PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-07 Score=89.66 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=38.8
Q ss_pred ceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 83 ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+...+|+.. +++|+-+.+ +|.+++|.||+||||||+.+.|+..+.
T Consensus 265 ~A~~~g~~R----LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 265 IAVRCGSTR----LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred EEEEeCCeE----EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345566655 999999988 889999999999999999999998874
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-07 Score=90.24 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=55.5
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
+.|+++.||... +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+|++.++...
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~ 247 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAA 247 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecch
Confidence 458999998877 8999999999999999999999999999999999999 999998776654
|
|
| >KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.1e-07 Score=86.37 Aligned_cols=191 Identities=26% Similarity=0.393 Sum_probs=128.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH---hcC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRG 181 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~---~~~ 181 (313)
...-++|+.|..++||||.+..+...+.++ +.+| ....+..++++.++- .+| .+++..... ...
T Consensus 42 ~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~-~~~~--------~~~~v~~ls~~~fY~---~lt-~~~~~~a~~~~~~f~ 108 (473)
T KOG4203|consen 42 KEPFVIGVAGGTASGKSTVCEKIVEQLGAI-ERDG--------RQPQVVLLSQDSFYK---VLT-SEELAKAQEGKYNFD 108 (473)
T ss_pred cceEEEEeecCcccCceeehHHHHHHhhhh-hhcc--------CCCeEEEeecHHHHH---hhc-hHHHHHhhhcccccc
Confidence 345689999999999999777666655321 2233 122356667764432 133 233333222 234
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
.+..++.+.+...++.+..+....++-|+.=--+|..--..++.++.++++++-+.+.| ..++++.+..+|++-|.
T Consensus 109 ~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~~~ 184 (473)
T KOG4203|consen 109 HPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDTDA 184 (473)
T ss_pred CCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEecCc
Confidence 55666767677777777666666666555433333211112345688899999999999 47777888889999999
Q ss_pred HHHHHHHH-hhhhccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 262 DTAMQRVL-KRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 262 ~~~~~rvi-gr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
+....+++ |-..+.|...+-+..+|..++.|+++ ||.|++..||++++...
T Consensus 185 d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 185 DVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred chhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 99888555 66667888777777777778888888 99999999999998753
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-07 Score=63.82 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.5
Q ss_pred ccccceeecC-CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~is~~i~~-Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++..+++.+ |.++.|.|+||||||||+..|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4445666764 57999999999999999999988775
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-07 Score=90.07 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=54.1
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+.++.+.++..|. +.. +++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~----aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIR----AIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCce----eeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECC
Confidence 3577888888884 334 99999 9999999999999999999999999999998 88887766554
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-07 Score=89.49 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=43.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ ++.|.|.+.|+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge 194 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE 194 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence 89999 9999999999999999999999999999998 99998877543
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-07 Score=85.16 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=42.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
+++++ |.+.+|++++|+|+||+|||||+++|+|... ++.|.+..-|
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG 104 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG 104 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence 89999 9999999999999999999999999999998 8887765544
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.1e-07 Score=84.38 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.4
Q ss_pred eEEEccceeEcccccccccccc-----------ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~-----------~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+.++||++.|.+.. .+|+ |+++.|.+|+.++|+||.|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 589999999997532 2786 9999999999999999999999999999999875
|
Members of this family differ in the specificity of RNA binding. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=89.47 Aligned_cols=87 Identities=23% Similarity=0.291 Sum_probs=59.5
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+++++++.+.+|++++|+||||+||||++..|++.+. ...| .+.++++..|.+- ....+.+..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~ 236 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRI 236 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHH
Confidence 6778888888999999999999999999999999885 3333 1346777777431 234556666
Q ss_pred HHHhcCCCCC--ccHHHHHHHHHHhh
Q 021380 176 AHARRGAPWT--FNPLLLLNCLKNLR 199 (313)
Q Consensus 176 ~~~~~~~~~~--~~~~~~~~~l~~l~ 199 (313)
.....+.+.. .+...+.+.++.+.
T Consensus 237 ~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 237 YGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred HHHhCCCCccccCCHHHHHHHHHHhc
Confidence 6666555432 23444555565554
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.2e-07 Score=86.79 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=43.3
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ceeeeCCCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---G~i~~~~~~ 147 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++. |.|-..+.+
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~e 191 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGRE 191 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCcc
Confidence 389999 9999999999999999999999999999887 776 777666654
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.6e-07 Score=75.42 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|++++|+|+||||||||+++|+|++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999999986
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.6e-07 Score=86.05 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=44.4
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+...|+
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGe 199 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGE 199 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEcc
Confidence 3489999 9999999999999999999999999999998 88888876664
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-07 Score=87.85 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=41.8
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
+++++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+..-|
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liG 192 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIG 192 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeC
Confidence 3478776 9999999999999999999999999999988 8888875433
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=65.89 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=42.0
Q ss_pred hcCeEEEEcChHHHHHHHHhhhhcc--CChhHHHHHHHHhcCCchHH-HHHhhc-CCCCEEeccC
Q 021380 251 FDEKWFIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE-LIMKSK-KNADLVIKSI 311 (313)
Q Consensus 251 ~~~~i~vtHd~~~~~~rvigr~v~~--G~~~e~~~~~~~~~~~~~~~-~i~~~~-~~aD~i~~~~ 311 (313)
.+..|+++-+++....|+..|.... |.+.+-+.+.+...+.+... |+.+.+ ...|++|++.
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeCc
Confidence 4456899999999888888766543 44556666666666666644 777775 4457998763
|
|
| >KOG2878 consensus Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-05 Score=67.24 Aligned_cols=176 Identities=20% Similarity=0.247 Sum_probs=103.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHH--------HHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HAR 179 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~--------~~~ 179 (313)
-++|+-||.|||||||.-.|--.+...|. | ...+++++.|+|++ |-.+.+.+. ...
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~Ky~--~---------E~s~~~~SvDDFYL-----The~Q~eL~k~npnN~Llq~ 95 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTKKYI--Q---------EYSSATISVDDFYL-----THEGQAELRKKNPNNALLQY 95 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHHHhc--c---------ccceEEEEecceee-----echhHHHHHhhCCCChhhcc
Confidence 48999999999999998887665531110 1 11478888887754 333433332 234
Q ss_pred cCCCCCccHHHHHHHHHHhhc----CCCccCCCCC----ccCCCcchhhhhc-ccCccEEEEcCcccccCh---------
Q 021380 180 RGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFD----HGVGDPVEDDILV-GLQHKVVIVDGNYLFLDG--------- 241 (313)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~LS----gGekqRv~la~al-~~~a~~li~d~~~llLDE--------- 241 (313)
+|.+...+.....++|+.+-. .....+|.|. +|.-.|.--.... +.+..++++++.++.+.+
T Consensus 96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~ 175 (282)
T KOG2878|consen 96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAV 175 (282)
T ss_pred CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheecc
Confidence 567778888888888887652 2224445332 3444443332222 124788999999998876
Q ss_pred -----------hhH----HHHHHhhcC-eEEEEcChHHHHHHHH------hhhhccCChhHHHHHHHHhcCCchHHHHHh
Q 021380 242 -----------GVW----KDVSSMFDE-KWFIEVDLDTAMQRVL------KRHISTGKPPDVAKWRIEYNDRPNAELIMK 299 (313)
Q Consensus 242 -----------~~~----~~l~~l~~~-~i~vtHd~~~~~~rvi------gr~v~~G~~~e~~~~~~~~~~~~~~~~i~~ 299 (313)
.-+ ..+.+.++. +++-+.|++-+-++.+ ...+..|-.+|.+.. +-.++.|.+.+.+|
T Consensus 176 d~l~Gdl~~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~-FV~rYmP~Yk~YL~ 254 (282)
T KOG2878|consen 176 DPLQGDLEVVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVND-FVSRYMPAYKAYLP 254 (282)
T ss_pred CcccccHHHHhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHH-HHHhhhhHHHhhhh
Confidence 001 111111222 3477788888877333 344556766665544 44567788775555
Q ss_pred h
Q 021380 300 S 300 (313)
Q Consensus 300 ~ 300 (313)
+
T Consensus 255 t 255 (282)
T KOG2878|consen 255 T 255 (282)
T ss_pred h
Confidence 3
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.3e-07 Score=85.71 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=43.0
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+...|
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG 180 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIG 180 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEc
Confidence 389999 9999999999999999999999999999998 9988876643
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-06 Score=82.12 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=48.8
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-----CCCeEEEEeccCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGF 160 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~-----~~~~i~~v~q~~~ 160 (313)
++.+...+.+|++++|+|+||+|||||++.|+|... +..|+|.+++.. ....+.+++++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~ 250 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDDSKGRHTTTHRELHPLPSGGL 250 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECCCCCcchhhhccEEEecCCCe
Confidence 344556678999999999999999999999999998 999999876532 2234677777754
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-06 Score=85.29 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=41.9
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+...|
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG 198 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIG 198 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEe
Confidence 389999 9999999999999999999999999999998 8887665443
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.8e-06 Score=75.10 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|++++|+||+|||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999873
|
|
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-06 Score=83.35 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=43.5
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.+++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.+...|+
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ge 173 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGE 173 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEcc
Confidence 389999 9999999999999999999999999999998 88888766554
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-06 Score=69.90 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=35.9
Q ss_pred HHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 247 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 247 l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
+...++.+++++.+.+....|++.|. |.+.+.+..++... .+ ....+..||++|+|..
T Consensus 120 ~~~~~D~vv~V~~~~~~~~~Rl~~R~---~~s~~~~~~r~~~q-~~----~~~~~~~ad~vI~N~~ 177 (188)
T TIGR00152 120 LRSLCDRVIVVDVSPQLQLERLMQRD---NLTEEEVQKRLASQ-MD----IEERLARADDVIDNSA 177 (188)
T ss_pred cHHhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhc-CC----HHHHHHhCCEEEECCC
Confidence 44556667778888777777776544 55555555544432 11 2345677999998763
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-06 Score=75.06 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|++++|+||||||||||+++|++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999875
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-06 Score=82.65 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.++.+.+++.|... +.+++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|...|+
T Consensus 130 ~~~r~~i~~~l~TG---iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGe 192 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGE 192 (432)
T ss_pred chheechhhccCCC---CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCC
Confidence 46677788777532 2378875 9999999999999999999999999999998 88887765543
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-06 Score=79.40 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...| ...++++..|.+. ....|.+..
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~---~~~G---------~~~V~lit~D~~R-----~ga~EqL~~ 188 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV---MRFG---------ASKVALLTTDSYR-----IGGHEQLRI 188 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEeccccc-----ccHHHHHHH
Confidence 6777888899999999999999999999999998763 1112 1347788877541 245566666
Q ss_pred HHHhcCCC
Q 021380 176 AHARRGAP 183 (313)
Q Consensus 176 ~~~~~~~~ 183 (313)
+....+.+
T Consensus 189 ~a~~~gv~ 196 (374)
T PRK14722 189 FGKILGVP 196 (374)
T ss_pred HHHHcCCc
Confidence 66666654
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-06 Score=79.00 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=34.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.+|++++|+||||+||||++..|++.+. +..|+|.+-+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 5799999999999999999999999998 777777664433
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-06 Score=83.40 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=48.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
++-..++.-+... +.+++ .+|.+.+|++++|+|+||+|||||+++|+++.+ |+.|.|.+.|.
T Consensus 115 ~~R~~i~~~l~tG---i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGe 176 (418)
T TIGR03498 115 MSRARVGEPLDTG---VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGE 176 (418)
T ss_pred hhccCcccccCCc---cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEee
Confidence 3334444444322 22665 699999999999999999999999999999998 99998776554
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-05 Score=62.66 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+||+|||||||.+.|+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-06 Score=81.52 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=50.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.++-..++..|... +.+++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.+.+...|.
T Consensus 111 ~~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGe 173 (411)
T TIGR03496 111 PLKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGE 173 (411)
T ss_pred HHhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEec
Confidence 45556677777522 2389888 9999999999999999999999999999998 88776654443
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-06 Score=83.05 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=42.0
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---ceeeeCCCC
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK 147 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~---G~i~~~~~~ 147 (313)
+++++.+ |.+.+|++++|+|+||+|||||+++|+++.+ ++. |.|.+.+.+
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~e 215 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGRE 215 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeE
Confidence 3367655 9999999999999999999999999999987 775 777666643
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=87.40 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=35.4
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~ 145 (313)
+++....+.++||+|++|+|||||++.+.+.+.. ...|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeec
Confidence 4677889999999999999999999999777652 4467766643
|
syringae 6; Provisional |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-06 Score=86.11 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCccCCCCCccCCCcchhhhhcccC--ccEEEEcCcccccCh-------hhHHHHHHhhcCeEEEEcChHHHHH--HHH
Q 021380 201 QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG-------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 201 ~~~~~~~~LSgGekqRv~la~al~~~--a~~li~d~~~llLDE-------~~~~~l~~l~~~~i~vtHd~~~~~~--rvi 269 (313)
..++...+|||||.||+.||..+-.. .=+.++|+|-+.|-+ .+++.|+++-+.+|+|.||.+.+.. +++
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 45778889999999999998887432 234578999888887 3444555554557899999999887 666
Q ss_pred ----------hhhhccCChhHHHHH
Q 021380 270 ----------KRHISTGKPPDVAKW 284 (313)
Q Consensus 270 ----------gr~v~~G~~~e~~~~ 284 (313)
|++++.|+++++...
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 799999999998764
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-06 Score=82.62 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=35.8
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4489999 9999999999999999999999999999876
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-05 Score=66.38 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|+||+||||||+++.|++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999999885
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-06 Score=81.41 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=42.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.+.|...|.
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGe 193 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGE 193 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCc
Confidence 89999 9999999999999999999999999999887 77777765554
|
|
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-06 Score=82.01 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=34.6
Q ss_pred cccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 94 ~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 3478777 9999999999999999999999999999775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 313 | ||||
| 3c8u_A | 208 | Crystal Structure Of Putative Fructose Transport Sy | 4e-17 | ||
| 2ga8_A | 359 | Crystal Structure Of Yfh7 From Saccharomyces Cerevi | 9e-15 |
| >pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208 | Back alignment and structure |
|
| >pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 2e-72
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 20/223 (8%)
Query: 86 VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145
AL Q +L L + +V L+G PG+GKSTL+ + ++
Sbjct: 3 TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP-------- 52
Query: 146 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 205
A V+PMDGFHL L+ P+ R+GAP TF+ L++Q V
Sbjct: 53 ------AEVVPMDGFHLDNRLLE----PRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102
Query: 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 265
P FD + VG + +V I++GNYL D W+D+++++D +EV +
Sbjct: 103 YPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLE 162
Query: 266 QRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
R+++R + G D A R + ND NA I ++ ADL
Sbjct: 163 ARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTW 205
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 2e-66
Identities = 63/306 (20%), Positives = 108/306 (35%), Gaps = 47/306 (15%)
Query: 43 RRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALAS 102
+ + + + ++ E+ + D V D Q P A
Sbjct: 58 EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114
Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
N + + G + A V +N + S ++A ++PMDGFHL
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVPMDGFHL 166
Query: 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------------------- 201
LD +DP+ AH RRG+P TF+ L K L
Sbjct: 167 SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKL 226
Query: 202 --------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
++ P F+H + DP D + ++VI++G YL D WK + +
Sbjct: 227 SKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLAD 286
Query: 254 K-----WFIEVDLDTAMQRVLKRHISTGKPPDV--AKWRIEYNDRPNAELIMKSKKNADL 306
+ I++D + +RV KRH+ +G + + + ND N I D
Sbjct: 287 TGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNHLIKVDN 346
Query: 307 VIKSID 312
++ +
Sbjct: 347 IVHIRN 352
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 87 YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146
LA +L N + V L G PG+GKST+A E+ + IN+ + S + +
Sbjct: 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63
Query: 147 KP--PDVATVLPMDGFH-LYLSQLDAMED 172
+ V +D L +++ M +
Sbjct: 64 EVNDRLKPMVNLVDSLKTLQPNKVAEMIE 92
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 1e-36
Identities = 39/254 (15%), Positives = 85/254 (33%), Gaps = 47/254 (18%)
Query: 87 YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
Y + R N + I+ +AG GKST A + +++ +
Sbjct: 57 YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR---- 112
Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
++ DGF L + ++G P +++ L+ + +L++
Sbjct: 113 --------VELITTDGFLHPNQVLKE----RGLMKKKGFPESYDMHRLVKFVSDLKSGVP 160
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKWF 256
+V AP + H + D + D +Q ++I++G + VS D +
Sbjct: 161 NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIY 220
Query: 257 IEVDLDTAMQRVLKRHISTGKPP--DVAKWRIEYND------------------RPNAEL 296
++ D + R + + D + Y N +
Sbjct: 221 VDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQ 280
Query: 297 -IMKSKKNADLVIK 309
I+ +++ A L++
Sbjct: 281 NILPTRERASLILT 294
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-34
Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 39/240 (16%)
Query: 92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 151
L + V I+G+AG GKST A + + +
Sbjct: 75 AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------ 122
Query: 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFD 210
++ DGF ++L + R+G P ++N L+ + ++++ AP +
Sbjct: 123 VDLVTTDGFLYPNAELQR----RNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYS 178
Query: 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
H D + V ++I++G + G VS +FD +++ ++ Q +
Sbjct: 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGP-TLMVSDLFDFSLYVDARIEDIEQWYVS 237
Query: 271 RHISTGKP--------------------PDVAKWRIEYNDRPNA-ELIMKSKKNADLVIK 309
R ++ A+ +RPN E I+ ++ A LV++
Sbjct: 238 RFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLR 297
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-34
Identities = 47/254 (18%), Positives = 86/254 (33%), Gaps = 47/254 (18%)
Query: 87 YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
Y Q L + I+G+AG GKST + + +++
Sbjct: 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---- 124
Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
V+ DGF ++L+ + R+G P +++ LL L +++ Q
Sbjct: 125 --------VEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWF 256
+V P + H D V + Q +VI++G + G + VS FD F
Sbjct: 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLF 232
Query: 257 IEVDLDTAMQRVLKRHI----STGKPPDVAKWRIEYNDRPNA-----------------E 295
++ + + R + +T K P + E
Sbjct: 233 VDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLME 292
Query: 296 LIMKSKKNADLVIK 309
I+ K A L+++
Sbjct: 293 NILPYKNRAQLILE 306
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-24
Identities = 31/228 (13%), Positives = 77/228 (33%), Gaps = 35/228 (15%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
+ + D L + +L A + ++G+ G +GK+TLA ++ + + +
Sbjct: 3 LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS----- 52
Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRNQ 201
V MD + ++ + + ++ L + L+
Sbjct: 53 ---------VCVFHMDDHIVERAKRYHTGNEE---WFEYYYLQWDVEWLTHQLFRQLKAS 100
Query: 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261
+ P +DH + + + +++++G +L K+ FD +++
Sbjct: 101 HQLTLPFYDHETDTHSKRTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFVVYLDCPR 154
Query: 262 DTAMQRVLKRHISTGKPPDVAKWRIEYND-RPNAELIMKSKKNADLVI 308
+ R + ++ K+ Y + K AD+V
Sbjct: 155 EIRFARENDQV-----KQNIQKFINRYWKAEDYYLETEEPIKRADVVF 197
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 3e-20
Identities = 40/205 (19%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKST+ +++ + + + + +L D F+ L+
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTA-- 75
Query: 169 AMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
+ K + P F+ L+ LKN+ +V P++D + + +V
Sbjct: 76 -EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-P 133
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 286
VV+ +G +F +++ MF + F++ D D + R + R + G+ + +
Sbjct: 134 ADVVLFEGILVFYS----QEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQY 189
Query: 287 EYNDRPNAEL-IMKSKKNADLVIKS 310
+P E + +KK AD++I
Sbjct: 190 TTFVKPAFEEFCLPTKKYADVIIPR 214
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-20
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKS++ A++V+ + + + +L D F+ L+
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ P F+ L+L LK + +V P +D E+ + V
Sbjct: 75 -KAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 132
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIE 287
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 133 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYI 188
Query: 288 YNDRPNAEL-IMKSKKNADLVIKS 310
+P E + +KK AD++I
Sbjct: 189 TFVKPAFEEFCLPTKKYADVIIPR 212
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-17
Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 44/204 (21%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+G++G +GK+TLA + + K P +V+ D F S++
Sbjct: 23 IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEI- 63
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
E K + N +++ + S D +
Sbjct: 64 --ETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEE----------IP 111
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
++I++G LF K + ++++ +F+ + + +R R +PPD + +
Sbjct: 112 ILIIEGFLLFNY----KPLDTIWNRSYFLTIPYEECKRR---RSTRVYQPPDSPGY---F 161
Query: 289 ND--RPNAEL-IMKSKKNADLVIK 309
+ P + + V+
Sbjct: 162 DGHVWPMYLKYRQEMQDITWEVVY 185
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-16
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 37/209 (17%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G+AG +GK+TLA + + A + +V +LPMD ++ L L
Sbjct: 8 VIGIAGGTASGKTTLA----QAL-------ARTLGERV------ALLPMDHYYKDLGHLP 50
Query: 169 AMEDPKEAHARRG-----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223
R P F+ L L + L V P +D V
Sbjct: 51 --------LEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102
Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVA 282
VVI++G + K++ + D K F++ D D R LKR + G+ +
Sbjct: 103 R-PAPVVILEGILVLYP----KELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGV 157
Query: 283 KWRIEYNDRPNAEL-IMKSKKNADLVIKS 310
+ +P + +K+ AD+++
Sbjct: 158 VAQYLEQVKPMHLHFVEPTKRYADVIVPR 186
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 4e-15
Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 31/220 (14%)
Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
KH I+ + G GAG ST V ++I+ ++ A + D FH +
Sbjct: 3 KKHPIISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFN 48
Query: 165 SQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
E + A F+ L + G ++ H +
Sbjct: 49 RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 108
Query: 220 DILVGL---------QHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
+ G ++ +G + + +++ + D K + ++ + +
Sbjct: 109 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLKIGVVPVINLEWIQKIH 167
Query: 271 RHIST-GKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309
R +T G + I I+ D+ +
Sbjct: 168 RDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQ 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 5e-12
Identities = 69/382 (18%), Positives = 114/382 (29%), Gaps = 96/382 (25%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPV--FGKTRSL 58
D + P++ LS + G L W + + V F + L
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87
Query: 59 VQN----KTSLKVLCSQRREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
N + +K Q + + D +Y A+ RL P L +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVR--RI-----NKI-WPQKASSFDSQVKPPDVATVLP 156
V + G G+GK+ +A +V ++ KI W + + P V +L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEMLQ 203
Query: 157 MDGFHL---YLSQLDAMEDPK-EAHARRGAPWTFNPLLLL----NCLKNLRNQGSVYAP- 207
+ + + S+ D + K H+ + LL NCL L N V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLN---VQNAK 257
Query: 208 ---SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD---- 260
+F+ IL+ + K V D FL +S +
Sbjct: 258 AWNAFNLSC------KILLTTRFKQVT-D----FLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 261 ----LDTAMQRVLKRHISTGKP-----------PDVAKW-RIEYNDRPNAELIMKSKKNA 304
LD Q L R + T P +A W ++ + I++S N
Sbjct: 307 LLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 305 -----------DLVI--KSIDI 313
L + S I
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI 387
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 60.0 bits (144), Expect = 1e-10
Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 28/213 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
+ +GP G+GKS + ++ + + + + S +D F+L
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81
Query: 169 AMEDPKEAH---ARRGAPWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGD 215
+ + + + RG P T + LL L + N Y S G GD
Sbjct: 82 KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141
Query: 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL----DTAMQRVLKR 271
+ L + I++G +L + + ++ ++V+ + +
Sbjct: 142 RCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPE 201
Query: 272 HISTGKPPDVAKWRIEYNDRPNAELIMKSKKNA 304
S G Y R E + SK
Sbjct: 202 IKSLGIVFTTDNINNVYGWRLQQEHELISKVGK 234
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 6e-05
Identities = 22/186 (11%), Positives = 50/186 (26%), Gaps = 44/186 (23%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
K + + GP G GKST + +++ + + D + +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDN------------------SAYIEGDIINHMVVG 43
Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
P E+ W + + N + D+ + + +Q
Sbjct: 44 --GYRPPWESDELLALTWK----NITDLTVNFLLAQNDVV--LDYIAFPDEAEALAQTVQ 95
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 286
KV V+ ++ L + + ++R R +
Sbjct: 96 AKVDDVEIRFIIL------------------WTNREELLRRDALRKKDEQMGERCLELVE 137
Query: 287 EYNDRP 292
E+ +
Sbjct: 138 EFESKG 143
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
+ + +VE+R + AL+ +LL A+ +G+ G PGAGKST +
Sbjct: 26 QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
R I + E+R + A + L+ A+ VG+ G PG GKST + +
Sbjct: 25 RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
R I +VE+ + AQ+LL L + H VG+ G PG GKST + +
Sbjct: 49 RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
+ + + VGL+GPPGAGKST + +
Sbjct: 50 AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 8e-04
Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 51/203 (25%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++ + G PG+GKS A + R G + D
Sbjct: 3 VILITGMPGSGKSEFAKLLKER----------------------------GAK-VIVMSD 33
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ ++ ++ P L++ K LR D V +++ H
Sbjct: 34 VV---RKRYSIEAKP----GERLMDFAKRLREIYG------DGVVARLCVEELG-TSNHD 79
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 288
+V+ DG + +K + + +R+++R D +K E
Sbjct: 80 LVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIER-----LRSDDSKEISEL 134
Query: 289 NDRPNAEL---IMKSKKNADLVI 308
R EL I + AD +I
Sbjct: 135 IRRDREELKLGIGEVIAMADYII 157
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 313 | |||
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.98 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.97 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.97 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.97 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.97 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.97 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.94 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.94 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.93 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.93 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.92 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.9 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.89 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.86 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.86 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.84 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.84 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.83 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.83 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 99.82 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.81 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.79 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 99.78 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.78 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.76 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.74 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.74 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.73 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.73 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.72 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.72 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.7 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.68 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.67 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.64 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.64 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.61 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.6 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.58 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.58 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.56 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.52 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.5 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.5 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.5 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.49 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.46 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.46 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.44 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.44 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.42 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 99.41 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.4 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.39 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.36 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.35 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.35 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.34 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.32 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.29 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.29 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.28 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.27 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.27 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.26 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.26 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.26 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.25 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.24 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.24 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.24 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.24 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.23 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.22 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.21 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.21 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.17 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.15 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 99.13 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.12 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.12 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.11 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.11 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.1 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.06 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.06 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 99.05 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.03 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 99.03 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 99.0 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.0 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 99.0 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.98 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.97 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.94 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.9 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.89 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.85 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.84 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.81 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.8 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.79 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.78 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.77 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.73 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.68 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.66 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.63 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.63 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.62 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.57 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.57 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.57 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.51 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 98.51 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.5 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.49 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.46 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.45 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.37 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.36 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.34 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.34 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.32 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.31 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.3 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 98.3 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.29 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.28 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.27 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 98.25 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.24 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 98.23 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.19 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 98.14 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.14 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.12 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.11 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 98.1 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.1 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.07 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.06 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.05 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.04 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 98.04 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.02 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.0 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.0 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.99 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.96 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.94 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.93 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.9 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.89 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.89 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.88 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.78 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.77 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.75 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.75 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.69 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 97.69 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.66 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.59 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.58 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.55 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.53 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.52 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.51 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.5 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.48 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.48 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.47 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.45 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.43 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.41 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.41 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.4 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.36 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.32 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.31 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.27 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.26 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.26 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.26 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.25 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.25 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.24 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.23 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.23 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.22 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.21 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.2 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.2 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.18 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.15 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.15 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.13 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.12 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.11 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.11 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.11 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.1 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.09 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 97.09 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.09 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.08 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.07 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.07 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.06 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.03 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.03 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.02 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.0 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.99 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.94 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.94 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.93 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.93 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.93 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.88 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.87 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.82 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.82 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.82 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.81 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.81 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.8 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.8 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.79 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.79 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.78 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.76 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.71 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.71 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.71 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.71 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.67 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.67 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.64 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.63 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.59 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.58 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.57 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.57 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.57 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.56 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.56 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.53 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.53 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.53 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.52 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.51 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.5 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.5 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.49 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.49 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.48 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.48 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.47 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.45 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.45 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.45 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.45 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.44 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.43 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.43 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.43 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.42 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.42 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.42 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.41 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.41 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.4 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.4 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 96.4 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.39 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.38 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.36 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.36 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.35 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.35 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.35 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.35 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.34 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.33 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.33 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.32 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.32 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.31 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.3 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.3 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.3 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.29 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.29 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.29 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.28 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.28 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.28 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.28 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.27 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.25 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.25 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.24 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.24 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.23 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.22 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.21 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.21 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.21 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.21 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.2 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.2 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.19 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.19 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.19 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.18 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.18 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.18 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.18 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.18 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.17 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 96.16 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.16 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.15 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.15 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.15 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.14 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.13 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.13 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.12 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.12 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.12 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.11 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.1 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.09 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.08 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.07 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.07 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.06 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.06 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.06 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.05 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.05 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.05 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.05 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.02 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.02 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.01 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.01 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.99 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.99 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.95 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.95 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.93 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.93 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.92 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.91 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.91 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.9 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.89 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.88 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.87 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.86 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.86 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.84 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.84 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.82 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.82 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.81 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.8 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.8 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.77 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.75 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.75 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.75 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.73 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.72 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.71 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.7 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.7 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.7 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.69 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.66 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.64 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.63 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.62 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.61 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.6 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.59 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.56 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.56 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.52 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.51 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.51 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.51 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.48 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.45 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.45 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.44 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.38 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.36 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.3 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.3 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.29 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.28 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.27 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.26 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.24 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.24 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 95.19 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.16 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 95.14 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.07 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 95.0 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 94.99 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.98 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.96 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.95 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.92 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.91 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 94.91 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.9 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.86 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.84 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.83 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 94.82 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.79 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.77 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.74 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.73 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.66 | |
| 2ck3_D | 482 | ATP synthase subunit beta\, mitochondrial; hydrola | 94.65 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.65 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.65 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.62 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.62 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 94.61 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 94.61 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.61 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 94.57 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.57 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 94.51 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.5 |
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-43 Score=326.47 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=168.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||+|.|++.. +|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 3799999999999877 9999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|+||+...+ +++||.+|+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 76 ~~~~r~ig~vfQ~~~l~--p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLF--PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CGGGSCCEEECTTCCCC--TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred chhhCCEEEEeCCCcCC--CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 24699999996433 359999999987665555555556778899999883 46788889999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHH----HHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKD----VSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~----l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||....+. +.++.. .+||||||++++.. |++ |++++.|++.++..
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999944333 333332 25799999999987 655 99999999988754
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=323.20 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=170.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
+++||+++||+|.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 34589999999999753222349999999999999999999999999999999999999 9999999999653
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la 220 (313)
++.++|+||++..++ .+||.+|+.++...++.+.....+++.++|+.++. ..++++.+|||||||||+||
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 235999999964333 58999999998877766555556678899999983 46778889999999999999
Q ss_pred hhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+|++.++++|++|+|+..||+ .+++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999 44555555532 25799999999876 555 99999999888753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=326.86 Aligned_cols=200 Identities=15% Similarity=0.150 Sum_probs=170.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45799999999999877 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|+||+...+ +.+||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~VfQ~~~l~--p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 74 ERGVGMVFQSYALY--PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp GSCEEEECTTCCCC--TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCEEEEecCCcCC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence 24699999996433 359999999998877766655556778899999883 46788889999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.|++.++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999998 44555555543 25799999999987 555 99999999988754
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=316.22 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=167.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 44699999999998776 9999999999999999999999999999999999999 9999999998643
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 74 DRNVGLVFQNWALY--PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp GTTEEEECTTCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HCcEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 24699999996433 358999999998766554433345678889999884 45678889999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||. .+++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 44445555432 25799999999876 554 89999999988754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=315.31 Aligned_cols=201 Identities=16% Similarity=0.225 Sum_probs=168.2
Q ss_pred CCCeEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 74 EIPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
+.++|+++||+|.| ++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp CCEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCC
T ss_pred CCceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCC
Confidence 44589999999999 7766 9999999999999999999999999999999999999 9999999998643
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...+ +.+||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++
T Consensus 84 ~~~r~ig~v~Q~~~l~--~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 84 PQKRNVGLVFQNYALF--QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp GGGSSEEEECGGGCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhCcEEEEecCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 24699999995433 358999999998766554433445678889999883 467788899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999994 4444544432 25799999999876 554 89999999988754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=303.91 Aligned_cols=200 Identities=16% Similarity=0.203 Sum_probs=163.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 22 ~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred hheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence 34799999999998776 9999999999999999999999999999999999999 99999999986431
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
+.++|++|+...+ +.+|+.+|+.+.. ..++.+.....+++.++++.++. ..++++.+|||||||||+||+
T Consensus 95 ~~~~~~~i~~v~Q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLF--PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp HHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCcCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 2499999996433 3589999999864 33443322334567888998884 456778899999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++.++++|++|||+..||+ .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999 44445554433 25799999999875 544 88888898887754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=316.99 Aligned_cols=200 Identities=15% Similarity=0.171 Sum_probs=165.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 44699999999998776 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++|+.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 74 YREVGMVFQNYALY--PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp GTTEEEECSSCCCC--TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 24699999995433 358999999987544433322334567889999883 46778889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999994 4444544432 25799999999876 554 89999999988754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=308.51 Aligned_cols=201 Identities=17% Similarity=0.132 Sum_probs=167.5
Q ss_pred CeEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++|+++||++.|++ .. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~ls~~y~~~~~----~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTH----ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEEECTTSCE----EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHH
T ss_pred cEEEEEEEEEEECCCCe----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCccccc
Confidence 47999999999975 34 8999999999999999999999999999999999999 9999999999754
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..... .+||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 1359999998632222 37999999998776665544445678889999883 4577888999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhh-c---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~-~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++.++++|++|+|+..||+ .+++.|.++. + .+|+||||++++.. |++ |++++.|++.++...
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999998 4555555554 2 25799999998875 555 899999999987643
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=316.17 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=162.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 55799999999998776 9999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 82 ~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 82 DRNISMVFQSYAVW--PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 24599999995433 358999999986544443333334567889998883 46788889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999993 4445544432 25799999999876 554 89999999988754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=316.38 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=167.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+||||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998776 9999999999999999999999999999999999999 9999999998532
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...+ +++||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALY--PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp EECCGGGSSEEEECSCCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence 24599999995433 359999999998776654433345678889998883 46778889999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+|++.++++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999994 4444544432 25799999999876 554 89999999988754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=295.92 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=150.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred CcEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 99999999986531
Q ss_pred -------CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhh
Q 021380 150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 -------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la 220 (313)
+.++|++|++..+ +.+|+.+|+.++...++.+.....+++.++++.++. ..++++.+||||||||++||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 3599999996433 358999999987665543323334567888998884 35677889999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
++++.+++++++|||+..||.. +++.|.++.+ .+|++|||++++
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 153 RALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9999999999999999999993 4444544432 257999999886
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=300.94 Aligned_cols=201 Identities=13% Similarity=0.080 Sum_probs=163.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
.|++|+++||++.|++.. +|++|||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence 588999999999998776 9999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++. ..++++.+||||||||++||++++
T Consensus 85 ~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp HHHTTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred HHhhcEEEEcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 35999999965333 58999999987655443322223567788888884 346778899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999 44455555432 25799999998865 544 88888888887754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=300.97 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=162.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
+|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999998776 9999999999999999999999999999999999999 99999999986532
Q ss_pred --------------CeEEEEeccCCCCCcccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhhc--C-CCccCCCCCc
Q 021380 150 --------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--Q-GSVYAPSFDH 211 (313)
Q Consensus 150 --------------~~i~~v~q~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~-~~~~~~~LSg 211 (313)
+.++|++|+...+ +.+|+.+|+.+.. ..++.+.....+++.++++.++. . .++++.+|||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLW--SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCcccC--CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 2499999995433 3589999999854 33333322334567888999884 3 5677889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
||||||+||+|++.++++|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999 34445544433 25799999999875 544 88888898
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
+.++..
T Consensus 237 ~~~~~~ 242 (262)
T 1b0u_A 237 PEQVFG 242 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=312.07 Aligned_cols=202 Identities=14% Similarity=0.104 Sum_probs=164.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. ..+|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~i~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGGGT--EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECCEe--eeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 45799999999997531 017999999999999999999999999999999999999 9999999998531
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...+ +++|+.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALY--PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp SSCGGGSCEEEEETTSCCC--TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 24699999996433 358999999987655444433345678889999883 467788899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++.++++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999994 4445544432 25799999999876 554 89999999988754
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=298.80 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=165.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
+++|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 46899999999999877 9999999999999999999999999999999999999 99999999997532
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.++|++|+....+ .+|+.+|+.++...+ ......+++.++++.++. ..++++.+||||||||++||+|++
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp HHHHHEEEECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHhheEEEEecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 34899999865433 489999998865433 233456678889999884 356778899999999999999999
Q ss_pred c------CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~------~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
. ++++|++|||+..||+ .+++.|.++.+ .+|+||||++++.. |++ |++++.|+++++..
