Citrus Sinensis ID: 021425

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVIIDPL
ccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHcHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHccHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHc
mqgipdgagiRSTVWKLLLVylppdrglwpseLAKKRSQykhfkddllvnpseitrrldkstiyeseewkcessgflsrseithdehplslgkssiwnqffqdseIMEQIDRDvkrthpdmhffsgdssfatSNQEALKNILIVFAklnpgiryvQGMNEILAPLyyvfksdpdeefsvsaeaDTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDtllsdpdgpqvgLMFFLFIFSCLILLILWKDAMFLELRNVIIDPL
mqgipdgagiRSTVWKLLLVYLPPDRGLWPSELAKKRsqykhfkddllvnpseitrrldkstiyeseewkcesSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVIIDPL
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGlmfflfifsclillilWKDAMFLELRNVIIDPL
********GIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKC********************GKSSIWNQFFQDSEIMEQI************FF**********QEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVII***
MQGI***AGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFL**************GKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVIIDPL
MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVIIDPL
*****DGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNP************************************PL*LGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVIIDPL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
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MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMFLELRNVIIDPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
Q8R3D1400 TBC1 domain family member yes no 0.903 0.705 0.326 2e-38
Q9NVG8400 TBC1 domain family member yes no 0.493 0.385 0.468 5e-37
Q9URY3 619 TBC domain-containing pro yes no 0.576 0.290 0.398 3e-31
Q92609 795 TBC1 domain family member no no 0.820 0.322 0.286 2e-29
Q80XQ2 815 TBC1 domain family member no no 0.820 0.314 0.284 8e-28
O59737514 GTPase-activating protein no no 0.788 0.478 0.279 9e-19
Q54VM3 1173 TBC1 domain family member no no 0.509 0.135 0.305 2e-17
Q8WUA7517 TBC1 domain family member no no 0.743 0.448 0.253 5e-17
Q95LL3505 TBC1 domain family member N/A no 0.759 0.469 0.267 5e-17
Q9NU19505 TBC1 domain family member no no 0.759 0.469 0.267 6e-17
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1 Back     alignment and function desciption
 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 170/352 (48%), Gaps = 70/352 (19%)

Query: 3   GIPDGAGIRSTVWKLLLVYLP-----------PDRGLWPSELAK-------KRSQYKHFK 44
           GIP   G+R   WK+LL YLP             RGL+   L +        ++    F+
Sbjct: 33  GIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRGLYSQFLREMIIQPGIAKANMGVFR 92

Query: 45  DDLL-----VNPS------------EITRRLDKSTIYESEEWKCESSGFLSRSEITHDEH 87
           +D+      +NP+            E+  ++DK          C    F  R+     E+
Sbjct: 93  EDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDV-----RRLCPDISFFQRAT----EY 143

Query: 88  PLSLGKSSIWNQFFQDSEIMEQI---DRDVKRTHPDM------HFFSGDSSF-------- 130
           P  L      N+F    + +EQ     + V R    +      H  S  S+         
Sbjct: 144 PCLLILDP-QNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSAPSALNEYEVLPN 202

Query: 131 -ATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCF 189
              ++ E ++ IL ++AKLNPGI YVQGMNEI+ PLYY F +DP+ E+   AEADTFFCF
Sbjct: 203 GCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCF 262

Query: 190 VELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWI 249
             L++  RDNF + LD+S  GI   + ++   LK+ D EL+  L+  + + PQF+AFRW+
Sbjct: 263 TNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQS-IKPQFFAFRWL 321

