Citrus Sinensis ID: 021395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMSM
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccccccccEEEcccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHcccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccEccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccEEccccccccc
Coil and Loop (DISEMBL)
mssplyaafclpsspylskfsryrvtccsgsqqkYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAaeddslishssvplpvdalisqlddlsvgycshyssgfrsspeSVLESIERYLFdkkgfrrtnarnqlieprsLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGlidfdveisfpldlyslprgyqkqkskdsdqphIITVQMLLEEILRNLKNafwpfqhdrsRSLFLRAARAANCidqlnsgdsgLQLASAKAARHRLErgvwnsvrfgdmsm
Flexible Loop (DISEMBL)
mssplyaaFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIkrlsnveretsiSINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYssgfrsspesvLESIERYLFdkkgfrrtnarnqlieprsLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQkqkskdsdqphIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAArhrlergvwnsvrfgdmsm
Low Complexity Region (SEG)
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDrsrslflraaraaNCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMSM
Disordered region (IsUnstruct)
****LYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFR****SVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRG************HIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN*******************RGVWN*********
Disordered Region (DISOPRED)
***PL***FCLPSSPYLSKFSRYRV***************KLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERE**ISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSS*FRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQ**S***GLQLASAKAARHRLERGVWNSVRFGDM**
Disordered Region (DISEMBL)
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYS*********VLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPR***********QPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQ*********RLERGVWNSVRFGDMSM
Disordered Region (DISPRO)
**SPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQ*********RLERGVWNSVRF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPLYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
359494997	423	PREDICTED: uncharacterized protein LOC10	0.900	0.666	0.716	1e-115
296090330	423	unnamed protein product [Vitis vinifera]	0.900	0.666	0.716	1e-114
357456475	422	hypothetical protein MTR_3g014680 [Medic	0.955	0.708	0.633	1e-111
356510483	485	PREDICTED: uncharacterized protein LOC10	0.942	0.608	0.652	1e-108
255641242	422	unknown [Glycine max]	0.942	0.699	0.631	1e-104
255543955	470	conserved hypothetical protein [Ricinus	0.869	0.578	0.671	3e-97
224057294	426	predicted protein [Populus trichocarpa]	0.853	0.626	0.624	7e-94
224072891	423	predicted protein [Populus trichocarpa]	0.913	0.676	0.562	3e-85
449445168	239	PREDICTED: uncharacterized protein LOC10	0.696	0.912	0.716	4e-85
118481905	299	unknown [Populus trichocarpa]	0.808	0.846	0.582	3e-78

>gi|359494997|ref|XP_002265457.2| PREDICTED: uncharacterized protein LOC100249731 [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/289 (71%), Positives = 240/289 (83%), Gaps = 7/289 (2%)

Query: 24  RVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISI 83
           RV C    + +Y + DLK  LH  LD++GTD   A+ AR+GF S+IKRLS++ERETSISI
Sbjct: 39  RVVC----RAQYASEDLKFVLHHALDALGTDIAHAKVARDGFCSEIKRLSDIERETSISI 94

Query: 84  NKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVL 143
           N+ VDLGKTAL+IAAEDDSLISHSSVPLPVDA I +LDDLS+ YCSHYSS FR+SPE   
Sbjct: 95  NRGVDLGKTALYIAAEDDSLISHSSVPLPVDAFIERLDDLSMDYCSHYSSAFRASPEIFF 154

Query: 144 ESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGL 203
           E++ERYL+  KGFRRTNA   L E R+LYLHSVLTHR+GSA MLSLIYSEILKMLR+WGL
Sbjct: 155 ETLERYLYINKGFRRTNA--NLSESRALYLHSVLTHRSGSAAMLSLIYSEILKMLRLWGL 212

Query: 204 IDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSR 263
           +DFDVEI FP D +SLPRGY KQKSK+SDQPHI+T Q L  E+LR+LK+AFWPFQHD +R
Sbjct: 213 LDFDVEIFFPHDSHSLPRGYHKQKSKESDQPHIMTSQSLFVEMLRSLKDAFWPFQHDNTR 272

Query: 264 SLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFGDM 311
           SLFLRAA AANCID+ N   +SG +LASAKAA+HRLERGVW SVRFGDM
Sbjct: 273 SLFLRAAHAANCIDRSNIVTESGFELASAKAAQHRLERGVWTSVRFGDM 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090330|emb|CBI40149.3| unnamed protein product [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/289 (71%), Positives = 240/289 (83%), Gaps = 7/289 (2%)

Query: 24  RVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISI 83
           RV C    + +Y + DLK  LH  LD++GTD   A+ AR+GF S+IKRLS++ERETSISI
Sbjct: 42  RVVC----RAQYASEDLKFVLHHALDALGTDIAHAKVARDGFCSEIKRLSDIERETSISI 97