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999998 44555555532 24799999999876 554 89999999988753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=295.72 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=156.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||++.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999753222338999999999999999999999999999999999999 99999999996532
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhc---CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcch
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~ 218 (313)
+.++|++|++..++ .+|+.+|+.++.... ..+.....+++.++++.++.. .++++.+||||||||++
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 24999999965333 489999999876543 222223345677888888843 36778899999999999
Q ss_pred hhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~ 281 (313)
||+|++.++++|++|||+..||+ .+++.+.++.+ .+|+||||++.+.. |++ |++++.+++.++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999999998 44555555532 25799999986422 444 777777665553
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=290.57 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=158.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999986531
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhhc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al 223 (313)
+.++|++|++..++ .+|+.||+.++.. .........+.+.++++.++ ...++++.+||||||||++||+++
T Consensus 78 ~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFP--ELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCT--TSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEecCCccCC--CCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 23999999964333 4899999987531 11222233455677888773 345778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.++++|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999 34445544432 25799999988765 544 8888888887764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=306.14 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=161.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------D 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------~ 150 (313)
||+++||+|.|++. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.. +
T Consensus 1 ml~~~~l~~~y~~~-----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECCE-----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 48999999999752 8999999999999999999999999999999999999 99999999986532 3
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+...+ +++|+.+|+.++...++.+. . +++.++++.++. ..++++.+|||||||||+||+|++.+++
T Consensus 73 ~ig~v~Q~~~l~--~~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLF--PHMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCC--TTSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccC--CCCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 599999995433 35899999999876554432 2 678889999884 4577888999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+|++|+|+..||. .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++.
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999 44455555432 25799999999876 554 8888899988874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=298.25 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=160.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 56899999999998876 9999999999999999999999999999999999999 99999999986531
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHh--cC-----------CCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.++|++|++..+ +.+|+.+|+.+.... .+ .......+++.++++.++. ..++++.+||
T Consensus 78 ~~~~~~i~~v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp HHHHHTEEECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHhCCEEEEccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 2499999996433 358999999875432 12 1222234567888898883 4577888999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||||||+||+|++.++++|++|||+..||+ .+++.|.++.+ .+|++|||++++.. |++ |++++.|
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999 34445544433 25799999998765 554 8888888
Q ss_pred ChhH
Q 021380 277 KPPD 280 (313)
Q Consensus 277 ~~~e 280 (313)
++.+
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 8887
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=297.84 Aligned_cols=200 Identities=13% Similarity=0.029 Sum_probs=159.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
++|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 4799999999998776 9999999999999999999999999999999999999 99999999986543
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~l 219 (313)
+.++|++|+....+...+|+.+|+.++... ++.+.....+++.++++.++. ..++++.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 359999998543333346999999874211 111222234567788888884 4577888999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---Ce--EEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK--WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~--i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|+|++.++++|++|||+..||+ .+++.|.++.+ .+ |++|||++++.. |++ |++++.|+++++.
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999 34444544432 47 899999998755 554 8888888887764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=289.80 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=160.8
Q ss_pred eEEEccceeEcc--c---cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---
Q 021380 77 VVEARCMDEVYD--A---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~--~---~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--- 148 (313)
||+++||++.|+ + +. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK----ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHH
T ss_pred EEEEEEEEEEecCCCccccc----eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchH
Confidence 599999999997 3 34 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++...+. .+|+.+|+.+....+ .+.....+++.++++.++.. .++++.+||||||||++||++
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAra 152 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFF-AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 152 (266)
T ss_dssp HHGGGEEEECSSGGGGCC-CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcC-CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHH
Confidence 2459999998522222 379999998754332 23333456788899998865 567788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++.++++|++|+|+..||. .+++.|.++.+ .+|++|||++.+.. |++ |+++..|++.++...
T Consensus 153 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999 34445554432 25799999998765 544 888888888877643
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=283.04 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=155.7
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
+||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+ .+.++|
T Consensus 3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~-----~~~i~~ 70 (253)
T 2nq2_C 3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV-----YQSIGF 70 (253)
T ss_dssp EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE-----CSCEEE
T ss_pred ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE-----eccEEE
Confidence 3799999999998 666 9999999999999999999999999999999999999 99999984 345999
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhc-C---CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
++|++..++ .+|+.+|+.++...+ + .+.....+++.++++.++. ..++++.+||||||||++||++++.+++
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999965433 479999998864322 2 1122334567888888883 3567788999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |+ ++.|++.++.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 9999999999999 34555555533 25799999999865 444 78 8888877764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=274.66 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=149.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i 152 (313)
.+|+++||++.|++ . +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.+
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 47999999999987 6 9999999999999999999999999999999999999 9999999998642 3569
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
+|++|++..+ +.+|+.+|+.+....++. .. ..+++.++++.++... ++++.+||||||||++||++++.++++++
T Consensus 81 ~~v~q~~~~~--~~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 81 FFLPEEIIVP--RKISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEECSSCCCC--TTSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeCCCcCC--CCCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999996543 348999999987655443 22 2567788999988433 67778999999999999999999999999
Q ss_pred EcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|||+..||. .+++.|.++.+ .+|++|||++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999 34444544432 25799999988654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=285.60 Aligned_cols=193 Identities=13% Similarity=0.073 Sum_probs=156.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
||+++||++.|++ +|+|+||+|++ +++||+||||||||||+|+|+|+++ |++|+|.++|.+. .+
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 4789999999964 59999999999 9999999999999999999999999 9999999998542 34
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..+ +.+|+.+|+.+....++. ....+++.++++.++. ..++++.+||||||||++||++++.+++
T Consensus 71 ~i~~v~q~~~l~--~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALF--PHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCC--TTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccC--CCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 689999996433 358999999875322221 1124567888898884 3567788999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999 44555555432 35799999998766 444 88888898888754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=280.61 Aligned_cols=196 Identities=19% Similarity=0.070 Sum_probs=151.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCCC---
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~~--- 149 (313)
|+||+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 45799999999998766 99999999999999999999999999999999998 77 99999999986532
Q ss_pred ------CeEEEEeccCCCCCcccCCcccCHHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCC-CCccCCCc
Q 021380 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGDP 216 (313)
Q Consensus 150 ------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~-LSgGekqR 216 (313)
..++|++|++..++ .+|+.+|+.+.... .+. ......+++.++++.++.. .++++.+ ||||||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred HHHHHhCcEEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 23789999865433 58999999876432 221 1112235677888888852 4667778 99999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH----HHH----hhhhccCChh
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~----rvi----gr~v~~G~~~ 279 (313)
++||++++.++++|++|+|+..||.. +++.|.++.+. +|++|||++++.. |++ |++++.|++.
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999994 45555555332 4799999987753 444 8888888876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=274.94 Aligned_cols=192 Identities=17% Similarity=0.155 Sum_probs=153.6
Q ss_pred eEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.| ++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 5555 9999999999999999999999999999999999999 9999999998532
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--C-----------CccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--G-----------SVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-----------~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.++.. .....+.+.++++.++.. . +.++.+||||||
T Consensus 74 ~~~~i~~v~q~~~l-~~--~tv~enl~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 74 WRSQIGFVSQDSAI-MA--GTIRENLTYGLE-----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp CTTTCCEECCSSCC-CC--EEHHHHTTSCTT-----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhhEEEEcCCCcc-cc--ccHHHHHhhhcc-----CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 3458999999643 32 599999876421 112345567777777632 1 134569999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+|+..||. .+++.|.++.. .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999 56666665543 25799999998754 444 8888899988875
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 226 ~ 226 (243)
T 1mv5_A 226 A 226 (243)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=283.42 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=153.7
Q ss_pred CeEEEccceeEccc---cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC---
Q 021380 76 PVVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~---~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--- 149 (313)
.+|+++||++.|++ .. +|++|||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCC
Confidence 36999999999976 44 9999999999999999999999999999999999999 99999999996531
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCcc------HHHHHHHHHHh--h--cCCCccCCCCCccCC
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN------PLLLLNCLKNL--R--NQGSVYAPSFDHGVG 214 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~------~~~~~~~l~~l--~--~~~~~~~~~LSgGek 214 (313)
+.++|++|++.. +. .|+.+|+.++.... ..... ...+.++++.+ + ...++++.+||||||
T Consensus 88 ~~~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~ 162 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLL-FG--RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQR 162 (271)
T ss_dssp HHHHHHHEEEECSSCCC-CS--SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHH
T ss_pred HHHHhccEEEEecCCcc-cc--ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHH
Confidence 359999999643 32 59999998742211 11000 01123455555 2 234677889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 280 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e 280 (313)
||++||++++.++++|++|+|+..||. .+++.|.++.. .+|+||||++++.. |++ |++++.|++.+
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~ 242 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ 242 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999 45555555543 25799999998754 444 88888899888
Q ss_pred HHHH
Q 021380 281 VAKW 284 (313)
Q Consensus 281 ~~~~ 284 (313)
+...
T Consensus 243 l~~~ 246 (271)
T 2ixe_A 243 LMER 246 (271)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7643
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=278.15 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=154.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCCC---
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~~--- 149 (313)
+++|+++||++.|+++. +|+||||+|++|+++||+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 45799999999998766 99999999999999999999999999999999999 46 89999999986521
Q ss_pred ------CeEEEEeccCCCCCcccCCcccCHHHHHH-h---cCCC---CCccHHHHHHHHHHhhcC---CCccCC-CCCcc
Q 021380 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAP---WTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHG 212 (313)
Q Consensus 150 ------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~---~~~~---~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgG 212 (313)
..++|++|++..++ .+|+.+|+.+... . ++.. .....+++.++++.++.. .++++. +||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 168 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred HHHHhhCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 13899999965433 5899999877542 1 2221 111234677888888853 356666 59999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC---eEEEEcChHHHHH----HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~---~i~vtHd~~~~~~----rvi----gr~v~~G~ 277 (313)
||||++||+|++.++++|++|||+..||... ++.|.++.+. +|++|||++++.. |++ |++++.|+
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999944 4444444332 4799999987642 444 88888888
Q ss_pred hhHHH
Q 021380 278 PPDVA 282 (313)
Q Consensus 278 ~~e~~ 282 (313)
++++.
T Consensus 249 ~~~~~ 253 (267)
T 2zu0_C 249 FTLVK 253 (267)
T ss_dssp TTHHH
T ss_pred HHHHh
Confidence 87764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=282.51 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=152.3
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
.|+++||++.|++ .. +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 53 ~i~~~~vs~~y~~~~~----vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 53 RIEFENVHFSYADGRE----TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEESSTTCE----EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred eEEEEEEEEEcCCCCc----eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence 5999999999963 44 9999999999999999999999999999999999999 99999999997643
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCccCC
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgGek 214 (313)
+.++|++|++..+ . .|+++|+.++... ...+.+.+.++.++. + ......+||||||
T Consensus 126 ~r~~i~~v~Q~~~lf-~--~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLF-N--DTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHTEEEECSSCCCC-S--EEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HhcceEEEecCCccC-c--ccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 3599999997543 2 5999999865321 122334444443321 1 1234569999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||+|++.++++|++|+|+..||.. +++.|.++.. .+|+||||++.+.. |++ |++++.|++.++.
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999994 4444444433 25799999999876 555 9999999999887
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 277 ~~ 278 (306)
T 3nh6_A 277 SR 278 (306)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=272.91 Aligned_cols=190 Identities=16% Similarity=0.185 Sum_probs=149.7
Q ss_pred eEEEccceeEc--cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~v~~ls~~y--~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
-|+++||++.| ++.. +|++|||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 48999999999 3455 9999999999999999999999999999999999999 99999999996532
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccC
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGe 213 (313)
+.++|++|++.. +. .|+.+|+.++. + ....+++.++++.++. ..+.++.+|||||
T Consensus 80 ~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVL-LN--RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp HHHHHEEEECSSCCC-TT--SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred HHHhcEEEEeCCCcc-cc--ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 359999999653 32 59999987641 1 1223445555555542 1234567999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~ 281 (313)
|||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++.+.. |++ |++++.|++.++
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999993 4444444432 25799999997754 444 888888988776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 231 ~ 231 (247)
T 2ff7_A 231 L 231 (247)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=274.31 Aligned_cols=190 Identities=15% Similarity=0.121 Sum_probs=156.3
Q ss_pred eEEEccceeEccc----cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~----~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
||+++||++.|++ +. +|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~ 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence 4899999999986 55 9999999999 9999999999999999999999987 8999999998432
Q ss_pred -CCeEE-EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhc
Q 021380 149 -PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -~~~i~-~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++ |++|++.. .+|+.+|+.+....+ ....+++.++++.++.. .++++.+||||||||++||+++
T Consensus 72 ~~~~i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 72 NYIRYSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp CCTTEEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred HhhheEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 34689 99999643 489999998875443 22456678889988854 4567889999999999999999
Q ss_pred ccCccEEEEcCcccccChhh----HHHHHHhhcCeEEEEcChHHHHH----HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~----~~~l~~l~~~~i~vtHd~~~~~~----rvi----gr~v~~G~~~e~~~ 283 (313)
+.+++++++|+|+..||... ++.|.++.+.+|++|||++++.. |++ |++++.|+++++..
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999944 44444444446799999988754 333 88888888887754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=273.92 Aligned_cols=190 Identities=11% Similarity=0.100 Sum_probs=147.8
Q ss_pred CCeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeE
Q 021380 75 IPVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 75 ~~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i 152 (313)
|.+|+++||++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. +
T Consensus 1 M~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~-----i 68 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS-----V 68 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECSC-----E
T ss_pred CCeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCE-----E
Confidence 45799999999997 345 9999999999999999999999999999999999999 99999999883 8
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHH---HHHhhcC-------CCccCCCCCccCCCcchhhhh
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~---l~~l~~~-------~~~~~~~LSgGekqRv~la~a 222 (313)
+|++|++. ++ .+|+.+|+.+... .. ......+.+. ++.++.. .++++.+||||||||++||++
T Consensus 69 ~~v~Q~~~-~~--~~tv~enl~~~~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 69 AYVPQQAW-IQ--NDSLRENILFGCQ---LE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEECSSCC-CC--SEEHHHHHHTTSC---CC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEcCCCc-CC--CcCHHHHhhCccc---cC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999964 33 4799999976421 11 1112222222 2223211 245677999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhh-------c--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF-------D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~-------~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||....+.+.+++ . .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 99999999999999999996666555544 1 24799999987643 444 88888898888754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=273.47 Aligned_cols=187 Identities=19% Similarity=0.144 Sum_probs=152.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||++. . +|+|+||+|++|++++|+||||||||||+|+|+|+++ |+ |+|.++|.+.
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 7999999987 4 9999999999999999999999999999999999999 99 9999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...++ .+|+.+|+.+... .. . ..+++.++++.++. ..++++.+||||||||++||++++.+
T Consensus 72 ~~~i~~v~q~~~~~~--~~tv~e~l~~~~~-~~---~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPF--ATPVWHYLTLHQH-DK---T-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHEEEECSCCCCCT--TCBHHHHHHTTCS-ST---T-CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccCC--CCcHHHHHHHhhc-cC---C-cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 135999999965332 4899999876421 11 1 25667888898883 35677889999999999999999999
Q ss_pred cc-------EEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 227 HK-------VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 a~-------~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++ +|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|.++++.
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99 9999999999999 44555555432 25799999998865 444 8888888887764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=260.40 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=145.8
Q ss_pred CeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 76 ~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
.+|+++||++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++
T Consensus 5 ~~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~ 72 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS 72 (229)
T ss_dssp EEEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEE
T ss_pred ceEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEE
Confidence 4799999999995 344 9999999999999999999999999999999999999 9999999988 389
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------c----CCCccCCCCCccCCCcchhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~LSgGekqRv~la 220 (313)
|++|++.. +. .|+.+|+.++.. . ......+.++.++ . ..+.++.+||||||||++||
T Consensus 73 ~v~q~~~~-~~--~tv~enl~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 73 FCSQFSWI-MP--GTIKENIIFGVS-----Y--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp EECSSCCC-CS--BCHHHHHHTTSC-----C--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred EEecCCcc-cC--CCHHHHhhccCC-----c--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 99999653 32 499999876411 1 1112222322222 1 11234579999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhHHHHHHh-hc------CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++++.+++++++|+|+..||....+.+.++ .. .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999777777663 21 24799999988754 444 88888888877643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=283.36 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=152.2
Q ss_pred CeEEEccceeEc--cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 76 PVVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y--~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
..|+++||+|.| ++.. +|+||||+|++||+++|+||||||||||+|+|+|++ +++|+|.++|.+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCCh
Confidence 469999999999 5555 999999999999999999999999999999999998 57899999997632
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCC-----------CCcc
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPS-----------FDHG 212 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~-----------LSgG 212 (313)
+.++|++|+... +. +|+.+|+.+. .....+++.++++.++. ..++++.+ ||||
T Consensus 90 ~~~rr~ig~v~Q~~~l-f~--~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFI-FS--GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHHTEEEESCCCCC-CS--EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHHhCCEEEEcCCccc-Cc--cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 459999999643 32 6999987531 12345667788888773 33455555 9999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc------CeEEEEcChHHHHH--HHH----hhhhccCChhH
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 280 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e 280 (313)
|||||+||+|++.++++|++|+|+..||......+.+++. .+|++|||++.+.. |++ |++++.|++.+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999954444444332 25799999875544 555 89999999998
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 240 l~~ 242 (390)
T 3gd7_A 240 LYH 242 (390)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=268.73 Aligned_cols=194 Identities=15% Similarity=0.090 Sum_probs=149.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.+|+++||++.|++.. ...+|+||||+|++|+++||+||||||||||+|+|+|+++ | +|+|.++|.+.
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 3699999999997631 1128999999999999999999999999999999999997 7 89999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------C-------CCccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------Q-------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~-------~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.++. .. ...+.+.++++.++. . .+.++.+||||||
T Consensus 91 ~~~~i~~v~Q~~~l-~~--~tv~enl~~~~-----~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 91 IRSIIGIVPQDTIL-FN--ETIKYNILYGK-----LD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHTTEEEECSSCCC-CS--EEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HhccEEEEcCCCcc-cc--cCHHHHHhccC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 2359999999653 32 59999987641 11 123344555554431 0 1345679999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999994 4444444433 25799999987654 444 8888889988875
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 242 ~ 242 (260)
T 2ghi_A 242 K 242 (260)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-33 Score=279.56 Aligned_cols=193 Identities=16% Similarity=0.117 Sum_probs=153.6
Q ss_pred CeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
.+|+++||+++|++ .. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~----~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKP----ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKL 412 (582)
T ss_pred CeEEEEEEEEEcCCCCcc----ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCH
Confidence 36999999999974 44 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CC----CccCCCCCcc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHG 212 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgG 212 (313)
++.++|++|++..+ . .|+.||+.++.. + ..+.+++.++++.++. +. .....+||||
T Consensus 413 ~~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLF-N--DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred HHHhcCeEEEcCCCccc-c--ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 24699999997543 2 599999987421 1 1234556666665542 11 2245699999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhH
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 280 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e 280 (313)
||||++||+|++.+++++++|||+..||.. +.+.+.++.+ .+|+||||++.+.. |++ |++++.|++++
T Consensus 485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999994 4444444432 25799999998765 554 89999999888
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 565 l~~ 567 (582)
T 3b5x_A 565 LLA 567 (582)
T ss_pred HHh
Confidence 754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-33 Score=276.85 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=153.7
Q ss_pred eEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
+|+++||++.|++ .. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 341 ~i~~~~v~~~y~~~~~~----~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVP----ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSSSSCC----SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCCCCCc----cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHH
Confidence 6999999999974 44 9999999999999999999999999999999999999 99999999996542
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccC
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGe 213 (313)
+.++|++|++..+ . .|+.||+.++.. + ..+.+++.++++.++. .......+|||||
T Consensus 414 ~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 414 SLRNQVALVSQNVHLF-N--DTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HHHHTEEEECSSCCCC-S--SBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HHHhhCeEEccCCcCC-C--CCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 3599999997543 2 599999987421 1 1234556666665542 1123456999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~ 281 (313)
|||++||+|++.+++++++|||+..||+. +.+.+.++.+ .+|+||||++.+.. |++ |++++.|+++++
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999994 4444444432 25799999998754 544 899999999888
Q ss_pred HHH
Q 021380 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
...
T Consensus 566 ~~~ 568 (582)
T 3b60_A 566 LAQ 568 (582)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-32 Score=251.79 Aligned_cols=183 Identities=10% Similarity=0.107 Sum_probs=131.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|+++||++.+ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++|+
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~v 104 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISFC 104 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEEE
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEEE
Confidence 369999999864 34 9999999999999999999999999999999999999 9999999987 38999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------c----CCCccCCCCCccCCCcchhhhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~LSgGekqRv~la~a 222 (313)
+|++.. +. .|+.+|+. .. .. ....+.+.++.++ . .....+.+||||||||++||++
T Consensus 105 ~Q~~~l-~~--~tv~enl~-~~---~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAra 173 (290)
T 2bbs_A 105 SQNSWI-MP--GTIKENII-GV---SY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 173 (290)
T ss_dssp CSSCCC-CS--SBHHHHHH-TT---CC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHH
T ss_pred eCCCcc-Cc--ccHHHHhh-Cc---cc----chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHH
Confidence 999643 32 49999986 21 11 1112222222222 1 1123457999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHh-hc------CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||....+.+.++ .. .+|++|||++.+.. |++ |+++..|++.++..
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 174 VYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999777777663 21 25799999988754 444 88888898888753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-33 Score=277.42 Aligned_cols=194 Identities=16% Similarity=0.136 Sum_probs=151.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFENT--DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 599999999995321 129999999999999999999999999999999999999 99999999998742
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgGekq 215 (313)
+.++|++|++..+ . .|++||+.++. + ....+.+.+.++..+ .+ ......+|||||||
T Consensus 416 r~~i~~v~Q~~~lf-~--~tv~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 416 RGHISAVPQETVLF-S--GTIKENLKWGR-----E-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp HHHEEEECSSCCCC-S--EEHHHHHTTTC-----S-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred HhheEEECCCCcCc-C--ccHHHHHhccC-----C-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 3599999997543 2 49999987642 1 122233333333322 11 13456699999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.+++++++|||+..||.+. .+.+.++.. .+|+||||++.+.. |++ |++++.|+++|+..
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999944 444444332 25799999998765 555 99999999999875
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 567 ~ 567 (587)
T 3qf4_A 567 H 567 (587)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-33 Score=278.55 Aligned_cols=192 Identities=14% Similarity=0.145 Sum_probs=150.4
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
-|+++||++.|++ .. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 354 ~i~~~~v~~~y~~~~~----~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKP----VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp CEEEEEEECCSSSSSC----SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHH
T ss_pred eEEEEEEEEECCCCCc----cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHH
Confidence 4999999999974 34 9999999999999999999999999999999999999 99999999997632
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCccCC
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgGek 214 (313)
+.++|++|++..+ + .|++||+.++. +. .+.+.+.+.++.++. +.+ ....+||||||
T Consensus 427 ~r~~i~~v~Q~~~lf-~--~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 427 LRSSIGIVLQDTILF-S--TTVKENLKYGN-----PG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHHEEEECTTCCCC-S--SBHHHHHHSSS-----TT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HHhceEEEeCCCccc-c--ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 3599999997543 2 59999987641 11 122233444433321 111 22358999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||+|++.+++++++|||+..||.. +.+.+.++.+ .+|+||||++.+.. |++ |++++.|+++++.
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999984 4444444433 25799999999876 555 9999999999886
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 578 ~~ 579 (598)
T 3qf4_B 578 QK 579 (598)
T ss_dssp HT
T ss_pred hC
Confidence 53
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-33 Score=276.42 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=151.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. .++|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 599999999997521 129999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgGekq 215 (313)
+.++|++|++..+ + .|++||+.++. +. ...+.+.+.++..+. + ......+|||||||
T Consensus 414 r~~i~~v~Q~~~l~-~--~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 414 RNQIGLVQQDNILF-S--DTVKENILLGR-----PT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp HHTEEEECSSCCCC-S--SBHHHHHGGGC-----SS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhheEEEeCCCccC-c--ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 3599999997543 2 49999997642 21 223444455444331 1 12344589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.+|+++++|||+..||++..+ .+.++.. .+|+||||++.+.. |++ |++++.|+++++..
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999994433 3433332 25799999998765 555 99999999998865
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 565 ~ 565 (578)
T 4a82_A 565 K 565 (578)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=251.48 Aligned_cols=213 Identities=20% Similarity=0.282 Sum_probs=165.8
Q ss_pred eEEEccceeEcccccccccccccccee-----------------------ecCCeEEEEECCCCCCHHHHHHHHHHHhcc
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~-----------------------i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~ 133 (313)
+|++++|++.|+ + ++++++|. +++|+++||+||||||||||+++|+|+++
T Consensus 43 ~i~~~~v~~~y~--p----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYL--P----LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHH--H----HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhh--h----HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 589999999996 2 56666654 89999999999999999999999999998
Q ss_pred cCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCcc
Q 021380 134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG 212 (313)
Q Consensus 134 ~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG 212 (313)
|+.|. ..+++++||+++++ . |+.+|+.+. ..++.+...+.+.+.++|+.++... +.+++.||||
T Consensus 116 --~~~G~---------~~v~~v~qd~~~~~--~-t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G 180 (312)
T 3aez_A 116 --RWDHH---------PRVDLVTTDGFLYP--N-AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL 180 (312)
T ss_dssp --TSTTC---------CCEEEEEGGGGBCC--H-HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred --ccCCC---------CeEEEEecCccCCc--c-cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence 87653 34899999976543 3 777776542 1235555667778888999888433 4678899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhc----------------cC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TG 276 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~----------------~G 276 (313)
|+||+++|++++.++++|++|++++++|... ..+.++++..|||+||.+.+.+|.+.|.+. .|
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g 259 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAA 259 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTT
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccC
Confidence 9999999999999999999999999987311 245667788899999999888777655442 13
Q ss_pred ChhHH----HHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 277 KPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 277 ~~~e~----~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
-+.+. +..+|...++|+.+ ||.|++..||+||++..
T Consensus 260 ~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 260 FSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 33333 33557778889987 99999999999998754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-31 Score=261.38 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=151.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
..+|+++|+++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|
T Consensus 355 ~~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-----~~i~~ 421 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-----LTVAY 421 (607)
T ss_dssp CEEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-----CCEEE
T ss_pred ceEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-----eEEEE
Confidence 4589999999999763 6899999999999999999999999999999999999 999999872 35899
Q ss_pred EeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+.... ..+|+.+++... ...+ ...+.+.++++.++. ..++++.+|||||||||+||++++.++++|+
T Consensus 422 v~Q~~~~~--~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLl 494 (607)
T 3bk7_A 422 KPQYIKAE--YEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 494 (607)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred EecCccCC--CCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99996432 347998876553 1111 123456778888874 4567788999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH------hhhhccCChhHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi------gr~v~~G~~~e~~~~ 284 (313)
+|+|+..||.. +++.|.++.. .+|+||||++++.. |++ |+++..|++.++...
T Consensus 495 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999994 4555555432 25799999999876 544 444567888887653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-30 Score=257.76 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=150.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++|+++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|
T Consensus 285 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~-----~~i~~ 351 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEWD-----LTVAY 351 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCCC-----CCEEE
T ss_pred CeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEC-----ceEEE
Confidence 4589999999999763 6899999999999999999999999999999999999 999999872 35899
Q ss_pred EeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+.... ..+|+.+++... ...+ . ..+.+.++++.++. ..++++.+|||||||||+||++++.++++|+
T Consensus 352 v~Q~~~~~--~~~tv~~~~~~~~~~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl 424 (538)
T 1yqt_A 352 KPQYIKAD--YEGTVYELLSKIDASKL--N---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL 424 (538)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHHHHHH--T---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred EecCCcCC--CCCcHHHHHHhhhccCC--C---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99996432 347887776543 1111 1 23456777787773 4567888999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH------hhhhccCChhHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi------gr~v~~G~~~e~~~~ 284 (313)
+|+|+..||.. +++.|.++.. .+|+||||++++.. |++ |+++..|.+.++...
T Consensus 425 LDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999999994 4555555432 25799999999886 544 455567888887653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-31 Score=283.88 Aligned_cols=197 Identities=15% Similarity=0.098 Sum_probs=159.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||+++|+++. ..++|+||||+|++|+.+||+|+||||||||+++|.|+++ |++|+|.+||.+..
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997542 2239999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
+.+++|+|+++.+. -|+++|+.++. .+...+.+.+.+.++..+ .+.+..+ ..|||||||
T Consensus 1152 R~~i~~V~Qdp~LF~---gTIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFD---CSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp HTTEEEECSSCCCCS---EEHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred HhheEEECCCCEeeC---ccHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 46999999986544 49999987542 123345566666666554 2334444 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHH----hhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS----MFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~----l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-||.+.-+.+.+ ++.. +|+|+|.++.+.. ||+ ||+++.|++++++.
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999855444444 3332 5799999998877 666 99999999999886
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-30 Score=250.79 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=140.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++++++|+++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++. .++|
T Consensus 267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----~i~~ 334 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQ----ILSY 334 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCC----CEEE
T ss_pred cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCe----eeEe
Confidence 4579999999999874 5788899999999999999999999999999999999 99999998653 4899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
++|+.+.. ..+|+.+|+..... .. .......+.++++.++ ...++++.+|||||||||+||++++.++++|++
T Consensus 335 ~~q~~~~~--~~~tv~~~l~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlL 409 (538)
T 3ozx_A 335 KPQRIFPN--YDGTVQQYLENASK--DA-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVL 409 (538)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHCS--ST-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred echhcccc--cCCCHHHHHHHhhh--hc-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99985432 24789988776311 11 1112344567777777 346778889999999999999999999999999
Q ss_pred cCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 233 d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|+|+..||. .+++.|.++.+ .+|+||||++++..
T Consensus 410 DEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999 44555555542 24799999999876
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-30 Score=275.17 Aligned_cols=194 Identities=14% Similarity=0.129 Sum_probs=155.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||+++|++.. +.++|+||||+|++|+.+||+||+|||||||+++|.|+++ |++|+|.++|.+..
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 499999999997542 2349999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
+.++|++|+++.+. -|++||+.++. + ..+.+++.++++..+ .+.+..+ ..|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~---~TI~eNI~~g~-----~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFN---CTIEENISLGK-----E-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCS---EEHHHHHHTTC-----T-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred hhcccccCCcceeeC---CchhHHHhhhc-----c-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 35999999976543 59999998752 2 223455555554432 3344433 389999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||+..+++++++|+++.-||.+ +.+.|.++.+ .+|+|||.+..+.. +++ |++++.|+.+|+..
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999984 3444444433 25899999998876 555 99999999988754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-30 Score=273.84 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=151.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||+++|++.. ..++|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 499999999997532 1239999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHH---------hhcCC----CccCCCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~----~~~~~~LSgGekq 215 (313)
+.++|++|++..+. .|++||+.++.. ....+.+.+.++. +..+. ......|||||||
T Consensus 463 r~~i~~v~Q~~~l~~---~ti~eNi~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFA---TTIAENIRYGRE------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCS---SCHHHHHHHHCS------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH
T ss_pred HhheEEEcCCCccCC---ccHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH
Confidence 35999999975433 499999987632 1122333333332 22222 2345589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhh----c--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~----~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.++++|++|+++.-||.+....+.+.+ . .+|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999985444443332 2 25799999999866 555 99999999988764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-30 Score=275.04 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=152.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||++.|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 599999999997542 2238999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~LSgGekq 215 (313)
++.++|++|++.. +. .|+++|+.++... .....+.+.+.++..+ .+.+ .....|||||||
T Consensus 1106 r~~i~~v~Q~~~l-~~--~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Q 1178 (1284)
T 3g5u_A 1106 RAQLGIVSQEPIL-FD--CSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178 (1284)
T ss_dssp TTSCEEEESSCCC-CS--SBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHH
T ss_pred HhceEEECCCCcc-cc--ccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHH
Confidence 2469999999754 32 6999998764211 1123334444444332 1112 234589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHH----Hhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~----~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.++++|++|||+..||....+.+. +... .+|+||||++++.. |++ |++++.|+++++..
T Consensus 1179 rv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999994444443 3333 35799999998755 555 99999999998865
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1259 ~ 1259 (1284)
T 3g5u_A 1259 Q 1259 (1284)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-30 Score=264.83 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=140.4
Q ss_pred CCeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeE
Q 021380 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i 152 (313)
.++|+++||++.|++ +. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++.. .+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~----iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP----QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC----SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CE
T ss_pred CceEEEEeeEEEeCCCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ce
Confidence 458999999999975 34 8999999999999999999999999999999999999 999999998642 37
Q ss_pred EEEeccCCCCC--c------------------------------------------------------------------
Q 021380 153 TVLPMDGFHLY--L------------------------------------------------------------------ 164 (313)
Q Consensus 153 ~~v~q~~~~~~--~------------------------------------------------------------------ 164 (313)
+|++|+.+... .
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 88888632100 0
Q ss_pred ----------------ccCCcccCHHHH-------------------HHhcCCCCCccHHHHHHHHHHhhcC----CCcc
Q 021380 165 ----------------SQLDAMEDPKEA-------------------HARRGAPWTFNPLLLLNCLKNLRNQ----GSVY 205 (313)
Q Consensus 165 ----------------~~ltv~e~l~~~-------------------~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~ 205 (313)
..+++.+|+.+. ....+........++.++|+.++.. .+.+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~ 898 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR 898 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCC
Confidence 001111121000 0001112223345678888888853 2557
Q ss_pred CCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 206 ~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+.+||||||||++||++++.++++|++|+|+..||......+.+.+. .+|+||||++++.. |++ |+++.
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999999965555555443 35799999999865 443 66665
Q ss_pred cC
Q 021380 275 TG 276 (313)
Q Consensus 275 ~G 276 (313)
.|
T Consensus 979 ~G 980 (986)
T 2iw3_A 979 SG 980 (986)
T ss_dssp --
T ss_pred eC
Confidence 55
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-28 Score=242.38 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=144.6
Q ss_pred ccceeEccccccccccccccceeecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~G-----eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
.++++.|++.. .+++++||++.+| |++||+||||||||||+|+|+|+++ |++|+.. ....++|+
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~-----~~~~i~~~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDI-----PKLNVSMK 418 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCC-----CSCCEEEE
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCc-----cCCcEEEe
Confidence 67888887532 2789999999999 7899999999999999999999999 9999742 12358999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
+|+....+ ..|+.+++.. ...+. ......+.++++.++ ...++++.+|||||||||+||++++.++++|++|
T Consensus 419 ~q~~~~~~--~~tv~e~~~~--~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQLFFK--KIRGQ--FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHHHHHH--HCSST--TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHHHHHH--Hhhcc--cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99854333 3577776532 11211 123445677888887 3457788899999999999999999999999999
Q ss_pred CcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH------hhhhccCChhHHHHH
Q 021380 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi------gr~v~~G~~~e~~~~ 284 (313)
+|+..||. .+++.|.++.. .+|+||||++++.. |++ |+++..|.|.++...
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999998 45555555532 25799999999887 554 677889999998765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-28 Score=244.12 Aligned_cols=176 Identities=16% Similarity=0.057 Sum_probs=132.3
Q ss_pred CCeEEE--------ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee-----
Q 021380 75 IPVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----- 141 (313)
Q Consensus 75 ~~~l~v--------~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i----- 141 (313)
+.+|++ +||++.|++.. .+|+++| +|++|+++||+||||||||||+|+|+|+++ |++|++
T Consensus 81 ~~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~ 153 (607)
T 3bk7_A 81 FNAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWD 153 (607)
T ss_dssp SCCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHH
T ss_pred cceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccc
Confidence 346888 99999998641 2899999 999999999999999999999999999999 999996
Q ss_pred ----eeCCCCC----------CCeEEEEeccCCCCCcc-cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCc
Q 021380 142 ----FDSQVKP----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSV 204 (313)
Q Consensus 142 ----~~~~~~~----------~~~i~~v~q~~~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~ 204 (313)
.++|... ...+++++|.....+.. ..|+.+++.. .. ..+++.++++.++. ..++
T Consensus 154 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~-----~~~~~~~~L~~lgL~~~~~~ 224 (607)
T 3bk7_A 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VD-----EVGKFEEVVKELELENVLDR 224 (607)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TC-----CSSCHHHHHHHTTCTTGGGS
T ss_pred hhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----hH-----HHHHHHHHHHHcCCCchhCC
Confidence 3455431 12367777763221110 1255555432 11 12346678888884 3467
Q ss_pred cCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+|||||||||+||++++.++++|++|||+..||.. +++.|+++.+ .+|+||||++++..