Query: 250 TLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKDAMF 301
           TLLL+QEF   D + IWD+L +D      G  F   +  C  +LIL ++ + 
Sbjct: 322 TLLLSQEFLLPDVIRIWDSLFAD------GNRFDFLLLVCCAMLILIREQLL 367
May act as a GTPase-activating protein for Rab family protein(s).
Mus musculus (taxid: 10090)
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 Back     alignment and function description
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4 Back     alignment and function description
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1 Back     alignment and function description
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2 Back     alignment and function description
>sp|O59737|GYP1_SCHPO GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp1 PE=3 SV=1 Back     alignment and function description
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1 Back     alignment and function description
>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2 Back     alignment and function description
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1 Back     alignment and function description
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
255554050 468 conserved hypothetical protein [Ricinus 0.932 0.621 0.834 1e-144
224060367356 predicted protein [Populus trichocarpa] 0.932 0.817 0.820 1e-142
225433604 437 PREDICTED: TBC1 domain family member 13 0.923 0.659 0.826 1e-138
449442333 446 PREDICTED: TBC1 domain family member 13- 0.919 0.643 0.815 1e-138
357462717 432 TBC1 domain family member [Medicago trun 0.926 0.668 0.795 1e-137
224128968339 predicted protein [Populus trichocarpa] 0.926 0.852 0.816 1e-137
356512467 443 PREDICTED: TBC1 domain family member 13- 0.942 0.663 0.77 1e-134
82621142387 RabGAP/TBC domain-containing protein-lik 0.878 0.708 0.806 1e-130
297804944 452 RabGAP/TBC domain-containing protein [Ar 0.932 0.643 0.743 1e-129
42572891408 RabGAP/TBC domain-containing protein [Ar 0.916 0.700 0.762 1e-129
>gi|255554050|ref|XP_002518065.1| conserved hypothetical protein [Ricinus communis] gi|223542661|gb|EEF44198.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/296 (83%), Positives = 268/296 (90%), Gaps = 5/296 (1%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
           QGIPDGAGIRSTVWKLLL YLP DR LW SELAKKRSQY+HFK++LL+NPSEI RRL+KS
Sbjct: 139 QGIPDGAGIRSTVWKLLLGYLPTDRSLWSSELAKKRSQYRHFKEELLMNPSEIARRLEKS 198

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
           T  E++E KCE+ G LSRSEITH EHPLSLGK+SIWNQFFQD+EI+EQIDRDVKRTHPDM
Sbjct: 199 TGCENDEPKCENRGVLSRSEITHGEHPLSLGKTSIWNQFFQDTEIIEQIDRDVKRTHPDM 258

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSA 181
           HFF GDSSFA SNQ+AL+NILIVFAKLNPGIRYVQGMNEILAPL+YVF++DPDEE +  A
Sbjct: 259 HFFCGDSSFAKSNQDALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRNDPDEEMAACA 318

Query: 182 EADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNP 241
           EADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNP
Sbjct: 319 EADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNP 378

Query: 242 QFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWK 297
           QFYAFRWITLLLTQEFNFADSLHIWDTLLSDP+GPQ  L+       C  +LIL +
Sbjct: 379 QFYAFRWITLLLTQEFNFADSLHIWDTLLSDPEGPQETLLRI-----CCTMLILIR 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224060367|ref|XP_002300164.1| predicted protein [Populus trichocarpa] gi|222847422|gb|EEE84969.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433604|ref|XP_002271213.1| PREDICTED: TBC1 domain family member 13 [Vitis vinifera] gi|298205157|emb|CBI17216.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442333|ref|XP_004138936.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus] gi|449505611|ref|XP_004162521.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357462717|ref|XP_003601640.1| TBC1 domain family member [Medicago truncatula] gi|355490688|gb|AES71891.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|224128968|ref|XP_002328857.1| predicted protein [Populus trichocarpa] gi|222839287|gb|EEE77624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512467|ref|XP_003524940.1| PREDICTED: TBC1 domain family member 13-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|82621142|gb|ABB86259.1| RabGAP/TBC domain-containing protein-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|297804944|ref|XP_002870356.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316192|gb|EFH46615.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42572891|ref|NP_974542.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332657919|gb|AEE83319.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2119435449 AT4G13730 [Arabidopsis thalian 0.884 0.614 0.775 1.3e-118
DICTYBASE|DDB_G0269052 604 DDB_G0269052 [Dictyostelium di 0.602 0.311 0.542 2.9e-66
UNIPROTKB|E1BXI8399 TBC1D13 "Uncharacterized prote 0.435 0.340 0.525 2.3e-60
ZFIN|ZDB-GENE-080204-86414 tbc1d13 "TBC1 domain family, m 0.442 0.333 0.496 5.9e-60
UNIPROTKB|F1MXD4399 TBC1D13 "Uncharacterized prote 0.503 0.393 0.468 2.5e-59
RGD|1591937400 Tbc1d13 "TBC1 domain family, m 0.435 0.34 0.525 3.2e-59
UNIPROTKB|Q9NVG8400 TBC1D13 "TBC1 domain family me 0.435 0.34 0.518 6.6e-59
WB|WBGene00009726459 tbc-13 [Caenorhabditis elegans 0.435 0.296 0.529 1.1e-58
MGI|MGI:2385326400 Tbc1d13 "TBC1 domain family, m 0.435 0.34 0.518 1.7e-58
UNIPROTKB|F1RR65400 TBC1D13 "Uncharacterized prote 0.435 0.34 0.518 1.7e-58
TAIR|locus:2119435 AT4G13730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 214/276 (77%), Positives = 246/276 (89%)