Query: 84  NKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVL 143
           N+ VDLGKTAL+IAAEDDSLISHSSVPLPVDA I +LDDLS+ YCSHYSS FR+SPE   
Sbjct: 98  NRGVDLGKTALYIAAEDDSLISHSSVPLPVDAFIERLDDLSMDYCSHYSSAFRASPEIFF 157

Query: 144 ESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGL 203
           E++ERYL+  KGFRRTNA   L E R+LYLHSVLTHR+GSA MLSLIYSEILKMLR+WGL
Sbjct: 158 ETLERYLYINKGFRRTNA--NLSESRALYLHSVLTHRSGSAAMLSLIYSEILKMLRLWGL 215

Query: 204 IDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSR 263
           +DFDVEI FP D +SLPRGY KQKSK+SDQPHI+T Q L  E+LR+LK+AFWPFQHD +R
Sbjct: 216 LDFDVEIFFPHDSHSLPRGYHKQKSKESDQPHIMTSQSLFVEMLRSLKDAFWPFQHDNTR 275

Query: 264 SLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFGDM 311
           SLFLRAA AANCID+ N   +SG +LASAKAA+HRLERGVW SVRFGDM
Sbjct: 276 SLFLRAAHAANCIDRSNIVTESGFELASAKAAQHRLERGVWTSVRFGDM 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456475|ref|XP_003598518.1| hypothetical protein MTR_3g014680 [Medicago truncatula] gi|355487566|gb|AES68769.1| hypothetical protein MTR_3g014680 [Medicago truncatula]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/314 (63%), Positives = 249/314 (79%), Gaps = 15/314 (4%)

Query: 11  LPSSPYLSKFSRY------------RVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFA 58
           LP++ + S FS++            RV C  GS  ++VA+DLK  LHD LD+ G DT  A
Sbjct: 9   LPTTSFFSTFSKFQFCPPSFSSSCPRVICHGGSNVQHVATDLKFFLHDALDASGIDTAHA 68

Query: 59  REAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALIS 118
           REAREGF SQIKRL+++E+ETSI IN+ VDLG+TAL+IAAEDDSL+SHSSVPLPVDA ++
Sbjct: 69  REAREGFCSQIKRLTDIEKETSICINRHVDLGRTALYIAAEDDSLVSHSSVPLPVDAFVA 128

Query: 119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLT 178
           +LDDLS+ YC HY+  + SSPE  LESIER+L+  KGFRRT+A   L+EP++LYLHSVLT
Sbjct: 129 RLDDLSMDYCPHYTPSYDSSPEKFLESIERFLYVHKGFRRTSA--NLLEPQALYLHSVLT 186

Query: 179 HRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIIT 238
           HR+GS  MLSLIYSEILKMLR+WGL+ FD EI +P D++++P+GY K KSK+SDQ HI+T
Sbjct: 187 HRSGSPAMLSLIYSEILKMLRLWGLLYFDAEIFYPHDIFNVPKGYHKLKSKESDQAHIMT 246

Query: 239 VQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHR 297
              LL EIL NLK+AFWPF HD S++LFLRAA AANC+D+ +  G+SG Q+ASAKAARHR
Sbjct: 247 SGNLLVEILNNLKHAFWPFHHDHSKTLFLRAAHAANCVDRSDFVGESGSQIASAKAARHR 306

Query: 298 LERGVWNSVRFGDM 311
           L+RGVW +VRFGDM
Sbjct: 307 LDRGVWTTVRFGDM 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510483|ref|XP_003523967.1| PREDICTED: uncharacterized protein LOC100807902 [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/302 (65%), Positives = 239/302 (79%), Gaps = 7/302 (2%)

Query: 15  PYLSKFSRYRVTCC----SGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIK 70
           P+L+  S  RV  C    + + Q++VA+DLK  LHD L + G DTT AREARE F SQI 
Sbjct: 85  PFLASSSSSRVVACHVGSNSNAQQHVATDLKFVLHDALHAYGIDTTHAREAREQFCSQIG 144

Query: 71  RLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSH 130
           R +++E+ETSI IN+CVDLG+TAL+IAAEDDSL+SHSSVPLPVD  I++LDDLS+ YC H
Sbjct: 145 RFTDIEKETSICINRCVDLGRTALYIAAEDDSLVSHSSVPLPVDDFITRLDDLSMDYCPH 204

Query: 131 YSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLI 190
           YS  + SSPE  LESIER+L+  KGFRR NA    +EPR+LYLHSVLTHR+GSA MLSLI
Sbjct: 205 YSPEYDSSPEKFLESIERFLYIHKGFRRANA--NALEPRALYLHSVLTHRSGSAAMLSLI 262

Query: 191 YSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNL 250
           YSEILKMLR+W L+ FD EI FP D  +LP GY KQKSK+SDQ HI+T   LL EIL +L
Sbjct: 263 YSEILKMLRLWSLLYFDAEIFFPHDALTLPTGYHKQKSKESDQAHIMTSGNLLVEILSDL 322