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 78899999999999999999999999999999999994 4555555533 25799999998765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-28 Score=238.05 Aligned_cols=173 Identities=17% Similarity=0.066 Sum_probs=127.8
Q ss_pred EEE-ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee---------eeCCCC
Q 021380 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQVK 147 (313)
Q Consensus 78 l~v-~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i---------~~~~~~ 147 (313)
.++ +||+|.|++.. .+|+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .++|..
T Consensus 21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 344 69999998641 2799999 999999999999999999999999999999 999996 345543
Q ss_pred C----------CCeEEEEeccCCCCCcc-cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCC
Q 021380 148 P----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 148 ~----------~~~i~~v~q~~~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGek 214 (313)
. ...+++++|.....+.. ..++.+++.. .. ..+++.++++.++. ..++++.+||||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 1 12467788763222210 0144444321 11 12346778888884 35677889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
|||+||++++.++++|++|||+..||.. +++.|.++.+ .+|+||||++++..
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999994 5555555533 25799999998865
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-26 Score=204.05 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=130.8
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+|+|+||++++|+++||+||||||||||+++|+|++. .+.++ ...+.++|++|+.++ . .+++.+++.+
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~v~~d~~~-~--~l~~~~~~~~ 81 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVILSQDRFY-K--VLTAEQKAKA 81 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEEEEGGGGB-C--CCCHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEEEeCCcCc-c--ccCHhHhhhh
Confidence 9999999999999999999999999999999999873 33332 123458899999532 2 3687777665
Q ss_pred HHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC
Q 021380 176 AHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (313)
Q Consensus 176 ~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~ 253 (313)
....+.. +...+.+.+.+.|+.+......+++.||+||+||+.+ .+++.+++++++|++.++.++ .+.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~~~ 156 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMFHL 156 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTCSE
T ss_pred hccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhcCe
Confidence 4332222 2234556667777777666778889999999999988 467777889999998877774 34555665
Q ss_pred eE-EEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEecc
Q 021380 254 KW-FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 254 ~i-~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 310 (313)
.| +++|+. ....|.+.|.+..|...+.+..+|...+.+..+ |+.|.+..||+|+++
T Consensus 157 ~i~v~th~~-~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 157 RLFVDTDSD-VRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp EEEEECCHH-HHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred EEEEECCHH-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 55 566653 333355555456676666555556655555555 999999999999943
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-27 Score=242.25 Aligned_cols=184 Identities=14% Similarity=0.032 Sum_probs=139.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--CCCeEEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--PPDVATV 154 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--~~~~i~~ 154 (313)
.|...|+++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|- +| .|.+ ....++|
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG---------~i--~g~~~~~~~~~~~ 499 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG---------QV--DGFPTQEECRTVY 499 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHT---------CS--TTCCCTTTSCEEE
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC---------Cc--CCCccccceeEEE
Confidence 466679999999877 99999999999999999999999999999999961 11 1111 1123677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+.... ...+|+.+++.+ ...+ . .+++.++++.++.. .++++.+||||||||++||++++.++++|+
T Consensus 500 v~q~~~~~-~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 500 VEHDIDGT-HSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp TTCCCCCC-CTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred Eccccccc-ccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 77763222 235788888764 1111 1 56678889998853 467788999999999999999999999999
Q ss_pred EcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhHHHH
Q 021380 232 VDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 232 ~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e~~~ 283 (313)
+|+|+..||....+.+.+++. .+|+||||++++.. |++ |+++ ..|++.++..
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999954444444332 25799999999876 444 7776 5788887754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-26 Score=230.86 Aligned_cols=185 Identities=17% Similarity=0.122 Sum_probs=111.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHH---------------------HHHHHHhcccCCCCc-------eeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA-------SSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLl---------------------k~L~Gll~~~~p~~G-------~i~~~~~~ 147 (313)
+|+||||+|++|+++||+||||||||||+ +++.|+.. |+.| .|.+++..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 89999999999999999999999999998 88888888 8854 44444432
Q ss_pred C----CCeEEEEeccCCC-----------------CCcccCCcccCHHHHHHhc--CCCCCccH------HHHHHHHHHh
Q 021380 148 P----PDVATVLPMDGFH-----------------LYLSQLDAMEDPKEAHARR--GAPWTFNP------LLLLNCLKNL 198 (313)
Q Consensus 148 ~----~~~i~~v~q~~~~-----------------~~~~~ltv~e~l~~~~~~~--~~~~~~~~------~~~~~~l~~l 198 (313)
. ...+++++|.... .....+|+.+|+.+..... ........ .....+++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1 1223444443111 1112478999987643211 10000000 1112346666
Q ss_pred hcC---CCccCCCCCccCCCcchhhhhcccCcc--EEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 199 RNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 199 ~~~---~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+.. .++++.+|||||||||+||+|++.+++ +|++|||+..||+. +++.|.++.+ .+|+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 643 467888999999999999999999888 99999999999993 4444444432 25799999997655
Q ss_pred --HHH----------hhhhccCChhHHHH
Q 021380 267 --RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 267 --rvi----------gr~v~~G~~~e~~~ 283 (313)
|++ |++++.|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 432 67778888887653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-26 Score=225.27 Aligned_cols=175 Identities=15% Similarity=0.062 Sum_probs=119.0
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-----------eCCCCCC-
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP- 149 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-----------~~~~~~~- 149 (313)
|++++|+... ..|++++ .+.+|+++||+||||||||||+|+|+|+++ |++|+|. +.|....
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 6788887543 1566666 689999999999999999999999999999 9999983 3332210
Q ss_pred -------Ce--EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcch
Q 021380 150 -------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~--i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~ 218 (313)
.. ..+.+|.....+ ..+..+................+++.++++.++. ..++++.+|||||||||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHH---HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhh---hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHH
Confidence 00 111222111000 0111111111111001112244678888999884 456788899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||++++.++++|++|+|+..||.. +.+.|+++... +|+||||++++..
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999984 45555555443 5799999999876
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-27 Score=231.84 Aligned_cols=187 Identities=12% Similarity=-0.010 Sum_probs=137.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-e-eeeCCCCCCCeE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQVKPPDVA 152 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~-i~~~~~~~~~~i 152 (313)
.+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |.+++. ..+.+
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~~~~i 181 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-PQQPI 181 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-TTSCS
T ss_pred cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-ccCCe
Confidence 45788999998885 5899999999999999999999999999999999 9999 9 999884 45668
Q ss_pred EEEeccCCCC-CcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhh--cccCcc
Q 021380 153 TVLPMDGFHL-YLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHK 228 (313)
Q Consensus 153 ~~v~q~~~~~-~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~a--l~~~a~ 228 (313)
+|++|+...+ ....+|+.+|+ ++... .+. ...+++.++++.++......+.+|||||+||+++|++ ++.+++
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~ 257 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ 257 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc
Confidence 8899985221 12246888887 43221 111 1112233455556543323366999999999999999 999999
Q ss_pred E----EEEcC-cccccChhhHHHHHHhh----cCeEEEEcChH------HHHH---H-----HH-----hhhhccCChhH
Q 021380 229 V----VIVDG-NYLFLDGGVWKDVSSMF----DEKWFIEVDLD------TAMQ---R-----VL-----KRHISTGKPPD 280 (313)
Q Consensus 229 ~----li~d~-~~llLDE~~~~~l~~l~----~~~i~vtHd~~------~~~~---r-----vi-----gr~v~~G~~~e 280 (313)
+ |++|+ ++..||.. .+.|.++. ..+++|+||.+ ++.. | ++ |+++ .|++.+
T Consensus 258 i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~ 335 (460)
T 2npi_A 258 VRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVY 335 (460)
T ss_dssp HHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred cCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence 9 99999 99999985 44444443 24689999987 4433 5 44 6677 777766
Q ss_pred H
Q 021380 281 V 281 (313)
Q Consensus 281 ~ 281 (313)
+
T Consensus 336 ~ 336 (460)
T 2npi_A 336 K 336 (460)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-24 Score=185.23 Aligned_cols=182 Identities=32% Similarity=0.458 Sum_probs=139.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
.++|+++||+||||||||||+++|+|+++ |+ | ..++++++|++++.. +..+++... ...+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g----------~~~g~v~~d~~~~~~---~~~~~~~~~-~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G----------LPAEVVPMDGFHLDN---RLLEPRGLL-PRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T----------CCEEEEESGGGBCCH---HHHGGGTCG-GGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C----------CceEEEecCCCcCCH---HHHHHhccc-ccCCCC
Confidence 57899999999999999999999999997 54 3 136888998765432 112221100 112344
Q ss_pred CCccHHHHHHHHHHhhcCCCc------cCCCCCccCCCcchhhhhcccCc-cEEEEcCcccccChhhHHHHHHhhcCeEE
Q 021380 184 WTFNPLLLLNCLKNLRNQGSV------YAPSFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEKWF 256 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~------~~~~LSgGekqRv~la~al~~~a-~~li~d~~~llLDE~~~~~l~~l~~~~i~ 256 (313)
..++...+.+++..+....+. ....+|+|++|++++ + ++++.|++++++||..+..+.+.++..++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~-------~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP-------ECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT-------TCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC-------CCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 455656666666666543221 223578999999998 7 99999999999999888777888888999
Q ss_pred EEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEecc
Q 021380 257 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 310 (313)
Q Consensus 257 vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~ 310 (313)
++++.+...+|++.|....|.+.+.+.+++...+.++.+|+.|.+..||+||++
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 999999988888888888888878777778877888888999999999999975
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-24 Score=209.33 Aligned_cols=169 Identities=14% Similarity=-0.045 Sum_probs=116.5
Q ss_pred ccceeEccccccccccccccceee-cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee-----------eeCCCCC
Q 021380 81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKP 148 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i-~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i-----------~~~~~~~ 148 (313)
++.+.+||... ++-..|.+ ++|+++||+||||||||||+|+|+|+++ |++|+| .+.|...
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 45788898653 44344444 5999999999999999999999999999 999998 4555432
Q ss_pred C----------CeEEEEeccCCCCCc-ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCC
Q 021380 149 P----------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~----------~~i~~v~q~~~~~~~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekq 215 (313)
. ..+....|.....+. ...++.+++. ... ..+++.++++.++ ...++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT----KID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHH----HHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhh----cch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 1 112223332111110 0012322211 111 1123566777777 3457788899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
||+||+|++.++++|++|+|+..||.. +.+.|+++.+ .+|+||||++++..
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 999999999999999999999999993 4555555533 25799999998876
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-24 Score=217.37 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhc---CeE
Q 021380 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~---~~i 255 (313)
.+..+.+..++.. .++++.+|||||||||+||++++.++ ++|++|||+..||+ .+++.|.++.+ .+|
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3455667777743 35677899999999999999998765 69999999999998 44555555543 257
Q ss_pred EEEcChHHHHH--HHH----------hhhhccCChhHHH
Q 021380 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVA 282 (313)
Q Consensus 256 ~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~ 282 (313)
+||||++++.. |++ |++++.|+++++.
T Consensus 601 ~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999998754 432 7888999998874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-24 Score=185.10 Aligned_cols=145 Identities=17% Similarity=0.065 Sum_probs=92.9
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC-----CCCCCeEEEEeccC
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-----VKPPDVATVLPMDG 159 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~-----~~~~~~i~~v~q~~ 159 (313)
|+|+++. +|++| ++|++++|+||||||||||+++|+|+ + |++|+|.... ....+.++|++|+.
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 5677766 89985 89999999999999999999999999 8 9999985310 11234578888874
Q ss_pred CCCCcccCCcccCH-HH----HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 160 FHLYLSQLDAMEDP-KE----AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 160 ~~~~~~~ltv~e~l-~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
.+|+ .+ ....... .....+.++++. +. |||||++||++++.++++|++|+
T Consensus 76 ----------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 ----------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp --------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred ----------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeC
Confidence 1222 11 1111111 122345555554 21 99999999999999999999999
Q ss_pred cccccChhhHHHHHHhhc-CeEEEEcChHHHHH
Q 021380 235 NYLFLDGGVWKDVSSMFD-EKWFIEVDLDTAMQ 266 (313)
Q Consensus 235 ~~llLDE~~~~~l~~l~~-~~i~vtHd~~~~~~ 266 (313)
|+...-+.+++.|.++.. ..|++|||++++..
T Consensus 131 Pts~~~~~l~~~l~~l~~g~tiivtHd~~~~~~ 163 (208)
T 3b85_A 131 AQNTTPAQMKMFLTRLGFGSKMVVTGDITQVDL 163 (208)
T ss_dssp GGGCCHHHHHHHHTTBCTTCEEEEEEC------
T ss_pred CccccHHHHHHHHHHhcCCCEEEEECCHHHHhC
Confidence 888822255556655511 23449999998765
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=168.72 Aligned_cols=178 Identities=24% Similarity=0.335 Sum_probs=133.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
.++|+++||+||||||||||+++|+|++. | .++|++||.++.....+++.++..+ .++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--------------~i~~v~~d~~~~~~~~~~~~~~~~~---~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--------------RVALLPMDHYYKDLGHLPLEERLRV---NYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--------------GEEEEEGGGCBCCCTTSCHHHHHHS---CTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--------------CeEEEecCccccCcccccHHHhcCC---CCCCh
Confidence 47899999999999999999999999986 4 3789999976554334565554332 12334
Q ss_pred CCccHHHHHHHHHHhhcCC--CccCCCCCccCC----CcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEE
Q 021380 184 WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 257 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGek----qRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~v 257 (313)
...+.+.+.+.++.++... ..+...+|+|++ ||+++ +++++.+|+++++||. +..+++.++++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~-------~~~li~~~~ll~~de~----~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRP-------APVVILEGILVLYPKE----LRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECC-------CSEEEEESTTTTSSHH----HHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCC-------CcEEEEeehhhccCHH----HHHhcCEEEEE
Confidence 4456677788888877443 334558999974 57777 8999999999999974 44567888999
Q ss_pred EcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 258 EVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 258 tHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
+.+.+....|.+.|.. ..|.+...+.+++.....+.++ |+.|.+..||+|+++..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 9998887777776654 4677777667777766667766 89999999999998764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-22 Score=207.54 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccCh----hhHHHHHHhhcC---eE
Q 021380 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE----~~~~~l~~l~~~---~i 255 (313)
.++.++|+.++.. .++++.+|||||+|||+||++++.+ ++++++|+|+..||. .+++.|.++.+. +|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4567788888853 3677889999999999999999985 699999999999998 344444444432 57
Q ss_pred EEEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+||||++++.. |++ |++++.|+++++..
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999833 443 47788888887653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-22 Score=208.96 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccCh----hhHHHHHHhhcC---eEE
Q 021380 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWF 256 (313)
Q Consensus 190 ~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~ 256 (313)
+..++|+.++.. .++++.+|||||+|||+||++++.+ ++++++|+|+..||. .+++.|.++.+. +|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 446778888853 4677889999999999999999976 499999999999999 344555554432 579
Q ss_pred EEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 257 IEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 257 vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
||||++++.. |++ |++++.|+++++..
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 9999998643 433 57888888887753
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=201.12 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhc---CeE
Q 021380 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~---~~i 255 (313)
.+..++|+.++.. ..+++.+|||||+|||+||++|+.++ ++|++|+|+..||. .+++.|.++.+ .+|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 4566778888753 46778899999999999999998754 79999999999998 34445554443 257
Q ss_pred EEEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+||||++++.. |++ |++++.|+++++..
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999998765 554 68999999999864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-23 Score=192.11 Aligned_cols=157 Identities=10% Similarity=0.042 Sum_probs=112.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------~~v~ 159 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------SFAN 159 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE----------CGGG
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE----------EEec
Confidence 488999999998 45 999999999999999999999999999999999998 47763 4567
Q ss_pred ccCCCCCcccCCccc-CHHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 157 MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 q~~~~~~~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
|++..+. .|+.+ |+.+.. ... ..+.+.++. +....+ ...|||||||| |++++.++++|+
T Consensus 160 q~~~lf~---~ti~~~ni~~~~-------~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl--- 220 (305)
T 2v9p_A 160 HKSHFWL---ASLADTRAALVD-------DAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV--- 220 (305)
T ss_dssp TTSGGGG---GGGTTCSCEEEE-------EEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE---
T ss_pred Ccccccc---ccHHHHhhccCc-------ccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---
Confidence 7754332 36665 765521 011 234455555 332222 66999999999 899999999998
Q ss_pred cccccChhhHHHHHHhhcCeEEEEcChHHHHH--HHH---hhhhccCChhHH
Q 021380 235 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ--RVL---KRHISTGKPPDV 281 (313)
Q Consensus 235 ~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~--rvi---gr~v~~G~~~e~ 281 (313)
+..||....+.+..+ ||++..+.. +++ |++++.|++.++
T Consensus 221 -Ts~LD~~~~~~i~~l-------tH~~~~~~~aD~ivl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 -TSNIDVQAEDRYLYL-------HSRVQTFRFEQPCTDESGEQPFNITDADW 264 (305)
T ss_dssp -EESSCSTTCGGGGGG-------TTTEEEEECCCCCCCC---CCCCCCHHHH
T ss_pred -ECCCCHHHHHHHHHH-------hCCHHHHHhCCEEEEeCCEEEEeCCHHHH
Confidence 888998544444332 565543322 223 888899998888
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-22 Score=181.11 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=142.2
Q ss_pred eEEEccceeEccccccccccccccceee-------------------cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i-------------------~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~ 137 (313)
+|+++||++.|+ + ++++++|.+ .+|+++||+||||||||||+++|+|++.. +|+
T Consensus 37 ~i~~~~v~~~y~--~----~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL--P----LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHH--H----HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHH--H----HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 588999999994 3 889999988 99999999999999999999999999841 157
Q ss_pred CceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCC-ccCCCCCccCCCc
Q 021380 138 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDP 216 (313)
Q Consensus 138 ~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~LSgGekqR 216 (313)
+|+|.+ +.+|++.... .....+.+. ..++.+...+.......+..+..... ...+.++....+|
T Consensus 110 ~G~i~v-----------i~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~ 174 (308)
T 1sq5_A 110 HRRVEL-----------ITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDV 174 (308)
T ss_dssp CCCEEE-----------EEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEE
T ss_pred CCeEEE-----------EecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCc
Confidence 787655 3344332110 000000000 01122223333334444444433333 4566777777788
Q ss_pred chhhhhcccCccEEEEcCcccccChh------hHHHHHHhhcCeEEEEcChHHHHHHHHhhhhc----------------
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS---------------- 274 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~------~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~---------------- 274 (313)
+..+......+.++++|+++++.++. -...+.++++..|+|+.|.+...+|++.|...
T Consensus 175 ~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~ 254 (308)
T 1sq5_A 175 IPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNY 254 (308)
T ss_dssp CTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHH
T ss_pred ccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcc
Confidence 76554555668899999999998720 00135667888899999999888877765431
Q ss_pred cCChhHH----HHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 275 TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 275 ~G~~~e~----~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.|-+.+. +..+|...++|+.+ ||.|.+..||+||++..
T Consensus 255 ~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 255 AKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSA 297 (308)
T ss_dssp HTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECG
T ss_pred cCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCC
Confidence 2444442 44556677788886 99999999999998763
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-21 Score=179.42 Aligned_cols=211 Identities=23% Similarity=0.310 Sum_probs=157.2
Q ss_pred ccceeEccccccccccccccceeecCCe------EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Ge------iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
+.+++.|++.. .|.+++..+.++. ++||+||||||||||+++|.+++.. +|+.| .+++
T Consensus 64 rll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~-----------~v~~ 127 (321)
T 3tqc_A 64 RLLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHP-----------NVEV 127 (321)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCC-----------CEEE
T ss_pred HHHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCC-----------eEEE
Confidence 45566777776 8888998888776 9999999999999999999999961 12333 2677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
+.+|+++.....+. ++ .....++.|..++...+.+.+..+..+. ....+.||.+..+|+.........++++|+|
T Consensus 128 i~~D~f~~~~~~l~--~~--~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvE 203 (321)
T 3tqc_A 128 ITTDGFLYSNAKLE--KQ--GLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILE 203 (321)
T ss_dssp EEGGGGBCCHHHHH--HT--TCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEE
T ss_pred Eeecccccchhhhh--hH--HHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEE
Confidence 89998765432111 00 0012356677788888888888888766 6788899999999987655666789999999
Q ss_pred CcccccChh------hHHHHHHhhcCeEEEEcChHHHHHHHHhhhhc-c---------------CChhH----HHHHHHH
Q 021380 234 GNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-T---------------GKPPD----VAKWRIE 287 (313)
Q Consensus 234 ~~~llLDE~------~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~-~---------------G~~~e----~~~~~~~ 287 (313)
+.+++.|+. -+..+.++++..|+|+.+.+....|++.|... . +-+.+ .+...|.
T Consensus 204 Gi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~ 283 (321)
T 3tqc_A 204 GLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWN 283 (321)
T ss_dssp CTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999862 12236678888999999999998887755432 1 22222 3445677
Q ss_pred hcCCchHH-HHHhhcCCCCEEeccC
Q 021380 288 YNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 288 ~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
..+.|+.+ ||+|++.+||+|++.-
T Consensus 284 ~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 284 EINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp HTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred hccccCHHHhCccCccCceEEEecC
Confidence 78889987 9999999999999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-21 Score=161.03 Aligned_cols=140 Identities=11% Similarity=0.008 Sum_probs=84.9
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
||||++++|++++|+||||||||||+|++.+-.. ..++.. ..++++|+....... -++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---~~~~d~---------~~g~~~~~~~~~~~~-~~~~~~~----- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---VISSDF---------CRGLMSDDENDQTVT-GAAFDVL----- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG---EEEHHH---------HHHHHCSSTTCGGGH-HHHHHHH-----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe---EEccHH---------HHHHhcCcccchhhH-HHHHHHH-----
Confidence 6899999999999999999999999996432111 000000 012233332110000 0000000
Q ss_pred hcCCCCCccHHHHHHHHHHhhcC-CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh---------------
Q 021380 179 RRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--------------- 242 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~--------------- 242 (313)
...... ....+.. ........|+|||||++||++++.+++++++|+|+..||+.
T Consensus 63 ---------~~~~~~-~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~ 132 (171)
T 4gp7_A 63 ---------HYIVSK-RLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIR 132 (171)
T ss_dssp ---------HHHHHH-HHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHH
T ss_pred ---------HHHHHH-HHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHH
Confidence 001111 1112211 11233456999999999999999999999999999999986
Q ss_pred -hHHHHHHhhc-------CeEEEEcChHHHHH
Q 021380 243 -VWKDVSSMFD-------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 243 -~~~~l~~l~~-------~~i~vtHd~~~~~~ 266 (313)
....+.+++. .+|++|||++++..
T Consensus 133 ~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 133 KHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 4455555432 25799999999865
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-20 Score=175.66 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=47.0
Q ss_pred CCccCCCcchhhhhcccCc--cEEEEcCcccccChh----hHHHHHHhh--cCeEEEEcChHHHH
Q 021380 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGG----VWKDVSSMF--DEKWFIEVDLDTAM 265 (313)
Q Consensus 209 LSgGekqRv~la~al~~~a--~~li~d~~~llLDE~----~~~~l~~l~--~~~i~vtHd~~~~~ 265 (313)
||||||||++||++++.++ .+|++|+|+..||.. +.+.|.++. ..+|+||||++++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~ 360 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA 360 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh
Confidence 6999999999999999999 999999999999994 444444443 23579999997754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=167.52 Aligned_cols=215 Identities=30% Similarity=0.494 Sum_probs=167.2
Q ss_pred cccccceeecCCeE--EEEECCCCCCHHHHHHHHHHHhcccC--------------------------------------
Q 021380 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (313)
Q Consensus 96 iL~~is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~~~~-------------------------------------- 135 (313)
+++.+++.+++|++ ++|+|++||||||+.++|++.+...+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 78889999999998 99999999999999999999874211
Q ss_pred -CCCce-------------------------------------eeeCCC----CCC-------CeEEEEeccCCCCCccc
Q 021380 136 -PQKAS-------------------------------------SFDSQV----KPP-------DVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 136 -p~~G~-------------------------------------i~~~~~----~~~-------~~i~~v~q~~~~~~~~~ 166 (313)
...|+ |.+... ... ..+.++++|+|+++...
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 00111 001000 000 24778999999887766
Q ss_pred CCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-----------------------------CCccCCCCCccCCCcc
Q 021380 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 167 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~LSgGekqRv 217 (313)
++-+++-......+|.|..++...+.+.++.+... ....+|.|+.....++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 65554443345678899999998888887777533 3446778898888888
Q ss_pred hhhhhcccCccEEEEcCcccccChhhHHHHHHhhc-----CeEEEEcChHHHHHHHHhhhhccCC--hhHHHHHHHHhcC
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYND 290 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~-----~~i~vtHd~~~~~~rvigr~v~~G~--~~e~~~~~~~~~~ 290 (313)
.-...+...++++++|+.++++++..|..+.++++ ..|||+-|.++..+|++.|.+..|. ..+....++..++
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d 330 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSND 330 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCT
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcC
Confidence 77666666689999999999999777888889998 6789999999999999999988887 7777777788999
Q ss_pred CchHHHHHhhcCCCCEEecc
Q 021380 291 RPNAELIMKSKKNADLVIKS 310 (313)
Q Consensus 291 ~~~~~~i~~~~~~aD~i~~~ 310 (313)
.|+.+||.|++..||+|+..
T Consensus 331 ~pN~~~I~~~~~~ad~i~~~ 350 (359)
T 2ga8_A 331 LLNGRDIDNHLIKVDNIVHI 350 (359)
T ss_dssp TTSSHHHHHTBCCCTTEEEE
T ss_pred chhhHhHhhcCCCCCEEEEe
Confidence 99999999999999999864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-20 Score=166.62 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=88.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
.++|+||||||||||+|+|+|++. |++|+|.++|.+. .+.+++++|+..... .+|+.+++.++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~--~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM--KLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CC--EEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcC--CceEEechhhhhhccc--
Confidence 589999999999999999999999 9999999988642 356899999854333 4899999887643322
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc--CeEEEEcCh
Q 021380 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~--~~i~vtHd~ 261 (313)
....+.+.+.+. ....+....+|||||+||+++|++++ .++++||+.-.+|+.-.+.+..+.+ .+|+|.|..
T Consensus 77 -~~~~~~i~~~~~--~~~~~~~~~~LS~G~~qrv~iaRal~---~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~ 150 (270)
T 3sop_A 77 -ENCWEPIEKYIN--EQYEKFLKEEVNIARKKRIPDTRVHC---CLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKA 150 (270)
T ss_dssp -TTCSHHHHHHHH--HHHHHHHHHHSCTTCCSSCCCCSCCE---EEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred -HHHHHHHHHHHH--HHHHhhhHHhcCcccchhhhhheeee---eeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence 122233333332 11223345589999999999999874 5899999988999854555554443 356777776
Q ss_pred HHH
Q 021380 262 DTA 264 (313)
Q Consensus 262 ~~~ 264 (313)
+.+
T Consensus 151 D~l 153 (270)
T 3sop_A 151 DTM 153 (270)
T ss_dssp GGS
T ss_pred ccC
Confidence 643
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-21 Score=184.21 Aligned_cols=138 Identities=9% Similarity=0.033 Sum_probs=102.9
Q ss_pred cccccceeecCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 96 iL~~is~~i~~Ge--------------------iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
+|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+..+. +++
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t~~-~~v 113 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVTME-RHP 113 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC----CC-CEE
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeeccee-EEe
Confidence 8999999999999 999999999999999999999999 9999999988654333 678
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCcc--CCCcchhhhhccc-------
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL------- 225 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG--ekqRv~la~al~~------- 225 (313)
+|++. + +.+++.|++.+.. + ...+.++++.++... +..+ .||+| |+||+.++++++.
T Consensus 114 ~q~~~-~--~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 114 YKHPN-I--PNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp EECSS-C--TTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccc-c--CCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 88742 2 2478888875431 1 123567777777432 3333 39999 9999999999988
Q ss_pred ---CccEEEEcCcccccCh----hhHHHHHHh
Q 021380 226 ---QHKVVIVDGNYLFLDG----GVWKDVSSM 250 (313)
Q Consensus 226 ---~a~~li~d~~~llLDE----~~~~~l~~l 250 (313)
+++++++|+|+..||. .+++.+.++
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 6666677777777776 445555554
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-20 Score=165.12 Aligned_cols=154 Identities=13% Similarity=0.022 Sum_probs=88.6
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------CCeEEEEeccCCCCCccc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------~~~i~~v~q~~~~~~~~~ 166 (313)
-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+. .+.++|++|+...+. .
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~--~ 82 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFE--D 82 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHH--H
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHH--H
Confidence 689999999999999999999999999999999987 6 88888 4321 234677888743221 1
Q ss_pred CC-cccCHH---HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh-
Q 021380 167 LD-AMEDPK---EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 lt-v~e~l~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE- 241 (313)
++ +.+++. +....++. ....+.++++..... .....|||||+||++++ ....+++++.++++++|||
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTH--IKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSS--CCSCEEEEEECSCHHHHHHH
T ss_pred hhhccchhhhhhcccccCCC----cHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHH
Confidence 22 111111 11111221 123455555543311 11147899999999884 1223677888888888888
Q ss_pred ----------hhHHHHHHhh----------cCeEEEEcChHHHHH
Q 021380 242 ----------GVWKDVSSMF----------DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ----------~~~~~l~~l~----------~~~i~vtHd~~~~~~ 266 (313)
.+.+.+..+. -..|+++||++++..
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 2233332221 125799999998876
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=157.84 Aligned_cols=192 Identities=18% Similarity=0.201 Sum_probs=126.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH------
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH------ 177 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~------ 177 (313)
-.++.++||+|++|||||||++.|.+++. +. |. ..+.+.+++||++++. .+..+|+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~---~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLT---HEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCC---HHHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCC---hHHHHHHhccccccchh
Confidence 45789999999999999999999999997 42 20 0122555699987654 35566665541
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcC------CC----ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhh----
Q 021380 178 ARRGAPWTFNPLLLLNCLKNLRNQ------GS----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV---- 243 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~------~~----~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~---- 243 (313)
..++.+...+...+.+.+..+..+ .. .+-..+||||+||+.++.+...+++++++|+.++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~ 173 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIE 173 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTT
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccchhhh
Confidence 223467788888888888888755 21 2234789999999998733322899999999999999742
Q ss_pred ------------HHH-------HHHhhcCe---EEEEc-ChHHHHHHHHhh--h-h-cc--CChhHHHHHHHHhcCCchH
Q 021380 244 ------------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-I-ST--GKPPDVAKWRIEYNDRPNA 294 (313)
Q Consensus 244 ------------~~~-------l~~l~~~~---i~vtH-d~~~~~~rvigr--~-v-~~--G~~~e~~~~~~~~~~~~~~ 294 (313)
.+. +.++++.. ||+.- +.+.+.++.+.| . + .. |...+.+.+ +...++|++
T Consensus 174 ~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~-~~~~~~p~y 252 (290)
T 1odf_A 174 NNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHA-FVDRYMPSY 252 (290)
T ss_dssp TCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHH-HHHTTHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHH-HHHHhcchH
Confidence 111 23334555 99988 444555434443 2 2 23 766666554 444566665
Q ss_pred H-HHHh-------hcCCCCEEeccC
Q 021380 295 E-LIMK-------SKKNADLVIKSI 311 (313)
Q Consensus 295 ~-~i~~-------~~~~aD~i~~~~ 311 (313)
+ |+.| .+ +||+|++..
T Consensus 253 ~~~~~~~~~~~~~~~-~adlvl~~~ 276 (290)
T 1odf_A 253 KLYLNDFVRSESLGS-IATLTLGID 276 (290)
T ss_dssp HHHHHHHHHHTCSSS-SEEEEEEEC
T ss_pred HHHhHHHHHhccCCC-CCCEEEEEC
Confidence 5 5544 44 799998643
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-21 Score=183.98 Aligned_cols=174 Identities=10% Similarity=-0.023 Sum_probs=117.9
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------- 147 (313)
++++++++++.|+ +.. +|+++ |.|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|..
T Consensus 130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 4688999999997 455 99999 9999999999999999999999999999999 999999998872
Q ss_pred ---------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcch
Q 021380 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 148 ---------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~ 218 (313)
..+.++|++|++... ...+++.+|+.+....+.... . .+.... ..+..||+|| ||++
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~-~~~~~v~~~~~~~ae~~~~~~-~----------~v~~~l-d~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSP-LLRMQGAAYATRIAEDFRDRG-Q----------HVLLIM-DSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCH-HHHHHHHHHHHHHHHHHHTTT-C----------EEEEEE-ECHHHHHHHH-HHHH
T ss_pred HHhhccccccCceEEEEECCCCCH-HHHHHHHHHHHHHHHHHHhCC-C----------CHHHHH-HhHHHHHHHH-HHHH
Confidence 124589999964322 234677777766544322100 0 000000 1245789999 9999
Q ss_pred hhhhcccCccEEEEcCcccccChhhH----HHHHHhhc-----C-------eEEEEcChHHHHH-HHH----hhhhccCC
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD-----E-------KWFIEVDLDTAMQ-RVL----KRHISTGK 277 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~-----~-------~i~vtHd~~~~~~-rvi----gr~v~~G~ 277 (313)
+| +.++.+ +..+|.... +.+.++.. . ++++|||++.... +++ |+++..|+
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCC
Confidence 95 233333 788998444 44444433 2 3478899973222 333 66666555
Q ss_pred hhH
Q 021380 278 PPD 280 (313)
Q Consensus 278 ~~e 280 (313)
+.+
T Consensus 339 ~~~ 341 (438)
T 2dpy_A 339 LAE 341 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-19 Score=166.28 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=109.5
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC-----------
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----------- 150 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~----------- 150 (313)
.+.+.++... .+.++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+
T Consensus 79 ~l~~~l~~~~----~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 79 SVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp HHHHHHCC------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred HHHHHhCCcc----cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHH
Confidence 3444554433 4568999999999999999999999999999999999 999999998876421
Q ss_pred ---eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhccc
Q 021380 151 ---VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 151 ---~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.++|++|+....+ +.+++.+++.+.... +. + ..+++.++.. .+.++.+|| +||++++++++.
T Consensus 152 ~~~~i~~v~q~~~~~~-~~~~v~e~l~~~~~~-~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~ 218 (302)
T 3b9q_A 152 ERTGCEIVVAEGDKAK-AATVLSKAVKRGKEE-GY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG 218 (302)
T ss_dssp HHHTCEEECCC--CCC-HHHHHHHHHHHHHHT-TC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTT
T ss_pred HhcCceEEEecCCccC-HHHHHHHHHHHHHHc-CC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhcc
Confidence 3789999854022 246888888765321 11 1 0122333321 233455788 899999999999
Q ss_pred Ccc--EEEEcCcccccChh-hHHHHHHhh-cCeEEEEcC
Q 021380 226 QHK--VVIVDGNYLFLDGG-VWKDVSSMF-DEKWFIEVD 260 (313)
Q Consensus 226 ~a~--~li~d~~~llLDE~-~~~~l~~l~-~~~i~vtHd 260 (313)
.++ +|++| ++..+|.. ....+.+.. -.++++||.
T Consensus 219 ~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 219 APNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKL 256 (302)
T ss_dssp CCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECC
T ss_pred CCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCC
Confidence 999 99999 99999972 222222221 235899993
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-18 Score=158.92 Aligned_cols=130 Identities=9% Similarity=0.009 Sum_probs=94.0
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccC
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~ 159 (313)
++++++ | .. +++++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|....
T Consensus 151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~---------- 210 (330)
T 2pt7_A 151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEI---------- 210 (330)
T ss_dssp TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCC----------
T ss_pred cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeecc----------
Confidence 556666 6 33 8999999999999999999999999999999999999 99999998775310
Q ss_pred CCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCccccc
Q 021380 160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (313)
Q Consensus 160 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llL 239 (313)
.... ..+.+.+ .. .|||+||++|++++..+++++++|++..