Query:     2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
             QG+PD AGIRS VWKLLL YL PDR LW SELAKKRSQYK FK++LL+NPSE+TR++DKS
Sbjct:   123 QGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAKKRSQYKQFKEELLMNPSEVTRKMDKS 182

Query:    62 TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                +S + K ES G LSRSEITH++HPLSLG +S+WN FF+D+E++EQI+RDV RTHPDM
Sbjct:   183 KGGDSNDPKIESPGALSRSEITHEDHPLSLGTTSLWNNFFKDTEVLEQIERDVMRTHPDM 242

Query:   122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSA 181
             HFFSGDS+ A SNQ+ALKNIL +FAKLNPGIRYVQGMNEILAP++Y+FK+DPD+  +  A
Sbjct:   243 HFFSGDSAVAKSNQDALKNILTIFAKLNPGIRYVQGMNEILAPIFYIFKNDPDKGNAAYA 302

Query:   182 EADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNP 241
             E+D FFCFVEL+SGFRDNFCQQLDNSVVGIR TITRLS LLK HDEELWRHLEVTTK+NP
Sbjct:   303 ESDAFFCFVELMSGFRDNFCQQLDNSVVGIRYTITRLSLLLKHHDEELWRHLEVTTKINP 362

Query:   242 QFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQ 277
             QFYAFRWITLLLTQEFNF +SLHIWDTLLSDP+GPQ
Sbjct:   363 QFYAFRWITLLLTQEFNFVESLHIWDTLLSDPEGPQ 398
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
DICTYBASE|DDB_G0269052 DDB_G0269052 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXI8 TBC1D13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-86 tbc1d13 "TBC1 domain family, member 13" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXD4 TBC1D13 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1591937 Tbc1d13 "TBC1 domain family, member 13" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVG8 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00009726 tbc-13 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:2385326 Tbc1d13 "TBC1 domain family, member 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR65 TBC1D13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.3438.1
hypothetical protein (356 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 8e-38
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 1e-34
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 7e-23
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  132 bits (335), Expect = 8e-38
 Identities = 64/198 (32%), Positives = 91/198 (45%), Gaps = 29/198 (14%)

Query: 102 QDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161
           +DS   EQI++DV RT P   FF          Q+ L+ IL  ++  NP + Y QGMN I
Sbjct: 34  EDSPDEEQIEKDVPRTFPHHFFFKNGE-----GQQQLRRILKAYSIYNPDVGYCQGMNFI 88

Query: 162 LAPLYYVFKSDPDEEFSVSAEADTFFCFVELLS-GFRDNFCQQLDNSVVGIRSTITRLSQ 220
            APL  V             E + F+CFV LL    RD F         G++  +    +
Sbjct: 89  AAPLLLVVLD----------EEEAFWCFVSLLEYLLRDFFLPSFP----GLQRDLYVFEE 134

Query: 221 LLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGL 280
           LLK+HD EL++HL+    ++P  +A +W   L  +E      L +WD  L        G 
Sbjct: 135 LLKKHDPELYKHLQ-KLGLDPSLFASKWFLTLFARELPLETVLRLWDLFLE-------GG 186