Query: 251 KNAFWPFQHDRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFG 309
           K+AFWPFQHD +++LFLRAA AANC+D+ +  G+SG Q+ASAKAA+HRL+RGVW SVRFG
Sbjct: 323 KHAFWPFQHDHTKTLFLRAATAANCVDRSDFVGESGSQIASAKAAQHRLDRGVWTSVRFG 382

Query: 310 DM 311
           DM
Sbjct: 383 DM 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641242|gb|ACU20898.1| unknown [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/307 (63%), Positives = 236/307 (76%), Gaps = 12/307 (3%)

Query: 9   FCLPSSPYLSKFSRYRVTCCSGSQ---QKYVASDLKLALHDVLDSIGTDTTFAREAREGF 65
           FC P  P+ S+     V C  GS    QK+VA+DLK  LHD L   G +TT AREARE F
Sbjct: 23  FCPP--PFPSRV----VACHVGSNSNVQKHVATDLKFVLHDALHDSGINTTHAREAREHF 76

Query: 66  YSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSV 125
            SQI+R +++E+ TSI IN+CVDLG+TAL+IAAEDDSL+SHSSVPLPVD  I++LDDLS+
Sbjct: 77  CSQIRRFTDIEKGTSICINRCVDLGRTALYIAAEDDSLVSHSSVPLPVDDFITRLDDLSM 136

Query: 126 GYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAV 185
            YC HYS  + SSPE  LESIER+L+  KGFRR NA   ++EPR+LYLHSVLTHR+GSA 
Sbjct: 137 DYCPHYSPKYDSSPEKFLESIERFLYIHKGFRRANA--NVLEPRALYLHSVLTHRSGSAA 194

Query: 186 MLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEE 245
           MLSLIYSE+LKM R+W L+ FD EI F  D  +LP GY KQKSK+SDQ HI+T   LL E
Sbjct: 195 MLSLIYSEVLKMPRLWSLLHFDAEIFFSRDALTLPTGYHKQKSKESDQAHIMTSGNLLVE 254

Query: 246 ILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWN 304
           IL +LK+AFWPFQHD +++LFLRAA AANC+D+ +  G+SG Q+A AKAA+HRL+RGVW 
Sbjct: 255 ILNDLKHAFWPFQHDHTKTLFLRAATAANCVDRSDFVGESGSQIALAKAAQHRLDRGVWT 314

Query: 305 SVRFGDM 311
           S RFGDM
Sbjct: 315 SARFGDM 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543955|ref|XP_002513040.1| conserved hypothetical protein [Ricinus communis] gi|223548051|gb|EEF49543.1| conserved hypothetical protein [Ricinus communis]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 184/274 (67%), Positives = 221/274 (80%), Gaps = 2/274 (0%)

Query: 38  SDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIA 97
           +DLK  L D LDS G +T  AR++R+ F SQI++L+ +ER TSISIN+ VDL KTAL+IA
Sbjct: 66  NDLKFVLLDALDSSGINTAHARDSRKEFLSQIEKLTVIERGTSISINRRVDLAKTALYIA 125

Query: 98  AEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFR 157
           AEDDSLISHSSVPLPVD+ + +L DLS+G+CS YSS   SSP+  L+S+E YL+ KKGFR
Sbjct: 126 AEDDSLISHSSVPLPVDSFVDRLYDLSMGFCSAYSSSLLSSPDKFLDSLEDYLYVKKGFR 185

Query: 158 RTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLY 217
           R N   QL +PR+LYLHSVLTHRTGSA MLS+IYSEILK+LR+W L+DF+ EISFP D +
Sbjct: 186 RNNGGRQL-DPRALYLHSVLTHRTGSAAMLSVIYSEILKLLRMWSLLDFNCEISFPHDCH 244

Query: 218 SLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCID 277
            LP+GY KQKS +SDQ HI+T Q LLEEILRNLK  FWPFQ D S+S FLRAA AANCID
Sbjct: 245 GLPKGYHKQKSVESDQLHIMTTQTLLEEILRNLKETFWPFQQDYSKSSFLRAADAANCID 304

Query: 278 QLNSGDSGLQLASAKAARHRLERGVWNSVRFGDM 311
           + ++  SG QLASAKAA+HRL+RGVW SV FGDM
Sbjct: 305 R-STEQSGYQLASAKAAQHRLDRGVWTSVLFGDM 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057294|ref|XP_002299205.1| predicted protein [Populus trichocarpa] gi|222846463|gb|EEE84010.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 181/290 (62%), Positives = 218/290 (75%), Gaps = 23/290 (7%)

Query: 24  RVTCCSGSQQKY-VASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSIS 82
           RV C  GSQ    V +D + ALHD LDS G +TT AREAR+ F SQIKRLS++ERE SIS
Sbjct: 34  RVVCRGGSQPPPPVTTDFQFALHDALDSSGINTTHAREARQNFMSQIKRLSSIEREISIS 93