T Consensus 211 -~~~~----~~~~i~~------~~--------------------------ggg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 211 -VFKH----HKNYTQL------FF--------------------------GGNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp -CCSS----CSSEEEE------EC--------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred -cccc----chhEEEE------Ee--------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 0000 0000000 00 0899999999888888888888888765
Q ss_pred ChhhHHHHHHhhcC---eEEEEcChHHHHH--HHH
Q 021380 240 DGGVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 240 DE~~~~~l~~l~~~---~i~vtHd~~~~~~--rvi 269 (313)
.++++.+..+... +++++|+.+.... |++
T Consensus 252 -~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 252 -SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp -THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 3566666665432 4799999884433 544
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-20 Score=159.89 Aligned_cols=72 Identities=22% Similarity=0.177 Sum_probs=42.8
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC----CCCeEEEEeccCCCCCcccCCcc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~----~~~~i~~v~q~~~~~~~~~ltv~ 170 (313)
+++.| .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+.. ..+.++|++|+...+ +.+++.
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~--~~~~~~ 82 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRF--QQLIDQ 82 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHH--HHHHHT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHH--HHHHhc
Confidence 37777 7899999999999999999999999999985 333322221111 123478899885432 235666
Q ss_pred cCH
Q 021380 171 EDP 173 (313)
Q Consensus 171 e~l 173 (313)
+++
T Consensus 83 ~~l 85 (207)
T 1znw_A 83 GEL 85 (207)
T ss_dssp TCE
T ss_pred CCc
Confidence 654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-18 Score=147.74 Aligned_cols=131 Identities=12% Similarity=0.047 Sum_probs=87.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC--CCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~--~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~ 186 (313)
+++|+||||||||||+++|+|++.. .-.|...-.-. ...+.++|++|+. ++.+++. ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~~---~~~~~~~-- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKIF---SSKFFTS-- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------CCEEEEEET--------TCCEEEE---EETTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEhhhhccccccceeEEEeecC--------cHHHHHH---HhhcCCc--
Confidence 6899999999999999999999851 11232110000 1234578888873 2222220 0000000
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhh-----cccCccEEEEcC--cccccChhhHHHHHHhhcC----eE
Q 021380 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE----KW 255 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~a-----l~~~a~~li~d~--~~llLDE~~~~~l~~l~~~----~i 255 (313)
....++++..|||||+||+++|++ ++.+++++++|+ ++..+|+...+.+.++++. +|
T Consensus 67 ------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 67 ------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 012345667999999999999996 899999999999 9999999777777776542 46
Q ss_pred EEEc---ChHHHHH
Q 021380 256 FIEV---DLDTAMQ 266 (313)
Q Consensus 256 ~vtH---d~~~~~~ 266 (313)
+++| |.+.+..
T Consensus 135 ~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 135 ATIPIRDVHPLVKE 148 (178)
T ss_dssp EECCSSCCSHHHHH
T ss_pred EEEccCCCchHHHH
Confidence 7874 7777764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-18 Score=159.71 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=49.8
Q ss_pred ccCCCCCccCCCcchhhhhcc------cCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~------~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
+++.+|||||+||++||++++ .+++++++|+|+..||+. +++.|.++.+. +|+||||++.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~ 348 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS 348 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence 466799999999999999998 699999999999999994 44445554432 47999999874
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-19 Score=164.35 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=58.1
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
++++++++++.|+ +.. +|+++ |.|.+|+++||+||||||||||+++|+|+++ |+.|.|.+.|..
T Consensus 44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCC
T ss_pred CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEeccc
Confidence 4688999999997 545 99999 9999999999999999999999999999999 999988877653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-18 Score=159.90 Aligned_cols=146 Identities=9% Similarity=0.037 Sum_probs=105.1
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC--------------eEEEEeccCCCCC
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~--------------~i~~v~q~~~~~~ 163 (313)
.++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .++|++|+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 57899999999999999999999999999999999 999999998876421 3789999853122
Q ss_pred cccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc--EEEEcCccccc
Q 021380 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL 239 (313)
Q Consensus 164 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llL 239 (313)
+.+++.+++.+.... +. +. .+++.++.. .+..+.+|| +||++|+++++..+. +|++| ++..+
T Consensus 225 -p~~tv~e~l~~~~~~-~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 225 -AATVLSKAVKRGKEE-GY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp -HHHHHHHHHHHHHHT-TC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred -hhhhHHHHHHHHHhC-CC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 246888888765421 11 10 122333321 223455788 899999999999999 99999 89999
Q ss_pred Chh-hHHHHHHhh-cCeEEEEcC
Q 021380 240 DGG-VWKDVSSMF-DEKWFIEVD 260 (313)
Q Consensus 240 DE~-~~~~l~~l~-~~~i~vtHd 260 (313)
|.. ....+.+.. -.+|++||.
T Consensus 291 D~~~~~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 291 NMLPQAREFNEVVGITGLILTKL 313 (359)
T ss_dssp GGHHHHHHHHHHTCCCEEEEESC
T ss_pred CHHHHHHHHHHhcCCeEEEEecC
Confidence 972 222222222 236899994
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-17 Score=152.28 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=76.9
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCCceeeeCCCCC-----CCeEEE
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVATV 154 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl-l~~~~p~~G~i~~~~~~~-----~~~i~~ 154 (313)
.||++.|+++. ++++++|+| +|+|+||+|||||+++|.|. +. |++| +.++|.+. .+.+++
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~g-i~~~g~~~~~t~~~~~~~~ 67 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERV-ISGAAEKIERTVQIEASTV 67 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCC-cccCCcccCCcceEeeEEE
Confidence 47899999887 999999998 99999999999999999997 66 8888 66555332 134677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
++|..... ..++++|++.++..... . +....+...+....+.++.++|||||||+.++++++ ++++++
T Consensus 68 ~~q~~~~~--~~ltv~Dt~g~~~~~~~-~-----e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 68 EIEERGVK--LRLTVVDTPGYGDAINC-R-----DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EEC---CC--EEEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred EecCCCcc--cCcchhhhhhhhhhcCc-H-----HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 77764322 24788888776432210 0 111111122222223566789999999999955542 788888
Q ss_pred ccc-ccChhhHHHHHHhhcC----eEEEEcChH
Q 021380 235 NYL-FLDGGVWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 235 ~~l-lLDE~~~~~l~~l~~~----~i~vtHd~~ 262 (313)
|.. .||+.-.+.+..+... .|+.+||+.
T Consensus 136 Pt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred CcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 876 4898555666665443 247789974
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-17 Score=136.40 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=70.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCe---EEE
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---ATV 154 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~---i~~ 154 (313)
++.+++++.|++.. +++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.+.... ..+
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAGK 79 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETTE
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCCc
Confidence 44567899998776 999999999999999999999999999999999998 7899999988764211 125
Q ss_pred EeccCCCCCcccCCcccCHHH
Q 021380 155 LPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~ 175 (313)
++|+. .++ .+|+.+++.+
T Consensus 80 ~~q~~-~l~--~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHF-DLY--RLADPEELEF 97 (158)
T ss_dssp EEEEE-ECT--TCSCTTHHHH
T ss_pred ceecc-ccc--cCCcHHHHHH
Confidence 77764 333 4899888854
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-16 Score=146.06 Aligned_cols=61 Identities=11% Similarity=-0.062 Sum_probs=47.9
Q ss_pred CccCCCCCccCCCcchhhhhcc----cCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHH
Q 021380 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDT 263 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~ 263 (313)
+.++..||+|||||++||++++ .+++++++|+|+..||+. +++.+.++.. .+|++||+.+.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~ 284 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV 284 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 3456699999999999999986 578999999999999994 4444444432 25799999754
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-16 Score=167.71 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=101.4
Q ss_pred CeEEEcc-----ceeEc-cccccccccccccceeecC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee
Q 021380 76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 76 ~~l~v~~-----ls~~y-~~~~~~~~iL~~is~~i~~-------Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~ 142 (313)
++|+++| |++.| ++.. +++|++|++.+ |++++|+||||||||||||+| |++. +-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~----- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VM----- 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HH-----
T ss_pred ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HH-----
Confidence 4699999 99999 5555 99999999987 999999999999999999999 9986 31
Q ss_pred eCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhh
Q 021380 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 143 ~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++||||+.. .+++.+++.. ..+.. + .......++|++|++ ++++++
T Consensus 816 ------aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~-----d-----------~~~~~~stf~~em~~-~a~al~ 864 (1022)
T 2o8b_B 816 ------AQMGCYVPAEVC-----RLTPIDRVFT---RLGAS-----D-----------RIMSGESTFFVELSE-TASILM 864 (1022)
T ss_dssp ------HTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred ------hheeEEeccCcC-----CCCHHHHHHH---HcCCH-----H-----------HHhhchhhhHHHHHH-HHHHHH
Confidence 112348998742 3677776521 11110 0 001123456677664 889999
Q ss_pred cccCccEEEEcCcccccCh-----hhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG-----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE-----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
++.++.++++|++...+|. ..+..+..+.+. +||+|||.+++..
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 9999999999999999997 245556555432 5799999998865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-16 Score=138.03 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=87.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCCCCCCCeEEEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~~~~~~~i~~v 155 (313)
++++++|++. . +|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+. .|+
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~~~ 67 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----EYV 67 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----CSC
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----eee
Confidence 4567888753 3 899999 89999999999999999999999999998 87 99998876542 223
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
+++...+ +.+ ..++.. ... -|++|++++..+++++++|++
T Consensus 68 ~~~~~~~------v~q------------------------~~~gl~----~~~------l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 68 FKHKKSI------VNQ------------------------REVGED----TKS------FADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp CCCSSSE------EEE------------------------EEBTTT----BSC------HHHHHHHHHHHCCSEEEESCC
T ss_pred cCCccee------eeH------------------------HHhCCC----HHH------HHHHHHHHHhhCCCEEEeCCC
Confidence 3221100 000 011110 011 178999999999999999999
Q ss_pred ccccChhhHHHHHHhhcC---eEEEEcChHHH
Q 021380 236 YLFLDGGVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 236 ~llLDE~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
. |++....+.+.... +++++|+.+..
T Consensus 108 ~---D~~~~~~~l~~~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 108 R---DLETVETALRAAETGHLVFGTLHTNTAI 136 (261)
T ss_dssp C---SHHHHHHHHHHHHTTCEEEEEECCSSHH
T ss_pred C---CHHHHHHHHHHHccCCEEEEEeCcchHH
Confidence 8 87554443333322 46899998743
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-16 Score=136.15 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=95.2
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCceeeeCCCCCC----CeEEEEeccCCCCCcccCCc----cc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDA----ME 171 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p--~~G~i~~~~~~~~----~~i~~v~q~~~~~~~~~ltv----~e 171 (313)
-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+.. +.++|+||+...+. .+++ .+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~--~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK--EMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH--HHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcccccCceEEECCHHHHH--HHHhcCHHHH
Confidence 3578999999999999999999999999997 6 5788877665432 23677887643221 2344 44
Q ss_pred CHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh
Q 021380 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~ 251 (313)
++.+....++. ..+.+.++++ ..+++++| +|......+.+.+
T Consensus 86 ~~~~~~~~yg~----~~~~v~~~l~-----------------------------~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 86 HAEVFGNYYGT----SREAIEQVLA-----------------------------TGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEEETTEEEEE----EHHHHHHHHT-----------------------------TTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHHhccCCC----CHHHHHHHHh-----------------------------cCCeEEEE-----ECHHHHHHHHHHc
Confidence 44332222221 1222222222 14778888 8997777777776
Q ss_pred cC---eEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 252 DE---KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~---~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
.. +++++||++++..|+.+|- .++++++. .++.... .+ .+.....|++|.|.+
T Consensus 128 ~~~~tI~i~th~~~~l~~Rl~~rG--~~~~e~i~-~rl~~a~---~e--~~~~~~~d~~i~Nd~ 183 (219)
T 1s96_A 128 PHARSIFILPPSKIELDRRLRGRG--QDSEEVIA-KRMAQAV---AE--MSHYAEYDYLIVNDD 183 (219)
T ss_dssp TTCEEEEEECSSHHHHHHHHHTTS--CSCHHHHH-HHHHHHH---HH--HTTGGGSSEEEECSS
T ss_pred cCCEEEEEECCCHHHHHHHHHHcC--CCCHHHHH-HHHHHHH---HH--HhhccCCCEEEECcC
Confidence 53 4588999999887765331 34444443 3333211 11 122345688887643
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-16 Score=157.24 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=63.3
Q ss_pred CeEEEccceeEccccccccccccccce-eecCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCCceeeeCCCCCC---
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~-~i~~Geiv~IiGpNGsGKSTLlk~--L~Gll~~~~p~~G~i~~~~~~~~--- 149 (313)
.+++.+++.+..++.. +|++|+| .|++|++++|+||||||||||+++ ++|+++ |++|.|++++.+..
T Consensus 11 ~~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~~~ 83 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQDI 83 (525)
T ss_dssp ---CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHHHH
T ss_pred CCccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHH
Confidence 3577788877776666 9999999 999999999999999999999999 789998 89999999887631
Q ss_pred ----CeEEEEeccC
Q 021380 150 ----DVATVLPMDG 159 (313)
Q Consensus 150 ----~~i~~v~q~~ 159 (313)
+.++|++|+.
T Consensus 84 ~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 84 IKNARSFGWDLAKL 97 (525)
T ss_dssp HHHHGGGTCCHHHH
T ss_pred HHHHHHcCCChHHh
Confidence 3467777763
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-15 Score=141.94 Aligned_cols=161 Identities=12% Similarity=0.003 Sum_probs=92.4
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc--eeeeCCCCC--CCe
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQVKP--PDV 151 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G--~i~~~~~~~--~~~ 151 (313)
.+|+++||++.|++.. +++++||+| +|+|+||||||||+++|+|... +..| .+.+..... ...
T Consensus 10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEEE
T ss_pred CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeeee
Confidence 4699999999998877 999999998 9999999999999999999875 5444 222221111 123
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc---
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK--- 228 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~--- 228 (313)
+++++|+.... ..+++++++.+...... ......+.+.+.. .++.+++||++|+++++.+++
T Consensus 77 i~~v~q~~~~~--~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~~----------~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 77 SKVLIKEGGVQ--LLLTIVDTPGFGDAVDN---SNCWQPVIDYIDS----------KFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp EECC------C--EEEEEEECC--------------CHHHHHHHHH----------HHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred EEEEEecCCcc--cceeeeechhhhhhccc---hhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCCeeE
Confidence 66777764322 24789999877543211 1111222222221 344567889999999999999
Q ss_pred EEEEcCcc-cccChhhHHHHHHhhcC--eEEEEcChHHH
Q 021380 229 VVIVDGNY-LFLDGGVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 229 ~li~d~~~-llLDE~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+|++++|. ..+|+.-.+.+..+... +|+|.|-.|..
T Consensus 142 lL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCc
Confidence 89999998 68887444455554433 46777766543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-15 Score=150.25 Aligned_cols=153 Identities=8% Similarity=0.010 Sum_probs=86.1
Q ss_pred eEEEccceeEcccccccccccccc----------ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQ 145 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~i----------s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~ 145 (313)
+++++||++.|+.... ++|+.+ +|+++. +||+||||||||||+++|+|++. | ++|.|.++|
T Consensus 10 ~i~~~~l~~~~~~~~r--~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVR--PCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHH--HHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHH--HHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 5789999999975321 144433 366654 99999999999999999999987 8 799999887
Q ss_pred CC-----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCC
Q 021380 146 VK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG 214 (313)
Q Consensus 146 ~~-----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGek 214 (313)
.+ ....++|++|+....+ .+++.+++.+..... +... .+..+
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~i~~~~~~~------------------~~~~-------~~~s~ 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISD--ASEVEKEINKAQNAI------------------AGEG-------MGISH 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCC--HHHHHTTHHHHHHHH------------------HCSS-------SCCCS
T ss_pred EEEEEecCCccccceeEEeeecccccCCC--HHHHHHHHHHHHHHh------------------cCCc-------cccch
Confidence 54 1235788888854322 467888876543221 1000 12234
Q ss_pred CcchhhhhcccCccEEEEcCc------ccccChh----hHHHHHHhhcC-----eEEEEcChHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGN------YLFLDGG----VWKDVSSMFDE-----KWFIEVDLDTA 264 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~------~llLDE~----~~~~l~~l~~~-----~i~vtHd~~~~ 264 (313)
+++.++.+....+.++++|+| +..+|+. +++.+.++... .++++||.+.+
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 556666666667899999999 8899984 44455554322 24899998744
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-15 Score=151.54 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=84.1
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.+++|+||+ |++++|+||||||||||+|+|+|+... +..|.+... ....+++++|- + ..+++.+|+.
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa---~~~~i~~v~~i----~-~~~~~~d~l~ 633 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPA---EEAHLPLFDGI----Y-TRIGASDDLA 633 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCSEE----E-EECCC-----
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeeh---hccceeeHHHh----h-ccCCHHHHHH
Confidence 388999999 999999999999999999999998630 566765321 11224444331 1 1245555432
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc--ccCccEEEEcCc---ccccChh-----hH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG-----VW 244 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al--~~~a~~li~d~~---~llLDE~-----~~ 244 (313)
. .+|+|+++++.++.++ +.+++++++|++ +..+|.. ++
T Consensus 634 ~--------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~ 681 (765)
T 1ewq_A 634 G--------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVA 681 (765)
T ss_dssp ---------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred h--------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHH
Confidence 1 2577888888888887 889999999999 8888863 33
Q ss_pred HHHHHhhcCeEEEEcChHHH
Q 021380 245 KDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 245 ~~l~~l~~~~i~vtHd~~~~ 264 (313)
+.+.+.-..++++|||.++.
T Consensus 682 ~~L~~~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 682 EALHERRAYTLFATHYFELT 701 (765)
T ss_dssp HHHHHHTCEEEEECCCHHHH
T ss_pred HHHHhCCCEEEEEeCCHHHH
Confidence 33333112357999998875
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-16 Score=150.06 Aligned_cols=143 Identities=12% Similarity=0.017 Sum_probs=91.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~------ 150 (313)
.++++++.+.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ |++|.|.+.+.+...
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 577889999887766 88988 64 8999999999999999999999999998 999999876654210
Q ss_pred ------eEEEEe---------ccCCCCCcc----cCCcccCHHHHHHhcCCC-----CCccHHHHHHHHHHhhcCCCccC
Q 021380 151 ------VATVLP---------MDGFHLYLS----QLDAMEDPKEAHARRGAP-----WTFNPLLLLNCLKNLRNQGSVYA 206 (313)
Q Consensus 151 ------~i~~v~---------q~~~~~~~~----~ltv~e~l~~~~~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~ 206 (313)
.+++.+ |++...... ..|+.+++.... .+.. ...+...+...|..++......+
T Consensus 214 q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~--tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~ 291 (418)
T 1p9r_A 214 QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL--TGHLVMSTLHTNTAVGAVTRLRDMGIEPFLIS 291 (418)
T ss_dssp EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH--TTCEEEEEECCSSSHHHHHHHHHHTCCHHHHH
T ss_pred eEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH--hCCCcccccchhhHHHHHHHHHHcCCcHHHHH
Confidence 122222 443211000 124444444332 1210 11122233344566664333355
Q ss_pred CCCCccCCCcchhhhhcccCccEEEE
Q 021380 207 PSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
..|||||+|| |+++++.++++...
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 5899999999 76666666666543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=143.29 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=98.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
.+++++++..|++.. .+| +..+.+|++++|+|+||||||||++.++|+.. +. |+ +.+.+.+
T Consensus 257 ~~~~~~l~~g~~~ld---~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~-G~---------~vi~~~~ 317 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLD---EMC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---AN-KE---------RAILFAY 317 (525)
T ss_dssp CCCCCEECCSCHHHH---HHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TT-TC---------CEEEEES
T ss_pred ccccceeecChHHHH---HHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hC-CC---------CEEEEEE
Confidence 456677776664311 033 44899999999999999999999999999997 64 43 1134455
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
++.. ..+..+ ....+. +. .++ ...+ ...+.++..||+||+||+.+++++..+++++++|
T Consensus 318 ee~~------~~l~~~----~~~~g~----~~---~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 318 EESR------AQLLRN----AYSWGM----DF---EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp SSCH------HHHHHH----HHTTSC----CH---HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred eCCH------HHHHHH----HHHcCC----CH---HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 5521 011111 111221 11 122 2232 2345566799999999999999999999999999
Q ss_pred cccccChh-----hHHHHHHhhc----C---eEEEEcCh
Q 021380 235 NYLFLDGG-----VWKDVSSMFD----E---KWFIEVDL 261 (313)
Q Consensus 235 ~~llLDE~-----~~~~l~~l~~----~---~i~vtHd~ 261 (313)
++..||.. ..+.+.+++. . +++++||.
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 99999986 5555444332 2 46999998
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-14 Score=133.42 Aligned_cols=138 Identities=14% Similarity=-0.017 Sum_probs=86.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------------CeEEEEeccCCCCCcccCCccc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------------~~i~~v~q~~~~~~~~~ltv~e 171 (313)
+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+.. ..++|++|+.... +.+++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~--p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD--SAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC--HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC--HHHHHHH
Confidence 799999999999999999999999999 99999999887632 1378888885322 2467777
Q ss_pred CHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHH
Q 021380 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDV 247 (313)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l 247 (313)
++.+.... +.. . .+++..+.. +.....++...+||++++++++..+..+++ .||. ..++.+
T Consensus 176 ~v~~~~~~-~~d--~------~llDt~G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~ 240 (304)
T 1rj9_A 176 AVQAMKAR-GYD--L------LFVDTAGRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQA 240 (304)
T ss_dssp HHHHHHHH-TCS--E------EEECCCCCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHH
T ss_pred HHHHHHhC-CCC--E------EEecCCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHH
Confidence 77654321 100 0 001111111 111111222337899998888888873332 4554 344444
Q ss_pred HHhhc----CeEEEEcChHH
Q 021380 248 SSMFD----EKWFIEVDLDT 263 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~ 263 (313)
..+.+ .++++||+.+.
T Consensus 241 ~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 241 KKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHcCCcEEEEECCccc
Confidence 44432 35899998544
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-14 Score=131.90 Aligned_cols=152 Identities=11% Similarity=-0.056 Sum_probs=85.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-eeee-CCCCCC----CeEEEEeccCCCCCcccCCc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQVKPP----DVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~i~~-~~~~~~----~~i~~v~q~~~~~~~~~ltv 169 (313)
+|+++++.+++|++++|+||||||||||++.|+|.+. |++| .|.+ ++.... +++..+.+.. .++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~------~~~~ 94 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLAMLEESVEETAEDLIGLHNRV------RLRQ 94 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEEESSSCHHHHHHHHHHHHTTC------CGGG
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC------Chhh
Confidence 8999999999999999999999999999999999998 8777 5533 221110 0011011110 0111
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccC-CCcchhhhhcccCccEEEEcCccccc------Ch-
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV-GDPVEDDILVGLQHKVVIVDGNYLFL------DG- 241 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGe-kqRv~la~al~~~a~~li~d~~~llL------DE- 241 (313)
.+++.... . ........+.++++.........+..+|.++ +|++. ++++..+++++++|++..++ |.
T Consensus 95 ~~~l~~~~-~---~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 95 SDSLKREI-I---ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp CHHHHHHH-H---HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred ccccccCC-C---CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 11121110 0 0000111122222211111122234678777 66666 78888999999999999854 33
Q ss_pred ----hhHHHHHHhhc----CeEEEEcCh
Q 021380 242 ----GVWKDVSSMFD----EKWFIEVDL 261 (313)
Q Consensus 242 ----~~~~~l~~l~~----~~i~vtHd~ 261 (313)
.+.+.|.++.. .+|+++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 24444544433 256999995
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-15 Score=125.00 Aligned_cols=130 Identities=13% Similarity=0.037 Sum_probs=83.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
|++++|+||||||||||+++|+|++ +++| |.++|.. ..+.++|++|+.. . ......++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~----~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~~~~l~~~------- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL----KSSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--TRGPLSRV------- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH----HHTT-CCCEEEECCEEETTSSEEEEEEEETT--S--CEEEEEEC-------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc----ccCC-EEEcCEecchhHhhhceEEEEEEecc--c--ceehhhcc-------
Confidence 7899999999999999999999999 4568 8776632 2456788888731 1 11111111
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchh-hh---hcccCccEEEEcC--cccccChhhHHHHHHhhcC-
Q 021380 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-DI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE- 253 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~l-a~---al~~~a~~li~d~--~~llLDE~~~~~l~~l~~~- 253 (313)
....... ........+...+|+||++++.. .. |+..+++++++|+ ++-.+|+.+++.|.++++.
T Consensus 65 ~~~~~~~---------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 65 GLEPPPG---------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CCCCCSS---------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cccCCcc---------ccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 0000000 00001122334689999988843 33 4677888899888 7777888888888888753
Q ss_pred --eEE--EE--cCh
Q 021380 254 --KWF--IE--VDL 261 (313)
Q Consensus 254 --~i~--vt--Hd~ 261 (313)
+|+ ++ ||.
T Consensus 136 ~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 136 GTIILGTIPVPKGK 149 (189)
T ss_dssp SCCEEEECCCCCSS
T ss_pred CcEEEEEeecCCCC
Confidence 343 34 986
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-15 Score=151.61 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=82.2
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.+++|+||++++|++++|+||||||||||||+|+++.-. +..| .+++.... .+.+.+.+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g-------------~~vpa~~~-----~i~~~d~i- 719 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIG-------------SYVPAEEA-----TIGIVDGI- 719 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHT-------------CCBSSSEE-----EEECCSEE-
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcC-------------ccccchhh-----hhhHHHHH-
Confidence 388999999999999999999999999999999876530 1111 11111100 00000000
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hH-HHH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VW-KDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~-~~l 247 (313)
+..++ .........||+||+|++.++.+ +.++.++++|++...+|.. +. ..+
T Consensus 720 --------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il 778 (918)
T 3thx_B 720 --------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATL 778 (918)
T ss_dssp --------------------EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred --------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00111 11123346789999999999777 7789999999999999982 22 334
Q ss_pred HHhhc----CeEEEEcChHHHH
Q 021380 248 SSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~~~ 265 (313)
..+.+ .++|+|||++.+.
T Consensus 779 ~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 779 EYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHhcCCeEEEEeCcHHHHH
Confidence 44432 2579999988764
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-14 Score=119.74 Aligned_cols=179 Identities=15% Similarity=0.196 Sum_probs=88.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~ 182 (313)
...+|++++|+|+||||||||++.|+++++ +..|.|.+ +.+|.+......... .....+....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~-----------~~~d~~~~~~~~~~~-~~~~~~~~~~-- 80 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCV-----------FHMDDHIVERAKRYH-TGNEEWFEYY-- 80 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEE-----------EEGGGGCCCHHHHSS-SSSCHHHHHH--
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEE-----------eccCcccCCHHHHHh-cCCCCccCCC--
Confidence 467899999999999999999999999997 66665543 344433221100000 0000011110
Q ss_pred CCCccHHHHHHH-HHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 183 PWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 183 ~~~~~~~~~~~~-l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
+...+...+.+. +..+........+.+..-...+.. .........++++|+++++-. .+.++++.+|+++-+.
T Consensus 81 ~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~~~ 154 (201)
T 1rz3_A 81 YLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPR 154 (201)
T ss_dssp HTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC-
T ss_pred ccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeCCH
Confidence 123344444332 222222222222223222111111 111223467899999987643 2445677789999999
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHHhh--cCCCCEEeccC
Q 021380 262 DTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 311 (313)
Q Consensus 262 ~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~ 311 (313)
++..+|++.|. +.+..++...+.+.++ |+.+. +..||+||+|.
T Consensus 155 ~~~~~R~~~R~-------~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 155 EIRFARENDQV-------KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHHHhcCC-------HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 88887887665 2223334334445555 77665 68899999875
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-14 Score=120.85 Aligned_cols=164 Identities=10% Similarity=0.003 Sum_probs=80.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCceeeeCCCCC-C
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP-P 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll-----~~~~p~~G~i~~~~~~~-~ 149 (313)
.+|+++|+++.|+. . ++++ |.+.+|.+++|+|+||||||||++.|+|.. . |+.|.+...+... .
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~ 71 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA 71 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence 36899999999974 4 7887 999999999999999999999999999987 5 7888765421000 0
Q ss_pred CeEEEEeccCCCCCcccCCccc----CHHHHHHh-c---------C--CCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021380 150 DVATVLPMDGFHLYLSQLDAME----DPKEAHAR-R---------G--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e----~l~~~~~~-~---------~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
....++...++..........+ .+...... . + .+.......+..++...+.. ...++..+|
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 72 DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 0011121111100000000000 01111110 0 0 01111222344444444321 133556899
Q ss_pred ccCCCc-chhhhhcccCccEEEEcCcccccChhhHHHHHH
Q 021380 211 HGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 211 gGekqR-v~la~al~~~a~~li~d~~~llLDE~~~~~l~~ 249 (313)
+||+|| +..+++++..+..++.+.++..+|....+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHH
Confidence 999999 778777776666677788888888844444433
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-15 Score=129.01 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=37.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++++.++..+..... +|.+ -|++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~i~tG~~~LD~---~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 2 ATIGRISTGSKSLDK---LLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp CCCCEECCSCHHHHH---HTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcCCccCCCChhHHh---HhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445666666643210 3322 689999999999999999999999999876
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-14 Score=133.26 Aligned_cols=117 Identities=13% Similarity=-0.015 Sum_probs=72.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC-CC----CCCCeEEEEeccCCCCCcccCCcc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QV----KPPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~-~~----~~~~~i~~v~q~~~~~~~~~ltv~ 170 (313)
-++++++.+ +|++++|+||||||||||+++|+|++.. |++|+|.+. |. .....+++++|+...+. ..++.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d--tpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID--SPGVR 279 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEECTTSCEEEE--CHHHH
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEEECCCCEecC--cccHH
Confidence 356677654 7999999999999999999999998741 678999875 42 23446788888754322 24555
Q ss_pred cCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 171 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
++. .++.+.......+.++++.++. ..+.....|| ||+||++++.++
T Consensus 280 e~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 531 1111111112234455666663 3566777999 999999995543
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=119.79 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=46.9
Q ss_pred ccCCCCCccCCC------cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHH
Q 021380 204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDT 263 (313)
Q Consensus 204 ~~~~~LSgGekq------Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~ 263 (313)
+++..||||||| |+++|++++.++++|++|+|+..||+. +.+.|.++... +|++|||.+.
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 456799999999 567778888899999999999999994 44455554432 5799999654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.7e-14 Score=132.13 Aligned_cols=77 Identities=13% Similarity=-0.029 Sum_probs=56.3
Q ss_pred ccCC-CCCccCCCcchhhhhcc---------cCccEEEEcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHHHHH
Q 021380 204 VYAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQRVL 269 (313)
Q Consensus 204 ~~~~-~LSgGekqRv~la~al~---------~~a~~li~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~rvi 269 (313)
.++. .||+||+||++||++++ ..+.+|++|+++.-||+...+.+.+++ ...|++||+ +....+++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i~ 338 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALTL 338 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEEE
Confidence 3555 79999999999999999 899999999999999995444444433 334678885 33111333
Q ss_pred ----hhhhccCChhHH
Q 021380 270 ----KRHISTGKPPDV 281 (313)
Q Consensus 270 ----gr~v~~G~~~e~ 281 (313)
|+++..|++.++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 888888887664
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=121.91 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=76.0
Q ss_pred cccccce-------eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCCCCC----CCeEEEEeccCCCCC
Q 021380 96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKP----PDVATVLPMDGFHLY 163 (313)
Q Consensus 96 iL~~is~-------~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~~~~----~~~i~~v~q~~~~~~ 163 (313)
.|+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+.+. ....+++.|....
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~-- 179 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHILTIEDPIEFVHESKKCLVNQREVH-- 179 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCSSSEEEEEEBT--
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEEEEccCcHHhhhhccccceeeeeec--
Confidence 5667666 778899999999999999999999999998 76 45553322111 0001111111000
Q ss_pred cccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhh
Q 021380 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (313)
Q Consensus 164 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~ 243 (313)
. .. ++..+ +|++++..+++++++|++. |++.
T Consensus 180 ------------------~-~~-----------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 180 ------------------R-DT-----------------------LGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp ------------------T-TB-----------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ------------------c-cc-----------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 0 00 00000 8888888889999999987 7777
Q ss_pred HHHHHHhhcC---eEEEEcChHHHH
Q 021380 244 WKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 244 ~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
.+.+.++... +++++|+.+.+.
T Consensus 211 ~~~~~~~~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 211 IRLALTAAETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHHHHHHHTTCEEEEEESCSSHHH
T ss_pred HHHHHHHHhcCCEEEEEEccChHHH
Confidence 7776666543 468999998773
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-14 Score=145.44 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=77.0
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.+++|++|++.+|++++|+||||||||||+|+|++..-- +..| .+++..... +.+.+.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G-------------~~vpa~~~~-----~~~~d~-- 707 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG-------------CFVPCESAE-----VSIVDC-- 707 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT-------------CCBSEEEEE-----EECCSE--
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC-------------Ccccccccc-----chHHHH--
Confidence 378899999999999999999999999999999544310 1112 112211100 000000
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc--ccCccEEEEcCcccccCh----hh-HHHH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDG----GV-WKDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al--~~~a~~li~d~~~llLDE----~~-~~~l 247 (313)
++..++.. +.....+|+++.++..++.++ +.++.++++|++...+|. .+ +..+
T Consensus 708 -------------------i~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il 767 (934)
T 3thx_A 708 -------------------ILARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIS 767 (934)
T ss_dssp -------------------EEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHH
T ss_pred -------------------HHHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00011100 111234666666666666666 788999999999999998 22 3334
Q ss_pred HHhhc----CeEEEEcChHHHH
Q 021380 248 SSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~~~ 265 (313)
..+.+ .++|+|||.+...
T Consensus 768 ~~l~~~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 768 EYIATKIGAFCMFATHFHELTA 789 (934)
T ss_dssp HHHHHTTCCEEEEEESCGGGGG
T ss_pred HHHHhcCCCEEEEEcCcHHHHH
Confidence 44432 2579999987654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-12 Score=113.40 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=86.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--CCeEEEEeccCCCCCcccCCcccCHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
.+++|++++|+||||||||||++.|++.+. .|.+.+ |... ...+.|+..+.. . +.+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~-g~~~~~~~~v~~~~~e~~--------~-~~~~~r~~~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLL-EVGELPTGPVIYLPAEDP--------P-TAIHHRLHAL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTT-CCCCCCCCCEEEEESSSC--------H-HHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcC-CCccCCCccEEEEECCCC--------H-HHHHHHHHHH
Confidence 478999999999999999999999999774 365544 3222 223555554321 0 1110001111
Q ss_pred CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCccc--ccCh-------hhHHHHHH
Q 021380 181 GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDG-------GVWKDVSS 249 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l--lLDE-------~~~~~l~~ 249 (313)
+. ........++++.+.. ..+..+..||+|+.+++ ++++.+++++++|++.. .+|+ .++..|..
T Consensus 91 g~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 91 GA--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp HT--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred Hh--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 11 1223344556666652 34556779999997765 45667899999999998 6786 34444554
Q ss_pred hhc----CeEEEEcChHHH
Q 021380 250 MFD----EKWFIEVDLDTA 264 (313)
Q Consensus 250 l~~----~~i~vtHd~~~~ 264 (313)
+.+ .+|+++|+....
T Consensus 166 l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHCCEEEEEEEC----
T ss_pred HHHHcCCEEEEEecCCCcc
Confidence 432 257999998765
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-13 Score=115.75 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=61.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCCC------------CeEE----EEeccCCCCCcccCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP------------DVAT----VLPMDGFHLYLSQLD 168 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~~------------~~i~----~v~q~~~~~~~~~lt 168 (313)
++++|+|+||||||||+++|+|+++ |+ .|.|.+++.+.. +.++ +++|+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~------ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF------ 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE------
Confidence 5899999999999999999999998 87 899999876411 1233 455543211
Q ss_pred cccCHHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCC-CCCccCCCcchhhhhcccCccE
Q 021380 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAP-SFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 169 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~-~LSgGekqRv~la~al~~~a~~ 229 (313)
+.+ ........+.+++.. +. ..+..+. .|||||+||++||+++..++.+
T Consensus 74 i~~-----------~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 74 IRR-----------VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp EEE-----------CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred Eec-----------CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 000 000000134455555 43 3333332 5999999999997777665543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-13 Score=127.22 Aligned_cols=66 Identities=23% Similarity=0.222 Sum_probs=59.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
|.+|+++++++.|+... +|+++||++.+|++++|+|+||||||||+++|+|++. |++|+|.+.+.+
T Consensus 27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d 92 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVD 92 (337)
T ss_dssp HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEc
Confidence 44688999999998766 9999999999999999999999999999999999999 999999876543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-13 Score=124.60 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=59.1
Q ss_pred EEccceeE---ccccccccccc---------cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 79 EARCMDEV---YDALAQRLLPT---------SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 79 ~v~~ls~~---y~~~~~~~~iL---------~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+++++++. |++.. ..+| +++||.|++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~--~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFE--QELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHH--HHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred CcCccccccccccchh--HHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 56788877 75311 1144 99999999999999999999999999999999999 99999999874
Q ss_pred C------CCCeEEEEe-ccC
Q 021380 147 K------PPDVATVLP-MDG 159 (313)
Q Consensus 147 ~------~~~~i~~v~-q~~ 159 (313)
. ....+++++ |+.