Query: 281 MFFLFIFSCLILLILWKD 298
            FFLF    L +L  ++ 
Sbjct: 187 KFFLFRV-ALAILKRFRK 203

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.97
KOG2224781 consensus Uncharacterized conserved protein, conta 99.97
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.97
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.94
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.92
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.92
KOG2595 395 consensus Predicted GTPase activator protein [Sign 99.92
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.92
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.81
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.65
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.59
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.44
KOG1648813 consensus Uncharacterized conserved protein, conta 98.06
PF149611296 BROMI: Broad-minded protein 96.55
KOG2224781 consensus Uncharacterized conserved protein, conta 86.41
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-62  Score=410.02  Aligned_cols=282  Identities=54%  Similarity=0.940  Sum_probs=252.5

Q ss_pred             CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (312)
Q Consensus         1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      ++|+|+++++|+.+|++|||++|+++..|...++++|..|..+.++....|......                  .-..+
T Consensus        33 ~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~------------------~~v~~   94 (370)
T KOG4567|consen   33 FYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNS------------------KKVDS   94 (370)
T ss_pred             hcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccc------------------ccccc
Confidence            479999888999999999999999999999999999999999999988766531110                  00111


Q ss_pred             ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcc----------------------hhhHHHH
Q 021425           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFA----------------------TSNQEAL  138 (312)
Q Consensus        81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~----------------------~~~~~~L  138 (312)
                      ..+..++||+.++.+.|++++++.+++.||++||.||.|+..+|+......                      +-.....
T Consensus        95 ~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~  174 (370)
T KOG4567|consen   95 NDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAA  174 (370)
T ss_pred             CcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHH
Confidence            225789999999999999999999999999999999999999999865443                      1233446


Q ss_pred             HHHHHHHHHHCCCCCCCCChHHHHHHHHHHHcCCCCccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHH
Q 021425          139 KNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRL  218 (312)
Q Consensus       139 ~~iL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~~~~~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (312)
                      .|||++||+.||.+||+||||+|+||+++|+.+|++.++..++|+|||.||..+|.+++++|...+|++..|++..+..+
T Consensus       175 erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~  254 (370)
T KOG4567|consen  175 ERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRL  254 (370)
T ss_pred             HHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 021425          219 SQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFLFIFSCLILLILWKD  298 (312)
Q Consensus       219 ~~ll~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~~~~~~~~~~il~~~~~a~l~~~~~~  298 (312)
                      ..+|+++|-+||+||++. ++.|++|++||+.+|++.+||+++++||||.+|+++.++ ++++++    |+||++..|+.
T Consensus       255 ~~~lk~~D~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rf-d~Ll~i----Ccsmlil~Re~  328 (370)
T KOG4567|consen  255 SELLKKHDEELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRF-DFLLYI----CCSMLILVRER  328 (370)
T ss_pred             HHHHHHhhHHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhh-HHHHHH----HHHHHHHHHHH
Confidence            999999999999999997 999999999999999999999999999999999998763 555555    99999999999


Q ss_pred             HHHHHHhh
Q 021425          299 AMFLELRN  306 (312)
Q Consensus       299 ll~~~~~~  306 (312)
                      |++-|+..
T Consensus       329 il~~DF~~  336 (370)
T KOG4567|consen  329 ILEGDFTV  336 (370)
T ss_pred             HHhcchHH
Confidence            99988764