Query: 83  INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESV 142
           IN+ VDL KTAL+IAAEDDSLISHSSV LPVDA I +LDDLS+G+C++ SS  +SSPE +
Sbjct: 94  INRRVDLAKTALYIAAEDDSLISHSSVALPVDAFIERLDDLSMGFCTNNSSALKSSPEML 153

Query: 143 LESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIWG 202
           L+S+E++L+ KK                     VLTHR+GSAVML+LIYSEILK LR+W 
Sbjct: 154 LDSLEKFLYVKK---------------------VLTHRSGSAVMLALIYSEILKTLRLWS 192

Query: 203 LIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQHDRS 262
           L+DFD EI FP D + LPRGY KQKSK+SD  HI+T   LLE+ILRNLK AFWPFQHD +
Sbjct: 193 LLDFDCEIFFPHDNHGLPRGYHKQKSKESDHQHILTSLTLLEKILRNLKEAFWPFQHDHT 252

Query: 263 RSLFLRAARAANCIDQLNSGD-SGLQLASAKAARHRLERGVWNSVRFGDM 311
           +SLFL+AA AA+C+D   + + SG QLASAKAA+HRL+RGVW SV FGDM
Sbjct: 253 KSLFLQAAHAADCVDISKTFEGSGAQLASAKAAQHRLDRGVWTSVHFGDM 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072891|ref|XP_002303930.1| predicted protein [Populus trichocarpa] gi|222841362|gb|EEE78909.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/295 (56%), Positives = 216/295 (73%), Gaps = 9/295 (3%)

Query: 24  RVTCCSGSQQ--KYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSI 81
           RV C  G  +    V  D K ALHD LDS G DTT AREAR+ F SQIK LS +ERE SI
Sbjct: 35  RVVCRGGGSELPPPVTPDFKFALHDALDSSGVDTTHAREARQNFMSQIKGLSRIEREVSI 94

Query: 82  SINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSG--FRSSP 139
           SIN+ VDL KTA++I+AED +L+S SS+ LPVD  I +L DL++ +C    SG   R+SP
Sbjct: 95  SINRRVDLAKTAIYISAEDFALMSQSSLALPVDPFIERLFDLTMEFCR---SGKVLRASP 151

Query: 140 ESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLR 199
           E++L+S+ ++L+ +K F+R+N  ++L EP  LYLH+VLT+++GSA ML+LIYSEILK+LR
Sbjct: 152 EALLDSLYKFLYVEKDFQRSNVISRL-EPHPLYLHAVLTYQSGSAYMLALIYSEILKVLR 210

Query: 200 IWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQH 259
            W L+DFD EI FP D Y LPRGY KQKS +SD PHI+TVQ LLEEIL+N+K AFWPF+H
Sbjct: 211 FWSLLDFDCEIFFPHDRYGLPRGYHKQKSAESDHPHILTVQTLLEEILKNVKEAFWPFRH 270

Query: 260 DRSRSLFLRAARAANCIDQLN-SGDSGLQLASAKAARHRLERGVWNSVRFGDMSM 313
           D+++SLFLRA  A  C D+ N   +SG QL SAK++  RL+RG   S+  GD+ +
Sbjct: 271 DQTKSLFLRAVHAVLCTDRSNVVEESGFQLESAKSSHRRLDRGTLTSLHLGDLRL 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445168|ref|XP_004140345.1| PREDICTED: uncharacterized protein LOC101204123 [Cucumis sativus]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/219 (71%), Positives = 181/219 (82%), Gaps = 1/219 (0%)

Query: 59  REAREGFYSQIKRLSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALIS 118
           +EAR+GF SQI  LS +ER+TSISIN+ VDL K AL+IAAEDDSL+SHSSVPLPVDA I 
Sbjct: 2   QEARKGFLSQIHYLSKIERDTSISINRRVDLAKAALYIAAEDDSLVSHSSVPLPVDAFIH 61

Query: 119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLT 178
           +L DLS+GYC+HY S F SSPE  LESIERY++  KGFRRT ++ Q  EPR+LYLH+VLT
Sbjct: 62  RLSDLSMGYCTHYKSSFNSSPEIFLESIERYMYVMKGFRRTGSKAQ-SEPRALYLHTVLT 120

Query: 179 HRTGSAVMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIIT 238
           HRTGSA +LSLIYSEILKMLR+W L+DFDVEI  P D YSLP GY K KSK+SDQPHI+T
Sbjct: 121 HRTGSAALLSLIYSEILKMLRLWSLLDFDVEIYHPHDDYSLPMGYHKLKSKESDQPHIMT 180

Query: 239 VQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCID 277
            Q LL EIL NLK +FWPFQ ++SRSLFLRAA AANC D
Sbjct: 181 TQTLLVEILTNLKESFWPFQQNQSRSLFLRAADAANCSD 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481905|gb|ABK92887.1| unknown [Populus trichocarpa]

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/261 (58%), Positives = 195/261 (74%), Gaps = 8/261 (3%)

Query: 24  RVTCCSGSQQ--KYVASDLKLALHDVLDSIGTDTTFAREAREGFYSQIKRLSNVERETSI 81
           RV C  G  +    V  D K ALHD LDS G DTT AREAR+ F SQIK LS +ERE SI
Sbjct: 35  RVVCRGGGSELPPPVTPDFKFALHDALDSSGVDTTHAREARQNFMSQIKGLSRIEREVSI 94

Query: 82  SINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSG--FRSSP 139
           SIN+ VDL KTA++I+AED +L+S SS+ LPVD  I +L DL++ +C    SG   R+SP
Sbjct: 95  SINRRVDLAKTAIYISAEDFALMSQSSLALPVDPFIERLFDLTMEFCR---SGKVLRASP 151

Query: 140 ESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLR 199
           E++L+S+ ++L+ +K F+R+N  ++L EP  LYLH+VLT+++GSA ML+LIYSEILK+LR
Sbjct: 152 EALLDSLYKFLYVEKDFQRSNVISRL-EPHPLYLHAVLTYQSGSAYMLALIYSEILKVLR 210

Query: 200 IWGLIDFDVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILRNLKNAFWPFQH 259
            W L+DFD EI FP D Y LPRGY KQKS +SD PHI+TVQ LLEEIL+N+K AFWPF+H
Sbjct: 211 FWSLLDFDCEIFFPHDRYGLPRGYHKQKSAESDHPHILTVQTLLEEILKNVKEAFWPFRH 270

Query: 260 DRSRSLFLRAARAANCIDQLN 280
           D+++SLFLRA  A  C D+ N
Sbjct: 271 DQTKSLFLRAVHAVLCTDRSN 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2134791	453	AT4G19160 [Arabidopsis thalian	0.178	0.123	0.423	1.7e-05

TAIR|locus:2134791 AT4G19160 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query:   142 VLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRI 200
             VLE++   LFD +GF+RT+     ++P + YLHSVL  R  +A ++S+IY E+ K L +
Sbjct:   200 VLEAVNTVLFDLRGFKRTSIT---LDPENSYLHSVLNCRCSTAFLISVIYIEVCKRLNV 255

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030921001 SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (423 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
pfam13369	154	pfam13369, Transglut_core2, Transglutaminase-like	3e-07
COG2912	269	COG2912, COG2912, Uncharacterized conserved protei	6e-05

>gnl|CDD|222080 pfam13369, Transglut_core2, Transglutaminase-like superfamily

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 114 DALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYL 173
           + +++QLD L               P   LE++ R L+ + GF          +P + YL
Sbjct: 1   EQVLAQLDAL-AAEVRARLPAEAD-PLEKLEALNRLLYGELGFSG--NSEDYYDPDNSYL 56

Query: 174 HSVLTHRTGSAVMLSLIYSEILKMLRIWGLIDFDVE-ISFP 213
             VL  R G  + L+++Y E+ + L         +E ++FP
Sbjct: 57  DKVLERRRGIPISLAILYLELARRL------GLPLEGVNFP 91

Length = 154

>gnl|CDD|225464 COG2912, COG2912, Uncharacterized conserved protein [Function unknown]

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 26/171 (15%)

Query: 106 HSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQL 165
                L    L+++LD L V       S      E  LE++ R  +   GF  +      
Sbjct: 25  AIRPDLDPARLLNELDRL-VRLARKRIS-ELLPQEEQLEALLRLFYGDWGF--SGDEEDY 80

Query: 166 IEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML---------------------RIWGLI 204
            +PR+LYL+ VL  R G  V L+++  EI + L                         + 
Sbjct: 81  FDPRNLYLNQVLQRRQGIPVSLAVVLLEIARRLDLPLYGVNFPTQLLLRAEVEDEPLLID 140

Query: 205 DFDVEISFPLDLYSLPRGYQKQKSKDSDQP-HIITVQMLLEEILRNLKNAF 254
            F+       +L    +G     ++   +     + + +L  +LRNLK A 
Sbjct: 141 PFNGGTLSQHELQEWLKGTIGPSAELLPEDLKQASNREILSRLLRNLKAAL 191

Length = 269

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PRK10941	269	hypothetical protein; Provisional	100.0
COG2912	269	Uncharacterized conserved protein [Function unknow	99.97
PF13369	152	Transglut_core2: Transglutaminase-like superfamily	99.93
PF01841	113	Transglut_core: Transglutaminase-like superfamily;	91.47

>PRK10941 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-43  Score=330.84  Aligned_cols=210  Identities=17%  Similarity=0.095  Sum_probs=187.7

Q ss_pred             cCCCCcHHHHHHHHhhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCC
Q 021395           83 INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR  162 (313)
Q Consensus        83 ~de~~dL~eaAL~IA~e~~P~~s~s~v~l~v~~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~  162 (313)
                      .+++++|.+||++||++.+|       ++|++++..+||+|+.+++.  .++...++.+++++||++||++|||+||.. 
T Consensus         8 ~~~~~~L~e~al~ia~~~~p-------dl~~~~~~~~L~~l~~~~~~--~l~~~~~~~~~l~~L~~~fy~~lgF~Gn~~-   77 (269)
T PRK10941          8 EFNKAPLCEGMILASQAIRR-------DFPSQDVYDELERLVSLARE--EISQLLPQDEQLEKLIALFYGEWGFGGASG-   77 (269)
T ss_pred             cccCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHH--hccccCCHHHHHHHHHHHHHHHhCCCCCcc-
Confidence            47899999999999999999       99999999999999999999  677888999999999999999999999999 


Q ss_pred             CCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHcCCC--cc--C-----------------C-CCceeeccccccccc
Q 021395          163 NQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--I-----------------D-FDVEISFPLDLYSLP  220 (313)
Q Consensus       163 ~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRLGlp--GV--~-----------------d-f~G~il~~~d~~~l~  220 (313)
                       +||+|+|||||+||++|+|+|||||+||++||+|+|+|  ||  |                 | |+|+++++++|+.+.
T Consensus        78 -~Y~~p~ns~L~~VL~~R~G~PisL~il~l~iA~~lglp~~gV~fPghfllr~~~~d~~~~~IDPf~G~~L~~~~l~~~L  156 (269)
T PRK10941         78 -VYRLSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWL  156 (269)
T ss_pred             -ccCCchhhHHHHHHHccCCCcHHHHHHHHHHHHHcCCCeeeeecCchheeeeecCCCceEEEeCCCCCCCCHHHHHHHH
Confidence             99999999999999999999999999999999999999  87  2                 1 368888899999888


Q ss_pred             cccccCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhccccCCcc------hhhhhchhhHHHHhhhcCCCchhhhhHhHHH
Q 021395          221 RGYQKQKSKD-SDQPHIITVQMLLEEILRNLKNAFWPFQHDRS------RSLFLRAARAANCIDQLNSGDSGLQLASAKA  293 (313)
Q Consensus       221 rg~~~~~~~~-~~~~~~~s~r~IL~RmL~NLk~~y~~~~~~~s------~~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~  293 (313)
                      ++..++..+. ..++.+++|++||.|||+|||.+|+++++...      +.+.|.|.+..+.+||+.   .++||+|.+.
T Consensus       157 ~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGl---l~~qL~c~~~  233 (269)
T PRK10941        157 KGNISPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGL---IYAQLDCEHV  233 (269)
T ss_pred             HhhcCCcccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCCcHH
Confidence            7776664332 34788999999999999999999999999554      566666777778999999   9999999999


Q ss_pred             HHHHHHhcccccC
Q 021395          294 ARHRLERGVWNSV  306 (313)
Q Consensus       294 a~~~ler~~w~~~  306 (313)
                      |..|||.+|=-++
T Consensus       234 A~~DL~~fl~~~P  246 (269)
T PRK10941        234 ALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999998874443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=2.1e-32  Score=255.69  Aligned_cols=206  Identities=24%  Similarity=0.211  Sum_probs=180.4

Q ss_pred             CCcHHHHHHHHhhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCc
Q 021395           86 CVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQL  165 (313)
Q Consensus        86 ~~dL~eaAL~IA~e~~P~~s~s~v~l~v~~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y  165 (313)
                      ...+.++++++|+..+|       ++|+..+..+++.++..++.  .++....+++++++++++||++|||+||.+  .|
T Consensus        12 ~~~~~e~~l~~a~~~~~-------~~dp~~~~~~l~~lV~~a~~--~i~~~~~~~~~~~~l~~~fy~d~gF~~~~~--~y   80 (269)
T COG2912          12 EAPLKEGALLAAQAIRP-------DLDPARLLNELDRLVRLARK--RISELLPQEEQLEALLRLFYGDWGFSGDEE--DY   80 (269)
T ss_pred             hccchhHHHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHH--HhhhccChhhHHHHHHHHHHHHcCCCCCcc--cc
Confidence            45567779999999999       99999999999999999988  677778889999999999999999999999  99


Q ss_pred             CCCccccHHHHHhcccCchHHHHHHHHHHHHHcCCC--cc--CC-----------------CCceeeccccccccccccc
Q 021395          166 IEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--ID-----------------FDVEISFPLDLYSLPRGYQ  224 (313)
Q Consensus       166 ~dp~NS~L~~VLerR~GiPIsLsiIYleVArRLGlp--GV--~d-----------------f~G~il~~~d~~~l~rg~~  224 (313)
                      ++|+|+|+++|+++|+|+||+||+||+++|+++|+|  ||  |+                 |+|++++.++|+.+..+..
T Consensus        81 ~~~~n~~l~~Vl~~R~G~pvsLa~vll~ia~~l~lpl~gV~FP~~flLR~~~~~~~~~idP~ng~~l~~~~l~~~l~~~~  160 (269)
T COG2912          81 FDPRNLYLNQVLQRRQGIPVSLAVVLLEIARRLDLPLYGVNFPTQLLLRAEVEDEPLLIDPFNGGTLSQHELQEWLKGTI  160 (269)
T ss_pred             cCchhhhHHHHHHHcCCCcchHHHHHHHHHHHcCCCCCccCCccceeEeeccCCCceeeCCCCCCcccHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999  87  21                 3577888899998887776


Q ss_pred             cCCCCCC-CCCCCCCHHHHHHHHHHHHHHHhccccCCcc------hhhhhchhhHHHHhhhcCCCchhhhhHhHHHHHHH
Q 021395          225 KQKSKDS-DQPHIITVQMLLEEILRNLKNAFWPFQHDRS------RSLFLRAARAANCIDQLNSGDSGLQLASAKAARHR  297 (313)
Q Consensus       225 ~~~~~~~-~~~~~~s~r~IL~RmL~NLk~~y~~~~~~~s------~~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~a~~~  297 (313)
                      ++.++.- ..+..+++++|+.||++|||++|.+++++..      +.+-|.|.++....||+.   .|+|++|.+.|..|
T Consensus       161 ~~~ael~~~~L~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGl---iY~ql~c~~vAl~d  237 (269)
T COG2912         161 GPSAELLPEDLKQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGL---IYAQLGCYHVALED  237 (269)
T ss_pred             CcHhhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHH---HHHhcCCchhhHHH
Confidence            6654432 3567889999999999999999999999664      566666777888999998   99999999999999


Q ss_pred             HHhccccc
Q 021395          298 LERGVWNS  305 (313)
Q Consensus       298 ler~~w~~  305 (313)
                      |++.+=..
T Consensus       238 l~~~~~~~  245 (269)
T COG2912         238 LSYFVEHC  245 (269)
T ss_pred             HHHHHHhC
Confidence            99866433

>PF13369 Transglut_core2: Transglutaminase-like superfamily

Probab=99.93  E-value=3.6e-26  Score=197.73  Aligned_cols=130  Identities=23%  Similarity=0.360  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHH
Q 021395          115 ALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEI  194 (313)
Q Consensus       115 ~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleV  194 (313)
                      ++.++||+||.++++  .++...+|.+++++|+++||+++||+|+..  +|++|+|++|++||++|+|+||+||+||++|
T Consensus         2 ~~~~~Ld~la~~v~~--~~~~~~~~~~~l~al~~~l~~~~gF~~~~~--~y~~~~n~~l~~vL~~r~G~Pi~L~ily~~v   77 (152)
T PF13369_consen    2 AVLQRLDALAAQVRQ--RLPARASPREKLEALNDVLYQELGFSGNSE--NYYDPENSFLHKVLERRRGIPISLAILYLEV   77 (152)
T ss_pred             hHHHHHHHHHHHHHH--HccccCCHHHHHHHHHHHHHHHcCCCCCcc--ccCChHhhhHHHHHhcCCCCcHHHHHHHHHH
Confidence            678999999999999  577778999999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHcCCC--cc--C--------C--------C-CceeeccccccccccccccCCCCCCCCCCCCCHHHHHHHHHH
Q 021395          195 LKMLRIW--GL--I--------D--------F-DVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILR  248 (313)
Q Consensus       195 ArRLGlp--GV--~--------d--------f-~G~il~~~d~~~l~rg~~~~~~~~~~~~~~~s~r~IL~RmL~  248 (313)
                      |+|+|++  ||  |        +        | +|++++.++|+.+..+..++......++.++++++||.||+|
T Consensus        78 a~rlGl~~~~v~~Pgh~l~r~~~~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~~~~~~~~l~p~s~~eil~R~l~  152 (152)
T PF13369_consen   78 ARRLGLPAEPVNFPGHFLVRVRSDGEFYIDPFNGGRLLSREELERLLSRMGGPAELDPEYLKPASPREILLRMLR  152 (152)
T ss_pred             HHHcCCeEEEEecCCEEEEEEecCCcEEEccCCCCccCCHHHHHHHHHhccCcccCCHHHhCCCCHHHHHHHHhC
Confidence            9999999  65  2        1        2 377777788877776654441112346789999999999985

>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i

Probab=91.47  E-value=0.03  Score=44.55  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=46.2

Q ss_pred             CCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHcCCC
Q 021395          135 FRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW  201 (313)
Q Consensus       135 ~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRLGlp  201 (313)
                      ...++.+++++|..++-....|. +    .+..+.......||.++.|.+.-.+.++..++|.+|||
T Consensus        10 ~~~~~~~~~~~i~~~v~~~~~y~-~----~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr~~Gip   71 (113)
T PF01841_consen   10 NSKTPLEKAKAIYDWVRSNIRYD-D----PNYSPGPRDASEVLRSGRGDCEDYASLFVALLRALGIP   71 (113)
T ss_dssp             TSHCHHCCCCCCCCCCCCCCCEC------TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHHHHT--
T ss_pred             CCCCHHHHHHHHHHHHHhCcEEe-C----CCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHhhCCCc
Confidence            45666677777777776666665 1    23344455589999999999999999999999999999

e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 57/229 (24%)

Query: 62  REGFYSQIKR-LSNVERETSISINKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQL 120
           R   Y ++++ L  +    ++ I+  +  GKT + +                   +  ++
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS------------YKVQCKM 180

Query: 121 DD----LSVGYCSHYSSGFRSSPESVLESIER--YLFDKKGFRRTNARNQLIEPRSLYLH 174
           D     L++  C+        SPE+VLE +++  Y  D        +R+       L +H
Sbjct: 181 DFKIFWLNLKNCN--------SPETVLEMLQKLLYQIDPNW----TSRSDHSSNIKLRIH 228

Query: 175 SVLTHRTGSAVMLSLIYSEILKMLR-IWGLIDFDVEISFPLDLYSLPRGYQKQK----SK 229
           S+        ++ S  Y   L +L  +      + +     +L          K    ++
Sbjct: 229 SIQAEL--RRLLKSKPYENCLLVLLNVQ-----NAKAWNAFNLSC--------KILLTTR 273

Query: 230 DSDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQ 278
                 +            +L +       D  +SL     +  +C  Q
Sbjct: 274 FKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQ 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
3isr_A	293	Transglutaminase-like enzymes, putative cysteine;	89.97
3kd4_A	506	Putative protease; structural genomics, joint cent	89.55

>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}

Probab=89.97  E-value=0.64  Score=43.29  Aligned_cols=72  Identities=13%  Similarity=0.142  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHc
Q 021395          119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML  198 (313)
Q Consensus       119 ~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRL  198 (313)
                      ++.++|.++..     ...++.+++++|++++.++..|.....  .    ...-...+|+.|+|.+--.+.+++.++|.+
T Consensus       127 ~i~~~A~~~~~-----~~~~~~~~~~ai~~~v~~~~~Y~~~~~--~----~~~~a~~~l~~~~G~C~d~A~l~val~Ra~  195 (293)
T 3isr_A          127 KLQKLAYKEFG-----KIENVYSKVLAITDWIYNNVEYISGST--N----SQTSAFDTITERAGVCRDFAHLGIALCRAL  195 (293)
T ss_dssp             GSHHHHHHHHT-----TCCSHHHHHHHHHHHHHHHSEECTTSC--C----TTCCHHHHHHHCEECHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhhcEEeccCC--C----CCCCHHHhhcCCcEehHHHHHHHHHHHHHC
Confidence            45667777643     234567899999999999887765433  1    112346799999999999999999999999


Q ss_pred             CCC
Q 021395          199 RIW  201 (313)
Q Consensus       199 Glp  201 (313)
                      |||
T Consensus       196 GIP  198 (293)
T 3isr_A          196 SIP  198 (293)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            999

>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}

Probab=89.55  E-value=0.86  Score=45.30  Aligned_cols=76  Identities=8%  Similarity=0.056  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHc
Q 021395          119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML  198 (313)
Q Consensus       119 ~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRL  198 (313)
                      .+.+++.++..     +..++.+++++|-.++-++..|.+...  .+......-...||++|.|.+...+.+++.++|.+
T Consensus       229 ~i~~~a~~l~~-----~~~~~~ek~~~iy~~V~~~i~y~~~~~--~~~g~~~~~a~~vl~~~~G~C~d~a~Ll~AllRa~  301 (506)
T 3kd4_A          229 ESKTFAQFLTD-----KSGNEQEKVNIIRDHILNNLSTCPIPM--AMTGYTVRDIDTVLRSAYGTPLEIAQLLNVMLNAA  301 (506)
T ss_dssp             HHHHHHHHHHS-----SCSSHHHHHHHHHHHHHHHCEECCCCG--GGGTTCCCCHHHHHHHTEECHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhccEecceec--ccCCCCCCCHHHHHHhCCcchHHHHHHHHHHHHHC
Confidence            44455555533     346788999999999888877665332  22211223478999999999999999999999999


Q ss_pred             CCC
Q 021395          199 RIW  201 (313)
Q Consensus       199 Glp  201 (313)
                      |||
T Consensus       302 GIp  304 (506)
T 3kd4_A          302 GIP  304 (506)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            999

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00