T Consensus 212 ~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 212 PELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp SCCCCTTCSSEEEEECC---
T ss_pred cccCccccCCEEEEeecCcc
Confidence 3 234577777 653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=119.95 Aligned_cols=112 Identities=12% Similarity=-0.024 Sum_probs=74.3
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---CCCCCC--------CeEEEEeccCCCC--Cc-ccCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL--YL-SQLD 168 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---~~~~~~--------~~i~~v~q~~~~~--~~-~~lt 168 (313)
++..|++++|+||||||||||+|+|+ ++. |++|+|.+ +|.... ..++|++|++... .. +.+|
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt 236 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVK 236 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCC
Confidence 46689999999999999999999999 888 99999998 775421 1378999986322 11 3578
Q ss_pred cccCH--HHH----H--HhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 169 AMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 169 v~e~l--~~~----~--~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
+ +++ .+. . ...+. ........+.++++.++.. .+.++..|||..++++.+
T Consensus 237 ~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~ 298 (302)
T 2yv5_A 237 P-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKEL 298 (302)
T ss_dssp G-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHH
T ss_pred H-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8 777 333 1 12231 2233345678888888854 245666899877777777
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-13 Score=133.23 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=46.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
++++++|.+++|++++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCcc
Confidence 7889999999999999999999999999999999999 999999988754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=111.36 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.4
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5778899999999999999999999999997
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-13 Score=122.37 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=52.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC--------------eEEEEeccCCCCCcccCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~--------------~i~~v~q~~~~~~~~~lt 168 (313)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .+.+++|.... .+.++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~--~p~~~ 199 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA--DPAAV 199 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC--CHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC--CHHHH
Confidence 447899999999999999999999999999 999999987765321 14467766332 22356
Q ss_pred cccCHHHH
Q 021380 169 AMEDPKEA 176 (313)
Q Consensus 169 v~e~l~~~ 176 (313)
+++|+.+.
T Consensus 200 v~e~l~~~ 207 (328)
T 3e70_C 200 AYDAIQHA 207 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-13 Score=127.88 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=41.7
Q ss_pred cccccceeecC--CeEEEEECCCCCCHHHHHHHHHHHhcccCCCC----ceeeeC
Q 021380 96 PTSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASSFDS 144 (313)
Q Consensus 96 iL~~is~~i~~--Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~----G~i~~~ 144 (313)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++ |++ |++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHH
Confidence 45679999999 99999999999999999999999998 888 887663
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-12 Score=132.45 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=75.6
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+++|++|+ ++|++++|+||||||||||+|+|+|+... ...|...-. ....++++++- + ..+++.+++..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vpa---~~~~i~~~~~i----~-~~~~~~d~l~~ 665 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVPA---QKVEIGPIDRI----F-TRVGAADDLAS 665 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCCEE----E-EEEC-------
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccch---hcccceeHHHH----H-hhCCHHHHHHh
Confidence 89999999 99999999999999999999999998630 223321100 00112222221 1 12334443322
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----h-hHHHHHHh
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G-VWKDVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~-~~~~l~~l 250 (313)
. ...+|++|++ +..+...+.++.++++|++...+|. . .+..+..+
T Consensus 666 ~-----------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l 715 (800)
T 1wb9_A 666 G-----------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENL 715 (800)
T ss_dssp ---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHH
T ss_pred h-----------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHH
Confidence 1 1234445443 3333444678999999999888887 2 24455555
Q ss_pred hc----CeEEEEcChHHHH
Q 021380 251 FD----EKWFIEVDLDTAM 265 (313)
Q Consensus 251 ~~----~~i~vtHd~~~~~ 265 (313)
.+ .++++|||.+...
T Consensus 716 ~~~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 716 ANKIKALTLFATHYFELTQ 734 (800)
T ss_dssp HHTTCCEEEEECSCGGGGG
T ss_pred HhccCCeEEEEeCCHHHHH
Confidence 43 2579999987653
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-13 Score=114.22 Aligned_cols=158 Identities=9% Similarity=-0.079 Sum_probs=74.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
|++++|+||||||||||+++|++ +.+|.+.+++.... ..++++++... .....++.+++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999987 45677777653211 11233333321 1112344555444322110000
Q ss_pred -Cc--cHHHHHHHHHHhhcCCCccCCCC--CccCCCcchhhhhcccCccEEEEcCccc----ccChhh---HHHHHHhhc
Q 021380 185 -TF--NPLLLLNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYL----FLDGGV---WKDVSSMFD 252 (313)
Q Consensus 185 -~~--~~~~~~~~l~~l~~~~~~~~~~L--SgGekqRv~la~al~~~a~~li~d~~~l----lLDE~~---~~~l~~l~~ 252 (313)
.. +.-.....++ .+..+ |+|+++++.++. +..+..+++..+... .+|+.. ++.+..+..
T Consensus 74 ~~~ild~~~~~~~~~--------~~~~~~~s~g~~~~~~~i~-L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~~ 144 (189)
T 2bdt_A 74 NDVVLDYIAFPDEAE--------ALAQTVQAKVDDVEIRFII-LWTNREELLRRDALRKKDEQMGERCLELVEEFESKGI 144 (189)
T ss_dssp CEEEEESCCCHHHHH--------HHHHHHHHHCSSEEEEEEE-EECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTTC
T ss_pred CcEEEeeccCHHHHH--------HHHHHHHhcccCCCeEEEE-EeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcCC
Confidence 00 0000000000 11123 889999987744 111222232222222 344422 445555432
Q ss_pred ---CeEEEEcC-hHHHHH---HHH--hhhhccCChhHH
Q 021380 253 ---EKWFIEVD-LDTAMQ---RVL--KRHISTGKPPDV 281 (313)
Q Consensus 253 ---~~i~vtHd-~~~~~~---rvi--gr~v~~G~~~e~ 281 (313)
.+|.+||. ++.+.+ +++ |+++..|+++-+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 23567887 665554 666 888888876554
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.3e-14 Score=129.24 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=84.5
Q ss_pred eEEEccceeEccccccccccccccceeecCC-------eEEEEECCCCCCHHHHHHHHHHHh----cccCCCCceeeeCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI----NKIWPQKASSFDSQ 145 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~G-------eiv~IiGpNGsGKSTLlk~L~Gll----~~~~p~~G~i~~~~ 145 (313)
+++.+++++.||... +++++++.+..| +.++|+||||+|||||+++|+|.+ . +++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTTCCSH
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechHhcCH
Confidence 466788999998776 899999999876 899999999999999999999999 5 6778776543
Q ss_pred CC--------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC----CCccHHHHHHHHHHhh-cCCCccCCCCCcc
Q 021380 146 VK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----WTFNPLLLLNCLKNLR-NQGSVYAPSFDHG 212 (313)
Q Consensus 146 ~~--------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~l~-~~~~~~~~~LSgG 212 (313)
.+ ....+.++++... +. -++.+++......++.. .......+...+..+. ......+..||+|
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~-l~---~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHR-LN---KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGG-CC---HHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHccCCCEEEEcchhh-cC---HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH
Confidence 21 1235778887643 22 14555554333332211 0111122333334444 2234566799999
Q ss_pred CCCcchh
Q 021380 213 VGDPVED 219 (313)
Q Consensus 213 ekqRv~l 219 (313)
++||+.+
T Consensus 167 l~sR~~l 173 (334)
T 1in4_A 167 LRSRFGI 173 (334)
T ss_dssp HHTTCSE
T ss_pred HHHhcCc
Confidence 9999976
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-12 Score=124.59 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=82.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC--CCCCCCeE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QVKPPDVA 152 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~--~~~~~~~i 152 (313)
.|++++ ++.|++. .|+++||+|++|++ +||+||||||||||+++|+|+.- .|..... .....+.+
T Consensus 16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEEE
T ss_pred eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEeeE
Confidence 467777 8999753 28999999999999 99999999999999999999841 1111100 00112358
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcC-CCCC----ccHHHHHHHHHHh-hcC------CCccCC-------CCCccC
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWT----FNPLLLLNCLKNL-RNQ------GSVYAP-------SFDHGV 213 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~----~~~~~~~~~l~~l-~~~------~~~~~~-------~LSgGe 213 (313)
+|++|+....+ .+|+.+++.++..... .... +....+..+|... +.. .+..+. ..+.|-
T Consensus 85 ~~v~Q~~~l~~--~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 85 TYDLQESNVRL--KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEC--CEE--EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEeecCcccc--ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 89999854322 4789998765321000 0000 0012223333332 211 111110 011111
Q ss_pred CC-cchhhhhcccCccEEEEcCcccccCh
Q 021380 214 GD-PVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 214 kq-Rv~la~al~~~a~~li~d~~~llLDE 241 (313)
.. =+.++.++...+.+++++.+.-.|.+
T Consensus 163 ~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 163 KSLDLVTMKKLDSKVNIIPIIAKADAISK 191 (427)
T ss_dssp CHHHHHHHHHTCSCSEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHHhhCCCEEEEEcchhccch
Confidence 11 15666777778889999998888876
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-13 Score=112.43 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=73.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCeEEEEeccCCCCCcccCCcccCHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~i~~v~q~~~~~~~~~ltv~e~l~~~ 176 (313)
.+++|++++|+||||||||||+++|+|. ++.|.|.+++.+. ...++|++|+.. ..+++.+++.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHH
Confidence 4789999999999999999999999995 5678888876431 112334444321 124666666553
Q ss_pred HHhc---CCCCCccHHHHH-HHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh
Q 021380 177 HARR---GAPWTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 177 ~~~~---~~~~~~~~~~~~-~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~ 251 (313)
.... +.....+. ... ..++.+.. .+..+..+|+|++|++.+++++..++ +++ +|+...+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ls~~~~~~v~~~R~~~r~~-------~~l-ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 76 AGRYAKEGYFVILDG-VVRPDWLPAFTA-LARPLHYIVLRTTAAEAIERCLDRGG-------DSL-SDPLVVADLHSQF 144 (191)
T ss_dssp HHHHHHTSCEEEECS-CCCTTTTHHHHT-TCSCEEEEEEECCHHHHHHHHHTTCT-------TSC-CCHHHHHHHHHHT
T ss_pred HHHHhccCCeEEEec-cCcHHHHHHHHh-cCCCeEEEEecCCHHHHHHHHHhcCC-------Ccc-CCHHHHHHHHHHH
Confidence 3211 10000000 000 00011110 12334579999999999977765543 333 5775554444433
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6e-12 Score=121.77 Aligned_cols=48 Identities=25% Similarity=0.175 Sum_probs=46.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
+|+++||+|++ +++||+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 66 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTT 66 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 89999999999 9999999999999999999999999 999999999865
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=107.27 Aligned_cols=142 Identities=7% Similarity=-0.003 Sum_probs=78.2
Q ss_pred cccccce-eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~-~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.|+++.+ .+++|++++|+||||||||||++.|++.+. +..|.+.+ +..+.. . +.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~-----------~~~~~~--------~-~~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIY-----------VTTEES--------R-DSII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEE-----------EESSSC--------H-HHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEE-----------EEcccC--------H-HHHH
Confidence 7888888 899999999999999999999999999887 66665543 222210 0 0000
Q ss_pred HHHHhcCCCCCc-cHHH---HHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc--EEEEcCccccc--Ch----h
Q 021380 175 EAHARRGAPWTF-NPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DG----G 242 (313)
Q Consensus 175 ~~~~~~~~~~~~-~~~~---~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llL--DE----~ 242 (313)
......+..... .... +......++ ........|.++.++...+.+...+++ ++++|++..++ |+ .
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~ 145 (235)
T 2w0m_A 68 RQAKQFNWDFEEYIEKKLIIIDALMKEKE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARK 145 (235)
T ss_dssp HHHHHTTCCCGGGBTTTEEEEECCC------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHH
T ss_pred HHHHHhcchHHHHhhCCEEEEeccccccC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHH
Confidence 000011111000 0000 000000000 001112347777666655555556788 99999999777 86 3
Q ss_pred hHHHHHHhhc----CeEEEEcChH
Q 021380 243 VWKDVSSMFD----EKWFIEVDLD 262 (313)
Q Consensus 243 ~~~~l~~l~~----~~i~vtHd~~ 262 (313)
+++.+.++.. .+++++|+..
T Consensus 146 ~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 146 ISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHHHHhCCCeEEEEeccCc
Confidence 4445544432 2469999983
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-12 Score=122.66 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=62.4
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------------CeEEEEeccCCCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHL 162 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------------~~i~~v~q~~~~~ 162 (313)
-+++||++.+|++++|+|+||||||||+++|+|+++ +++|+|.+.+.+.. ..++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999999 99999998765432 2378899875322
Q ss_pred CcccCCcccCHHHHHH
Q 021380 163 YLSQLDAMEDPKEAHA 178 (313)
Q Consensus 163 ~~~~ltv~e~l~~~~~ 178 (313)
+.+++.+++.+...
T Consensus 360 --p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 --SASVIFDAIQAAKA 373 (503)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh
Confidence 24688888877643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=113.86 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=38.8
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQ 145 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~ 145 (313)
+|++++ +.+|++++|+||||||||||+++|+|+++ |+ +|.|.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e 172 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIE 172 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEec
Confidence 566655 78999999999999999999999999998 87 89886543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.4e-13 Score=123.70 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=77.1
Q ss_pred ccccc-ceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCC----ce-eeeCCCCC--CCeEEEEeccCCCCCcc
Q 021380 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS-SFDSQVKP--PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 iL~~i-s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~----G~-i~~~~~~~--~~~i~~v~q~~~~~~~~ 165 (313)
.|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++... .+++++++|... ++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~-~~~- 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG-LDP- 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT-CCH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC-CCH-
Confidence 56665 6899999999999999999999999999998 5 665 57 77777553 234555666532 221
Q ss_pred cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
.++.+|+.+.. . .......++++.+. ..+.+||+|| .+++++++|++..++|.
T Consensus 194 -~~v~~ni~~~~-----~--~~~~~~~~~l~~~~----~~~~~lS~G~-----------~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 194 -DEVLKHIYVAR-----A--FNSNHQMLLVQQAE----DKIKELLNTD-----------RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp -HHHGGGEEEEE-----C--CSHHHHHHHHHHHH----HHHHHSSSSS-----------SCEEEEEEETSSTTHHH
T ss_pred -HHHhhCEEEEe-----c--CChHHHHHHHHHHH----HHHHHhcccc-----------CCCCEEEEeCchHhhhh
Confidence 25556554321 0 11111222232221 1234688888 34899999999999986
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-11 Score=101.62 Aligned_cols=136 Identities=15% Similarity=0.284 Sum_probs=77.8
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
--++.+|.+++|+|++|||||||++.|++.++ .+.++++|+++.....++.... ....+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~~~~~~~~~~~---~~~~~ 73 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFKPESEIETDKN---GFLQY 73 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBCCGGGSCBCTT---SCBCC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCccccCHhHhhcccc---CCChh
Confidence 34678999999999999999999999999772 1688999976543221111000 00000
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcC
Q 021380 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 260 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd 260 (313)
......+...+.+.+..+.... ..+.++.|+++ ..+..+++.|+.++.-++. +.+..+.++++.-+
T Consensus 74 ~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~~~ 139 (207)
T 2qt1_A 74 DVLEALNMEKMMSAISCWMESA--RHSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLTIP 139 (207)
T ss_dssp SSGGGBCHHHHHHHHHHHHHHH--TTSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEECC
T ss_pred HHHHHhHHHHHHHHHHHHHhCC--CCCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEECC
Confidence 1111223333333332221110 12255666654 2236788999977665543 33556777899999
Q ss_pred hHHHHHHHHhh
Q 021380 261 LDTAMQRVLKR 271 (313)
Q Consensus 261 ~~~~~~rvigr 271 (313)
.+....|+..|
T Consensus 140 ~~~~~~R~~~R 150 (207)
T 2qt1_A 140 YEECKRRRSTR 150 (207)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHc
Confidence 98887777644
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-12 Score=115.43 Aligned_cols=113 Identities=15% Similarity=-0.005 Sum_probs=68.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------CeEEEEeccCCCCCcccC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~~i~~v~q~~~~~~~~~l 167 (313)
++++++|.+++| ++|+||||||||||+++|+|.+. + |.+.+++.+.. +.+++++|...... +.+
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~-p~i 106 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSA-PCV 106 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC-SEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC-CCe
Confidence 899999999999 99999999999999999999986 5 67877775431 12445555421111 124
Q ss_pred CcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccC
Q 021380 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 168 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
++.+++......++.. .. .......+..+.+|||||+||+.+++++...
T Consensus 107 ~~~Deid~~~~~r~~~------~~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDR------ET----GASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp EEEETCTTTCC-------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred EeeehhhhhhcccCCC------cc----hHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 5556554321111000 00 0000001123447899999999994443333
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-14 Score=130.98 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=33.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh--------cccCCCCceeeeCCCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKASSFDSQVK 147 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll--------~~~~p~~G~i~~~~~~ 147 (313)
++++|+|+||||||||+|.|.|+. . |+.|+|.++|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHHH
Confidence 689999999999999999999986 5 899999887743
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.11 E-value=8.9e-13 Score=118.92 Aligned_cols=136 Identities=17% Similarity=0.066 Sum_probs=82.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
.+++++.+.|+... ++++++|.+++| ++|+||||+|||||+++|++.+. .|.+.+++.+. .
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~ 118 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 118 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHH
Confidence 34677888887666 899999999999 99999999999999999999874 56776654221 1
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
..+.+++|..... .+.+++.|++...................+.+..+ ...|||||+||+.+ +.+
T Consensus 119 ~~i~~~~~~~~~~-~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------l~~lsgg~~~~~~i-------~~a 183 (278)
T 1iy2_A 119 ARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------LVEMDGFEKDTAIV-------VMA 183 (278)
T ss_dssp HHHHHHHHHHHTS-CSEEEEEETHHHHHCC--------CHHHHHHHHHH-------HHHHTTCCTTCCEE-------EEE
T ss_pred HHHHHHHHHHHhc-CCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------HHHHhCCCCCCCEE-------EEE
Confidence 1234455553211 12367778875432211100000011111222221 12578999999999 666
Q ss_pred EEEcCcccccCh
Q 021380 230 VIVDGNYLFLDG 241 (313)
Q Consensus 230 li~d~~~llLDE 241 (313)
+..+|.+ +|+
T Consensus 184 ~t~~p~~--ld~ 193 (278)
T 1iy2_A 184 ATNRPDI--LDP 193 (278)
T ss_dssp EESCTTS--SCH
T ss_pred ecCCchh--CCH
Confidence 6666654 675
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-13 Score=120.03 Aligned_cols=130 Identities=13% Similarity=0.040 Sum_probs=77.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCceeeeCCCCCCC----eEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSFDSQVKPPD----VATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~---Gll~~~~p~~G~i~~~~~~~~~----~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
++++++|+||||||||||+++|+ |+.. ++.|++.+++..... .+.+++|++...+ ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999 8877 899998776532111 1223344433222 3566676665332
Q ss_pred --------hcCCCCCccHHHHHHHHH--Hhh--------------cCCCccCCCCCccCCCcchhhhhc-ccCccEEEEc
Q 021380 179 --------RRGAPWTFNPLLLLNCLK--NLR--------------NQGSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 233 (313)
Q Consensus 179 --------~~~~~~~~~~~~~~~~l~--~l~--------------~~~~~~~~~LSgGekqRv~la~al-~~~a~~li~d 233 (313)
..+.+... ..+..+.. .++ ...++.+..||| |+ +++ +.+++++++|
T Consensus 101 ~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 12223221 22222211 111 112445668998 65 444 7778888888
Q ss_pred ----CcccccChhhHHHHHH
Q 021380 234 ----GNYLFLDGGVWKDVSS 249 (313)
Q Consensus 234 ----~~~llLDE~~~~~l~~ 249 (313)
+|+..+|+...+.+.+
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~ 191 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAA 191 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHH
T ss_pred cccccccccCCCCcHHHHHH
Confidence 8998888844443333
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-11 Score=107.39 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=88.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCceee--------eCCCCCC---------CeEEEEeccCCC---
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSF--------DSQVKPP---------DVATVLPMDGFH--- 161 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~---Gll~~~~p~~G~i~--------~~~~~~~---------~~i~~v~q~~~~--- 161 (313)
.+|++++|+|||||||||++++|+ |+.. +++|.+. .+|.+.. ..+++++|....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQ 101 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCce
Confidence 789999999999999999999999 7776 9999998 6665431 235666654211
Q ss_pred CCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCc---ccc
Q 021380 162 LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN---YLF 238 (313)
Q Consensus 162 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~---~ll 238 (313)
......++.+++.................+.+.+..+.. .++. ... ++.++. +++
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~-------~~a~--------------~~~-~V~~gr~~~~~v 159 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQR-------AFRE--------------APG-LIADGRDMGTIV 159 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHH-------TTCC--------------SSC-EEEEESSCCCCC
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------HHhh--------------CCC-EEEEeceeceee
Confidence 001123444554321110000000011222333322211 1111 122 333432 223
Q ss_pred cChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccC--ChhHHHHHHHHhcCCchHH-HHHhhcCCCC-EEeccCC
Q 021380 239 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 239 LDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G--~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD-~i~~~~~ 312 (313)
+++ .+..||++-+.++..+|+..+....| ...+.+...+...+..... ++.|.+..+| ++|++++
T Consensus 160 ~~~---------~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 160 FPD---------APVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp STT---------CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred cCC---------CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 331 34468999999998887764444333 2333333334444444443 7788888888 8888764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-11 Score=109.61 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=58.7
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---CCCCCC--------CeEEEEeccCCCC--------
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL-------- 162 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---~~~~~~--------~~i~~v~q~~~~~-------- 162 (313)
|++..|++++|+||||||||||+|+|+|++. |++|+|.+ +|.... +.+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 4567899999999999999999999999999 99999998 665421 2378899886321
Q ss_pred ------CcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc
Q 021380 163 ------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 163 ------~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 200 (313)
..+++++ +|+.+.... .......++.++|+.++.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCC
Confidence 1235788 888764211 122334567788888875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-12 Score=115.74 Aligned_cols=132 Identities=17% Similarity=0.083 Sum_probs=80.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
.+++++.+.|++.. +++++++++++| ++|+||||+|||||+++|++.+. .|.+.+++.+. .
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~ 94 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 94 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHH
Confidence 44677888887665 899999999999 99999999999999999999874 56676654221 0
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCC----CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
+.+.+++|..... .+.+.+.|++.......+. ........+..++ ..|||||+||+.+
T Consensus 95 ~~i~~~~~~~~~~-~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-----------~~l~g~~~~~~~i------ 156 (254)
T 1ixz_A 95 ARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-----------VEMDGFEKDTAIV------ 156 (254)
T ss_dssp HHHHHHHHHHTTS-SSEEEEEETHHHHHC---------CHHHHHHHHHHH-----------HHHHTCCTTCCEE------
T ss_pred HHHHHHHHHHHhc-CCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-----------HHHhCCCCCCCEE------
Confidence 1234455542211 1236677887543221111 0111111222222 2468999999998
Q ss_pred CccEEEEcCcccccCh
Q 021380 226 QHKVVIVDGNYLFLDG 241 (313)
Q Consensus 226 ~a~~li~d~~~llLDE 241 (313)
+.++..+|.. +|+
T Consensus 157 -~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 157 -VMAATNRPDI--LDP 169 (254)
T ss_dssp -EEEEESCGGG--SCG
T ss_pred -EEEccCCchh--CCH
Confidence 4555554433 554
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-10 Score=100.37 Aligned_cols=185 Identities=24% Similarity=0.372 Sum_probs=106.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH---hcCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGA 182 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~---~~~~ 182 (313)
+.-+|+|.|+.||||||+.+.|+..+.. + .++ .....+.+++.|.++.. +. ...+..... .++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~-----~~d--~~~~~~~~i~~D~~~~~---~~-~~~~~~~~~g~~~f~~ 87 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N-----EVD--YRQKQVVILSQDSFYRV---LT-SEQKAKALKGQFNFDH 87 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG--G-----GSC--GGGCSEEEEEGGGGBCC---CC-HHHHHHHHTTCSCTTS
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh--h-----ccc--ccCCceEEEecCccccc---cC-hhhhhhhccCCCCCCC
Confidence 3458999999999999999999987641 1 000 01123556888865421 11 111111100 1122
Q ss_pred CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+..++...+.+.|+.+........+.++.....++.-.. ......+++.|+.+++.++ .+.+.++.+|+++-+.+
T Consensus 88 ~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~-~~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~~~e 162 (252)
T 1uj2_A 88 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDTDAD 162 (252)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH----HHHHHCSEEEEEECCHH
T ss_pred cchhhHHHHHHHHHHHHcCCeeecCccccccccCCCcee-eeCCCcEEEEeeeccccCH----HHHHhcCeeEEEeCCHH
Confidence 344555666666766653322222222221111221000 0123578999998776664 35566777899999999
Q ss_pred HHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEe
Q 021380 263 TAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 308 (313)
Q Consensus 263 ~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~ 308 (313)
...+|+..|.. ..|...+.+..++...+.+.++ ++.|.+..||+++
T Consensus 163 ~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 163 TRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred HHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 98888876643 4465555555556655555444 7888888999998
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-11 Score=107.91 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=42.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.+
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC------
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEE
Confidence 5888898776642 344455 8999999999999999999999999 999999988754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=92.89 Aligned_cols=37 Identities=35% Similarity=0.382 Sum_probs=26.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++||||++.+|.+++|+|++||||||+.+.|++.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999885
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-11 Score=106.16 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=37.2
Q ss_pred CeEEEccc-eeEc-cccccccccccccceeecC---CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 76 ~~l~v~~l-s~~y-~~~~~~~~iL~~is~~i~~---Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|+++|+ ++.| ++.. +|+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 9999 6655 99999999999 99999999999999999999999885
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-11 Score=113.08 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=59.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---CCCCCC------Ce-EEEEeccCCCCCcc--cCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP------DV-ATVLPMDGFHLYLS--QLDA 169 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---~~~~~~------~~-i~~v~q~~~~~~~~--~ltv 169 (313)
+++.+|++++|+||||+|||||+|+|+|++. |.+|+|.+ .|.... +. +++++|.+...... .+++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 7788999999999999999999999999998 99999987 554321 11 68898886432211 3566
Q ss_pred ccCHH--HHH-H-h------cCC-CCCccHHHHHHHHHHhhcCC--CccCCCCCccCCC
Q 021380 170 MEDPK--EAH-A-R------RGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (313)
Q Consensus 170 ~e~l~--~~~-~-~------~~~-~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekq 215 (313)
+++. |.. . . .+. ........+.++++.++... ...+..|+.|++|
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 7763 221 1 1 121 12223345677788777532 2344456666555
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=99.84 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=102.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCC-cccCCcccCHHHHHH----hc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEAHA----RR 180 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~-~~~ltv~e~l~~~~~----~~ 180 (313)
++-++||.|++||||||+.+.|...+. . . ...+.++..|.++.. ...++. .+..... .+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg---~-~----------~~~~~vI~~D~~~r~~~~~~~~--~~~~~~~~g~~~~ 67 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR---R-E----------GVKAVSIEGDAFHRFNRADMKA--ELDRRYAAGDATF 67 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH---H-H----------TCCEEEEEGGGGBSCCHHHHHH--HHHHHHHHTCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh---h-c----------CCCeeEeecchhhcCCHHHhhh--hhhhhhhccCcCc
Confidence 456899999999999999999998763 1 0 112577888876532 111000 0000001 11
Q ss_pred CC--CCCccHHHHHHHHHHhhcCCCccCCCCCc---------cCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHH
Q 021380 181 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 181 ~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSg---------GekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~ 249 (313)
.. +...+...+.+.+..+........+.|.. .....+.-...+.....+++.|+.++++.. ....+.+
T Consensus 68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~ 146 (290)
T 1a7j_A 68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAG 146 (290)
T ss_dssp STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGG
T ss_pred CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHH
Confidence 22 33344455555555554222222222211 011111000112224678999998887320 0012445
Q ss_pred hhcCeEEEEcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCE------EeccCC
Q 021380 250 MFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSID 312 (313)
Q Consensus 250 l~~~~i~vtHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~------i~~~~~ 312 (313)
.++..|||+-+.++...|++.|.+ .+|...+.+...+... .+.++ ||.|.+..||+ +|+++.
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 677789999999998888887664 4575544444444444 55555 99999999999 777653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-10 Score=94.69 Aligned_cols=116 Identities=8% Similarity=-0.034 Sum_probs=67.5
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---------CCC-----CCCCeEEEEeccCCCCC
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---------SQV-----KPPDVATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---------~~~-----~~~~~i~~v~q~~~~~~ 163 (313)
++++|++.+| +.+|+||||||||||+++|.+++. +..|.... .+. .....+.++++++....
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~ 93 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGF 93 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcccccccccchheeecccccCCCCceEEEEEEEeCCCccc
Confidence 6788999999 999999999999999999999997 76664322 111 12235777888753221
Q ss_pred cc---cCCcccCHHHH-HHhcCC-CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcch
Q 021380 164 LS---QLDAMEDPKEA-HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 164 ~~---~ltv~e~l~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~ 218 (313)
+. .+++...+... ...+.. ........+.+++..++...+. +.-++.|+.+++.
T Consensus 94 ~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~-~~~~~qg~~~~l~ 152 (182)
T 3kta_A 94 PIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG-YNIVLQGDITKFI 152 (182)
T ss_dssp SSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC-TTEECTTCTTHHH
T ss_pred ccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC-CEEEEcccHHHHH
Confidence 11 12332221100 000000 1112345677777777644332 2346777776654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-10 Score=101.09 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHH-HHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~-Gll~ 132 (313)
..+++||++++|+++||+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999 9984
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=93.99 Aligned_cols=130 Identities=15% Similarity=0.059 Sum_probs=77.1
Q ss_pred cccccce-eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~-~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.|+++.. .+++|++++|+||||||||||++.|++ . +.. .+.|+..+.. .+. +.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~------------~v~~i~~~~~------~~~-~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGK------------KVAYVDTEGG------FSP-ERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCS------------EEEEEESSCC------CCH-HHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCC------------cEEEEECCCC------CCH-HHHH
Confidence 5777765 799999999999999999999999999 3 221 2445554421 111 1111
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCC--CcchhhhhcccC-ccEEEEcCcccccCh----------
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDDILVGLQ-HKVVIVDGNYLFLDG---------- 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGek--qRv~la~al~~~-a~~li~d~~~llLDE---------- 241 (313)
......+. +.+ ++++.+ .+..++++++ +++..+++++.. ++++++|++..++|.
T Consensus 64 ~~~~~~~~----~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 64 QMAETRGL----NPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp HHHHTTTC----CHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred HHHHhcCC----ChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 11111111 111 222222 2335566654 456666677764 999999999999884
Q ss_pred --hhHHHHHHhhc----CeEEEEcChH
Q 021380 242 --GVWKDVSSMFD----EKWFIEVDLD 262 (313)
Q Consensus 242 --~~~~~l~~l~~----~~i~vtHd~~ 262 (313)
.++..|.++.+ .+++++|...
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 12223444433 2468888765
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-10 Score=116.43 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCcc--EEEEcCcccccCh----hhHHHHHHhhc---CeEEEE
Q 021380 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIE 258 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llLDE----~~~~~l~~l~~---~~i~vt 258 (313)
..+.|..++.. .++++.+|||||+|||+||++++..+. ++++|+|+..||+ .+++.|.++.+ .+|+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34556666642 467888999999999999999998666 9999999999999 44555555544 257999
Q ss_pred cChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 259 VDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 259 Hd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
||++++.. |++ |++++.|+++++..
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99998765 443 57888999988754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-10 Score=118.50 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=82.9
Q ss_pred cCCcccCHHHHHHhcCCCCC----------ccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC--ccEE
Q 021380 166 QLDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVV 230 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~--a~~l 230 (313)
.+||.+++.|.. ..+.+.. ....++ +.|..+|.. .++.+.+|||||+||+.||.++..+ +.++
T Consensus 451 ~ltV~e~~~f~e-~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFFD-GLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHHH-HCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 368888888853 3333321 111222 346777743 5778889999999999999999987 4899
Q ss_pred EEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
++|+|+..||+ .+++.|+++.+ .+|+|+||++++.. |++ |++++.|++.++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999998 45555555544 36799999998654 443 57888888877643
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-09 Score=98.22 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=68.5
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
.++|...+|++++|+|+|||||||+++.|++.+. +..|+|. ++..|.+ .. .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~-----------lv~~D~~---r~--~---------- 146 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVV-----------LAAADTF---RA--A---------- 146 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEE-----------EEEECTT---CH--H----------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEE-----------EEccccc---cH--H----------
Confidence 4567788999999999999999999999999998 7666554 3444422 10 0
Q ss_pred hcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcc---hhhhhcccCccEEEEcCccc
Q 021380 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv---~la~al~~~a~~li~d~~~l 237 (313)
..+.+..+++.++.. .++.+|+|+.+++ +++.++...+++++.|.+-.
T Consensus 147 --------a~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 147 --------AIEQLKIWGERVGAT---VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------HHHHHHHHHHHHTCE---EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------HHHHHHHHHHHcCCc---EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011223334444321 2456789999998 77777888888888887654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-09 Score=88.73 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=31.9
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
+|.+.+|+.++|+||||+|||||++.|++.+. |..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 56778899999999999999999999999996 5555
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.6e-10 Score=94.36 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=37.8
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|++..++... +.+..++..++|++++|+||||||||||++.|++.+.
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777777666 7888999999999999999999999999999999994
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.5e-09 Score=95.07 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=63.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCCceeeeCCCCCC------CeEEEEeccCCCCCcccCCcccCHHHHHHhcC
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPP------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G-ll~~~~p~~G~i~~~~~~~~------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~ 181 (313)
.+.|.||||+|||||++.|++ ++. |+.|.+.++|.... ..++++++..+.. +...+ .+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLE----ITPSD--------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC------------------CCEECSSEEE----ECCC-----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccceEE----ecHhh--------cC
Confidence 389999999999999999999 667 89999988765421 2345555543211 11100 00
Q ss_pred CCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----C--
Q 021380 182 APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E-- 253 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~-- 253 (313)
. .....+.+.++.+.... .... .||| +..+++++++|++.. ||+...+.+.+.+. .
T Consensus 103 ~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 103 N---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred C---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 0 11112344444443111 1111 4455 344588999999888 88855555555443 2
Q ss_pred eEEEEcChHHH
Q 021380 254 KWFIEVDLDTA 264 (313)
Q Consensus 254 ~i~vtHd~~~~ 264 (313)
.|++||+.+.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 46999997643
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-10 Score=108.04 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=70.2
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---CCCeEEEEeccCCCCCcccCCcccCH
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~---~~~~i~~v~q~~~~~~~~~ltv~e~l 173 (313)
-++++|+++.|++++|+|+||||||||+++|+|.. | .+.+.+ ....++++.+++.. .+++.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~-----~i~~~~ftTl~p~~G~V~~~~~~----~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----P-----KIAPYPFTTLSPNLGVVEVSEEE----RFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----C-----EECCCTTCSSCCEEEEEECSSSC----EEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----c-----cccCcccceecceeeEEEecCcc----eEEEEecc
Confidence 35899999999999999999999999999999974 2 111111 12235666655310 12222221
Q ss_pred HHH---HHhcCCCCCccHHHHHHHHHH-------hhcCCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 174 KEA---HARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 174 ~~~---~~~~~~~~~~~~~~~~~~l~~-------l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
-+. ....+.. .. +...++. +... ..++.+||+|++|++.++.+++..+.++++
T Consensus 214 Gli~~a~~~~~L~----~~-fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 214 GIIEGASEGKGLG----LE-FLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp CCCCCGGGSCCSC----HH-HHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred ccccchhhhhhhh----HH-HHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 110 0000010 11 1111111 1112 345558999999999999988888898887
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-08 Score=81.19 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=29.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55555 899999999999999999999999996
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-09 Score=107.02 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=92.4
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-ceeeeCCCCC---CCeEEEE
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKP---PDVATVL 155 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~-G~i~~~~~~~---~~~i~~v 155 (313)
-++++..||... +++++++.+..|+.++|+||||+|||||+++|+++++ +.. |.+.+.+... ...+.++
T Consensus 37 p~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 37 EKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp SSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEEE
Confidence 456777788776 8999999999999999999999999999999999998 766 6666655432 2346666
Q ss_pred eccCC--------------------CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccC
Q 021380 156 PMDGF--------------------HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 156 ~q~~~--------------------~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGe 213 (313)
++... .+....+++.+|+....... .+............+.++. ........+++|+
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~-~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGR-TKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTC-SSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccC-CCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 54420 00111233333332110000 0000000000111123331 1222335799999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~ 252 (313)
+|++........+..+|++|+.-. |++..+..|.+.++
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred cccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 999887666555556666666444 35566666655543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.5e-08 Score=83.14 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=40.3
Q ss_pred EEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEe
Q 021380 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~ 308 (313)
.++.+.+++. |.. +...++.+++++.+.++..+|+..|. |.+.+.+..++.. ..+..+ ....||++|
T Consensus 107 ~vv~~~~~l~--e~~---~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~----~~~~ad~vI 173 (206)
T 1jjv_A 107 YTLFVVPLLI--ENK---LTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQE----RLKWADDVI 173 (206)
T ss_dssp EEEEECTTTT--TTT---CGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHH----HHHHCSEEE
T ss_pred EEEEEechhh--hcC---cHhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHH----HHHhCCEEE
Confidence 5666665432 211 34566778999999999888887653 4455545454443 222222 233689999
Q ss_pred ccCC
Q 021380 309 KSID 312 (313)
Q Consensus 309 ~~~~ 312 (313)
++..