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 1e-17
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 4e-17
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 5e-17
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 6e-17
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-04
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 2e-04
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 4e-04
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 6e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 34/217 (15%)
Query: 75  GFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSN 134
           GFL R      E+  SL K +  +Q  +D     QI+ D+ RT+P +  +   S      
Sbjct: 79  GFLQRKR---KEYRDSL-KHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV----- 129
Query: 135 QEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKS--------------DP-----DE 175
           Q +L+ IL ++A  +P   YVQG+N+++ P +  F +              DP     DE
Sbjct: 130 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDE 189
Query: 176 EFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEV 235
           + +   EADTF+C  +LL    DN+     +   GI   +  LSQL+K  D +L+ H + 
Sbjct: 190 QIT-DLEADTFWCLTKLLEQITDNYI----HGQPGILRQVKNLSQLVKRIDADLYNHFQN 244
Query: 236 TTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSD 272
                 QF AFRW+  LL +EF     + +WDT LS+
Sbjct: 245 EHVEFIQF-AFRWMNCLLMREFQMGTVIRMWDTYLSE 280
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 6e-70
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 6e-66
2qq8_A334 TBC1 domain family member 14; structural genomics 1e-22
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-21
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-20
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 1e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  221 bits (564), Expect = 6e-70
 Identities = 75/313 (23%), Positives = 118/313 (37%), Gaps = 82/313 (26%)

Query: 3   GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKST 62
           GIP     R  VWKLL+ YLP +       L +KR +Y+                     
Sbjct: 33  GIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSL------------------ 72

Query: 63  IYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMH 122
                                         K +  +Q  +D     QI+ D+ RT+P + 
Sbjct: 73  ------------------------------KHTFSDQHSRDIPTWHQIEIDIPRTNPHIP 102

Query: 123 FFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPD-------- 174
            +        S Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++          
Sbjct: 103 LYQFK-----SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDV 157

Query: 175 ----------EEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKE 224
                     +E     EADTF+C  +LL    DN+         GI   +  LSQL+K 
Sbjct: 158 EIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQ----PGILRQVKNLSQLVKR 213

Query: 225 HDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQVGLMFFL 284
            D +L+ H +    V    +AFRW+  LL +EF     + +WDT LS+        +   
Sbjct: 214 IDADLYNHFQ-NEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETS----QEVTSS 268

Query: 285 FIFSCLILLILWK 297
           +  S   +     
Sbjct: 269 YSMSSNDIKPPVT 281
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-51  Score=380.08  Aligned_cols=249  Identities=31%  Similarity=0.544  Sum_probs=214.0

Q ss_pred             CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (312)
Q Consensus         1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      .+|||+.  +|+.||++|||++|.+.+.|...++++++.|.++++++....                             
T Consensus        31 ~~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~-----------------------------   79 (396)
T 1fkm_A           31 WNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQ-----------------------------   79 (396)
T ss_dssp             TTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSS-----------------------------
T ss_pred             HcCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------
Confidence            3799997  999999999999999999999999999999999999875310                             


Q ss_pred             ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHH
Q 021425           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (312)
Q Consensus        81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~  160 (312)
                                         ...+.+..+||++||.||+|++++|+.+     .+++.|.|||.+|+.+||++|||||||+
T Consensus        80 -------------------~~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~rIL~aya~~np~iGY~QGmn~  135 (396)
T 1fkm_A           80 -------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGIND  135 (396)
T ss_dssp             -------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHH
T ss_pred             -------------------CcccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHHHHHHHHHHCCCCCcccCcHH
Confidence                               0134568899999999999999999986     8999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCC------------------ccccchhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHHHHHHHH
Q 021425          161 ILAPLYYVFKSDPD------------------EEFSVSAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLL  222 (312)
Q Consensus       161 i~~~ll~~~~~~~~------------------~~~~~~~E~~af~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  222 (312)
                      ||++|++++..+..                  .+...++|++|||||+++|++++++|..    +.+|+...+..++.+|
T Consensus       136 i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~----~~~~i~~~~~~l~~LL  211 (396)
T 1fkm_A          136 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH----GQPGILRQVKNLSQLV  211 (396)
T ss_dssp             HHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST----TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHH
Confidence            99999999854321                  0112345999999999999998888865    6789999999999999


Q ss_pred             HhhcHHHHHHHHhhcCCChhHHhHHHHHHhhcccCChhhHHHHHHHhhcCC-----------------------------
Q 021425          223 KEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDP-----------------------------  273 (312)
Q Consensus       223 ~~~~p~L~~hl~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riWD~~l~~~-----------------------------  273 (312)
                      +..+|+|++||++. ++.+.+|+++||+|+|+++||++.++||||.+|++|                             
T Consensus       212 ~~~dP~L~~hL~~~-~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  290 (396)
T 1fkm_A          212 KRIDADLYNHFQNE-HVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASF  290 (396)
T ss_dssp             HHHCHHHHHHHHHT-TCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------
T ss_pred             HHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccc
Confidence            99999999999997 999999999999999999999999999999999987                             