T Consensus 174 dn~~ 177 (206)
T 1jjv_A 174 NNDA 177 (206)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 8764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=7.1e-09 Score=94.44 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=45.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
+.++++++.|+.. . ++++|+ +|++++|+|+||+||||++..|++++. +..|+|.+
T Consensus 77 ~~~~~l~~~~~~~-----~-~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l 131 (295)
T 1ls1_A 77 TVYEALKEALGGE-----A-RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLL 131 (295)
T ss_dssp HHHHHHHHHTTSS-----C-CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEE
T ss_pred HHHHHHHHHHCCC-----C-ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEE
Confidence 4567888888643 2 678888 899999999999999999999999998 76666554
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-09 Score=100.00 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=35.3
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHH------------HhcccCCCCceeeeCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKASSFDSQ 145 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~G------------ll~~~~p~~G~i~~~~ 145 (313)
.+.+|.++||+|+||||||||+++|+| .+. |+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCC
Confidence 567899999999999999999999999 344 8889988876
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.6e-09 Score=84.71 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=47.9
Q ss_pred CccCCCCCccCCCcchhh------hhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChH
Q 021380 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD 262 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la------~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~ 262 (313)
++++.+||||||||++|| ++++.+++++++|+|+..||+. +.+.+.++.. .+|++|||.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 456779999999999886 7888899999999999999994 4444444433 2579999985
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=86.08 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999984
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-08 Score=104.95 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=68.1
Q ss_pred HHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcCh
Q 021380 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~ 261 (313)
.|..++.. .++.+.+|||||+|||.||.+++..+ .++++|+|+..||+ .+++.|..+.+ .+|+|+||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45566633 47788899999999999999999988 59999999999998 34444444443 357999999
Q ss_pred HHHHH--HHH----------hhhhccCChhHHHH
Q 021380 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+++.. |++ |++++.|+++++..
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 96643 433 56778888877643
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-08 Score=84.87 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.2
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
++|.+|++++|+|||||||||++++|++++. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 3578999999999999999999999999986 6544
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-08 Score=95.12 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=53.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +..|++.+
T Consensus 30 ~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~v~v 89 (341)
T 2p67_A 30 LVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLKVAV 89 (341)
T ss_dssp HHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCCEEE
T ss_pred HhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEE
Confidence 577788888888776 8999999999999999999999999999999999997 77776654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=78.40 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=41.2
Q ss_pred cEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEE
Q 021380 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 307 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i 307 (313)
.+++.|++++.-. .+..+.+.+++++-+.++..+|+..| |...+.+..++... .+. .+....||++
T Consensus 106 ~~vive~~~l~~~-----~~~~~~~~~i~l~~~~e~~~~Rl~~R----~~~~~~~~~~~~~~-~~~----~~~~~~ad~v 171 (204)
T 2if2_A 106 TLFILEASLLVEK-----GTYKNYDKLIVVYAPYEVCKERAIKR----GMSEEDFERRWKKQ-MPI----EEKVKYADYV 171 (204)
T ss_dssp CCEEEECSCSTTT-----TCGGGSSEEEEECCCHHHHHHHHHHT----CCCHHHHHHHHTTS-CCH----HHHGGGCSEE
T ss_pred CEEEEEccccccC-----CchhhCCEEEEEECCHHHHHHHHHHc----CCCHHHHHHHHHhC-CCh----hHHHhcCCEE
Confidence 5667777654321 12234566789999999888888766 44434344444332 222 2334567999
Q ss_pred eccC
Q 021380 308 IKSI 311 (313)
Q Consensus 308 ~~~~ 311 (313)
|++.
T Consensus 172 Id~~ 175 (204)
T 2if2_A 172 IDNS 175 (204)
T ss_dssp CCCS
T ss_pred EECC
Confidence 8875
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.1e-09 Score=100.14 Aligned_cols=135 Identities=17% Similarity=0.092 Sum_probs=78.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~-------- 149 (313)
.+++++...|.+.. +++++++.+++| +.|+||||+|||||++.|++... .+.+.+++.+..
T Consensus 41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~ 109 (499)
T 2dhr_A 41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 109 (499)
T ss_dssp HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHH
T ss_pred HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHH
Confidence 44566666676655 899999999999 99999999999999999999874 456666543211
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCC----CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
..+..+++..... .+.+.+.|++.......+. ........+..++. .||||++++..++.+...
T Consensus 110 ~~v~~lfq~a~~~-~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-----------~Ldg~~~~~~viviAatn 177 (499)
T 2dhr_A 110 ARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-----------EMDGFEKDTAIVVMAATN 177 (499)
T ss_dssp HHHHHHTTTSSSS-SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-----------HGGGCCSSCCCEEEECCS
T ss_pred HHHHHHHHHHHhc-CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-----------HhcccccCccEEEEEecC
Confidence 1123344442211 1124455555332111110 00011122233332 367999999888666666
Q ss_pred CccEEEEcCccc
Q 021380 226 QHKVVIVDGNYL 237 (313)
Q Consensus 226 ~a~~li~d~~~l 237 (313)
.+.. +|+.++
T Consensus 178 ~p~~--LD~aLl 187 (499)
T 2dhr_A 178 RPDI--LDPALL 187 (499)
T ss_dssp CGGG--SCTTTS
T ss_pred Chhh--cCcccc
Confidence 5554 444443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=79.94 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=36.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
.+|++++|+|+||+||||+++.|++.+. +++| +.+.++.+|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G----------~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH----------KKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC----------CCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC----------CEEEEEecCcc
Confidence 5799999999999999999999999997 6666 23677887753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.46 E-value=9.2e-08 Score=88.02 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=41.4
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.+++|++.+|++++|+|+||+||||++..|++.+. +..|+|.+.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~ 141 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAA 141 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEEC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeC
Confidence 68999999999999999999999999999999998 88888766443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-08 Score=80.93 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999885
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-07 Score=79.56 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=25.7
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..++|++++|+||||||||||+++|++.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35567899999999999999999999999873
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-07 Score=86.74 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=25.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH--HHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~--Gll~ 132 (313)
-|++|++++|+||||||||||++.|+ ++++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 68999999999999999999999554 5554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-07 Score=88.30 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=45.6
Q ss_pred CCCccCCCcchhhhhcc----cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHH
Q 021380 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 208 ~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
.||||||||++||++++ .++.++++|+++..||+. +.+.|.++.. .+|++||+....
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 49999999999999998 578999999999999994 4444444432 357999997654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-07 Score=88.56 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=35.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+++++.+++|++++|+||||||||||+++|+|.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 7899999999999999999999999999999999763
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-07 Score=81.70 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=27.6
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-++..++|++++|.|+||||||||+++|+|+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3446689999999999999999999999886
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-07 Score=79.52 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=26.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-+++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999999999995
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-07 Score=92.37 Aligned_cols=156 Identities=12% Similarity=0.003 Sum_probs=79.2
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccC--CcccCHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKE 175 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G-ll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~l--tv~e~l~~ 175 (313)
.+++++.++..+.|.|++||||||+++.|.. ++.. .+.|++.+...+.+. .. ++. +... +++ ++..+...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~l~liDpK~-~e--l~~-~~~l-Phl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVRFIMIDPKM-LE--LSV-YEGI-PHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEEEEEECCSS-SG--GGG-GTTC-TTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEEEEEECCch-hh--hhh-hccC-CcccceeecCHHH
Confidence 4788899999999999999999999999876 3321 455655443222211 00 111 1111 112 35555544
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCC----CccC-CCCCccCCCcch----------hhhhcccCcc-EEEEcCccccc
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRNQG----SVYA-PSFDHGVGDPVE----------DDILVGLQHK-VVIVDGNYLFL 239 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~-~~LSgGekqRv~----------la~al~~~a~-~li~d~~~llL 239 (313)
..........+...+ .++|...+... +.++ ..+|+|++|+.. ++..+...+. +++.|+...++
T Consensus 232 a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll 310 (512)
T 2ius_A 232 AANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLM 310 (512)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHH
Confidence 322111111111222 24444444211 1111 257899998742 2223333454 66777776666
Q ss_pred Ch---hhHHHHHHhh---c----CeEEEEcChH
Q 021380 240 DG---GVWKDVSSMF---D----EKWFIEVDLD 262 (313)
Q Consensus 240 DE---~~~~~l~~l~---~----~~i~vtHd~~ 262 (313)
+. .+.+.+..+. . ..|++||.+.
T Consensus 311 ~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 311 MTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 53 2223333332 2 1368999977
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.2e-06 Score=68.91 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=39.7
Q ss_pred cChhhHHHHHHhhc---CeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccC
Q 021380 239 LDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 239 LDE~~~~~l~~l~~---~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 311 (313)
+++...+.+.++.. .+|+++-+.+++.+|+..|.... .+.+.+..++.....+ ....+|++|++.
T Consensus 96 ~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~Id~~ 163 (202)
T 3t61_A 96 LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHF-MPSSLLQTQLETLEDP-------RGEVRTVAVDVA 163 (202)
T ss_dssp CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSC-CCHHHHHHHHHHCCCC-------TTSTTEEEEESS
T ss_pred CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccC-CCHHHHHHHHHhcCCC-------CCCCCeEEEeCC
Confidence 45566666666552 35789999999888887664321 2355555555443322 344578888765
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-07 Score=90.49 Aligned_cols=40 Identities=28% Similarity=0.228 Sum_probs=34.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-eee-eCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF-DSQ 145 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~i~-~~~ 145 (313)
.+.+|++++|+|+||||||||+++|+|.+. |++| ++. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECC
Confidence 678999999999999999999999999998 8876 553 443
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-07 Score=76.89 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=48.5
Q ss_pred CccCCCCCccCCCcchhhhhccc----CccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHHH
Q 021380 203 SVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAM 265 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~~ 265 (313)
.+.+..||||||||++||++++. ++.++++|++...||+. +.+.|.++... .|+|||+.....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~ 131 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMA 131 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHH
Confidence 34567899999999999999963 47999999999999994 44444444332 579999976543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.2e-07 Score=78.06 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.5e-07 Score=88.69 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=49.9
Q ss_pred cCCCC-CccCCCcchhhhhcccCc--cEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~L-SgGekqRv~la~al~~~a--~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++..| ||||+||++||++++.++ ++|++|+|+..||.. +.+.|.++.+ .+|+||||++++..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 45577 999999999999999999 999999999999983 4444444432 35799999987754
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-07 Score=92.18 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=52.0
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
-++++.+.|+... ++.++++++ +|+.++|+||||+|||||+++|++.+. +..|.|.+++.
T Consensus 85 G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~~ 144 (543)
T 3m6a_A 85 GLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGGV 144 (543)
T ss_dssp SCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC-
T ss_pred cHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEeccc
Confidence 3577888887766 889999999 899999999999999999999999998 88888887663
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.4e-06 Score=73.26 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=39.0
Q ss_pred CeEEEEcChHHHHHHHHhhhhccC--ChhHHHHHHHHhcCCchHH-HHHhhcCCCC-EEeccCC
Q 021380 253 EKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 253 ~~i~vtHd~~~~~~rvigr~v~~G--~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD-~i~~~~~ 312 (313)
-.||++-++++..+|+..+....| ...+-+...+...+..... |+.|.+...| ++|++++
T Consensus 148 lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 148 VKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred EEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 458999999998888876555443 2333333344444444444 7788777666 9998864
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.5e-07 Score=73.24 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|++++|+|+|||||||+++.|++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999999999873
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=77.32 Aligned_cols=72 Identities=19% Similarity=0.441 Sum_probs=47.3
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
..+++.|+.+++-. .+...++.+|+++-+.+++.+|+..|. |.+.+.+..++... .+..+++ ..||+
T Consensus 181 ~~~vIveg~~l~~~-----~~~~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~ 247 (281)
T 2f6r_A 181 KTLCVIDAAMLLEA-----GWQSMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNV 247 (281)
T ss_dssp CCEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSE
T ss_pred CCEEEEEechhhcc-----chHHhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCE
Confidence 46788898865422 133456778999999999888888663 54555555555544 4444444 35899
Q ss_pred EeccC
Q 021380 307 VIKSI 311 (313)
Q Consensus 307 i~~~~ 311 (313)
+|++.
T Consensus 248 vIdn~ 252 (281)
T 2f6r_A 248 VLSTL 252 (281)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99876
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=72.59 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.|.+++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999985
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-06 Score=73.90 Aligned_cols=39 Identities=26% Similarity=0.196 Sum_probs=29.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc--CC------CCceeeeCCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKI--WP------QKASSFDSQV 146 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~--~p------~~G~i~~~~~ 146 (313)
-.++|+|+||||||||++.++|..... .| +.|+|.++|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 378999999999999999999987510 01 3677777663
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-06 Score=74.12 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=26.7
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999999999874
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.5e-05 Score=62.19 Aligned_cols=79 Identities=16% Similarity=0.068 Sum_probs=44.3
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhc---CeEEEEcChHHHHHHHHhhhhc-cCChhHHHHHHHHhcCCchHHHHHhhcC
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKK 302 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~---~~i~vtHd~~~~~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~~i~~~~~ 302 (313)
...++.|+- ++....+.+.+... .+|++.-+.+.+.+|+..|.-. .+...+.+..++.... ...+.+...
T Consensus 78 ~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~ 151 (179)
T 3lw7_A 78 HDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREEL---KLGIGEVIA 151 (179)
T ss_dssp CSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHH---HHTHHHHHH
T ss_pred CCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhh---ccChHhHHH
Confidence 455677773 55555666666654 4679999999988888755321 1222232222221100 111344556
Q ss_pred CCCEEeccC
Q 021380 303 NADLVIKSI 311 (313)
Q Consensus 303 ~aD~i~~~~ 311 (313)
.||++|++.
T Consensus 152 ~ad~vId~~ 160 (179)
T 3lw7_A 152 MADYIITND 160 (179)
T ss_dssp TCSEEEECC
T ss_pred hCCEEEECC
Confidence 799999875
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.9e-06 Score=80.71 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=73.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH-
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK- 174 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~- 174 (313)
.|+++..-+.+|+++.|.|++|+|||||+..|++... +..| ..+.|+..+.. .. .+...+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E~s---~~--~l~~r~~~ 253 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLEMS---AQ--QLVMRMLC 253 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESSSC---HH--HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECCCC---HH--HHHHHHHH
Confidence 7888888899999999999999999999999999875 4333 12455554411 00 0000000
Q ss_pred ------HHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccC
Q 021380 175 ------EAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 175 ------~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLD 240 (313)
......+.....+..++.+.+..+.... -...+.+|.++.+..+.......++++++.|...++.+
T Consensus 254 ~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 254 AEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 0000111111223334455555554211 11235788887653332222235789999999888774
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.4e-06 Score=73.69 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=27.6
Q ss_pred cccccceeec---CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~---~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566666665 999999999999999999999999996
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-06 Score=80.77 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred eEEEccceeEcccccccccccc--------------ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~--------------~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+.++||+..|.... ..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 377999999997532 2777 8999999999999999999999999999999875
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-06 Score=81.77 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=43.2
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
.+++++.|++.. ++++|+ +|.+++|+|+|||||||++..|++.+. +..|+|.+
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vll 131 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLL 131 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEE
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEE
Confidence 356777886532 578887 899999999999999999999999998 76666554
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-06 Score=75.53 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=30.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
+.+++|+||+||||||++++|++.+...+++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999988311277888765
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.2e-06 Score=69.07 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..-++||+|+.||||||+.+.|+..+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-06 Score=78.64 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=42.5
Q ss_pred EccceeEccccccccccccc-cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee
Q 021380 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~-is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~ 142 (313)
.+++.+.|++.. ++ ++|+.+ |.+++++|+||+||||++..|++.+. +..|+|.
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~ 130 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVG 130 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEE
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEE
Confidence 456777786532 46 888877 99999999999999999999999997 6555544
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3e-06 Score=70.60 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999985
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.8e-06 Score=67.82 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.6
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.++++.+| +.+|+|||||||||++..|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344455544 89999999999999999998665
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.5e-06 Score=78.29 Aligned_cols=40 Identities=33% Similarity=0.426 Sum_probs=34.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.++.+++|+|++|||||||++.|+|.+. +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEEEeec
Confidence 3578999999999999999999999998 888887664443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-06 Score=71.47 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.6e-06 Score=73.05 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
+.+.+|.+++|+|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 4578899999999999999999999999996 5666
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.4e-06 Score=80.28 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=44.2
Q ss_pred ccceeEccccccccccccccceeecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCce
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (313)
++++..||... +++.++..+..|++ +.|.||+|+||||+++++++.+. +..+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~~ 76 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNYS 76 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCcc
Confidence 44555666655 88999999999998 99999999999999999999986 55543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.3e-05 Score=64.30 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++.|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998874
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.7e-06 Score=71.08 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=29.5
Q ss_pred ccccc-ceeecCCeEEEEECCCCCCHHHHHHHH-HHHhc
Q 021380 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRIN 132 (313)
Q Consensus 96 iL~~i-s~~i~~Geiv~IiGpNGsGKSTLlk~L-~Gll~ 132 (313)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56665 667899999999999999999996555 44443
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.9e-06 Score=68.09 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.4
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+...+|.+++|+|++||||||+++.|++.+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34557899999999999999999999999987
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.7e-06 Score=78.29 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=39.4
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHH--HhcccCCCCceee
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSF 142 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G--ll~~~~p~~G~i~ 142 (313)
++++.+.|+... ...+|++++++++ .|+|+|++|||||||++.|+| +++ ...|.+.
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp---~~~~~vT 68 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP---RGSGIVT 68 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC---CCSSSCC
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC---CCCCccc
Confidence 466777776421 1228999999998 999999999999999999999 555 5666554
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=66.90 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999987
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.77 E-value=8.7e-06 Score=77.59 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=37.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|+++|+ +.|++.. .+++.+|++++|+||||||||||+++|.+++.
T Consensus 7 l~~~~~-~~~~~~~---------~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 7 LELSNF-KSYRGVT---------KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEESC-SSCCSEE---------EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEeCE-EEECCce---------eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 778898 7886432 24467799999999999999999999999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.4e-06 Score=80.47 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=32.5
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+++++|++.+| +.+|+|+||||||||+..|..++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 678899999999 99999999999999999998884
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.2e-06 Score=78.15 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.+.++++.|+.+. ++++++|+| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 588999999998877 889998887 9999999999999999987643
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.6e-05 Score=65.84 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.4
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++++.+ .+.+|+|||||||||++..|.-.+-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34455554 5999999999999999999987664
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00092 Score=57.45 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=49.1
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
..+++.|-|+++=. ..+..+++.+|+|+-+.+...+|+..|. |.+.+.+..++.. ..+.++ ....||+
T Consensus 112 ~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~~-Q~~~ee----k~~~AD~ 179 (210)
T 4i1u_A 112 GPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIAR-QATREA----RLAAADD 179 (210)
T ss_dssp SSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHH-SCCHHH----HHHTCSE
T ss_pred CCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHHH-cCChHH----HHHhCCE
Confidence 34577787765421 2345678899999999999888888665 5555655554443 334433 3478999
Q ss_pred EeccC
Q 021380 307 VIKSI 311 (313)
Q Consensus 307 i~~~~ 311 (313)
||+|+
T Consensus 180 VIdN~ 184 (210)
T 4i1u_A 180 VIVND 184 (210)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.1e-05 Score=66.89 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=26.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+|.+++|+||+|||||||++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999998773
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.9e-05 Score=73.76 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=44.4
Q ss_pred cCCCCCccCCCcch------hhhhcccC-ccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHH
Q 021380 205 YAPSFDHGVGDPVE------DDILVGLQ-HKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDT 263 (313)
Q Consensus 205 ~~~~LSgGekqRv~------la~al~~~-a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~ 263 (313)
++..|||||+||++ +|+++... +.++++|+|+..||+... +.|.++.. .++++|||++.
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 34589999999985 45677778 999999999999999444 44444322 36799999863
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.8e-05 Score=71.49 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
-+++|+++.|.||||||||||+..++.... +..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeE
Confidence 478999999999999999999999999986 555544
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.55 E-value=4.7e-05 Score=63.34 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999998764
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=5.6e-05 Score=65.85 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-.+|.+++|+|++||||||+++.|++.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999999774
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.52 E-value=6.1e-05 Score=69.57 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666666799999999999999999999999988764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.51 E-value=4.2e-05 Score=63.06 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=2.1e-05 Score=66.49 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=29.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 578999999999999999976
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.48 E-value=4e-05 Score=69.58 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.+++|+|++|+|||||++.|.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 455689999999999999999999864
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=5.6e-05 Score=63.29 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=21.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788899988776 7899999999999999999883
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.2e-05 Score=71.41 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH-----------hcccCCCCceeeeCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR-----------INKIWPQKASSFDSQ 145 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl-----------l~~~~p~~G~i~~~~ 145 (313)
.+..|..++|+|+||+|||||++.|+|. +. |..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~---p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID---PNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C---CSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC---ceeEEEEECC
Confidence 4567889999999999999999999997 44 7778777654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00016 Score=66.00 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=31.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|+++.--+.+|+++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577777679999999999999999999998888665
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.43 E-value=5.6e-05 Score=66.66 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+.+ ...++.++.|+|++||||||+.+.|+..+.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444444 677889999999999999999999999874
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.8e-05 Score=60.58 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999999875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.41 E-value=8.5e-05 Score=65.31 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=26.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.++++.+++| +.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666666 88999999999999999999885
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.40 E-value=8.8e-05 Score=61.97 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999885
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=9.9e-05 Score=74.27 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=31.6
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
|+++.++..++|+|+||+|||||++.|++..... +..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee
Confidence 4567899999999999999999999999887511 367777
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=9.1e-05 Score=60.35 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=59.76 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999999874
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=63.72 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999999875
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=59.89 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999998764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=68.95 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
++.+++++|+|||||||++..|++.+. +..++|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeE
Confidence 589999999999999999999999997 554444
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=67.17 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999988887664
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=61.44 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
++-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=59.61 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998774
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00024 Score=66.55 Aligned_cols=36 Identities=25% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~ 144 (313)
.+.-++|+|++|||||||++.|++.+. +..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEEE
Confidence 566789999999999999999999887 777777654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00016 Score=59.71 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999885
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=60.16 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999885
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.22 E-value=5.1e-05 Score=73.30 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=37.0
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++++...|.... .++++++.+++| +.|+||+|+|||||++.|++...
T Consensus 28 l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 28 LKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 344444454444 678888888888 78999999999999999999875
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=68.61 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999975
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=67.49 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+++..+++.+ .+.+|+|+|||||||++..|.=
T Consensus 15 ~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 15 SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 34556667666 4899999999999999999975
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=59.69 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0002 Score=59.25 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++.++.|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34677899999999999999999998774
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0001 Score=66.36 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=26.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCce
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (313)
..+.|.||+|+||||+++.|++.+. +..|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~---~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF---DTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH---SCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc---CCCcc
Confidence 6899999999999999999999997 55554
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=8.7e-05 Score=63.04 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999985
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00032 Score=59.15 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999999885
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00028 Score=59.22 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=41.7
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
.++++.|++++.-+. +....+.+++++-+.+...+|+..|. |...+.+...+.. ..+.. +....||+
T Consensus 106 ~~~vi~d~~~l~~~~-----~~~~~d~~i~l~~~~e~~~~R~~~R~---~~~~~~~~~~i~~-~~~~~----~~~~~ad~ 172 (203)
T 1uf9_A 106 APLVFLEIPLLFEKG-----WEGRLHGTLLVAAPLEERVRRVMARS---GLSREEVLARERA-QMPEE----EKRKRATW 172 (203)
T ss_dssp CSEEEEECTTTTTTT-----CGGGSSEEEEECCCHHHHHHHHHTTT---CCTTHHHHHHHTT-SCCHH----HHHHHCSE
T ss_pred CCEEEEEecceeccC-----chhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-CCChh----HHHHhCCE
Confidence 578888887655431 22345667899999998888877552 3233333333332 22222 22344788
Q ss_pred EeccC
Q 021380 307 VIKSI 311 (313)
Q Consensus 307 i~~~~ 311 (313)
+|++.
T Consensus 173 vId~~ 177 (203)
T 1uf9_A 173 VLENT 177 (203)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 88765
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=58.65 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=25.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998774
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00033 Score=58.20 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988774
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00015 Score=60.64 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=26.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445678999999999999999999998874
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0003 Score=59.20 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998865
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=59.15 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|++||||||+.+.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999874
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=58.23 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999999885
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00056 Score=63.08 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999999874
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00035 Score=59.10 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+|.+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0002 Score=59.34 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=57.61 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~G 129 (313)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00034 Score=59.03 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998776
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00039 Score=62.61 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=25.1
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
...|.++.|+||+||||||+.+.|+..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999998866
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00041 Score=58.76 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998774
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00037 Score=62.93 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.1
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34567888999999999999999999999874
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0003 Score=58.07 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567999999999999999999988764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00056 Score=58.53 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998875
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00035 Score=65.13 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=27.2
Q ss_pred CeE-EEEECCCCCCHHHHHHHHHHHhccc--------CCCCceeeeCC
Q 021380 107 KHI-VGLAGPPGAGKSTLAAEVVRRINKI--------WPQKASSFDSQ 145 (313)
Q Consensus 107 Gei-v~IiGpNGsGKSTLlk~L~Gll~~~--------~p~~G~i~~~~ 145 (313)
|-. ++|+|++|||||||++.|+|..... -+..|.+.++|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g 225 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN 225 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC
Confidence 444 9999999999999999999875300 03456676665
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00049 Score=57.06 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|.|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999885
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00039 Score=60.33 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-.++|+|++|+|||||++.|+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3689999999999999999999765
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00072 Score=56.94 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=24.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+.+++|+|+.||||||+.+.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998774
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00076 Score=62.76 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=28.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc--------ccCCCCceeeeCC
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN--------KIWPQKASSFDSQ 145 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~--------~~~p~~G~i~~~~ 145 (313)
|..++|+|.+|+|||||++.|+|--. ...|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999999320 0115667666644
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00063 Score=58.56 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999998764
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00078 Score=56.70 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+++|.|+.||||||+.+.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999987764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00048 Score=61.15 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00076 Score=57.35 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988774
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00083 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-++++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998875
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00078 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0009 Score=55.40 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998774
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0007 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00065 Score=56.27 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998875
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0007 Score=58.02 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998874
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00094 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998774
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0011 Score=58.49 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998763
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00091 Score=56.93 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0019 Score=59.10 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0012 Score=57.72 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++-+++|.||.||||||+.+.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998774
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0019 Score=58.90 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987663
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00064 Score=65.26 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++.+ +.+.+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 55555 6778999999999999999999999998875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0017 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999885
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00082 Score=58.27 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.+..|+.++|+||+||||||++..+...
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4567999999999999999998877543
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998853
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0034 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999998764
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0017 Score=56.06 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=27.2
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-.+.+..++.|+||.||||+|..+.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456778999999999999999999998875
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998774
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0027 Score=58.44 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 467899999999999999999998664
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=60.01 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999863
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998874
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0016 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0018 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999885
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0045 Score=59.01 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666665689999999999999999999998888764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0017 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998864
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=59.03 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999853
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=23.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455689999999999999999998743
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0017 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998854
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0019 Score=59.54 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCe--EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Ge--iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999986
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=60.00 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999886
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00076 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0023 Score=54.98 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+|.++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999885
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=55.32 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0018 Score=56.31 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999885
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0018 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999998764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999886
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0027 Score=57.90 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999998764
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0045 Score=58.25 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998874
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0024 Score=55.15 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.++.|+|+.||||||+.+.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999998875
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0025 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999774
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0022 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=52.31 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0013 Score=59.85 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=26.6
Q ss_pred ccccceeecCC--eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 97 TSALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~is~~i~~G--eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+...+..| ..+.|.||+|+||||+++.|++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33333334444 3389999999999999999999874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0023 Score=57.10 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.-+.|.||+|+|||||++.|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999874
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0022 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.|.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999999863
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=55.86 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999885
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0012 Score=53.03 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999997644
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0016 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
--.++|+|+.|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0023 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0016 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0025 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0046 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
--+++|+|+.|+|||||++.|++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0025 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|.+-.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0032 Score=53.60 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.5
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++..-+.+ .|..+.|+||+|+|||||...|+..
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 455544454 5788999999999999999888653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0015 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999877664
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998753
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0015 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
...-.++|+|+||+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=51.69 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0027 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0016 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0029 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.++.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999885
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0035 Score=51.10 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999875
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=58.65 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+++..+++ .|.-++|.|++|+|||||+..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 677877777 688999999999999999998877
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0025 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 368999999999999999998643
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0018 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=54.91 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.+++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998874
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.003 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0029 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998865
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=56.92 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999998743
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0029 Score=56.02 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35566799999999999999999999875
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=59.32 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0038 Score=54.05 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999885
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0027 Score=52.21 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0027 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.003 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0031 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0035 Score=53.99 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=26.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999986
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0036 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0032 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998854
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0024 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0032 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999854
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0047 Score=58.87 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999886
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0035 Score=53.51 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|+||.||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=57.50 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345789999999999999999999885
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0031 Score=52.34 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|..|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0034 Score=52.40 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 69999999999999999999853
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0034 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0032 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 47999999999999999999884
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0031 Score=59.68 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.4
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.-..+.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 444567899999999999999999987655
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=57.45 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+|+|+|..|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999853
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0024 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3556899999999999999998874
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0016 Score=57.29 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=26.9
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++.+...+| +.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 34444555566 77999999999999999999875
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0034 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0034 Score=51.97 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999999865
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34579999999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0039 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.003 Score=53.14 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.7
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.|.-...-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4444444444579999999999999999998843
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0027 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.|+|+|+.|+|||||++.|.|.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0039 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0036 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999988754
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.004 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999998753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0041 Score=51.54 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999998853
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0031 Score=60.06 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=26.1
Q ss_pred eeecCC--eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 ~~i~~G--eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444433 5999999999999999999999885
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=55.49 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|+|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0045 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998753
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.+.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0042 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998854
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0043 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0021 Score=53.81 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|++|+|||||++.++|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999764
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0051 Score=57.03 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=26.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+++|.++.|.|++|+|||||+..++....
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988887653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=52.03 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0046 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
..-.++|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0049 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 478999999999999999888753
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0045 Score=50.43 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999999875
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0043 Score=52.41 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.004 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0062 Score=52.97 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....-+.|.||.|+|||||++.|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345588999999999999999999875
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0036 Score=55.65 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|..|+|||||++.|+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0023 Score=56.36 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.+|+|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0051 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0046 Score=58.94 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999884
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0064 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999885
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0038 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|+|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999863
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0049 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999853
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0038 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0036 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999874
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0051 Score=55.81 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988865
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0031 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|.+|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=51.26 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998753
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
--+++|+|..|+|||||++.+++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999988763
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0041 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0036 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.002 Score=54.67 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999998853
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0028 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998765
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.005 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.006 Score=50.40 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0036 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=9.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEECCCCC-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999988653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0039 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999998864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0052 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999998854
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0077 Score=52.37 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.-.+||+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998775
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0049 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0051 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 378999999999999999888754
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=54.40 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.-+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998874
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0068 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 68999999999999999998743
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0094 Score=49.76 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLl-k~L~Gll 131 (313)
+|.++.|.||.|+||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 4444443
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0057 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|..|+|||||++.|.|.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999854
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.012 Score=50.56 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~ 128 (313)
-+++|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999999986554
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0084 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0075 Score=50.61 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998864
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0055 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|..|+|||||++.|+|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0064 Score=51.92 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|.+|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0055 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+.-.++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998864
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0064 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++++|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0089 Score=50.66 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0065 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0037 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=5.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999998876
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0091 Score=50.11 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.011 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999998763
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0034 Score=60.00 Aligned_cols=33 Identities=42% Similarity=0.702 Sum_probs=26.3
Q ss_pred cceeecCCeE--EEEECCCCCCHHHHHHHHHHHhc
Q 021380 100 LASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-.+..|.+ +.|.||+|+|||||++.|+..+.
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344445554 89999999999999999999875
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.011 Score=49.25 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=24.2
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
++..-+.+ .|.-+.|.|++|+|||||...|..
T Consensus 7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34333333 478899999999999999887754
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=52.60 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+.-+.|.||.|+|||||++.|+..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999999884
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.011 Score=47.03 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
..+.-+.|.||.|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345568899999999999999998765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0093 Score=54.64 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999874
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0034 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.012 Score=52.69 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+....+.|.||.|+|||+|++.|+..+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445678889999999999999999875
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=54.81 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.0
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.=+.|.+|+..+|+|+.|+|||||+..|+....
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 4446789999999999999999999999988764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0082 Score=61.30 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=41.0
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCccc-ccCh----hhHHHHHHhhcC--eE-E-EEcChHHHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDG----GVWKDVSSMFDE--KW-F-IEVDLDTAMQ 266 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l-lLDE----~~~~~l~~l~~~--~i-~-vtHd~~~~~~ 266 (313)
..+..++.|+.+|..++..++.+.+++++||... .+|. ..+..+...... +| + +|||.+.+..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 3455778999999888777788888899999875 6664 233333333322 23 4 4898765543
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=50.32 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++.-.+.|.||.|+||||++..|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666799999999999999999999884
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0065 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|+|+|.+|+|||||++.|+|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998853
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.016 Score=57.04 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..|.++.|.|.+||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3577999999999999999999998874
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.015 Score=56.38 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999995
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.016 Score=57.56 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+|.+|.|+|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.017 Score=52.57 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.-+.|.||.|+|||||++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 445678899999999999999999987
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 45579999999999999999999864
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.017 Score=53.78 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=25.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+++|.++.|.|++|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999998777654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.011 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998854
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.041 Score=47.76 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+.-++.++|..|+|||||+..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999877
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.035 Score=52.74 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998885
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.017 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-+.|.||.|+|||||++.|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999885
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.84 E-value=0.011 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHH-HHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAE-VVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~-L~Gll 131 (313)
-.++|+|+.|+|||||++. +.|..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3689999999999999998 66664
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.011 Score=56.67 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..|-.++|+|+.|+|||||++.|+|...
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 4566799999999999999999999753
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.02 Score=55.52 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+++|+|++|+|||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998775
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.014 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998775
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.016 Score=53.31 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345688999999999999999999874
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.021 Score=50.24 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....-+.|.||.|+|||||++.|+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455788999999999999999999864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.019 Score=52.56 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999985
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.021 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..+.|.||.|+|||||++.++..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 55899999999999999999998874
|
| >2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... | Back alignment and structure |
|---|
Probab=94.65 E-value=0.027 Score=53.99 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=28.8
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.=+.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 146 ~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~ 178 (482)
T 2ck3_D 146 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 178 (482)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cccccccCCeeeeecCCCCChHHHHHHHHHhhH
Confidence 345789999999999999999999999988753
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.018 Score=52.55 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
--+.+|.++.|.||.|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35778888999999999999999998764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.0058 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 347899999999999999888753
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.014 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|.+++|||||++.|+|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.024 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.-+.|.||.|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.024 Score=54.30 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....++.++|.+||||||+.+.|+..+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987753
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.024 Score=55.11 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=24.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....+|.++|.+||||||+.+.|+..+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999988764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.023 Score=52.31 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....-+.|.||.|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556799999999999999999998764
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.0053 Score=55.70 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=28.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++.+...+..|.-+.|.||.|+|||||++.|+..+.
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444445567899999999999999999999875
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.025 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+|=|+-||||||.++.|...+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999999999999885
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.023 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+|+|.|+.||||||+.+.|+..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999885
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.50 E-value=0.027 Score=51.05 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..-+.|.||.|+|||||++.|+..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 445689999999999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 313 | ||||
| d1sq5a_ | 308 | c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi | 2e-24 | |
| d1a7ja_ | 288 | c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph | 1e-19 | |
| d1uj2a_ | 213 | c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho | 2e-19 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 4e-15 | |
| d1odfa_ | 286 | c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker' | 4e-13 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 6e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 1e-04 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 1e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 2e-04 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 8e-04 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 8e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 0.002 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 0.004 |
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Score = 98.6 bits (245), Expect = 2e-24
Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 44/229 (19%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
I+ +AG GKST A + +++ + V ++ DGF L
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQH 227
+ ++G P +++ L+ + +L++ +V AP + H + D + D +Q
Sbjct: 130 E----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 185
Query: 228 KVVIVDGNYLFLDGGVWKD------VSSMFDEKWFIEVDLDTAMQRVLKRHIST--GKPP 279
++I++G + G + VS D +++ D + R + G
Sbjct: 186 DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFT 245
Query: 280 DVAKWRIEYND------------------RPNAEL-IMKSKKNADLVIK 309
D + Y N + I+ +++ A L++
Sbjct: 246 DPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILT 294
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 84.6 bits (209), Expect = 1e-19
Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 33/223 (14%)
Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
KH I+ + G GAG ST+ ++I+ ++ A + D FH +
Sbjct: 2 KKHPIISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFN 47
Query: 165 -SQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
+ + A D + A + L + G ++ H +
Sbjct: 48 RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 107
Query: 220 DILVGLQ---------HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 270
+ G ++ +G + + +++ + D K + ++ + +
Sbjct: 108 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLKIGVVPVINLEWIQKIH 166
Query: 271 RHIST-GKPPDVAKWRIEYNDRPNAEL-IMKSKKNADLVIKSI 311
R +T G + I I+ D+ + +
Sbjct: 167 RDRATRGYTTEAVTDVIL-RRMHAYVHCIVPQFSQTDINFQRV 208
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.1 bits (204), Expect = 2e-19
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
++G++G +GKS++ A++V+ + + +L D F+ L+
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54
Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
+ K P F+ L+L LK + +V P +D E+ + V
Sbjct: 55 KAKALKGQFN-FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 112
Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIE 287
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 113 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYI 168
Query: 288 YNDRPNAEL-IMKSKKNADLVIKS 310
+P E + +KK AD++I
Sbjct: 169 TFVKPAFEEFCLPTKKYADVIIPR 192
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 70.6 bits (171), Expect = 4e-15
Identities = 29/226 (12%), Positives = 67/226 (29%), Gaps = 31/226 (13%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
+ + D L + +L A + ++G+ G +GK+TLA ++ + + +
Sbjct: 3 LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV---- 53
Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
V MD + ++ + + L + L+
Sbjct: 54 ----------CVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVE--WLTHQLFRQLKASH 101
Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262
+ P +DH + + + ++I K+ FD +++ +
Sbjct: 102 QLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQ------RKEWRPFFDFVVYLDCPRE 155
Query: 263 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308
R + + R + K AD+V
Sbjct: 156 IRFARENDQV---KQNIQKFINRYW-KAEDYYLETEEPIKRADVVF 197
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (160), Expect = 4e-13
Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 30/239 (12%)
Query: 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
+D + L + + + + +GP G+GKS + ++ + + + + S
Sbjct: 4 VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS- 60
Query: 142 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNL 198
+D F+L + + + + RG P T + LL L +
Sbjct: 61 ----------IGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 110
Query: 199 RNQGS----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF----LDGGVW 244
N Y S G GD + L + I++G +L L G
Sbjct: 111 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIEN 170
Query: 245 KDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKN 303
D+ + ++ + + S G Y R E + SK
Sbjct: 171 NDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVG 229
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 41.8 bits (97), Expect = 6e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
R I + E+R + A + L+ A+ VG+ G PG GKST + +
Sbjct: 21 RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76
Query: 133 KIWPQKASS 141
+ A
Sbjct: 77 AAGHKVAVL 85
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 21/202 (10%), Positives = 41/202 (20%), Gaps = 46/202 (22%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
++ L G AGKS + + + P+ +F + + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58
Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
+ E A GA + + + D
Sbjct: 59 DGGVSIGPEFRALEGAWAEGVVAMARAGARII----------IDDVFLGGAAAQERW--- 105
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 286
D V + D A R R + +A +
Sbjct: 106 --------RSFVGDLDVLWV---------GVRCDGAVAEGRETAR---GDRVAGMAAKQA 145
Query: 287 EYNDRPNAELIMKSKKNADLVI 308
D+ +
Sbjct: 146 YVVHEG---------VEYDVEV 158
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
+ + +VE+R + AL+ +LL A+ +G+ G PGAGKST +
Sbjct: 24 QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79
Query: 133 KIW 135
+
Sbjct: 80 REG 82
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
HI L G G+GKS +A+EV +++ +
Sbjct: 7 HIYVLMGVSGSGKSAVASEVAHQLHAAF 34
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
K + + GP G GKST + +++
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 37.0 bits (84), Expect = 8e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
K I+ G PG+GKST A E + + +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.002
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
++ A G GK+TL +++ +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCA 28
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 37.0 bits (84), Expect = 0.002
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 82 CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140
+ALA+ L + A +V I G G G GK+TLA V+R+++ K
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEG 78
Query: 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
Q L + Q + A A
Sbjct: 79 LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALD 118
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.7 bits (81), Expect = 0.004
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
++ + G P GK+ ++ ++ R +N I
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFI 29
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 313 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 99.65 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 99.55 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 99.49 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.26 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 98.95 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 98.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.88 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.87 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.86 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.84 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.73 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.72 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.71 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.68 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.65 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.65 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.61 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.54 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.53 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.52 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.52 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.49 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.48 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.45 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.43 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.41 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.41 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.4 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.36 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.35 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.32 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.32 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.31 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.27 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.27 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.26 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.25 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.25 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.15 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.14 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.12 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.12 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.1 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.1 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.07 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.05 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.04 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.02 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.02 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.99 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.99 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.98 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.96 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.95 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.95 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.95 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.94 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.94 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.93 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.89 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.86 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.86 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.83 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.82 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.81 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.81 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.8 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.77 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.76 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.75 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.74 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.74 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.71 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.67 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.58 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.57 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.56 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.53 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.51 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.51 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.48 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.47 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.44 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.42 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.41 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.37 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.37 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.35 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.33 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.29 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.28 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.27 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.19 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.19 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.18 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.17 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.16 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.15 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.13 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.13 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.08 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.01 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.01 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.99 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.99 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.93 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.93 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.92 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.89 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.88 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.86 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.86 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.85 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.84 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.83 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.82 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.81 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.81 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.78 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.77 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.76 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.76 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.73 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.72 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.7 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.67 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.65 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.65 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.62 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.57 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.55 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.53 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.52 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.51 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.51 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.49 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.47 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.46 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.46 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.43 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.43 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.38 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.36 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.32 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.31 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.3 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.27 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.22 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.18 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.17 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.17 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.15 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.09 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.08 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.07 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.01 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.0 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.85 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.85 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.81 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.8 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 94.79 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.75 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.75 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.65 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.63 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.59 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.47 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.3 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.25 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.17 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.96 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.93 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.92 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.92 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.9 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.86 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.78 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.64 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.61 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.6 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.09 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.0 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.95 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.54 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.49 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 92.46 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.29 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.18 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 92.07 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 92.07 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.99 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.64 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 91.58 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.52 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.27 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 91.15 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.1 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.75 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.54 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.28 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.7 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 89.54 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 89.38 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.37 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.23 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 88.72 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.56 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 88.56 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.54 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 88.01 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 87.87 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.75 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.69 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 87.42 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.78 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 86.67 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 86.39 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 86.05 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 85.91 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.81 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 85.44 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.05 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 83.48 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.82 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 80.78 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-47 Score=336.76 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=139.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCe
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 151 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~ 151 (313)
|+++||+|+|++.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+. .+.
T Consensus 1 Iev~nv~k~yg~~~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~ 73 (232)
T d2awna2 1 VQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG 73 (232)
T ss_dssp EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence 68999999999887 9999999999999999999999999999999999999 9999999999763 345
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
+||+||++..++ .+|++||+.++...++.+.....+++.++++.++ ...++++.+|||||||||+||+|++.++++
T Consensus 74 ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~i 151 (232)
T d2awna2 74 VGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 151 (232)
T ss_dssp EEEECSSCCC-----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSE
T ss_pred eeeecccccccc--chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999964333 5999999999988888777777788999999998 445778889999999999999999999999
Q ss_pred EEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 230 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 230 li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
|++|+|+..||+ .+++.|.++.++ +|+||||++++.. |++ |++++.|++.++..+
T Consensus 152 lllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 152 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999 455555555432 4799999999988 665 999999999998653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.8e-48 Score=339.49 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=175.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|+.|+++||+|.||+.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~i~v~nl~k~yg~~~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (240)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCcEEEEeEEEEECCEE----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence 67899999999999887 9999999999999999999999999999999999999 9999999998641
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|++.. + +.+||.||+.++...++.+.....+++.++++.++ ...++++.+|||||||||+||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L-~-~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYAL-Y-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp EECCGGGSSEEEECSCCCC-C-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred hhcccccccceecccchhh-c-chhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 3469999999643 3 35999999999999888776666778899999998 445778889999999999999
Q ss_pred hhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
+|++.+|++|++|+|+..||+ .+++.+.++.++ +|+||||++++.. |++ |++++.|+++++...
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999 455555555332 5799999999987 655 999999999998653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.9e-48 Score=338.99 Aligned_cols=200 Identities=14% Similarity=0.167 Sum_probs=169.5
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|..|+++||+|+||+.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 4 M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 4 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred cCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence 56699999999999887 9999999999999999999999999999999999999 9999999999753
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.+||+||++.. + +.+||.||+.++...++.++....+++.++++.++ ...++++.+|||||||||+||+|++.+
T Consensus 77 ~r~ig~v~Q~~~l-~-~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 77 DRNISMVFQSYAV-W-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred cceEEEEeechhh-c-ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccC
Confidence 2459999999643 3 35999999999877777776666778889999998 446788899999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||+ .+++.+.++.++ +|+||||++++.+ |++ |++++.|+++++..
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 455556555432 5799999999987 665 99999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.4e-47 Score=334.80 Aligned_cols=202 Identities=15% Similarity=0.142 Sum_probs=171.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|..|+++||+|.|++. .+.+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (242)
T ss_dssp CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence 5679999999999532 1238999999999999999999999999999999999999 9999999998651
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~ 221 (313)
++.+||+||++. ++ +.+||+||+.++...++.+.....+++.++++.++ ...++++.+|||||||||+||+
T Consensus 76 ~~~~~rr~ig~vfQ~~~-L~-p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiAR 153 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWA-LY-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (242)
T ss_dssp SSCGGGSCEEEEETTSC-CC-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred hcchhhccceEEecccc-cc-ccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHh
Confidence 346999999964 33 35899999999888777776666778899999998 4467888899999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++.+|++|++|+|+..||+ .+++.+.++.++ +|+||||++++.+ |++ |++++.|+++++..
T Consensus 154 aL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999 455555555332 5799999999987 655 99999999999865
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.9e-47 Score=332.02 Aligned_cols=202 Identities=16% Similarity=0.146 Sum_probs=174.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||+|.|+.....+.+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|++..
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL 77 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence 58999999999865434458999999999999999999999999999999999999 99999999997621
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhc
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al 223 (313)
+.+|||||++. ++ +.+||+||+.++....+.+.....+++.++|+.++ ...++++.+|||||||||+||+|+
T Consensus 78 ~~~rr~ig~VfQ~~~-l~-~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL 155 (240)
T d3dhwc1 78 TKARRQIGMIFQHFN-LL-SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (240)
T ss_dssp HHHHHHEEECCSSCC-CC-TTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHH
T ss_pred hhhhccccccccccc-cC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhh
Confidence 35999999964 33 35899999999998888887777788999999998 446778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.+|++|++|+|+..||+ .+++.|.++.++ +|+||||++++.. |++ |++++.|+++++..
T Consensus 156 ~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred ccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999 455555555432 4799999999987 655 99999999998753
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.7e-45 Score=321.68 Aligned_cols=194 Identities=14% Similarity=0.172 Sum_probs=166.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------D 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------~ 150 (313)
||+++||+|+|++ . +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.. +
T Consensus 1 mi~v~nlsk~y~~-~----aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 1 MIEIESLSRKWKN-F----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp CEEEEEEEEECSS-C----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEeCC-E----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence 5899999999986 3 8999999999999999999999999999999999999 99999999997643 3
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+||+||++..+ +++||.||+.++...++.. ..+++.++++.++. ..++++.+|||||||||+||+|++.+|+
T Consensus 73 ~ig~v~Q~~~l~--~~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 73 DIAFVYQNYSLF--PHMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp TCEEECTTCCCC--TTSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cceeeccccccC--ccccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCC
Confidence 599999996433 3599999999998877654 35678888998883 4677888999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+|++|+|+..||+ ++++.+.++.++ +|+||||++++.. |++ |++++.|+++++..
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred ceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999 455555555332 5799999999987 655 99999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-44 Score=322.19 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=168.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+|+||+.. +|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 2 ~Lev~nl~k~yg~~~----al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~ 74 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 74 (258)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEEEEEEEECCEE----EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence 599999999999887 9999999999999999999999999999999999999 99999999997531
Q ss_pred --------------CeEEEEeccCCCCCcccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCc
Q 021380 150 --------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (313)
Q Consensus 150 --------------~~i~~v~q~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSg 211 (313)
+.+||+||++.. + +.+|+.+|+.+.. ...+.+.....+++.++++.++.. .++++.+|||
T Consensus 75 ~~~~~~~~~~~~~r~~ig~vfQ~~~l-~-~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSG 152 (258)
T d1b0ua_ 75 QLKVADKNQLRLLRTRLTMVFQHFNL-W-SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 152 (258)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCC-C-TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred hcccccHhHHHHHhcceEEEEechhh-c-cchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccH
Confidence 349999999643 3 3589999999864 445555455566788899998853 3566789999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
||+|||+||++++.++++|++|+|+..||. ++++.|+++.++ +|+||||++++.. |++ |++++.|+
T Consensus 153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999 455555555433 5799999999987 665 99999999
Q ss_pred hhHHHHH
Q 021380 278 PPDVAKW 284 (313)
Q Consensus 278 ~~e~~~~ 284 (313)
++++...
T Consensus 233 ~~ev~~~ 239 (258)
T d1b0ua_ 233 PEQVFGN 239 (258)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.7e-44 Score=312.67 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=159.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||+|.|+.....+.+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence 58999999999865444558999999999999999999999999999999999999 99999999997532
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC---CccHHHHHHHHHHhhc---CCCccCCCCCccCCCcch
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~l~~l~~---~~~~~~~~LSgGekqRv~ 218 (313)
+.+||+||++..++ .+||.||+.++......+. ....+++.++|+.++. ..+.++.+|||||||||+
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRva 155 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (230)
T ss_dssp HHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred chhhcceEEEEecchhhCc--CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHH
Confidence 24999999964333 5899999999877654332 2234456777777774 246678899999999999
Q ss_pred hhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC----eEEEEcChHHHHH--HHH----hhhhccCCh
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKP 278 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~----~i~vtHd~~~~~~--rvi----gr~v~~G~~ 278 (313)
||+|++.++++|++|+|+..||+ .+++.|.++.++ +|+||||++++.. |++ |+++++|++
T Consensus 156 IAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999 556666665432 4799999997632 554 787777653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.4e-43 Score=310.75 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=162.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
.+|+++||+|+||+.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~ 77 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred eEEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHH
Confidence 3899999999999887 9999999999999999999999999999999999999 99999999997632
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHh---hcCCCccCCCCCccCCCcchhhhhc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~LSgGekqRv~la~al 223 (313)
..++|++|+...++ .+|+.+|+.+....+. ......+.+..+++.+ ....++++.+|||||||||+||+|+
T Consensus 78 ~~r~gi~~~~q~~~l~~--~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 78 INRMGIALVPEGRRIFP--ELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCT--TSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHhcccccCcccccCC--cccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 13889999864333 5899999877654332 2222333444555543 3567888899999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.+|++|++|+|+..||+ ++++.|+++.+. ++++|||++++.+ |++ ||+++.|+++++..
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999 556666665443 5799999999987 555 99999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-43 Score=316.05 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=166.6
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
.|.+|+++||+|+||+.. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 tM~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~ 73 (254)
T d1g6ha_ 1 TMEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEP 73 (254)
T ss_dssp CCEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCH
T ss_pred CcceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhH
Confidence 378999999999999887 9999999999999999999999999999999999999 99999999997632
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhc------------CCCC-CccHHHHHHHHHHhh--cCCCccCCCC
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR------------GAPW-TFNPLLLLNCLKNLR--NQGSVYAPSF 209 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~------------~~~~-~~~~~~~~~~l~~l~--~~~~~~~~~L 209 (313)
..++|+||++..++ .+|+.||+.++.... .... ....+++.++++.++ ...++++.+|
T Consensus 74 ~~~~~~gi~~v~Q~~~~~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 151 (254)
T d1g6ha_ 74 AELYHYGIVRTFQTPQPLK--EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 151 (254)
T ss_dssp HHHHHHTEEECCCCCGGGG--GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHHHhcCCccCCccccCC--CCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhC
Confidence 13899999975333 589999998753211 1111 122345677888777 3456788899
Q ss_pred CccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhcc
Q 021380 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIST 275 (313)
Q Consensus 210 SgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~ 275 (313)
||||||||+||++++.+|++|++|+|+..||+ .+++.|.++.+. +++||||++++.+ |++ |++++.
T Consensus 152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~ 231 (254)
T d1g6ha_ 152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 231 (254)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999999999999999999999 455555555443 4799999999877 665 999999
Q ss_pred CChhHHHHHH
Q 021380 276 GKPPDVAKWR 285 (313)
Q Consensus 276 G~~~e~~~~~ 285 (313)
|+++|+....
T Consensus 232 g~~~e~~~~~ 241 (254)
T d1g6ha_ 232 GRGEEEIKNV 241 (254)
T ss_dssp EESHHHHHHH
T ss_pred ecHHHHhhcc
Confidence 9999876653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.9e-43 Score=309.14 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=169.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------~ 149 (313)
.|+++||+|+||++. +|+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+. +
T Consensus 2 aI~v~nl~k~yg~~~----vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHH
T ss_pred CEEEEeEEEEECCEE----EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHH
Confidence 388999999999988 9999999999999999999999999999999999999 9999999999753 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a 227 (313)
+.++|+||+...++ .+|+.||+.+....++.......+.+..+++.++ ...++++.+||||||||++||++++.+|
T Consensus 75 ~~i~~vpq~~~~~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 75 KLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp TTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred hhEeEeeeccccCC--CccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 45999999964433 5899999999888777655444556677777776 3456788899999999999999999999
Q ss_pred cEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 228 KVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 228 ~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++|++|+|+..||+ .+++.+.++.+. ++++|||++++.. |++ |++++.|+++++...
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999 455555554433 4799999999987 665 999999999998764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.7e-41 Score=296.43 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=159.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------CCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------~~~ 150 (313)
.|++ ++.|+||+.. + ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|.+ ..+
T Consensus 2 ~l~v-~~~k~~g~~~----~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r 70 (240)
T d2onka1 2 FLKV-RAEKRLGNFR----L--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEE-EEEEEETTEE----E--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred EEEE-EEEEEECCEE----E--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHc
Confidence 4778 6799999865 4 8999996 68999999999999999999999999 999999999964 235
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.+||+||++..++ .+||+||+.++.. ........+++.++++.++ ...++++.+|||||||||+||+|++.+|+
T Consensus 71 ~ig~v~Q~~~l~~--~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 71 GIGFVPQDYALFP--HLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCT--TSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred Cceeeccchhhcc--cchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 6999999964333 5999999988643 2333344567889999988 44677888999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+|++|+|+..||. .+++.+.++.. .+|+||||++++.+ |++ |++++.|+++++..
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 9999999999998 45555555543 25799999999987 555 99999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.2e-40 Score=292.99 Aligned_cols=194 Identities=17% Similarity=0.140 Sum_probs=154.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--------~ 148 (313)
||+++||+++|++.. .+|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 1 mle~knvsf~Y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW 74 (242)
T ss_dssp CEEEEEEEECSSSSS---CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred CEEEEEEEEECCCCC---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence 589999999996532 29999999999999999999999999999999999999 999999999964 2
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---------CC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~LSgGekq 215 (313)
++.++|++|+++.+. .|+++|+.+.. ........+.+.++..+.. .+ .....|||||||
T Consensus 75 r~~i~~v~Q~~~lf~---~ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQ 146 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMA---GTIRENLTYGL-----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146 (242)
T ss_dssp TTTCCEECCSSCCCC---EEHHHHTTSCT-----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred HhheEEEccccccCC---cchhhheeccc-----ccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHH
Confidence 356999999975433 48999876532 2222334444444443311 11 123479999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+++.|.++.+. +|+||||++.+.. |++ |++++.|++++++.
T Consensus 147 Rv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 567777766543 5799999998866 665 99999999999886
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 227 ~ 227 (242)
T d1mv5a_ 227 T 227 (242)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-39 Score=289.64 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=152.9
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||+++|++.. ...+|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchhhhHHH
Confidence 499999999997642 2348999999999999999999999999999999999999 9999999999763
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHH---------HHHHHHhhc----CCCccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRN----QGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~---------~~~l~~l~~----~~~~~~~~LSgGekq 215 (313)
++.++|++|+++. ++ .|+.+|+.++.. ........ .+.++.+.. ..+.....|||||||
T Consensus 87 r~~i~~v~Q~~~l-f~--~tv~eni~~g~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQ 158 (251)
T d1jj7a_ 87 HRQVAAVGQEPQV-FG--RSLQENIAYGLT-----QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQ 158 (251)
T ss_dssp HHHEEEECSSCCC-CS--SBHHHHHHCSCS-----SCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHH
T ss_pred HHHhhhccccccc-cC--cchhhhhhhhhc-----ccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHce
Confidence 2459999999754 33 599999876421 11111111 122333321 123455689999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~ 281 (313)
|++||+|++.++++|++|+|+..||.. +++.|.++.+ .+|+||||++.+.. |++ |++++.|+++++
T Consensus 159 RvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eL 238 (251)
T d1jj7a_ 159 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238 (251)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999994 4555554433 25799999998755 665 999999999999
Q ss_pred HHH
Q 021380 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
++.
T Consensus 239 l~~ 241 (251)
T d1jj7a_ 239 MEK 241 (251)
T ss_dssp HHH
T ss_pred HhC
Confidence 765
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-39 Score=283.85 Aligned_cols=193 Identities=15% Similarity=0.155 Sum_probs=151.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~-------- 149 (313)
|+++||+++|++.. ..+|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 2 I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 2 ITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred eEEEEEEEEeCCCC--cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchhhhh
Confidence 78999999995321 238999999999999999999999999999999999999 99999999997643
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCccCCCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgGekqR 216 (313)
+.++|++|+++. +. .|+++|+.+... ....+.+...++..+ .. .......||||||||
T Consensus 77 ~~i~~v~Q~~~l-f~--~Ti~eNi~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QR 147 (241)
T d2pmka1 77 RQVGVVLQDNVL-LN--RSIIDNISLANP------GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 147 (241)
T ss_dssp HHEEEECSSCCC-TT--SBHHHHHCTTST------TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHH
T ss_pred ceEEEEeccccc-CC--ccccccccccCc------cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHH
Confidence 359999999754 33 699999876421 122333333333222 11 123456999999999
Q ss_pred chhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
++||+|++.++++|++|+++.-||. .+++.|.++.+. +|+|||+++.+.. |++ |++++.|+++++...
T Consensus 148 valARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~ 227 (241)
T d2pmka1 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227 (241)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999 455555555442 5799999998755 665 999999999998753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-38 Score=283.48 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=153.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||+++|++.. .++|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 13 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 13 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEEEEeCCCC--CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhh
Confidence 399999999997542 238999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgGekq 215 (313)
+.++|++|+++.+. .|+.+|+.++ .+...+.+.+.+.++..+ .+ .......|||||||
T Consensus 88 r~~i~~v~Q~~~l~~---~ti~~n~~~~-----~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQ 159 (253)
T d3b60a1 88 RNQVALVSQNVHLFN---DTVANNIAYA-----RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 159 (253)
T ss_dssp HHTEEEECSSCCCCS---SBHHHHHHTT-----TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred hheEEEEeeccccCC---cchhhhhhhc-----CcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHH
Confidence 35999999975443 5888887653 222333444444333222 11 22345689999999
Q ss_pred cchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.++++|++|+|+..||. .+++.|.++.. .+|+||||++.+.. ||+ |++++.|++++++.
T Consensus 160 RvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999 44555555543 25799999998755 655 99999999999976
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 240 ~ 240 (253)
T d3b60a1 240 Q 240 (253)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.1e-38 Score=281.73 Aligned_cols=193 Identities=12% Similarity=0.107 Sum_probs=153.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
|+++||+++|++.. .++|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. +
T Consensus 17 I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 17 IDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp EEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHhh
Confidence 99999999997532 238999999999999999999999999999999999999 9999999999763 2
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCC----ccCCCCCccCCCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~LSgGekqR 216 (313)
+.++|++|+++. +. .|+++|+.++. + ....+.+.+.++..+ .+.+ .....||||||||
T Consensus 92 ~~i~~v~Q~~~l-f~--~Ti~eNi~~g~-----~-~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QR 162 (255)
T d2hyda1 92 NQIGLVQQDNIL-FS--DTVKENILLGR-----P-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 162 (255)
T ss_dssp HTEEEECSSCCC-CS--SBHHHHHGGGC-----S-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred heeeeeeccccC-CC--CCHHHHHhccC-----c-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHH
Confidence 459999999754 32 69999998652 2 123344445554433 1122 2344799999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~~ 284 (313)
++||+|++.+++++++|+++..||.. +++.|.++.. .+|+|||+++.+.. |++ |++++.|++++++..
T Consensus 163 i~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~ 242 (255)
T d2hyda1 163 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242 (255)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999994 4444444433 25799999998765 665 999999999998764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-36 Score=260.82 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=137.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVAT 153 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~ 153 (313)
.|+++||++.|+ ++ +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. +..++
T Consensus 2 ~lev~~ls~~y~-~~----vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS-SE----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred eEEEEEEEEEeC-Ce----EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence 489999999995 45 9999999999999999999999999999999999999 9999999999763 34589
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-CCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
|++|+... + ..+|+.+++.+....++.. .+...+.+.++.++. ..++++.+||||||||++||++++.+++++++
T Consensus 74 ~~~~~~~~-~-~~~t~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llll 149 (200)
T d1sgwa_ 74 FLPEEIIV-P-RKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 149 (200)
T ss_dssp EECSSCCC-C-TTSBHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEeecccC-C-CCcCHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEE
Confidence 99998543 2 3589999998887777643 344566777888773 45567889999999999999999999999999
Q ss_pred cCcccccCh----hhHHHHHHhhc
Q 021380 233 DGNYLFLDG----GVWKDVSSMFD 252 (313)
Q Consensus 233 d~~~llLDE----~~~~~l~~l~~ 252 (313)
|||+..||+ .+++.+.++.+
T Consensus 150 DEPt~gLD~~~~~~i~~~l~~~~~ 173 (200)
T d1sgwa_ 150 DDPVVAIDEDSKHKVLKSILEILK 173 (200)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHh
Confidence 999999999 35555555543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-36 Score=264.28 Aligned_cols=188 Identities=19% Similarity=0.143 Sum_probs=148.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|++..
T Consensus 3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~----~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC----CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCceEEEECCEECCcCCHHHH
Confidence 69999998765 799999999999999999999999999999999965 88999999998632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhccc-
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL- 225 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~- 225 (313)
...+|++|.....+ ..++++++.+. .......+.+.++++.++ ...++++.+||||||||++||++++.
T Consensus 71 ~~~~~~~~~~~~~~~--~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPF--ATPVWHYLTLH-----QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp HHHEEEECSCCCCCS--SCBHHHHHHHH-----CSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred HhhceeeeccccCCc--cccHHHHhhhc-----cchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhh
Confidence 23788888754222 24566555432 122334566778888887 34567788999999999999999975
Q ss_pred ------CccEEEEcCcccccCh----hhHHHHHHhhcC---eEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 226 ------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 226 ------~a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.+++|++|+|+..||. .+++.+.++.+. +|++|||++++.. |++ |++++.|+++++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence 5689999999999999 344444444333 4799999999888 655 99999999999853
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.1e-35 Score=262.08 Aligned_cols=183 Identities=10% Similarity=0.099 Sum_probs=139.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
.|+++|++ |++++ +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|. ++|++
T Consensus 38 ~i~~~~~~--~~g~p----vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~-----i~~v~ 103 (281)
T d1r0wa_ 38 NVSFSHLC--LVGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSGR-----VSFCS 103 (281)
T ss_dssp --CHHHHH--HTTCE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCSC-----EEEEC
T ss_pred cEEEEEcC--CCCCe----EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECCE-----EEEEe
Confidence 35555554 34555 9999999999999999999999999999999999999 99999999884 89999
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCC----CccCCCCCccCCCcchhhhhc
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~----~~~~~~LSgGekqRv~la~al 223 (313)
|++..++ .|+++|+.++. ..+......+++... ... ......|||||||||+||+|+
T Consensus 104 Q~~~l~~---~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL 173 (281)
T d1r0wa_ 104 QFSWIMP---GTIKENIIFGV-------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAV 173 (281)
T ss_dssp SSCCCCS---EEHHHHHTTTS-------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHH
T ss_pred ccccccC---ceeeccccccc-------cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHH
Confidence 9975433 48999986542 112233333333322 111 223447999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHHHHHh-hc------CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||....+.+.+. .. .+|+|||+++.+.. |++ |++++.|+++|+..
T Consensus 174 ~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 174 YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999998665555432 22 25799999987654 665 99999999999865
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=9.2e-17 Score=144.95 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=136.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~ 185 (313)
..-+|||.|++|||||||.+.|..++. -.. ....+..+++|+|+.++..+... -....+|.|.+
T Consensus 79 ~P~iIGIaG~sgSGKSTla~~L~~lL~---~~~---------~~~~v~~Is~D~F~~~~~~l~~~----~~~~~~g~Pes 142 (308)
T d1sq5a_ 79 IPYIISIAGSVAVGKSTTARVLQALLS---RWP---------EHRRVELITTDGFLHPNQVLKER----GLMKKKGFPES 142 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT---TST---------TCCCEEEEEGGGGBCCHHHHHHH----TCTTCTTSGGG
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHh---hhc---------CCCceEEEeeeeeECCchHHHHh----cCCccCCchHh
Confidence 346999999999999999999999985 110 12347889999987654321110 01234677888
Q ss_pred ccHHHHHHHHHHhhcC-CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhH------HHHHHhhcCeEEEE
Q 021380 186 FNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW------KDVSSMFDEKWFIE 258 (313)
Q Consensus 186 ~~~~~~~~~l~~l~~~-~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~------~~l~~l~~~~i~vt 258 (313)
+|.+.+.+.|..+..+ ....+|.||.-...++.-.......++++++||.+++.|+..+ ..+.+++|..||+.
T Consensus 143 ~D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvd 222 (308)
T d1sq5a_ 143 YDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVD 222 (308)
T ss_dssp BCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEE
T ss_pred hhHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeec
Confidence 8999998888888744 4567788887666666544445566899999999999987432 23778888899999
Q ss_pred cChHHHHHHHHhhhhc-cC----------------Chh---HHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 259 VDLDTAMQRVLKRHIS-TG----------------KPP---DVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 259 Hd~~~~~~rvigr~v~-~G----------------~~~---e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
.|.+.+..|.+.|.+. .| ... +.+...|.....|+.+ ||+|++++||+|++..
T Consensus 223 a~~~~~~~r~i~R~~~~r~~a~~d~~~~~~~y~~~~~~ea~~~a~~~w~~i~~~nl~~~I~Ptk~rADlIi~~~ 296 (308)
T d1sq5a_ 223 APEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHhcccccChHHHHHHHhccCHHHHHHHHHHHHHHcchhhHHHhCccchhcceEEEEcC
Confidence 9999988876644442 11 112 2345567888889876 9999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.9e-15 Score=126.40 Aligned_cols=188 Identities=23% Similarity=0.365 Sum_probs=122.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH--hcCCCC
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPW 184 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~--~~~~~~ 184 (313)
.-+|||.|+.|||||||.+.|+..+.....+. ....+.++++|+|+... ...+....... .+..+.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~---------~~~~~~vi~~D~yy~~~---~~~~~~~~~~~~~~~~~~~ 69 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDY---------RQKQVVILSQDSFYRVL---TSEQKAKALKGQFNFDHPD 69 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCG---------GGCSEEEEEGGGGBCCC---CHHHHHHHHTTCSCTTSGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchhcccc---------CCCceEEEecccccccc---chhhhhhhhhcccccCCcH
Confidence 35899999999999999999998875110000 11236778999775321 11111110000 112233
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHH
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..+.+.+.+.+..+..+.....+.+..-...+..... ...+..+++.++.+++.+ ..+.++++..||++-+.++.
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiveg~~~l~~----~~l~~~~D~~i~v~~~~~~~ 144 (213)
T d1uj2a_ 70 AFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADTR 144 (213)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSS----HHHHHHCSEEEEEECCHHHH
T ss_pred HHHHHHHHhhhhhhhcCCcccccccccccccccCceE-EecccceEEecchhhhcc----HHHHhhhheeeeecCCHHHH
Confidence 4555666666666665554444433333333322211 224578899999999888 46778889999999999999
Q ss_pred HHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 265 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 265 ~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
..|.+.|.. .+|...+.+..+|.....++++ ||.|++..||+|+++.
T Consensus 145 ~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~ 193 (213)
T d1uj2a_ 145 LSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRG 193 (213)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCC
Confidence 888887755 4787666666667777778777 9999999999999865
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.49 E-value=6.7e-15 Score=130.98 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=121.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcc-cCCcccCHHH-HHH-----hcC
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS-QLDAMEDPKE-AHA-----RRG 181 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~-~ltv~e~l~~-~~~-----~~~ 181 (313)
+|||.|++||||||+.+.|..++. .. .-...++.+|+|+.+.. .+.. .+.. ... .+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~---~~-----------~v~~~iI~~Dsfyr~~R~~~~~--~~~~~~~~~~~~~~~~ 69 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR---RE-----------GVKAVSIEGDAFHRFNRADMKA--ELDRRYAAGDATFSHF 69 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH---HH-----------TCCEEEEEGGGGBSCCHHHHHH--HHHHHHHHTCTTCSTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh---hc-----------CCCeEEEeCCCCCccchhhhhh--hhhhhhhhhccCCCCC
Confidence 899999999999999999998885 11 11256899998764321 1100 0000 011 112
Q ss_pred CCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchh---------hhhcccCccEEEEcCcccccChhhHHHHHHhhc
Q 021380 182 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED---------DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~l---------a~al~~~a~~li~d~~~llLDE~~~~~l~~l~~ 252 (313)
.|.+.+.+.+.+.|..++.+.....+.|+.-...+..- ...+..++.+|+.||-+.++..+- ..+.+++|
T Consensus 70 ~P~A~d~dlL~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~-~~ir~~~D 148 (288)
T d1a7ja_ 70 SYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLAD 148 (288)
T ss_dssp SGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSS-CBCGGGCS
T ss_pred CcccccHHHHHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccch-hhhHhhcC
Confidence 35566778888888988877666677776554444321 111345678999999988763110 23677888
Q ss_pred CeEEEEcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccC
Q 021380 253 EKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 253 ~~i~vtHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
..|||.-|.++...|.+.|++ ++|...|-+.+.+.+ .+|++. ||.|++..||++++..
T Consensus 149 lkIfVd~d~dlrliRRI~RD~~eRG~s~E~V~~~i~r-rmpdy~~yI~Pq~~~aDI~~~r~ 208 (288)
T d1a7ja_ 149 LKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINFQRV 208 (288)
T ss_dssp EEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHH-HHHHHHHHTGGGGGTCSEEEEEE
T ss_pred eEEEEECCCCeEEEeeehhhhhhcCCCHHHHHHHHHh-cchHHHHHHHHhhhceeEEEEec
Confidence 899999999999888887777 589877766666776 477776 9999999999998754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.26 E-value=1.6e-12 Score=106.66 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=76.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeEEEEecc--CCCCCcccCCcccCHHHHHHhcCCC
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMD--GFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i~~v~q~--~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
.++|+||||||||||++.|+|.++ ++.|.+...+... ..+.++.... ................. + .
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~ 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV-----G-S 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG---GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE-----T-T
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC---CCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhh-----h-h
Confidence 489999999999999999999999 9999988765331 1112221111 00000000000000000 0 0
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCc--ccccChhhHHHHHHhhcC----eEEE
Q 021380 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN--YLFLDGGVWKDVSSMFDE----KWFI 257 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~--~llLDE~~~~~l~~l~~~----~i~v 257 (313)
...+. ....+++|++++.+++.++...+++++.|++ ....++..++.+.+++.. ++++
T Consensus 73 ~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~ 136 (178)
T d1ye8a1 73 YGVNV----------------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVAT 136 (178)
T ss_dssp EEECH----------------HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEE
T ss_pred hhcCc----------------chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 00011 1113668899999999999999999999994 334455667777776643 3678
Q ss_pred EcChH
Q 021380 258 EVDLD 262 (313)
Q Consensus 258 tHd~~ 262 (313)
+|+..
T Consensus 137 ~h~~~ 141 (178)
T d1ye8a1 137 IPIRD 141 (178)
T ss_dssp CCSSC
T ss_pred EccHH
Confidence 88864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.95 E-value=2.8e-10 Score=94.04 Aligned_cols=179 Identities=15% Similarity=0.140 Sum_probs=80.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
...-+|||.|++|||||||++.|.-.+. . .| ..+..+.++.++.................. ...
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~---~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 83 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR---E-QG----------ISVCVFHMDDHIVERAKRYHTGNEEWFEYY--YLQ 83 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH---H-TT----------CCEEEEEGGGGCCCHHHHSSSSSCHHHHHH--HTS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc---c-cc----------ccceeccccccccCHHHHHHhhcccccccC--cch
Confidence 3445899999999999999999998885 1 11 113445666543332111111110000000 111
Q ss_pred CccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHH
Q 021380 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 185 ~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~ 264 (313)
..........+..+........+.+......+..- ........+++.++.+++.. .+...++..||++-+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivi~e~~~~~~~-----~~~~~~d~~i~l~~~~e~~ 157 (198)
T d1rz3a_ 84 WDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKR-TVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPREIR 157 (198)
T ss_dssp SCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEEE-EEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC----
T ss_pred HHHHHHHHHHHHHhhccCccccccchhhhcccccc-ccccccccccccccchhccc-----cccccceeeeeccCcHHHH
Confidence 11122222222222222222222211111111111 11233456777777665543 4456677788999999988
Q ss_pred HHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEec
Q 021380 265 MQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 309 (313)
Q Consensus 265 ~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~ 309 (313)
.+|.+.| .|...+....+|........+++.| +..||+||+
T Consensus 158 ~~R~~~r---~~~~~~~~~~~~~~~~~~y~~~~~p-~~~ADiIid 198 (198)
T d1rz3a_ 158 FARENDQ---VKQNIQKFINRYWKAEDYYLETEEP-IKRADVVFD 198 (198)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHCH-HHHCSEEEC
T ss_pred HHHHHHH---cCCCHHHHHHHHHHHHHHHHHhcCh-HHhCCEEeC
Confidence 7777644 3554444444444433333347766 457999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=2.5e-08 Score=87.96 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=81.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH------HHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE------AHARR 180 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~------~~~~~ 180 (313)
.-+|||.|+.|||||||.+.|.-.+. ...| ....+.++++|+|++...+ ++.+.. ....+
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~---~~~~--------~~~~v~~iS~DdfY~t~~~---r~~L~~~~~~~pl~~~R 92 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLM---EKYG--------GEKSIGYASIDDFYLTHED---QLKLNEQFKNNKLLQGR 92 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH---HHHG--------GGSCEEEEEGGGGBCCHHH---HHHHHHHTTTCGGGSSS
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHH---HHhC--------CCcceEeeccCCCCCCHHH---HHHHhhhccccccceec
Confidence 46999999999999999998876653 1000 0123778899988754321 111111 11236
Q ss_pred CCCCCccHHHHHHHHHHhhcCC------CccCCCCC----ccCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 181 GAPWTFNPLLLLNCLKNLRNQG------SVYAPSFD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~------~~~~~~LS----gGekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
|.|.++|...+.+.|..+.... ...+|.|+ .|...|+.-...+..+++++++||.+++..+
T Consensus 93 G~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p 163 (286)
T d1odfa_ 93 GLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 163 (286)
T ss_dssp CSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred CCCcchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccc
Confidence 8899999999999999886432 25677776 4566676554555667899999999988865
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.87 E-value=2.8e-05 Score=62.18 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+|++||||||+.+.|+-.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999885
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=4.7e-06 Score=66.05 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=7.8e-06 Score=66.38 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.++.|+||+|||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999988774
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=6.4e-07 Score=72.82 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=29.8
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++.+|++.+| +.+|+|+|||||||++.+|.-.+-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 455667777765 999999999999999999987764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.71 E-value=1.1e-05 Score=64.07 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=26.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.+|.|+|++||||||+.+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999998885
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=1.4e-05 Score=63.48 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999885
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=1.1e-05 Score=64.28 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceee
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~ 142 (313)
.|.|.||+|+|||||++.++..+. ...+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~---~~~~~v~ 33 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK---SSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH---HTTCCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---HCCCEEE
Confidence 488999999999999999999997 5544443
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.65 E-value=1.3e-05 Score=63.94 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+|++|||||||++.|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999988886
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.61 E-value=1.4e-05 Score=63.51 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.|.++.|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.54 E-value=2.5e-05 Score=70.83 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=42.5
Q ss_pred CCCCccCCCcchhhhhc----ccCccEEEEcCcccccChhhHH----HHHHhhc---CeEEEEcChHHHHH
Q 021380 207 PSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWK----DVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 207 ~~LSgGekqRv~la~al----~~~a~~li~d~~~llLDE~~~~----~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
..+|||||.++++|..+ ..++.++++|++...||+.... .|.++.. ..|++||+..++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ 401 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 401 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh
Confidence 36799999997776543 3466789999999999984444 3433322 26899999987654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.53 E-value=2.6e-05 Score=61.89 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=25.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|-.++|.||+||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5678899999999999999999998774
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.52 E-value=2.2e-05 Score=62.50 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..|+|+||.|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999875
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.52 E-value=2.7e-05 Score=61.66 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999984
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.49 E-value=3.4e-05 Score=67.26 Aligned_cols=61 Identities=11% Similarity=-0.127 Sum_probs=42.0
Q ss_pred CCCCCccCCCcchhhhh----cccCccEEEEcCcccccChhhHH----HHHHhhcC--eEEEEcChHHHHH
Q 021380 206 APSFDHGVGDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWK----DVSSMFDE--KWFIEVDLDTAMQ 266 (313)
Q Consensus 206 ~~~LSgGekqRv~la~a----l~~~a~~li~d~~~llLDE~~~~----~l~~l~~~--~i~vtHd~~~~~~ 266 (313)
+..+|+|+++...++.. ......+++.|++=.-|++.... .|.+..+. +|++||.+.++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~ 287 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA 287 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh
Confidence 45789999998766544 34456788888888888884444 44443332 5799999887643
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.48 E-value=3.9e-05 Score=61.16 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=23.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|+|.|++||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999886
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.45 E-value=6.6e-05 Score=62.80 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|+.|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 789999999999999999987664
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=3.6e-05 Score=59.86 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478889999999999999999885
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.41 E-value=4.1e-05 Score=59.49 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.|.|++|||||||++.|....
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 478899999999999999876533
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=2.5e-05 Score=63.15 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|-+|.|+|++||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998875
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.40 E-value=4.1e-05 Score=60.21 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.|.||+||||||+++.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998875
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=0.00011 Score=61.23 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
+++.-.+..+++++||+|+||||.+--|+-.+. - ..++++++.-|.+
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~---~-----------~~~kV~lit~Dt~ 50 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---D-----------EGKSVVLAAADTF 50 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---H-----------TTCCEEEEEECTT
T ss_pred CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---H-----------CCCceEEEeeccc
Confidence 445556778999999999999999888877664 1 2345888888854
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.35 E-value=3.4e-05 Score=64.97 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~ 142 (313)
+|...+++|++|+|||||++.|.|-.. -..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~---~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC---CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh---hhccCcc
Confidence 589999999999999999999988765 5566664
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.32 E-value=5.7e-05 Score=59.54 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++|+||+||||||+.+.|+-.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999998774
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.00015 Score=60.44 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=34.3
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
+++=++..+++++||+|+||||.+--|+-.+. - ..+.++++.-|.|
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~---~-----------~g~kV~lit~Dt~ 48 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---Q-----------QGKSVMLAAGDTF 48 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH---T-----------TTCCEEEECCCTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---H-----------CCCcEEEEecccc
Confidence 34445567999999999999999988887775 1 1245888888854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.31 E-value=6.8e-05 Score=60.97 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+|.|+||.||||||+.+.|+..+.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3567999999999999999999998874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=7.8e-05 Score=61.86 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|.++.|+||+|||||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999998876
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.27 E-value=9e-05 Score=60.06 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|-.+.|+||.||||||+.+.|+..+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688899999999999999999998775
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.25 E-value=8.7e-05 Score=60.48 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++-.++.|+||.||||||+.+.|+..+.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556899999999999999999999875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.25 E-value=0.00017 Score=59.88 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
++.+++++||+|+||||++--|+-.+. - ..++++++.-|.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~---~-----------~g~kV~lit~Dt~ 45 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---N-----------LGKKVMFCAGDTF 45 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---T-----------TTCCEEEECCCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---H-----------CCCcEEEEEeccc
Confidence 578999999999999999988887775 1 2245788888854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.15 E-value=0.00011 Score=58.76 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.|.|++||||||+++.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.14 E-value=9.3e-05 Score=60.29 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=26.1
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++.++.|+||.||||||+.+.|+..+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56788999999999999999999998774
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.12 E-value=0.00013 Score=57.82 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00012 Score=59.49 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999988763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.10 E-value=0.00032 Score=58.15 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
.+.++.++||||+||||++-.|+-.+. . ..++++++.-|.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~----~----------~g~kV~lit~Dt~ 49 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK----G----------KGRRPLLVAADTQ 49 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH----H----------TTCCEEEEECCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH----H----------CCCcEEEEecccc
Confidence 456899999999999999988888775 1 1244788888854
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.10 E-value=8.4e-05 Score=60.45 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.|+|+|+.|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.07 E-value=0.00015 Score=59.06 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.|+||+|||||||++.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999988774
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.00017 Score=58.39 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+|.|+||.||||||..+.|+..+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.04 E-value=3.4e-05 Score=65.18 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~ 142 (313)
+|...+++|++|+|||||+|.|.|-.. -..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~---~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH---hhhcccc
Confidence 578889999999999999999998766 5667665
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.02 E-value=0.00019 Score=57.28 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+||.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999999885
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.02 E-value=0.00034 Score=58.11 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=28.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
+...+++++||+|+||||++--|+-.+. - ..++++++.-|.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~---~-----------~g~kV~lit~Dt~ 51 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK---K-----------KGFKVGLVGADVY 51 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH---H-----------TTCCEEEEECCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---H-----------CCCceEEEEeecc
Confidence 4678999999999999999888887765 1 2245888888854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0002 Score=58.80 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
+|+|.||.||||||+.+.|+.-+.-.+-++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 899999999999999999999986222344443
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00021 Score=57.75 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
..+.|+||+|+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999988765
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.99 E-value=0.00022 Score=60.48 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
...+..+.|.||+|||||||++.|++.+.
T Consensus 29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 29 VESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34456788999999999999999999885
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00017 Score=56.41 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
|-.|+|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5679999999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.00021 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
..+-.|||+|..|+|||||++.|+|.
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34567999999999999999999874
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.95 E-value=0.00023 Score=57.06 Aligned_cols=27 Identities=37% Similarity=0.420 Sum_probs=23.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-++..++.++|++||||||+++.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 467789999999999999999877543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.95 E-value=0.00017 Score=58.32 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-++.|+||.||||||+++.|+-.+.
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3588999999999999999998875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.00022 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.00023 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|+|+.||||||+.+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56779999999999999999886
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.94 E-value=0.00024 Score=58.64 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+++|.||.||||||+.+.|+.-+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999986
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.94 E-value=0.00025 Score=57.73 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=22.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+|.++|.+|||||||++.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.93 E-value=0.00025 Score=56.88 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|+||.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999885
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00035 Score=62.02 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+.+.-.-.+.-+|||.||.|||||||+..|...+.
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3444333345678999999999999999999988775
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.86 E-value=0.0003 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|.|+|+.|+|||||++.+.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00031 Score=59.36 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=24.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+=+|++++- .+.++.|.|||++||||+||.++=.
T Consensus 31 VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~ 64 (234)
T d1wb9a2 31 IANPLNLSP-QRRMLIITGPNMGGKSTYMRQTALI 64 (234)
T ss_dssp CCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEECC-CceEEEEeccCchhhHHHHHHHHHH
Confidence 334555442 3468899999999999999998543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.84 E-value=0.00024 Score=56.35 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|+|+|+.|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.00034 Score=57.89 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|-+|+|-|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999885
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.83 E-value=0.00019 Score=58.25 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++-+|+|-|+.||||||+++.|...+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567999999999999999999988764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=0.00036 Score=55.83 Aligned_cols=24 Identities=46% Similarity=0.739 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+||.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998875
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.81 E-value=0.00042 Score=57.36 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
=++|.++.|.|.+||||||+.+.|.-.+
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998765
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00036 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.+|+|-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999885
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.00033 Score=57.00 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|+|+|+.|||||||++.|.|--
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.81 E-value=0.0002 Score=57.23 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-|+|+|+.|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999885
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.80 E-value=0.00032 Score=56.65 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=45.9
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
...++.+.++++-. .+...++.+|+|.-+.+...+|++.| .|...+.+.... ....+..+. +..||+
T Consensus 101 ~~~vi~e~~~~~~~-----~~~~~~d~vI~v~a~~e~r~~Rl~~R---~~~~~~~~~~~~-~~q~~~~~~----~~~aD~ 167 (191)
T d1uf9a_ 101 APLVFLEIPLLFEK-----GWEGRLHGTLLVAAPLEERVRRVMAR---SGLSREEVLARE-RAQMPEEEK----RKRATW 167 (191)
T ss_dssp CSEEEEECTTTTTT-----TCGGGSSEEEEECCCHHHHHHHHHTT---TCCTTHHHHHHH-TTSCCHHHH----HHHCSE
T ss_pred cceEEEEeeccccc-----cccccceeEEEEecchhhHHHHHHhc---ccchHHHHHHHH-HhCCCHHHH----HHhCCE
Confidence 45566776655433 34556677889999999888787765 355555554433 233444333 356999
Q ss_pred EeccCC
Q 021380 307 VIKSID 312 (313)
Q Consensus 307 i~~~~~ 312 (313)
+|+|.+
T Consensus 168 vI~N~~ 173 (191)
T d1uf9a_ 168 VLENTG 173 (191)
T ss_dssp EECCSS
T ss_pred EEECCC
Confidence 998763
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00035 Score=56.35 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=26.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+.+|+++.|.||+|+|||||+-.++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999998888765
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00029 Score=55.90 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.77 E-value=0.00031 Score=56.09 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999885
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.76 E-value=0.00047 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|.+|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.76 E-value=0.0002 Score=56.73 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=22.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
++.-.++|+|++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344579999999999999999987743
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.75 E-value=0.00038 Score=58.41 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
++++.|.|||.+||||+||.++=.
T Consensus 35 ~~~~iiTGpN~~GKSt~lk~i~l~ 58 (224)
T d1ewqa2 35 HELVLITGPNMAGKSTFLRQTALI 58 (224)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCccccchhhhhhHHH
Confidence 358999999999999999987543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0004 Score=55.44 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+||.||||||..+.|+-.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998775
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.74 E-value=0.00015 Score=58.35 Aligned_cols=21 Identities=52% Similarity=0.684 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 021380 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gl 130 (313)
|||+|+.++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999998764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.0005 Score=55.07 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|+||.||||||+.+.|+..+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999999875
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.67 E-value=0.00055 Score=55.57 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-.+.|+||.||||||+.+.|+..+.
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHC
Confidence 345788999999999999999998774
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.00023 Score=56.91 Aligned_cols=22 Identities=55% Similarity=0.761 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll 131 (313)
|||+|..++|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00066 Score=56.25 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.+|+|-|+-||||||+++.|...+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3799999999999999999999998885
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.56 E-value=0.00054 Score=56.24 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=44.3
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
.+.++.+.++++=- .+...++.+|+|..+.+....|+..|. |.+.+.+...+. ...+..+. +..||+
T Consensus 105 ~~~vv~e~~ll~e~-----~~~~~~d~ii~v~~~~~~r~~R~~~R~---~~s~e~~~~~~~-~Q~~~~~k----~~~aD~ 171 (205)
T d1jjva_ 105 APYTLFVVPLLIEN-----KLTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMN-SQVSQQER----LKWADD 171 (205)
T ss_dssp SSEEEEECTTTTTT-----TCGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHH-HSCCHHHH----HHHCSE
T ss_pred CCeEEEEecccccc-----chhhhhhheeeecchHHHHHHHHHhcC---CchHHHHHHHHH-hCCCHHHH----HHhCCE
Confidence 55677787766521 344567778999999999887776542 555555555433 22333333 456999
Q ss_pred EeccCC
Q 021380 307 VIKSID 312 (313)
Q Consensus 307 i~~~~~ 312 (313)
||++..
T Consensus 172 vI~N~~ 177 (205)
T d1jjva_ 172 VINNDA 177 (205)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 998863
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.53 E-value=0.00047 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999987743
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.00085 Score=53.01 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=27.3
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..++|.+++|.|+=|||||||.|.++.-+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 457899999999999999999999998874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.00033 Score=58.37 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+|+|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.00071 Score=55.65 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=42.2
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
...++.+.++++- ..+...++.+|+|.-+.+...+|+..|. |...+....... ...+..+. ...||+
T Consensus 106 ~~~~~~e~~ll~e-----~~~~~~~~~iI~V~a~~e~r~~R~~~R~---~~~~~~~~~~~~-~Q~~~~~k----~~~aD~ 172 (208)
T d1vhta_ 106 SPYVLWVVPLLVE-----NSLYKKANRVLVVDVSPETQLKRTMQRD---DVTREHVEQILA-AQATREAR----LAVADD 172 (208)
T ss_dssp SSEEEEECTTTTT-----TTGGGGCSEEEEEECCHHHHHHHHHHHH---TCCHHHHHHHHH-HSCCHHHH----HHHCSE
T ss_pred cCCcceeeeeccc-----ccccccCCEEEEEeCCHHHHHHHHHHhh---hhhHHHHHHHHH-hCCCHHHH----HHhCCE
Confidence 4556666665542 1234456678899999988877877653 233333333222 22233333 466899
Q ss_pred EeccCC
Q 021380 307 VIKSID 312 (313)
Q Consensus 307 i~~~~~ 312 (313)
||+|..
T Consensus 173 vI~N~~ 178 (208)
T d1vhta_ 173 VIDNNG 178 (208)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 998874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.47 E-value=0.00079 Score=55.91 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|.||+|+||||++++|+..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998774
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.00076 Score=55.01 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.42 E-value=0.0012 Score=58.30 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=24.9
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.+.-++||.|+.|||||||+..|...+
T Consensus 47 ~~~~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 47 QTGRAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 34567799999999999999999998765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.41 E-value=0.00079 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
++.-.++|+|.+|||||||++.|.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.37 E-value=0.00099 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.37 E-value=0.00053 Score=60.66 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..+.-+.|.|+.|||||||++.|++.++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 45556689999999999999999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.0011 Score=55.48 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+.|.||+|+||||++++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999875
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.33 E-value=0.00032 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|..|+|||||++.|+|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.29 E-value=0.0012 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999885
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.28 E-value=0.0013 Score=54.63 Aligned_cols=24 Identities=50% Similarity=0.750 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+.|.||+|+||||+++.|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999886
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0012 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4889999999999999998763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.21 E-value=0.0014 Score=51.68 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++++|+.|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999988764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.19 E-value=0.0014 Score=54.68 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+.||.|+||||++++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999885
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.19 E-value=0.00098 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-|||+|...||||||++.|+|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 3999999999999999999874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0014 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|.||+|+||||+++.|+..+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHc
Confidence 77999999999999999998763
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0013 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988774
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0015 Score=51.77 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.00053 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.|+|+|+.++|||||++.|.|.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999774
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0011 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=23.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
+++|.++-|.||.|||||||+-.++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999877653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.13 E-value=0.001 Score=56.73 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|..|+|||||+|.|.|.-
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999964
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0018 Score=50.70 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987775
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.02 E-value=0.0018 Score=53.90 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|||+|...||||||++.|.+...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~ 30 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAV 30 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhcc
Confidence 699999999999999999988753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.01 E-value=0.0018 Score=56.62 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-+.++||+|+|||+|+|.|+..+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 34556899999999999999999885
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0021 Score=53.26 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=25.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+++|.++.|.|++|+|||||+-.++...
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999998887643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.99 E-value=0.0018 Score=55.13 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-|+++..-+.+|+++.|.|++|+|||||+.-|+-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 56666556899999999999999999998887754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.0018 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++++|.+|+|||||++.+.+-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0022 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.002 Score=55.77 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.2
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.=+.|.+|+..+|+|+.|+|||||+..|+....
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999999999988765
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.93 E-value=0.0021 Score=53.47 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+++|.++.|.||+|||||||+--++-.
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999998766543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0014 Score=58.84 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=21.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHH
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~ 128 (313)
+..+.+.+|+|||||||||++..|.
T Consensus 22 f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 22 FGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4545589999999999999999985
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0021 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.|+|+|+.|+|||||++.+.+-
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 36899999999999999998753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.88 E-value=0.0039 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
...+.|.||.|+||||+++.|+..++
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 34788999999999999999999985
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0022 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998776
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0029 Score=53.83 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..-+.|.||+|+|||+|++.|+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34577999999999999999999885
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.86 E-value=0.0022 Score=53.16 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=25.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+++|.++.|.|++|+|||||+.-++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997776654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.85 E-value=0.0022 Score=52.43 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=22.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~ 128 (313)
-+++|+++.|.|++|+|||||+--++
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999999985444
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.84 E-value=0.0026 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998876
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0023 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0027 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0027 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999888764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.002 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999998875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.81 E-value=0.0025 Score=52.40 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+++|+++.|.|++|+|||||+--++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887655
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.0028 Score=49.66 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0025 Score=49.64 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.|+|+|..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.78 E-value=0.0013 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+.-.++|+|+.|+|||||++.|.+
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhc
Confidence 3345799999999999999998865
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0024 Score=50.15 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999988765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0027 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|.||+|+||||++++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56899999999999999998774
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.76 E-value=0.0025 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.++.|.||.|+|||||++.++..+.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 466899999999999999998877664
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.76 E-value=0.0027 Score=53.63 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.-+.|.||.|+|||+|++.|+..+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 4578999999999999999999875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0031 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.0031 Score=49.03 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0032 Score=49.63 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999987765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.69 E-value=0.0042 Score=49.68 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
.+.|+|..|+|||||++.+. ......|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence 68899999999999999994 3332337777
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0033 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.65 E-value=0.0034 Score=53.51 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..+.-+.|.||+|+|||+|++.|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 34444578999999999999999999885
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0028 Score=49.75 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999987754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0031 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 4899999999999999988763
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0032 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999887764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0034 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988753
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0068 Score=51.09 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+|.++.|.|+.|+|||||+-.|+-.+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 459999999999999999998887765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.0039 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999987764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.0037 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|.||.|+||||++++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 66899999999999999999874
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.52 E-value=0.0053 Score=48.62 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=24.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
.+.|+|..|+|||||++-+....- |+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~---~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE---AGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS---CCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC---CCccEE
Confidence 588999999999999998876655 877753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0037 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.|+|+|..|+|||||++.+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999887753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.51 E-value=0.0025 Score=57.77 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.|+|+|..|+|||||+|.|.|.-
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999999953
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.49 E-value=0.004 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++||.|+-||||||+++.|...+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 379999999999999999997654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.47 E-value=0.0049 Score=50.85 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
-.+.|+|.+|+|||||++.+..... .|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~--~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHV--VLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC--CCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCc--CCCCC
Confidence 3689999999999999988743321 27777
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0044 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988763
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.46 E-value=0.0064 Score=55.01 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++-++.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 4567899999999999999999999885
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0035 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.|.||+|+||||+++.++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999999876
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.43 E-value=0.0041 Score=52.51 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+.|.||.|+|||+|++.|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 378999999999999999999875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0045 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0036 Score=49.33 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999988754
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.36 E-value=0.0033 Score=52.81 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 466679999999999999998874
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.32 E-value=0.0031 Score=50.05 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
++--.++|+|+.|+|||||++.+.+-
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 44457899999999999999987543
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0052 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0045 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|..|+|||||++.+.+-
T Consensus 6 iKivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999887753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.0055 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.+.++|..|+|||||++.+.+-
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988763
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.22 E-value=0.0065 Score=51.45 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=24.3
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..++| +.|.||.|+|||+|++.++....
T Consensus 34 g~~~~~g--iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 34 GVKPPRG--ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCce--eEEecCCCCCchHHHHHHHHHhC
Confidence 3344455 77899999999999999999875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.0061 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++++|..|+|||||++.+.+-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999977764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.17 E-value=0.0061 Score=47.76 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.+.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999998765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.17 E-value=0.0033 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
=+.|+||.|+|||||+|.|+++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 478999999999999999999985
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0062 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999987654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0059 Score=50.51 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+++|=|+-||||||+++.|.-.+.
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence 35899999999999999999998874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.09 E-value=0.0044 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~G 129 (313)
-.+.|+|++|+|||||++.+.+
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.08 E-value=0.0074 Score=53.85 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=27.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++++..+.+.||.|+|||||.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 567888999999999999999999999986
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.0036 Score=49.28 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=9.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.|+|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0063 Score=48.46 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999988765
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.01 E-value=0.0061 Score=55.90 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
=+.++||.|+|||-|+|.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999999885
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0032 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999876553
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.85 E-value=0.009 Score=47.75 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=22.8
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHH
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEV 127 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L 127 (313)
++.--+.+ .|.=+.|.|++|+|||||.-.|
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l 35 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDL 35 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHH
Confidence 44444445 5788999999999999998655
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.85 E-value=0.0075 Score=47.81 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
.++|+|..|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986655
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.81 E-value=0.008 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.+-.+||+|..-+|||||++.|++.
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 3456999999999999999999986
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.80 E-value=0.0094 Score=47.61 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=19.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~ 128 (313)
.|.=+.|.|++|+|||||+-.+.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 47789999999999999986543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.79 E-value=0.013 Score=50.18 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=27.5
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.=+.+.+|+.++|+|+.|+|||||+..|+-..
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999988777654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.0081 Score=48.00 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|..|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999877653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.005 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999854
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.011 Score=50.36 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-++.|.++-|.||+|+|||||+-.++....
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999877776654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.65 E-value=0.0075 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+||+|.-.+|||||++.|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 37999999999999999999865
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.63 E-value=0.013 Score=46.35 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
.+.|+|..|+|||||++.+..-.-...|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5789999999999999988665432225544
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.59 E-value=0.014 Score=49.85 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=25.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-++.|.++-|.||+|+|||||+-.++....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence 578999999999999999999866665543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.014 Score=50.87 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.-.+.++||+|+|||.|++.|+..+.
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCcchhHHHHHHHHhhcc
Confidence 34688999999999999999999884
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.30 E-value=0.013 Score=47.68 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+||+|.-++|||||+..|.+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Confidence 48999999999999999997654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.25 E-value=0.015 Score=49.62 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-++.|.++-|.||+|||||||+-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 467899999999999999999988887764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.17 E-value=0.0087 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-|||+|..-+|||||++.|+|.-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.96 E-value=0.018 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
...+++|.|.-|.|||||++.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999998764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.018 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.||.|+||||+++.++..+.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 588899999999999999999884
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.92 E-value=0.011 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++++|.-+||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.012 Score=48.53 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G 129 (313)
++.|.|.=|||||||++-|..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678999999999999988765
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.90 E-value=0.015 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+||+|+.|+|||||+..|...-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Confidence 37999999999999999996543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.86 E-value=0.018 Score=49.01 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.+||||-.-+|||||++.|++.-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.78 E-value=0.022 Score=45.05 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=19.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEV 127 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L 127 (313)
-.|.=+.|.|++|+|||||+-.+
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHH
Confidence 35788999999999999987544
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.64 E-value=0.013 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++++|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999953
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.021 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.||+|+||||+++.++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 467889999999999999999885
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.60 E-value=0.016 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-+||+|+.|||||||+..|.-.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~ 29 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYY 29 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4899999999999999998543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.09 E-value=0.027 Score=45.44 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
++.--+||+|.-.+|||||++.|+|..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 344569999999999999999998865
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.00 E-value=0.035 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.|=|+=|+||||+++.|...+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 688999999999999999999885
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.95 E-value=0.036 Score=44.68 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+||+|.-.+|||||++.|.+.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999988763
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.035 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH-HHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVV-RRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~-Gll~ 132 (313)
-+.|+|++||||||+++.|. .++.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999997544 4443
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.49 E-value=0.044 Score=47.54 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.-.+.++||+|+|||.|.+.|+..+-
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcchHHHHHHHHHHHhc
Confidence 34678999999999999999999873
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=92.46 E-value=0.032 Score=47.63 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
++| .=+.+.+|+.++|+|+.|+|||+|+..+.-..
T Consensus 57 ~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 57 AID-AMIPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred EEe-ccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence 553 44588999999999999999999998765444
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.29 E-value=0.036 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|.||.|+|||-|++.++....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 67999999999999999998774
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.18 E-value=0.044 Score=47.76 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..++| ++.+.||.|+|||.|.+.|++.+.
T Consensus 120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 120 RYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred ccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 34444 566689999999999999999874
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=92.07 E-value=0.041 Score=48.21 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.|=|+=||||||+++.|...+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998874
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.07 E-value=0.03 Score=47.98 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=27.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
++ |.=+.+.+|+.++|+|+.|+|||||+..++..
T Consensus 58 aI-D~l~pig~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 58 AV-DSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp HH-HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred EE-ecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence 44 34568999999999999999999998655543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.051 Score=43.84 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+.|+|+.|.|||+++.-|+-.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 578999999999999999998875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.056 Score=45.85 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.-+.|+||.|+|||+++.-++-.+.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHH
Confidence 3567999999999999999998874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=91.58 E-value=0.039 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.|-|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 588999999999999999987663
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.52 E-value=0.045 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+||+|.-++|||||+..|....
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~~ 27 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMDR 27 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHc
Confidence 48999999999999999886543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.27 E-value=0.058 Score=47.77 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=22.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++++- +.++||.|+|||-|.|.|+.++.
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence 34454 55669999999999999998874
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.11 Score=38.37 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|-.+.+.|-+||||||+.+.|.--+.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~ 31 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFL 31 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999977664
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.10 E-value=0.077 Score=44.86 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=25.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
..++--.+.|.||.++|||||++.|..++
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34566789999999999999999999998
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.75 E-value=0.083 Score=43.35 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll 131 (313)
++++|.-.+|||||+..|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 7999999999999999997655
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.54 E-value=0.068 Score=39.15 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=20.9
Q ss_pred ecCCeEEEEECCCCCCHHHHH-HHHHHHh
Q 021380 104 VNVKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLl-k~L~Gll 131 (313)
+++|+.+.|.+|.|||||+.+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 468999999999999999554 3444433
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.28 E-value=0.052 Score=45.81 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTL-AAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTL-lk~L~Gll~ 132 (313)
-+.|+|+.||||||+ +..+.-++.
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll~ 40 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLIR 40 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHHH
Confidence 367889999999975 455555543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.70 E-value=0.063 Score=45.78 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHH-HHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLA-AEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLl-k~L~Gll~ 132 (313)
+.|.|+.||||||.+ ..++-++.
T Consensus 27 ~lV~g~aGSGKTt~l~~ri~~ll~ 50 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLTHRIAYLMA 50 (318)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHHHH
Confidence 668899999999765 44555553
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.54 E-value=0.12 Score=41.44 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.-+.|.||+|+||||+++.++..+.
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999875
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=89.38 E-value=0.11 Score=41.98 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.9
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++--.+.|.||.++|||+++..|+.++.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 357778999999999999999999999985
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.37 E-value=0.12 Score=45.45 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=19.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+.++.|.||.|+||||++..+.-
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~~l~ 185 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAKLLA 185 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHHHHH
Confidence 356999999999999998855443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.092 Score=45.28 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.6
Q ss_pred cCCeEEEEECCCCCCHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLl 124 (313)
+.|++..+.|.+|+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999975
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=88.72 E-value=0.15 Score=48.85 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=25.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.+.|.|.|.+|||||+-.|.|...+.
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988774
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.56 E-value=0.099 Score=45.23 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=17.0
Q ss_pred CCeEEEEECCCCCCHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLl 124 (313)
.|++..+.|.+|+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999964
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.56 E-value=0.16 Score=48.95 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=25.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.+.+.|.|.+|||||+-.|.|+..+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999988874
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.54 E-value=0.11 Score=43.02 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-++|+|.-++|||||+..|+-..
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~~~ 30 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIYKC 30 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999998886544
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.01 E-value=0.098 Score=45.84 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 021380 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gl 130 (313)
+||+|+-|+|||||+..|.-.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~ 40 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQR 40 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 999999999999999998643
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=87.87 E-value=0.18 Score=48.45 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=25.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+.|.|.|.+|||||+-.|.|+..+.
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988873
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.75 E-value=0.15 Score=42.91 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+-.++|+|-.-+|||||++.|.|.-.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccce
Confidence 3566799999999999999999998543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.69 E-value=0.13 Score=44.40 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=17.5
Q ss_pred CCeEEEEECCCCCCHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLA 124 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLl 124 (313)
.|++..+.|-+|+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6888899999999999986
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.42 E-value=0.1 Score=43.36 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 021380 110 VGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gl 130 (313)
++|+|.-++|||||+..|.-.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~~ 47 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILFL 47 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHHHH
Confidence 899999999999999988543
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.78 E-value=0.21 Score=48.64 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.+.|.|.|.+|||||+-.|.|+..+.
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998874
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=86.67 E-value=0.15 Score=42.74 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=21.7
Q ss_pred ecCCeEEEEECCCCCCHHH--HHHHHHHHh
Q 021380 104 VNVKHIVGLAGPPGAGKST--LAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKST--Llk~L~Gll 131 (313)
+.+|+.+.|.+|.|||||+ |..++...+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~ 35 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999997 335555444
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.39 E-value=0.18 Score=41.81 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.-|.|.|+.|+||+++.+.|...-.
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 345588999999999999999987653
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=86.05 E-value=0.2 Score=36.91 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.1
Q ss_pred CCeEEEEECCCCCCHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAA 125 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk 125 (313)
..++..|.+|-|||||+++-
T Consensus 7 ~~~~~ll~apTGsGKT~~~~ 26 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVP 26 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 44667789999999999763
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=85.91 E-value=0.23 Score=48.24 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.+.+.|.|.+|||||.-.|.|+..+.
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988874
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.81 E-value=0.18 Score=44.88 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.|||++|.|||+++.-|+-.+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999999988887653
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=85.44 E-value=0.29 Score=47.09 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.+.+.|.|.+|||||+-.|.|...+.
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998874
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.05 E-value=0.31 Score=36.71 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=20.5
Q ss_pred CeEEEEECCCCCCHHH-HHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKST-LAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKST-Llk~L~Gll 131 (313)
|.+..|+||=.||||| |++.+-...
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~ 27 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLE 27 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHH
Confidence 6788999999999999 667765554
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.48 E-value=0.28 Score=39.83 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=18.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.|+-+.|++|.|+|||+..-+.+-.
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~~~ 81 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMSLF 81 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHHHHH
Confidence 4677888999999999876544433
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.82 E-value=0.45 Score=35.45 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+|.+..|+||=.|||||-|=..+-.+
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~ 26 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRF 26 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEEecccCHHHHHHHHHHHHH
Confidence 58999999999999999765554444
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=80.78 E-value=0.56 Score=36.78 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=22.0
Q ss_pred eEEEEECCC-CCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPP-GAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpN-GsGKSTLlk~L~Gll~ 132 (313)
.++-|.|-+ |+||||+.-.|+..+.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa 27 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAK 27 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHH
Confidence 467899997 9999999999999885
|