Q ss_pred             ----------------------CCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021425          274 ----------------------DGP-----QVGLMFFLFIFSCLILLILWKDAMFLELRNVII  309 (312)
Q Consensus       274 ----------------------~~~-----~~~~~~il~~~~~a~l~~~~~~ll~~~~~~~~~  309 (312)
                                            ++.     ...+..+++++|+|+|...|++|+++|+++++.
T Consensus       291 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~  353 (396)
T 1fkm_A          291 VTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETIT  353 (396)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHH
T ss_pred             cccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence                                  100     001234566669999999999999999998763
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 312
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-25
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 9e-13
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.4 bits (244), Expect = 2e-25
 Identities = 48/217 (22%), Positives = 77/217 (35%), Gaps = 73/217 (33%)

Query: 2   QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKS 61
            GIP     R  VWKLL+ YLP +       L +KR +Y+                    
Sbjct: 31  NGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKH--------------- 73

Query: 62  TIYESEEWKCESSGFLSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM 121
                                            +  +Q  +D     QI+ D+ RT+P +
Sbjct: 74  ---------------------------------TFSDQHSRDIPTWHQIEIDIPRTNPHI 100

Query: 122 HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS- 180
             +   S      Q +L+ IL ++A  +P   YVQG+N+++ P +  F ++      +  
Sbjct: 101 PLYQFKS-----VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD 155

Query: 181 -----------------AEADTFFCFVELLSGFRDNF 200
                             EADTF+C  +LL    DN+
Sbjct: 156 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.75
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=238.74  Aligned_cols=146  Identities=32%  Similarity=0.556  Sum_probs=126.2

Q ss_pred             CCCCCCCCCChhHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHhccCchhhhhhccccccchhhhhhhcccCccccC
Q 021425            1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS   80 (312)
Q Consensus         1 ~~GiP~~~~~R~~vW~~LLg~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      ++|||+.  +|+.||++|||++|.+.+.|...+.++++.|...........                             
T Consensus        30 ~~Gip~~--lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-----------------------------   78 (194)
T d1fkma1          30 WNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQ-----------------------------   78 (194)
T ss_dssp             TTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSS-----------------------------
T ss_pred             HcCCChH--HHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcc-----------------------------
Confidence            5899997  999999999999999999999999999999999887654221                             


Q ss_pred             ccCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhhhCCCCccccCCCCcchhhHHHHHHHHHHHHHHCCCCCCCCChHH
Q 021425           81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE  160 (312)
Q Consensus        81 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~~iL~~~~~~~p~~gY~QGm~~  160 (312)
                                         ...+.+..++|++||.||+|++++|+.+     .+++.|+|||.+||.+||++|||||||+
T Consensus        79 -------------------~~~~~~~~~~I~~Dv~RT~~~~~~f~~~-----~~~~~L~rIL~~ya~~np~~gY~QGmn~  134 (194)
T d1fkma1          79 -------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGIND  134 (194)
T ss_dssp             -------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHH
T ss_pred             -------------------cccchHHHHHHHHHHHhcCCcccccccc-----hhHHHHHHHHHHHHHHCCCCCeeecchH
Confidence                               1135678999999999999999999987     8999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcc------------------ccchhHHHHHHHHHHHHhhhhhhhc
Q 021425          161 ILAPLYYVFKSDPDEE------------------FSVSAEADTFFCFVELLSGFRDNFC  201 (312)
Q Consensus       161 i~~~ll~~~~~~~~~~------------------~~~~~E~~af~~f~~l~~~~~~~~~  201 (312)
                      |||||+.++..+....                  ....+|+||||||+++|++++++|.
T Consensus       135 i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         135 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            9999999987643210                  2346799999999999999988874
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure