Citrus Sinensis ID: 021436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MASSSSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGAQTGGGSTGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINLI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccEEEEEEcccccccccccEEEEEEcccccEEEEEEcccccccccccccccEEEEccEEEEEccEEEEEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccccccEEEEEEEccccccEEEEEEEcccccccEEEEEEccccccccccEEEEEEEccccEEEEEEEEEcccccccccccccccccccEEEEcccEEEEEEEEEcccccccccEEEEEEEcccccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
masssstrSIVLGLSLWFLLispalsltctsqsknlkneiyahcldlpslssflhftydasnrsLSIAFVaapaksggwiawainptapgmagSQALVAYKDSKGAVTVKLYNVSsyesivptkklsfdvwdtsadesgglmriygkvkvpeelakagklnqvwqvgpsvtpegmiakhdfappnlnskgaldlsgaqtgggstgtdsrtkkrnihGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGwgtglklgsdskgvtytghrNIGIALFSLATVQVTKALVVHDINLI
Flexible Loop (DISEMBL)
MASSSSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYnvssyesivptkklsfdVWDTSADESGGLMRIYGKVKVPEELAkagklnqvwqvGPSVTPEGMIAKHDFAPPNLNSKGALDLSGAqtgggstgtdsrtkkrnIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINLI
Low Complexity Region (SEG)
MASSSSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLsgaqtgggstgtdsRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINLI
Disordered region (IsUnstruct)
*********IVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSV*******************************************NIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDIN**
Disordered Region (DISOPRED)
******T***VLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTV*********************WDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGAQTGGGSTGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINLI
Disordered Region (DISEMBL)
*********IVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSG*************TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINLI
Disordered Region (DISPRO)
*****STRSIVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGAQTG*****TDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINL*
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGAQTGGGSTGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDINLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q94BT2	252	Auxin-induced in root cul	no	no	0.573	0.710	0.486	4e-37

>sp|Q94BT2|AIR12_ARATH Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 122/189 (64%), Gaps = 10/189 (5%)

Query: 11  VLGLSLWFLLISPALSL-TCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAF 69
           +L ++ +  LISPA+S   C SQ+ N     +  C DLP L+S+LH+TY++SN SLS+AF
Sbjct: 10  ILAVACFVSLISPAISQQACKSQNLNSAGP-FDSCEDLPVLNSYLHYTYNSSNSSLSVAF 68

Query: 70  VAAPAKS-GGWIAWAINPTAPGMAGSQALVAYKDSKGAV-TVKLYNVSSYESIVPTKKLS 127
           VA P+++ GGW+AWAINPT   MAGSQA +AY+   GA   VK YN+SSY S+V   KL+
Sbjct: 69  VATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLV-EGKLA 127

Query: 128 FDVWDTSADE-SGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNL 186
           FD W+  A+  SGG + I+  VKVP   A A  +NQVWQ+G +VT  G    H F P NL
Sbjct: 128 FDFWNLRAESLSGGRIAIFTTVKVP---AGADSVNQVWQIGGNVT-NGRPGVHPFGPDNL 183

Query: 187 NSKGALDLS 195
            S   L  +
Sbjct: 184 GSHRVLSFT 192

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
255584675	399	dopamine beta-monooxygenase, putative [R	0.955	0.746	0.650	1e-106
118485035	396	unknown [Populus trichocarpa]	0.955	0.752	0.622	1e-102
297831440	392	predicted protein [Arabidopsis lyrata su	0.913	0.727	0.619	1e-101
224065431	369	predicted protein [Populus trichocarpa]	0.868	0.734	0.658	1e-100
18404500	393	putative auxin-responsive protein [Arabi	0.913	0.725	0.612	2e-99
297790606	394	predicted protein [Arabidopsis lyrata su	0.958	0.758	0.616	4e-99
356567777	394	PREDICTED: uncharacterized protein LOC10	0.881	0.697	0.621	1e-95
21593814	394	unknown [Arabidopsis thaliana]	0.958	0.758	0.603	2e-95
15235545	394	putative auxin-responsive protein [Arabi	0.958	0.758	0.6	6e-95
449522492	414	PREDICTED: uncharacterized LOC101213552,	0.900	0.678	0.616	3e-90

>gi|255584675|ref|XP_002533060.1| dopamine beta-monooxygenase, putative [Ricinus communis] gi|223527158|gb|EEF29330.1| dopamine beta-monooxygenase, putative [Ricinus communis]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/303 (65%), Positives = 239/303 (78%), Gaps = 5/303 (1%)

Query: 1   MASSSSTRSIVLGLSLW-FLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYD 59
           MAS   +  I+L  SL+ FLLIS + S TC +Q+    N +Y +CLDLPSL+S+LH+TYD
Sbjct: 1   MASFRFSALIIL-FSLYNFLLISRSYSQTCKTQTFT-NNNLYTNCLDLPSLTSYLHYTYD 58

Query: 60  ASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYES 119
           +SN +LS+AF+++P+ S GWI+WAINPT  GMAG+QALVAYKDSKGA+TVK YN+SSY S
Sbjct: 59  SSNSTLSVAFLSSPSSSNGWISWAINPTGTGMAGAQALVAYKDSKGAMTVKTYNISSYTS 118

Query: 120 -IVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAK 178
             V  +KL+FDVWD  A+E  G+M++Y K+KVP +L+  G  NQVWQVGPSV  +G++  
Sbjct: 119 DSVVQQKLAFDVWDERAEEENGVMKMYAKIKVPADLSAKGTANQVWQVGPSVDDKGVLKP 178

Query: 179 HDFAPPNLNSKGALDLSGA-QTGGGSTGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARY 237
           H     NLNSKG L L+G  QT   + G DSRTKKRNIHGVLN VSWGILFP+G IIARY
Sbjct: 179 HPMGASNLNSKGTLALNGGDQTTVVTGGVDSRTKKRNIHGVLNGVSWGILFPVGVIIARY 238

Query: 238 LRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLAT 297
           LRTF+SADPAWFYLHV CQ SAYAIGVAGW TGLKLGS+SKG+ YT HRNIGIALFSLAT
Sbjct: 239 LRTFQSADPAWFYLHVSCQVSAYAIGVAGWATGLKLGSESKGIQYTPHRNIGIALFSLAT 298

Query: 298 VQV 300
           +Q+
Sbjct: 299 LQI 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485035|gb|ABK94382.1| unknown [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/302 (62%), Positives = 229/302 (75%), Gaps = 4/302 (1%)

Query: 1   MASSSSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDA 60
           MAS     +++L   +   L  P  S TC SQ+    N +Y HCLDLP+LSS+LHFTYDA
Sbjct: 1   MASPFKISALLLTFCVSISLTLPVRSQTCASQTFT-NNNLYTHCLDLPTLSSYLHFTYDA 59

Query: 61  SNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVS-SYES 119
           +N +LS+AF A+P+KS GWI+WAINP    M G+QALVA+KDSKG ++ K YN+S S   
Sbjct: 60  ANSTLSVAFFASPSKSNGWISWAINPKVAAMGGAQALVAFKDSKGVMSAKTYNISTSTPY 119

Query: 120 IVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSV-TPEGMIAK 178
            V   KL+FDVWDT A+E  G+MRI+ K+KVP ELA  G LNQVWQVG +V   +G++  
Sbjct: 120 SVEQSKLAFDVWDTRAEEESGVMRIFAKIKVPPELAAKGTLNQVWQVGSTVGAAKGVLTI 179

Query: 179 HDFAPPNLNSKGALDLSGAQTGGGSTGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYL 238
           HD   PNLNSKG LDL+G ++   S G DSRTK++NIHGVLNAVSWGILFP+G +IARYL
Sbjct: 180 HDMGAPNLNSKGTLDLNGGKSVS-SGGLDSRTKRKNIHGVLNAVSWGILFPLGIVIARYL 238

Query: 239 RTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATV 298
           RTF SADPAWFYLHV CQ SAYAIGVAGW TG+KLGS+SKGV ++ HRNIGIALF+LATV
Sbjct: 239 RTFPSADPAWFYLHVSCQVSAYAIGVAGWATGIKLGSESKGVQFSLHRNIGIALFALATV 298

Query: 299 QV 300
           Q+
Sbjct: 299 QI 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831440|ref|XP_002883602.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329442|gb|EFH59861.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/294 (61%), Positives = 225/294 (76%), Gaps = 9/294 (3%)

Query: 19  LLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGG 78
           LLISP++S TC SQ+ +  ++ Y HCLDLP L +FLH++YDASN SL++ F A PAK GG
Sbjct: 17  LLISPSVSQTCKSQTFS-GDKTYPHCLDLPQLKAFLHYSYDASNTSLAVVFSAPPAKPGG 75

Query: 79  WIAWAINPTAPGMAGSQALVAYKD-SKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADE 137
           WIAWAINPTA GM G+Q LVAYKD   G   VK  N+SSY S++P+K L+FDVWD  A+E
Sbjct: 76  WIAWAINPTATGMVGAQTLVAYKDPGNGVAVVKTLNISSYSSLIPSK-LAFDVWDMKAEE 134

Query: 138 S---GGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDL 194
           +   GG +RI+ +VKVP +L   GK+NQVWQVGP + P GMI +H F P NL S G+LDL
Sbjct: 135 AARDGGTLRIFARVKVPADLVAKGKVNQVWQVGPELGPGGMIGRHAFDPSNLASMGSLDL 194

Query: 195 SGAQTGGGSTG---TDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYL 251
            G  +GG  +G    +++ K RNIHG+LNAVSWGILFPIGAIIARY+R FESADPAWFYL
Sbjct: 195 KGDNSGGTISGGGEVNAKIKNRNIHGILNAVSWGILFPIGAIIARYMRVFESADPAWFYL 254

Query: 252 HVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALV 305
           HV CQ SAY IGVAGW TGLKLG++S G+ ++ HRNIGIALF+LAT+Q+   L+
Sbjct: 255 HVSCQFSAYVIGVAGWATGLKLGNESAGIRFSAHRNIGIALFTLATIQMFAMLL 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065431|ref|XP_002301814.1| predicted protein [Populus trichocarpa] gi|222843540|gb|EEE81087.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 218/275 (79%), Gaps = 4/275 (1%)

Query: 28  TCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPT 87
           TC SQ+    N +Y HCLDLP+LSS+LHFTYDA+N +LS+AF A+P+KS GWI+WAINP 
Sbjct: 2   TCASQTFT-NNNLYTHCLDLPTLSSYLHFTYDAANSTLSVAFFASPSKSNGWISWAINPK 60

Query: 88  APGMAGSQALVAYKDSKGAVTVKLYNVS-SYESIVPTKKLSFDVWDTSADESGGLMRIYG 146
              M G+QALVA+KDSKG ++ K YN+S S    V   KL+FDVWDT A+E  G+MRI+ 
Sbjct: 61  VAAMGGAQALVAFKDSKGVMSAKTYNISTSTPYSVEQSKLAFDVWDTRAEEESGVMRIFA 120

Query: 147 KVKVPEELAKAGKLNQVWQVGPSV-TPEGMIAKHDFAPPNLNSKGALDLSGAQTGGGSTG 205
           K+KVP ELA  G LNQVWQVG +V   +G++  HD   PNLNSKG LDL+G ++   S G
Sbjct: 121 KIKVPPELAAKGTLNQVWQVGSTVGAAKGVLTIHDMGAPNLNSKGTLDLNGGKSVS-SGG 179

Query: 206 TDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVA 265
            DSRTK++NIHGVLNAVSWGILFP+G +IARYLRTF SADPAWFYLHV CQ SAYAIGVA
Sbjct: 180 LDSRTKRKNIHGVLNAVSWGILFPLGIVIARYLRTFPSADPAWFYLHVSCQVSAYAIGVA 239

Query: 266 GWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQV 300
           GW TG+KLGS+SKGV ++ HRNIGIALF+LATVQ+
Sbjct: 240 GWATGIKLGSESKGVQFSLHRNIGIALFALATVQI 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404500|ref|NP_566763.1| putative auxin-responsive protein [Arabidopsis thaliana] gi|79313415|ref|NP_001030764.1| putative auxin-responsive protein [Arabidopsis thaliana] gi|9294186|dbj|BAB02088.1| unnamed protein product [Arabidopsis thaliana] gi|16323200|gb|AAL15334.1| AT3g25290/MJL12_25 [Arabidopsis thaliana] gi|25090093|gb|AAN72226.1| At3g25290/MJL12_25 [Arabidopsis thaliana] gi|332643484|gb|AEE77005.1| putative auxin-responsive protein [Arabidopsis thaliana] gi|332643485|gb|AEE77006.1| putative auxin-responsive protein [Arabidopsis thaliana]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 180/294 (61%), Positives = 223/294 (75%), Gaps = 9/294 (3%)

Query: 19  LLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGG 78
           LLISPA+S TC SQ+ +  ++ Y HCLDLP L +FLH++YDASN +L++ F A PAK GG
Sbjct: 18  LLISPAVSQTCKSQTFS-GDKTYPHCLDLPQLKAFLHYSYDASNTTLAVVFSAPPAKPGG 76

Query: 79  WIAWAINPTAPGMAGSQALVAYKD-SKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADE 137
           WIAWAINP A GM GSQ LVAYKD   G   VK  N+SSY S++P+K L+FDVWD  A+E
Sbjct: 77  WIAWAINPKATGMVGSQTLVAYKDPGNGVAVVKTLNISSYSSLIPSK-LAFDVWDMKAEE 135

Query: 138 S---GGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDL 194
           +   GG +RI+ +VKVP +L   GK+NQVWQVGP + P GMI +H F   NL S  +LDL
Sbjct: 136 AARDGGSLRIFARVKVPADLVAKGKVNQVWQVGPELGPGGMIGRHAFDSANLASMSSLDL 195

Query: 195 SGAQTGGGSTGTD---SRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYL 251
            G  +GG  +G D   ++ K RNIHG+LNAVSWGILFPIGAIIARY+R F+SADPAWFYL
Sbjct: 196 KGDNSGGTISGGDEVNAKIKNRNIHGILNAVSWGILFPIGAIIARYMRVFDSADPAWFYL 255

Query: 252 HVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALV 305
           HV CQ SAY IGVAGW TGLKLG++S+G+ ++ HRNIGIALF+LAT+Q+   L+
Sbjct: 256 HVSCQFSAYVIGVAGWATGLKLGNESEGIRFSAHRNIGIALFTLATIQMFAMLL 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790606|ref|XP_002863188.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309022|gb|EFH39447.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 191/310 (61%), Positives = 230/310 (74%), Gaps = 11/310 (3%)

Query: 5   SSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKN-EIYAHCLDLPSLSSFLHFTYDASNR 63
           SS   I L    W LL+SPA+S + +  S+       Y HCLDLP L +FLH++YDASN 
Sbjct: 3   SSYLRISLSFVFWALLLSPAVSQSSSCSSQTFSGVRSYPHCLDLPDLKAFLHYSYDASNT 62

Query: 64  SLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSK-GAVTVKLYNVSSYESIVP 122
           +L++ F A P+K GGWIAWAINP + GMAGSQALVA KD K G  +V   N+ SY S+VP
Sbjct: 63  TLAVVFSAPPSKPGGWIAWAINPKSTGMAGSQALVASKDPKTGVASVTTLNIVSYSSLVP 122

Query: 123 TKKLSFDVWDTSADES---GGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKH 179
           +K LSFDVWD  A+E+   GG +RI+ KVKVP +LA  GK+NQVWQVGP V+  G I  H
Sbjct: 123 SK-LSFDVWDVKAEEAANDGGALRIFAKVKVPADLAANGKVNQVWQVGPGVS-NGRIQPH 180

Query: 180 DFAPPNLNSKGALDLSGAQTG----GGSTGTDSRTKKRNIHGVLNAVSWGILFPIGAIIA 235
           DF+ PNLN+ GALDL+GA TG    GG    +SR  KRNIHG+LNAVSWG+LFPIGA+IA
Sbjct: 181 DFSGPNLNAMGALDLTGATTGVPVSGGGGAGNSRIHKRNIHGILNAVSWGLLFPIGAMIA 240

Query: 236 RYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSL 295
           RY+R FESADPAWFYLHV CQ SAYAIGVAGW TGLKLGS+SKG+ +  HRNIGI+LFSL
Sbjct: 241 RYMRIFESADPAWFYLHVSCQFSAYAIGVAGWATGLKLGSESKGIQHNTHRNIGISLFSL 300

Query: 296 ATVQVTKALV 305
           AT+Q+   L+
Sbjct: 301 ATLQMFAMLL 310

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567777|ref|XP_003552092.1| PREDICTED: uncharacterized protein LOC100776506 [Glycine max]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/283 (62%), Positives = 214/283 (75%), Gaps = 8/283 (2%)

Query: 19  LLISPALSLTCTSQS-KNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSG 77
           L+ + A SLTCT+Q   + KN +Y++CLDLP+L SFLH+T+D +N SLS+AF AAP  SG
Sbjct: 17  LVAATASSLTCTTQKLTDSKNNLYSNCLDLPALDSFLHWTHDPTNASLSVAFAAAPPNSG 76

Query: 78  GWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADE 137
           GW++W INPTA GM G+Q L AYK   GAVTVK  ++ SY +IVP  KLSFDVWD   +E
Sbjct: 77  GWVSWGINPTAIGMQGAQVLAAYKADNGAVTVKTLDLKSYTAIVP-GKLSFDVWDVRGEE 135

Query: 138 SGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGA 197
             G++RI+  VKVPE   K   +N VWQVGPSVT  G I +HDF P N+NSKG L  +GA
Sbjct: 136 VRGVIRIFATVKVPE---KVESVNHVWQVGPSVT-AGRIDRHDFGPSNMNSKGVLSFNGA 191

Query: 198 QTGGGSTGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQS 257
           Q GGG+   D  T K+NIHG+LNAVSWG+LFP+G I+ARY+RTF SADPAWFYLHV CQ 
Sbjct: 192 QVGGGAV--DPITIKKNIHGILNAVSWGVLFPLGVIVARYMRTFPSADPAWFYLHVGCQV 249

Query: 258 SAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQV 300
           SAYAIGVAGWGTG+KLGS+S G+ Y  HR IGIALF  AT+Q+
Sbjct: 250 SAYAIGVAGWGTGMKLGSESVGIQYRSHRYIGIALFCFATLQI 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593814|gb|AAM65781.1| unknown [Arabidopsis thaliana]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/310 (60%), Positives = 229/310 (73%), Gaps = 11/310 (3%)

Query: 5   SSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKN-EIYAHCLDLPSLSSFLHFTYDASNR 63
           SS   I L    W LL+SPA+S + +  S+     + Y HCLDLP L + LH++YDASN 
Sbjct: 3   SSYLRISLSFLFWALLLSPAVSQSSSCSSQTFSGVKSYPHCLDLPDLKAILHYSYDASNT 62

Query: 64  SLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKD-SKGAVTVKLYNVSSYESIVP 122
           +L++ F A P+K GGWIAWAINP + GMAGSQALVA KD S G  +V   N+ SY S+VP
Sbjct: 63  TLAVVFSAPPSKPGGWIAWAINPKSTGMAGSQALVASKDPSTGVASVTTLNIVSYSSLVP 122

Query: 123 TKKLSFDVWDTSADES---GGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKH 179
           +K LSFDVWD  A+E+   GG +RI+ KVKVP +LA +GK+NQVWQVGP V+  G I  H
Sbjct: 123 SK-LSFDVWDVKAEEAANDGGALRIFAKVKVPADLAASGKVNQVWQVGPGVS-NGRIQAH 180

Query: 180 DFAPPNLNSKGALDLSGAQTGGGSTGT----DSRTKKRNIHGVLNAVSWGILFPIGAIIA 235
           DF+ PNLNS G+LDL+G   G   +G     +SR  KRNIHG+LNAVSWG+LFPIGA+IA
Sbjct: 181 DFSGPNLNSVGSLDLTGTTPGVPVSGGGGAGNSRIHKRNIHGILNAVSWGLLFPIGAMIA 240

Query: 236 RYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSL 295
           RY+R FESADPAWFYLHV CQ SAYAIGVAGW TGLKLGS+SKG+ Y  HRNIGI+LFS+
Sbjct: 241 RYMRIFESADPAWFYLHVSCQFSAYAIGVAGWATGLKLGSESKGIQYNTHRNIGISLFSI 300

Query: 296 ATVQVTKALV 305
           AT+Q+   L+
Sbjct: 301 ATLQMFAMLL 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235545|ref|NP_193034.1| putative auxin-responsive protein [Arabidopsis thaliana] gi|5123939|emb|CAB45497.1| putative protein [Arabidopsis thaliana] gi|7268000|emb|CAB78340.1| putative protein [Arabidopsis thaliana] gi|28392885|gb|AAO41879.1| unknown protein [Arabidopsis thaliana] gi|28827634|gb|AAO50661.1| unknown protein [Arabidopsis thaliana] gi|332657810|gb|AEE83210.1| putative auxin-responsive protein [Arabidopsis thaliana]

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 186/310 (60%), Positives = 227/310 (73%), Gaps = 11/310 (3%)

Query: 5   SSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKN-EIYAHCLDLPSLSSFLHFTYDASNR 63
           SS   I L    W LL+SPA+S + +  S+     + Y HCLDLP L + LH++YDASN 
Sbjct: 3   SSYLRISLSFLFWALLLSPAVSQSSSCSSQTFSGVKSYPHCLDLPDLKAILHYSYDASNT 62

Query: 64  SLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKD-SKGAVTVKLYNVSSYESIVP 122
           +L++ F A P+K GGWIAWAINP + GMAGSQALVA KD S G  +V   N+ SY S+VP
Sbjct: 63  TLAVVFSAPPSKPGGWIAWAINPKSTGMAGSQALVASKDPSTGVASVTTLNIVSYSSLVP 122

Query: 123 TKKLSFDVWDTSADES---GGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKH 179
           +K LSFDVWD  A+E+   GG +RI+ KVKVP +LA +GK+NQVWQVGP V+  G I  H
Sbjct: 123 SK-LSFDVWDVKAEEAANDGGALRIFAKVKVPADLAASGKVNQVWQVGPGVS-NGRIQAH 180

Query: 180 DFAPPNLNSKGALDLSGAQTGGGSTGT----DSRTKKRNIHGVLNAVSWGILFPIGAIIA 235
           DF+ PNLNS G+LDL+G   G   +G     +SR  KRNIHG+LNAVSWG+LFPIGA+IA
Sbjct: 181 DFSGPNLNSVGSLDLTGTTPGVPVSGGGGAGNSRIHKRNIHGILNAVSWGLLFPIGAMIA 240

Query: 236 RYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSL 295
           RY+R FESADPAWFYLHV CQ SAY IGVAGW TGLKLGS+SKG+ Y  HRNIGI LFS+
Sbjct: 241 RYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGLKLGSESKGIQYNTHRNIGICLFSI 300

Query: 296 ATVQVTKALV 305
           AT+Q+   L+
Sbjct: 301 ATLQMFAMLL 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522492|ref|XP_004168260.1| PREDICTED: uncharacterized LOC101213552, partial [Cucumis sativus]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 180/292 (61%), Positives = 215/292 (73%), Gaps = 11/292 (3%)

Query: 10  IVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAF 69
           +VL    + L  SPA S TC+S+ K   N +Y+HC DLPSLS+FLH+TYD+SN SLS+AF
Sbjct: 39  VVLFPFPFLLYFSPAFSQTCSSR-KFSNNNLYSHCSDLPSLSAFLHWTYDSSNSSLSLAF 97

Query: 70  VAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFD 129
           +A   KS GWIAWAINPT+ GM GSQALVAY  + G   V+ YNV+SY SI P+  LSF+
Sbjct: 98  IA---KSTGWIAWAINPTSTGMVGSQALVAYLHA-GIPVVRTYNVASYGSIRPSN-LSFE 152

Query: 130 VWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSK 189
           VWDTSA  S G   I+ K+KVP     A  LNQVWQ GPSV     +A H F P NLN+K
Sbjct: 153 VWDTSAQSSAGEFIIFAKLKVPTS---ATTLNQVWQAGPSVDGT-TLAVHPFQPANLNAK 208

Query: 190 GALDLSGAQTGGGSTG-TDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAW 248
           G L LSG +    ++G  DSRT ++NIHGVLNAVSWG+LFP G +IARYLR F SADPAW
Sbjct: 209 GTLGLSGGEVTNNNSGEVDSRTMRKNIHGVLNAVSWGLLFPTGVVIARYLRVFPSADPAW 268

Query: 249 FYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQV 300
           FYLH+ CQ SAYAIGVAGWGTG+KLGS+S+G    GHRNIGIALFS+AT+Q+
Sbjct: 269 FYLHISCQISAYAIGVAGWGTGMKLGSESEGFVAYGHRNIGIALFSMATLQM 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.967	0.768	0.586	1.1e-92
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.951	0.753	0.592	1e-91
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.935	0.739	0.478	2e-65
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.919	0.713	0.474	5.2e-65
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.900	0.695	0.425	7.5e-57
TAIR|locus:2077690	466	AT3G59070 [Arabidopsis thalian	0.926	0.620	0.353	5e-44
TAIR|locus:2156559	255	AT5G48750 [Arabidopsis thalian	0.778	0.952	0.341	2.2e-34
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.900	0.695	0.322	1.1e-32
TAIR|locus:2076770	398	AT3G61750 [Arabidopsis thalian	0.727	0.570	0.254	1e-14
TAIR|locus:2091097	369	AT3G07570 [Arabidopsis thalian	0.817	0.691	0.241	2.3e-12

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 183/312 (58%), Positives = 224/312 (71%)

Query:     1 MASSSSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDA 60
             M+SSSS R I L      LLISPA+S TC SQ+ +  ++ Y HCLDLP L +FLH++YDA
Sbjct:     1 MSSSSSVR-ISLSFIFLALLISPAVSQTCKSQTFS-GDKTYPHCLDLPQLKAFLHYSYDA 58

Query:    61 SNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKD-SKGAVTVKLYNVSSYES 119
             SN +L++ F A PAK GGWIAWAINP A GM GSQ LVAYKD   G   VK  N+SSY S
Sbjct:    59 SNTTLAVVFSAPPAKPGGWIAWAINPKATGMVGSQTLVAYKDPGNGVAVVKTLNISSYSS 118

Query:   120 IVPTKKLSFDVWDTSADES---GGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMI 176
             ++P+K L+FDVWD  A+E+   GG +RI+ +VKVP +L   GK+NQVWQVGP + P GMI
Sbjct:   119 LIPSK-LAFDVWDMKAEEAARDGGSLRIFARVKVPADLVAKGKVNQVWQVGPELGPGGMI 177

Query:   177 AKHDFAPPNLNSKGALDLXXXXXXXXXXXXX---XRTKKRNIHGVLNAVSWGILFPIGAI 233
              +H F   NL S  +LDL                 + K RNIHG+LNAVSWGILFPIGAI
Sbjct:   178 GRHAFDSANLASMSSLDLKGDNSGGTISGGDEVNAKIKNRNIHGILNAVSWGILFPIGAI 237

Query:   234 IARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALF 293
             IARY+R F+SADPAWFYLHV CQ SAY IGVAGW TGLKLG++S+G+ ++ HRNIGIALF
Sbjct:   238 IARYMRVFDSADPAWFYLHVSCQFSAYVIGVAGWATGLKLGNESEGIRFSAHRNIGIALF 297

Query:   294 SLATVQVTKALV 305
             +LAT+Q+   L+
Sbjct:   298 TLATIQMFAMLL 309

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 185/312 (59%), Positives = 224/312 (71%)

Query:     5 SSTRSIVLGLSLWFLLISPALSLT--CTSQS-KNLKNEIYAHCLDLPSLSSFLHFTYDAS 61
             SS   I L    W LL+SPA+S +  C+SQ+   +K+  Y HCLDLP L + LH++YDAS
Sbjct:     3 SSYLRISLSFLFWALLLSPAVSQSSSCSSQTFSGVKS--YPHCLDLPDLKAILHYSYDAS 60

Query:    62 NRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKD-SKGAVTVKLYNVSSYESI 120
             N +L++ F A P+K GGWIAWAINP + GMAGSQALVA KD S G  +V   N+ SY S+
Sbjct:    61 NTTLAVVFSAPPSKPGGWIAWAINPKSTGMAGSQALVASKDPSTGVASVTTLNIVSYSSL 120

Query:   121 VPTKKLSFDVWDTSADES---GGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIA 177
             VP+K LSFDVWD  A+E+   GG +RI+ KVKVP +LA +GK+NQVWQVGP V+  G I 
Sbjct:   121 VPSK-LSFDVWDVKAEEAANDGGALRIFAKVKVPADLAASGKVNQVWQVGPGVS-NGRIQ 178

Query:   178 KHDFAPPNLNSKGALDLXXXX----XXXXXXXXXXRTKKRNIHGVLNAVSWGILFPIGAI 233
              HDF+ PNLNS G+LDL                  R  KRNIHG+LNAVSWG+LFPIGA+
Sbjct:   179 AHDFSGPNLNSVGSLDLTGTTPGVPVSGGGGAGNSRIHKRNIHGILNAVSWGLLFPIGAM 238

Query:   234 IARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALF 293
             IARY+R FESADPAWFYLHV CQ SAY IGVAGW TGLKLGS+SKG+ Y  HRNIGI LF
Sbjct:   239 IARYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGLKLGSESKGIQYNTHRNIGICLF 298

Query:   294 SLATVQVTKALV 305
             S+AT+Q+   L+
Sbjct:   299 SIATLQMFAMLL 310

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 145/303 (47%), Positives = 190/303 (62%)

Query:     1 MASSSSTRSIVLGLSLW-FLLISPALSLTCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYD 59
             MA SS+   ++L LSL+ F++   AL+  C S  K   N ++  C DLP L SFLH+TYD
Sbjct:     1 MAISSN---LLLCLSLFIFIITKSALAQKC-SNYKFSTNRLFESCNDLPVLDSFLHYTYD 56

Query:    60 ASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYES 119
             +S+ +L IA+       G W+AWA+NPT+ GM G+QA+VAY  S G V      +SSY++
Sbjct:    57 SSSGNLQIAYRHTKLTPGKWVAWAVNPTSTGMVGAQAIVAYPQSDGTVRAYTSPISSYQT 116

Query:   120 IVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKH 179
              +   +LSF+V   SA      M IY  + +P  LA  G +N VWQ G S++    +  H
Sbjct:   117 SLLEAELSFNVSQLSATYQNNEMVIYAILNLP--LANGGIINTVWQDG-SLSGNNPLP-H 172

Query:   180 DFAPPNLNSKGALDLXXXXXXXXXXXXXXRTK--KRNIHGVLNAVSWGILFPIGAIIARY 237
               +  N+ S   L+L               +K  KRNIHG+LN VSWGI+ PIGAIIARY
Sbjct:   173 PTSGNNVRSVSTLNLVSGASGSTSTGAGGASKLRKRNIHGILNGVSWGIMMPIGAIIARY 232

Query:   238 LRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLAT 297
             L+  +SADPAWFYLHV CQSSAY IGVAGW TGLKLG++S G+ +T HR +GIALF LAT
Sbjct:   233 LKVSKSADPAWFYLHVFCQSSAYIIGVAGWATGLKLGNESAGIQFTFHRAVGIALFCLAT 292

Query:   298 VQV 300
             +QV
Sbjct:   293 IQV 295

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 139/293 (47%), Positives = 182/293 (62%)

Query:    11 VLGLSLWFLLISPALSL--TCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIA 68
             +L LSL   +    LS   TC S+ K   N ++  C DLP L SFLH+TY++S  SL IA
Sbjct:    14 ILCLSLILSISMTTLSFAQTC-SKYKFSSNNVFDSCNDLPFLDSFLHYTYESSTGSLHIA 72

Query:    69 FVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSF 128
             +      SG W+AWA+NPT+ GM G+QA+VAY  S G V V    + SY++ +    LSF
Sbjct:    73 YRHTKLTSGKWVAWAVNPTSTGMVGAQAIVAYPQSDGTVRVYTSPIRSYQTSLLEGDLSF 132

Query:   129 DVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNS 188
             +V   SA      + +   +K+ ++L   G +N VWQ G S++   ++  H  +  N+ S
Sbjct:   133 NVSGLSATYQNNEIVVLASLKLAQDLGNGGTINTVWQDG-SMSGNSLLP-HPTSGNNVRS 190

Query:   189 KGALDLXXXXXXXXXXXX-XXRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPA 247
                L+L               + +KRNIHG+LN VSWGI+ P+GAIIARYLR  +SADPA
Sbjct:   191 VSTLNLVSGVSAAAGGAGGSSKLRKRNIHGILNGVSWGIMMPLGAIIARYLRVAKSADPA 250

Query:   248 WFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQV 300
             WFY+HV CQ+SAY IGVAGW TGLKLG DS G+ Y+ HR IGIALFSLATVQV
Sbjct:   251 WFYIHVFCQASAYIIGVAGWATGLKLGGDSPGIQYSTHRAIGIALFSLATVQV 303

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 125/294 (42%), Positives = 173/294 (58%)

Query:    18 FLLISPALSLTCTSQS-----KNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAA 72
             F +++  L LT   QS     +   N  +A C DL +L SFLH+TY+  N ++SIA+   
Sbjct:    12 FAVLATLLVLTVNGQSLCNTHRFTNNLAFADCSDLSALGSFLHWTYNEQNGTVSIAYRHP 71

Query:    73 PAKSGGWIAWAINPTAPGMAGSQALVAYKDSK-GAVTVKLYNVSSYESIVPTKKLSFDVW 131
                +  W+AW +NP++  M G+QALVA+ ++          +VSSY + +    LSF V 
Sbjct:    72 GTSASSWVAWGLNPSSTQMVGTQALVAFTNTTTNQFQAYTSSVSSYGTRLERSSLSFGVS 131

Query:   132 DTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGA 191
               SA    G + I+  +++   L  A   NQ+WQVGP V   G+ A H  +  N+ S G 
Sbjct:   132 GLSATLVSGEVTIFATLELSPNLITA---NQLWQVGPVVN--GVPASHQTSGDNMRSSGR 186

Query:   192 LDLXXXXXXXXXXXXXXRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYL 251
             +D               R +KRN HGVLNAVSWG+L P+GA++ARY++ F  ADP WFYL
Sbjct:   187 IDFRTGQASAGGGGSGDRLRKRNTHGVLNAVSWGVLMPMGAMMARYMKVF--ADPTWFYL 244

Query:   252 HVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALV 305
             H+  Q S Y IGVAGW TG+KLG+DS G +Y+ HRN+GIALF+ AT+QV   LV
Sbjct:   245 HIAFQVSGYVIGVAGWATGIKLGNDSPGTSYSTHRNLGIALFTFATLQVFALLV 298

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 110/311 (35%), Positives = 168/311 (54%)

Query:     4 SSSTRSIVLGLSLWFLLISPALSLTCTSQSKNLKN--EIYAH--------CLDLPSLSSF 53
             S S+R+ ++ L   F+LI P+ +   T Q  + ++  E Y+         C DL  L+S+
Sbjct:     2 SLSSRATLVVLCCLFMLI-PSFTTAATEQGLHARSRCESYSFNNGKSFRSCTDLLVLNSY 60

Query:    54 LHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLY- 112
             LHF Y      L IA+  +  +S  WI+WAINPT+ GM G+QALVAY++S   V ++ Y 
Sbjct:    61 LHFNYAQETGVLEIAYHHSNLESSSWISWAINPTSKGMVGAQALVAYRNSTSGV-MRAYT 119

Query:   113 -NVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVT 171
              +++SY  ++    LS  V   SA+ S G M I+  + +P        +N +WQ GP   
Sbjct:   120 SSINSYSPMLQESPLSLRVTQVSAEYSNGEMMIFATLVLPPNTTV---VNHLWQDGP--L 174

Query:   172 PEG-MIAKHDFAPPNLNSKGALDLXXXXXXXXXXXXXXRTKKRNIHGVLNAVSWGILFPI 230
              EG  +  H  +  NL S  +LDL                  + IH ++NA+SWGIL PI
Sbjct:   175 KEGDRLGMHAMSGDNLKSMASLDLLSGQVTTTKSVNRNMLLVKQIHAIVNALSWGILMPI 234

Query:   231 GAIIARYLRTFESADPAWFYLHVLCQSSAYAIG-VAGWGTGLKLGSDSKGVTYTGHRNIG 289
             G + ARY++ +E  DP WFY+HV+CQ++ Y  G + G GT + +   + G+  T H  IG
Sbjct:   235 GVMAARYMKNYEVLDPTWFYIHVVCQTTGYFSGLIGGLGTAIYMARHT-GMRTTLHTVIG 293

Query:   290 IALFSLATVQV 300
             + LF+L  +Q+
Sbjct:   294 LLLFALGFLQI 304

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2156559 AT5G48750 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 88/258 (34%), Positives = 133/258 (51%)

Query:     6 STRSIVLGLSLWFLLISPALSLTCTSQ------SKNLKN-EIYAHCLDLPSLSSFLHFTY 58
             S+R+I +GL   F+L +P  +   T++      S N  N + +  C+DLP L SFLH++Y
Sbjct:     4 SSRTIFVGLCFLFVL-APCFTRATTNEVQVSCDSHNFNNGKHFRSCVDLPVLDSFLHYSY 62

Query:    59 DASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDS-KGAVTVKLYNVSSY 117
                   L +A+     +S  WIAW INPT+ GM G+Q L+AY++S  G +     +++ Y
Sbjct:    63 VRETGVLEVAYRHTNIESSSWIAWGINPTSKGMIGAQTLLAYRNSTSGFMRAYTSSINGY 122

Query:   118 ESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEG-MI 176
               ++    LSF V   SA+     M I+  +  P        +N +WQ GP    EG  +
Sbjct:   123 TPMLQEGPLSFRVTQLSAEYLNREMTIFATMVWPSNTTV---VNHLWQDGP--LKEGDRL 177

Query:   177 AKHDFAPPNLNSKGALDLXXXXXXXXXXXXXXRTKKRNIHGVLNAVSWGILFPIGAIIAR 236
               H  +  +L S   LDL                  ++IHG++NAV WGI  PIG + AR
Sbjct:   178 GMHAMSGNHLKSMANLDLLSGQVMTTKAANDNMLLVKSIHGLVNAVCWGIFIPIGVMAAR 237

Query:   237 YLRTFESADPAWFYLHVL 254
             Y+RT++  DP WFY+ +L
Sbjct:   238 YMRTYKGLDPTWFYILIL 255

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0030198 "extracellular matrix organization" evidence=ISS

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 101/313 (32%), Positives = 150/313 (47%)

Query:    14 LSLWFLLISPAL--SLT--CTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAF 69
             LS   LL++  L  SL   CT+ +     + +  C+ LP+  + + +TY   N +L + F
Sbjct:     6 LSFLLLLLATKLPESLAGHCTTTTAT---KSFEKCISLPTQQASIAWTYHPHNATLDLCF 62

Query:    70 VAAPAKSGGWIAWAINPTAPG-MAGSQALVAYKD-SKGAVTVKLYNVSSYESIVPTKKLS 127
                     GW+ W INP +P  M GS+ L+A+ D + G + +  Y + S   +     LS
Sbjct:    63 FGTFISPSGWVGWGINPDSPAQMTGSRVLIAFPDPNSGQLILLPYVLDSSVKLQKGPLLS 122

Query:   128 --FDVW---DTSADESGGLM---------RIYGKVKVPEELAKAGKLNQVWQVGPSVTPE 173
                D+     +SA   GG M         +IY  VK+     K   ++ VW  G  V  +
Sbjct:   123 RPLDLVRLSSSSASLYGGKMATIRNGASVQIYASVKLSSNNTK---IHHVWNRGLYV--Q 177

Query:   174 GMIAK-HDFAPPNLNSKGALDLXXXXXXXXXXXXXXRTKKRNIHGVLNAVSWGILFPIGA 232
             G     H     +L+S    D+                K    HGV+NA+SWG L P GA
Sbjct:   178 GYSPTIHPTTSTDLSSFSTFDVTSGFATVNQNSGSRALKVT--HGVVNAISWGFLLPAGA 235

Query:   233 IIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIAL 292
             + ARYLR  +S  P WFY+H   Q + + +G  G+  G+ LG +S GVTY  HR++GIA 
Sbjct:   236 VTARYLRQMQSIGPTWFYIHAAIQLTGFLLGTIGFSIGIVLGHNSPGVTYGLHRSLGIAT 295

Query:   293 FSLATVQVTKALV 305
             F+ A +Q T AL+
Sbjct:   296 FTAAALQ-TLALL 307

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 62/244 (25%), Positives = 105/244 (43%)

Query:    60 ASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYE- 118
             + NR   +  + +   + GW+    +     M GS A++ +   KG   +K Y +   E 
Sbjct:    71 SENRDNVMTIIVSALYTTGWVGIGFSKEGR-MVGSSAMIGWISKKGHAKIKQYYLQGTER 129

Query:   119 -SIVPTK-KLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPEGMI 176
               +VP + +L            G ++ +  +VK    + +   +       PS    G +
Sbjct:   130 DQVVPDQGELQLQKVPPVVALHGAMIYLAFQVKFAVRVPRRAVILAFSTAYPSKL--GRL 187

Query:   177 AKHDFAPPNLNSKGALDLXXXXXXXXXXXXXXRTKKRNIHGVLNAVSWGILFPIGAIIAR 236
              KHD        K  + +               + ++  HGV+  + WG L P+GAI+AR
Sbjct:   188 TKHD-------DKTTVIVDFSKASGATSIKTTTSTEKTKHGVMAILGWGFLLPVGAILAR 240

Query:   237 YLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLA 296
             YLR     DP W+YLH+  Q + +  G+A    G++L +  +      HR IGI L  L+
Sbjct:   241 YLR---HKDPLWYYLHIGFQFTGFIFGLAAVILGIQLYNRIQP-DIPAHRGIGIFLLVLS 296

Query:   297 TVQV 300
             T+QV
Sbjct:   297 TLQV 300

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 67/277 (24%), Positives = 118/277 (42%)

Query:    38 NEIYAHCLDLPSLSSF-LHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQA 96
             N     C +  +  +F L +   A N   + +F+ +   S  +I    + T   M GS A
Sbjct:    42 NTSLLQCTEAWTPQNFILRYARTAEN---TWSFILSAPDSSAFIGIGFS-TNGQMIGSSA 97

Query:    97 LVAYKDSKGAV-TVKLYNVS--SYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEE 153
             +V +  S G   TVK Y +   S   + P +     + + S        R+Y + ++   
Sbjct:    98 IVGWIPSDGGSGTVKPYLLGGKSPGEVNPDQG-DLTIVNGSLKIESVSSRLYMRFQLTAT 156

Query:   154 LAKAGKLNQVWQVG--PSVTPEGMIAKHDFAPPNLNSKGALDLXXXXXXXXXXXXXXRTK 211
             L +   L  V   G  PS +P+  + +H F            +               +K
Sbjct:   157 LPRQSLLYAVGPAGFFPS-SPDFRLREHRFVTTTT-------INYNTGSQSVVKVSPHSK 208

Query:   212 KRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGL 271
              +  HG++N   WGIL  +GAI+AR+++ +   DP WFY H+  Q++ + +G+ G   GL
Sbjct:   209 LKKTHGLMNMFGWGILIIVGAIVARHMKQW---DPTWFYAHIALQTTGFLLGLTGVICGL 265

Query:   272 KLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHD 308
              L +  K    + H+ +GI +  +  +Q+   L   D
Sbjct:   266 VLENRLKANNVSKHKGLGITILVMGVLQMLALLARPD 302

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0003_2822 annotation not avaliable (392 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
cd09629	152	cd09629, DOMON_CIL1_like, DOMON-like domain of Bra	7e-70
pfam04526	101	pfam04526, DUF568, Protein of unknown function (DU	7e-31
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	9e-29
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	4e-21
smart00664	148	smart00664, DoH, Possible catecholamine-binding do	2e-20

>gnl|CDD|187687 cd09629, DOMON_CIL1_like, DOMON-like domain of Brassica carinata CIL1 and similar proteins

 Score =  213 bits (545), Expect = 7e-70
 Identities = 77/156 (49%), Positives = 101/156 (64%), Gaps = 4/156 (2%)

Query: 41  YAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAY 100
           +A C DLP+L + LH+TY+ASN +L +AF A P  S GW+AW INPT  GM G+QALVA+
Sbjct: 1   FAACNDLPTLGASLHWTYNASNSTLDVAFRATPPSSSGWVAWGINPTGTGMVGTQALVAF 60

Query: 101 KDSKGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKL 160
           ++S G+V V  YN++SY  +     LSFDV D SA+ SGG M I+  +K+P   +    +
Sbjct: 61  RNSNGSVLVYTYNITSYTKLGEPLPLSFDVSDLSAEYSGGEMTIFATLKLP---SNLTSV 117

Query: 161 NQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSG 196
           N VWQVGP+VT  G    H  +  NL SKG LDL  
Sbjct: 118 NHVWQVGPAVT-GGSPGPHPTSGANLASKGTLDLLT 152

Brassica carinata CIL1 has been described as involved in suppression of axillary meristem development. It contains a single DOMON domain, the function of which is unclear. Members in this diverse family of plant proteins may have a cytochrome b561 domain C-terminal to the DOMON domain, some members from Arabidopsis have been characterized as auxin-responsive or auxin-induced proteins. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 152

>gnl|CDD|191019 pfam04526, DUF568, Protein of unknown function (DUF568)

 Score =  111 bits (280), Expect = 7e-31
 Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 5/105 (4%)

Query: 91  MAGSQALVAYKDSK-GAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVK 149
           M GSQALVA++DS  GAV V   N+SSY + +    LSFDV D SA+ES G + I+  +K
Sbjct: 1   MVGSQALVAFRDSSSGAVRVYTSNISSYSTSLQEGPLSFDVPDLSAEESNGEVTIFATLK 60

Query: 150 VPEELAKAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDL 194
           +P   A   K+NQVWQVGP VT  G    H  +  NL S G LDL
Sbjct: 61  LP---ANTTKVNQVWQVGPVVT-GGSPGIHPTSGDNLRSMGTLDL 101

Family of uncharacterized plant proteins. Length = 101

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  108 bits (273), Expect = 9e-29
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 11/131 (8%)

Query: 186 LNSKGALDLSGAQTGGGSTGTDSRT--------KKRNIHGVLNAVSWGILFPIGAIIARY 237
             S  +LDL+   +  G +                   HGVL A++WGIL PIGA++ARY
Sbjct: 1   SKSSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARY 60

Query: 238 LRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLAT 297
              F   DP WFYLH   Q  A  + +AG+  G+ L     G     H  +GI + +LA 
Sbjct: 61  ---FLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAI 117

Query: 298 VQVTKALVVHD 308
           +Q    L+   
Sbjct: 118 LQPLLGLLRPH 128

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score = 86.9 bits (216), Expect = 4e-21
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 215 IHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG 274
           +H VL  + +G L     ++AR L T   + P WF LHV+ Q  A  +GV G        
Sbjct: 1   LHPVLMILGFGFLMGEAILVARPL-TRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISH 59

Query: 275 SDSKGV-TYTGHRNIGIALFSLATVQV 300
           ++S     Y+ H  +G+A F LA +Q 
Sbjct: 60  NESGIANFYSLHSWLGLAAFVLAGLQW 86

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|214768 smart00664, DoH, Possible catecholamine-binding domain present in a variety of eukaryotic proteins

 Score = 85.2 bits (211), Expect = 2e-20
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 49  SLSSFLHFTYDASNRSLSIAF-VAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAV 107
           S   FL ++ D  N   SIAF ++ P  + GW+A   +P    MAG+  +VA+ D+ G V
Sbjct: 1   SCDYFLSWSVDGEN---SIAFELSGPTSTNGWVAIGFSPDG-QMAGADVVVAWVDNNGRV 56

Query: 108 TVKLYNVSSYESIVPTKKLSFDVWD-TSADESGGLMRIYGKVKVPEELAK-----AGKLN 161
           TVK Y    Y    P +    DV D  SA    G++    + K+            G ++
Sbjct: 57  TVKDYYTPGYGP--PVEDDQQDVTDLLSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVH 114

Query: 162 QVWQVGPSVTPEGMIAKHDFAPPNLNS 188
            +W  GP   P G +  HDF+  +   
Sbjct: 115 VLWAKGPLS-PNGGLGYHDFSLKSTKK 140

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press). Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG4293	403	consensus Predicted membrane protein, contains DoH	100.0
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	99.87
smart00664	148	DoH Possible catecholamine-binding domain present	99.85
PF04526	101	DUF568: Protein of unknown function (DUF568); Inte	99.77
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.77
PF03351	124	DOMON: DOMON domain; InterPro: IPR005018 The DOMON	99.75
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.69
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.64
cd00241	184	CDH_cytochrome Cellobiose dehydrogenase (Cellobios	99.63
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	99.57
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.48
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	99.31
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	99.27
PLN02351	242	cytochromes b561 family protein	99.19
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	99.19
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	99.12
PLN02680	232	carbon-monoxide oxygenase	99.06
KOG3568	603	consensus Dopamine beta-monooxygenase [Amino acid	99.05
PLN02810	231	carbon-monoxide oxygenase	99.04
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	99.03
KOG1619	245	consensus Cytochrome b [Energy production and conv	98.73
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	96.11
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	95.97
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	95.88
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	95.69
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	95.46
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	92.57
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	91.3
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	90.43
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	88.9
PLN02680	232	carbon-monoxide oxygenase	88.3
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	85.5
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	82.36

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-34  Score=273.59  Aligned_cols=296  Identities=44%  Similarity=0.736  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHhhcccccC--CCCccccccccccccccccCCCCCeEEEEEEecCCCeEEEEEEeccCCCCceEEEEeCCC
Q 021436           10 IVLGLSLWFLLISPALSL--TCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPT   87 (312)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~--~C~~~~~~~~~~~~~~C~~l~~~~~~l~W~~~~~~~~~~i~f~~~~~~~~gWVAiGfs~~   87 (312)
                      +.++..++++...++.+|  .|.++++ +.+..++.|.++|++++.++++|+.+++..++.|....  ...|++++++|+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~C~~~~~-~~~~~~~~c~~lp~~~~~i~~~~~~~~~~~~i~~~~~~--~~~w~~~~~~p~   80 (403)
T KOG4293|consen    4 LIIGFALLFSLTSPAFSQTDTCSSQTF-NIDKSFDSCVDLPTLNSFIHYTYNSANGVLSIAFSAPL--SSAWVAWAINPT   80 (403)
T ss_pred             EEehHhHHHhccCchhhhhcceeeeec-cCCccccccccCCCCCceEEEEEecCCCeEEEEEecCC--cccccccccCCc
Confidence            456667777777787777  5999999 77788999999999999999999998999999999853  334999999999


Q ss_pred             CCCCCCCcEEEEEECC-CCcEEEEEEeecccccccCCCCeeEEeeccceEEeCCE---EEEEEEEecCCcccCCCceeEE
Q 021436           88 APGMAGSQALVAYKDS-KGAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGL---MRIYGKVKVPEELAKAGKLNQV  163 (312)
Q Consensus        88 g~~M~gsd~~I~~~~~-~G~v~v~~~~~~g~~~p~~~~~~~~~v~~~s~~~~~g~---~~~~~~~~l~~~~~~~~~~~~i  163 (312)
                      +++|.++.++|+|..+ +|...+.++...++.+........+++.+...+++...   +.+|++++++.  .+...+..+
T Consensus        81 ~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~l~~--~~~~~~~~~  158 (403)
T KOG4293|consen   81 GTGMVGSRALVAYAGSSSGATTVKTYVILGYSPSLVPALLSFTLGNVRAECNLRSSSPIGIFASFKLAG--ANGGKYSAV  158 (403)
T ss_pred             cccccccceeeeeeccccchhhceeeeecccchhhcccccceeeecCcchhhccCCCCceEEEEEEeec--CCCceeEEE
Confidence            9889999999999975 67788889988888754444455667777666554333   77888999884  156789999


Q ss_pred             eeecCCCCCCCCcccCCCCCCCCCCceEEecCCcccCCCC----CCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 021436          164 WQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGAQTGGGS----TGTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLR  239 (312)
Q Consensus       164 wa~G~~~~~~~~l~~H~~~g~n~~s~~~ldl~~g~~~~~~----~~~~~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k  239 (312)
                      |+.|+...++..+.+|...+.+..+...+|++...+....    ....+...++..||++|.++|++++|+|++.+||+|
T Consensus       159 w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~  238 (403)
T KOG4293|consen  159 WQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLR  238 (403)
T ss_pred             EEccCCccCCCCCccCccccCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccceeEEEec
Confidence            9999875436789999998877666677787763322111    012333456667999999999999999999999999


Q ss_pred             cccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhhhccCCC
Q 021436          240 TFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDIN  310 (312)
Q Consensus       240 ~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r~~~~  310 (312)
                      ..+..++.||++|+.+|..++++.+.|+..|.++.+++.+..+..|+.+|+.++++.++|++..++||.|+
T Consensus       239 ~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~  309 (403)
T KOG4293|consen  239 QKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPE  309 (403)
T ss_pred             ccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcc
Confidence            88778999999999999999999999999999998887777788999999999999999999999999986

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=99.87  E-value=1.5e-21  Score=171.00  Aligned_cols=120  Identities=36%  Similarity=0.598  Sum_probs=98.4

Q ss_pred             CceEEecCCcccCCCCC--------CCCCccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHH
Q 021436          188 SKGALDLSGAQTGGGST--------GTDSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSA  259 (312)
Q Consensus       188 s~~~ldl~~g~~~~~~~--------~~~~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~  259 (312)
                      +..++|+++|+.+....        +....+.+.++||++|++||++++|+|++++||++.   .++.||++|+.+|+++
T Consensus         3 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~---~~~~~~~~H~~~q~~~   79 (191)
T cd08760           3 SSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL---GDPVWFYLHAGLQLLA   79 (191)
T ss_pred             cceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHH
Confidence            35678888876533210        112345788999999999999999999999999742   4689999999999999


Q ss_pred             HHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHHhhhhhccCCC
Q 021436          260 YAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQVTKALVVHDIN  310 (312)
Q Consensus       260 ~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~~~g~~r~~~~  310 (312)
                      ++++++|+++++....+..+..++.|+++|+++++++++|+++|++||.+.
T Consensus        80 ~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~  130 (191)
T cd08760          80 VLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPG  130 (191)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999875222245688999999999999999999999999875

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins

Probab=99.85  E-value=7.4e-20  Score=153.54  Aligned_cols=139  Identities=27%  Similarity=0.472  Sum_probs=107.6

Q ss_pred             CeEEEEEEecCCCeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeecccccccCCCCeeEEe
Q 021436           51 SSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIVPTKKLSFDV  130 (312)
Q Consensus        51 ~~~l~W~~~~~~~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~v  130 (312)
                      +..|+|+++.+ +.+.++++.+.. ..||||||||++++ |.|+|++|||.+.+|++.+.+++.+|+..|..+...++..
T Consensus         3 ~~~l~W~~~~~-~~v~~~l~~~~~-~~gwvaiGfs~~~~-M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~~~~   79 (148)
T smart00664        3 DYFLSWSVDGE-NSIAFELSGPTS-TNGWVAIGFSPDGQ-MAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQDVTD   79 (148)
T ss_pred             eEEEEEEECCC-CeEEEEEEEecC-CCCEEEEEECCCCC-cCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCccccccc
Confidence            46789999865 666566655422 38999999999866 9999999999987799999999999999887665554432


Q ss_pred             eccceEEeCCEEEEEEEEecCCccc-----CCCceeEEeeecCCCCCCCCcccCCCCCCCCCCceEEecCCc
Q 021436          131 WDTSADESGGLMRIYGKVKVPEELA-----KAGKLNQVWQVGPSVTPEGMIAKHDFAPPNLNSKGALDLSGA  197 (312)
Q Consensus       131 ~~~s~~~~~g~~~~~~~~~l~~~~~-----~~~~~~~iwa~G~~~~~~~~l~~H~~~g~n~~s~~~ldl~~g  197 (312)
                      . .++.+.+|.++|.|+|++.+++.     ...+++++||.|+... ++.+.+|...   ..+..++++.+.
T Consensus        80 ~-~~~~~~~g~~~~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~~-~~~~~~H~~~---~~~~~~i~~~~~  146 (148)
T smart00664       80 L-LSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLSP-NGGLGYHDFS---LKSTKKVCLSSC  146 (148)
T ss_pred             c-eeEEEECCEEEEEEEEEccCCCccccccCCCeEEEEEEECCCCC-CCCeeecccc---ccCceEEEeccC
Confidence            2 16777899999999999998763     2457899999998332 6779999875   235678888764

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).

>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein

Probab=99.77  E-value=2.8e-18  Score=133.89  Aligned_cols=100  Identities=51%  Similarity=0.781  Sum_probs=94.2

Q ss_pred             CCCCcEEEEEECCC-CcEEEEEEeecccccccCCCCeeEEeeccceEEeCCEEEEEEEEecCCcccCCCceeEEeeecCC
Q 021436           91 MAGSQALVAYKDSK-GAVTVKLYNVSSYESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAKAGKLNQVWQVGPS  169 (312)
Q Consensus        91 M~gsd~~I~~~~~~-G~v~v~~~~~~g~~~p~~~~~~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~~~~~~~~iwa~G~~  169 (312)
                      |.|++++|++++++ |.+.+++|.+++|.++..++.+++++.+.++++++++++||++++|+.   +.++++++|++|+.
T Consensus         1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~---n~t~vnhVWQ~G~~   77 (101)
T PF04526_consen    1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPG---NSTSVNHVWQVGPS   77 (101)
T ss_pred             CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCC---CCcEEEEEeCcCCc
Confidence            99999999999987 899999999999998788888999999999999999999999999997   89999999999998


Q ss_pred             CCCCCCcccCCCCCCCCCCceEEec
Q 021436          170 VTPEGMIAKHDFAPPNLNSKGALDL  194 (312)
Q Consensus       170 ~~~~~~l~~H~~~g~n~~s~~~ldl  194 (312)
                      ++ ++.+..|+..++|+.|+.+|||
T Consensus        78 v~-gg~p~~H~~~~~Nl~S~gtldl  101 (101)
T PF04526_consen   78 VQ-GGSPQPHPTSGANLQSKGTLDL  101 (101)
T ss_pred             cC-CCccccCCCCCccccceEEecC
Confidence            76 7899999999999999999997

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.77  E-value=2.2e-18  Score=141.70  Aligned_cols=94  Identities=30%  Similarity=0.405  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHh-hhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhHHHH
Q 021436          215 IHGVLNAVSWGILFPIGAIIARY-LRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIGIAL  292 (312)
Q Consensus       215 ~Hg~lm~iaw~~l~P~g~~~aR~-~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG~~v  292 (312)
                      +||++|+++|++++|.|++++|+ .+.  ..++.||++|+.+|+++++++++|+++++...++.+ ...++.|+++|+++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~--~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~   78 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRF--LSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA   78 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence            69999999999999999999998 332  246899999999999999999999999988766543 35678999999999


Q ss_pred             HHHHHHHHhhhhhccCCC
Q 021436          293 FSLATVQVTKALVVHDIN  310 (312)
Q Consensus       293 ~~l~~~Q~~~g~~r~~~~  310 (312)
                      +++.++|++.|++|+.++
T Consensus        79 ~~l~~~Q~~~G~~~~~~~   96 (129)
T smart00665       79 FVLAGLQWLSGFLRPLPP   96 (129)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999999885

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals

Probab=99.75  E-value=8.2e-17  Score=130.71  Aligned_cols=112  Identities=21%  Similarity=0.351  Sum_probs=90.1

Q ss_pred             CCeEEEEEEecCCCeEEEEEEeccCC-CCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEe-ecccccccCCCC--
Q 021436           50 LSSFLHFTYDASNRSLSIAFVAAPAK-SGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYN-VSSYESIVPTKK--  125 (312)
Q Consensus        50 ~~~~l~W~~~~~~~~~~i~f~~~~~~-~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~-~~g~~~p~~~~~--  125 (312)
                      .+..|.|+++.+++.+  .|+++++. ..||+|+||+++++ |.++|+++|+.+ +|++.+++++ ..++..|..+..  
T Consensus         3 ~~~~l~w~~~~~~~~i--~~~l~~~~~~~~w~aiGfs~~~~-M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~   78 (124)
T PF03351_consen    3 CNFSLSWTVDGDNNTI--EFELTGPANTNGWVAIGFSDDGG-MGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGS   78 (124)
T ss_pred             ceEEEEEEEECCCCEE--EEEEEeccCCCCEEEEEEccccC-CCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccC
Confidence            3467899998666554  55555443 38999999999887 999999999998 6999999999 899988887743  


Q ss_pred             eeEEeeccceEEeCCEEEEEEEEecCCccc------CCCceeEEeeec
Q 021436          126 LSFDVWDTSADESGGLMRIYGKVKVPEELA------KAGKLNQVWQVG  167 (312)
Q Consensus       126 ~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~------~~~~~~~iwa~G  167 (312)
                      .++.+.  ++.+++|.++|.|+|++.+++.      ...++++|||+|
T Consensus        79 ~~~~~~--~~~~~~g~~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G  124 (124)
T PF03351_consen   79 QDIQLL--SGSYSNGTTTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG  124 (124)
T ss_pred             CcEEEE--EEEEECCEEEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence            666655  4556899999999999998753      356789999987

It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.69  E-value=1.3e-16  Score=132.15  Aligned_cols=94  Identities=22%  Similarity=0.279  Sum_probs=81.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhHHHHH
Q 021436          215 IHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIGIALF  293 (312)
Q Consensus       215 ~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG~~v~  293 (312)
                      +|++||++||++++|.|++++|+.+..+.+++.|+++|+.+|.+++++.++|+++++...++.+ ...++.|.++|++++
T Consensus         1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~   80 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF   80 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence            5999999999999999999999744223357899999999999999999999999888655332 455789999999999


Q ss_pred             HHHHHHHhhhhhccC
Q 021436          294 SLATVQVTKALVVHD  308 (312)
Q Consensus       294 ~l~~~Q~~~g~~r~~  308 (312)
                      +++++|++.|++++.
T Consensus        81 ~l~~~Q~~~G~~~~~   95 (137)
T PF03188_consen   81 VLALLQPLLGFFRFF   95 (137)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999876

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.64  E-value=7.7e-16  Score=126.81  Aligned_cols=93  Identities=20%  Similarity=0.284  Sum_probs=82.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhHHH
Q 021436          213 RNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIGIA  291 (312)
Q Consensus       213 ~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG~~  291 (312)
                      .++|+++|.++|++++|.|++++|++|..  .++.|+++|+.+|.+++++.++|+++++...++.+ ...++.|.++|++
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~   79 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLA   79 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence            47899999999999999999999998765  46799999999999999999999999988664332 3457899999999


Q ss_pred             HHHHHHHHHhhhhhcc
Q 021436          292 LFSLATVQVTKALVVH  307 (312)
Q Consensus       292 v~~l~~~Q~~~g~~r~  307 (312)
                      ++++.++|++.|++++
T Consensus        80 ~~~l~~~q~~~G~~~~   95 (131)
T cd08554          80 TVLLFLLQFLSGFVLF   95 (131)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998885

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose

Probab=99.63  E-value=8.5e-15  Score=126.57  Aligned_cols=124  Identities=16%  Similarity=0.180  Sum_probs=96.3

Q ss_pred             CeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeecccccc-cCCCCeeEEeeccceEEeCCE
Q 021436           63 RSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESI-VPTKKLSFDVWDTSADESGGL  141 (312)
Q Consensus        63 ~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~~~p-~~~~~~~~~v~~~s~~~~~g~  141 (312)
                      +..|+++++++|.+.||+|+|+   |.+|.|+.++|+|++. ++|++++|+.+||.+| .++++..++++..+.. +++.
T Consensus        38 ~~~d~i~qi~aP~~~gW~gls~---Gg~M~~~~L~vaw~~g-~~Vt~S~R~atg~~~P~~y~g~a~~t~L~gs~v-n~t~  112 (184)
T cd00241          38 DSTEFIGELVAPRASGWIGLAL---GGAMTNSLLLVAWPNG-NQIVSSTRYATGYTLPDAYTGPATITQLPSSSV-NSTH  112 (184)
T ss_pred             CCCCEEEEEeCcCCCCeEEEee---cccCCCCeEEEEEcCC-CeEEEeEEEecCccCCCccCCCceEEECCCCcE-eCCE
Confidence            4569999999999999999997   7779999999999974 4699999999999999 4667778988876654 5888


Q ss_pred             EEEEEEEecCCccc-------C-CCceeEEeeec---CCCC--CCCCcccCCCCCCCCCCceEEecCCcc
Q 021436          142 MRIYGKVKVPEELA-------K-AGKLNQVWQVG---PSVT--PEGMIAKHDFAPPNLNSKGALDLSGAQ  198 (312)
Q Consensus       142 ~~~~~~~~l~~~~~-------~-~~~~~~iwa~G---~~~~--~~~~l~~H~~~g~n~~s~~~ldl~~g~  198 (312)
                      ++  ++++|++|..       + ...-.++||.+   +..+  ++..|.+|+..|     .+.+||..+.
T Consensus       113 ~t--~~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~G-----~f~~dl~~A~  175 (184)
T cd00241         113 WK--LVFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFG-----FFGINLSDAQ  175 (184)
T ss_pred             EE--EEEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCCc-----ceeEechhcc
Confidence            87  5777777742       1 11227899985   2221  567899999654     5999998653

It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=99.57  E-value=1.6e-14  Score=114.27  Aligned_cols=91  Identities=24%  Similarity=0.398  Sum_probs=78.4

Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCC-CcCCh
Q 021436          207 DSRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGV-TYTGH  285 (312)
Q Consensus       207 ~~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~-~~~~H  285 (312)
                      +..+.+.++|+++|.++|++++|+|+++.+. |      .   ++|..+|.++++++++|+.+|....+..++. .++.|
T Consensus        12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------s---r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H   81 (105)
T PF10348_consen   12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------S---RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAH   81 (105)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------c---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            3456789999999999999999999997543 2      2   3499999999999999999998877665444 68899


Q ss_pred             hhhHHHHHHHHHHHHhhhhhcc
Q 021436          286 RNIGIALFSLATVQVTKALVVH  307 (312)
Q Consensus       286 ~~lG~~v~~l~~~Q~~~g~~r~  307 (312)
                      .++|+++++++++|+++|++++
T Consensus        82 ~k~g~il~~l~~~q~~~gv~~~  103 (105)
T PF10348_consen   82 GKMGWILFVLMIVQVILGVILK  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.48  E-value=1.1e-13  Score=120.40  Aligned_cols=99  Identities=16%  Similarity=0.067  Sum_probs=80.6

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-CCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhh
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFE-SADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRN  287 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~-~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~  287 (312)
                      +.+.++|+++|.++|++++|.|++..|-.+..+ ..++.|+++|+.+|.+++++.++|+++.+...++.+ ...++.|.+
T Consensus        18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~   97 (183)
T cd08761          18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGI   97 (183)
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence            468999999999999999999999755322211 246789999999999999999999988776544322 345789999


Q ss_pred             hHHHHHHHHHHHHhhhhhccC
Q 021436          288 IGIALFSLATVQVTKALVVHD  308 (312)
Q Consensus       288 lG~~v~~l~~~Q~~~g~~r~~  308 (312)
                      +|++++++.++|++.|++++.
T Consensus        98 lGl~~~~l~~~Q~~~G~~~~~  118 (183)
T cd08761          98 LGLVTVILIVLQALGGLALLY  118 (183)
T ss_pred             HHHHHHHHHHHHHHHhHHHHh
Confidence            999999999999999997643

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=99.31  E-value=1e-11  Score=103.52  Aligned_cols=94  Identities=19%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhh
Q 021436          209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRN  287 (312)
Q Consensus       209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~  287 (312)
                      .....++|..||.+++.++++-++++.|..|   ..++.|..+|+.+|.+++++.++|+...+...++.+ ...++.|.+
T Consensus         4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~---~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSw   80 (144)
T cd08766           4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTVP---GSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSW   80 (144)
T ss_pred             CcceeeccHHHHHHHHHHHHHHHHHHhhccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHH
Confidence            3468899999999999999999999988654   345678899999999999999999988777655443 346789999


Q ss_pred             hHHHHHHHHHHHHhhhhh
Q 021436          288 IGIALFSLATVQVTKALV  305 (312)
Q Consensus       288 lG~~v~~l~~~Q~~~g~~  305 (312)
                      +|++++++..+|.+.|+.
T Consensus        81 lGl~t~~L~~lQ~~~G~~   98 (144)
T cd08766          81 LGIGTISLFGLQWLFGFV   98 (144)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998864

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=99.27  E-value=1.8e-11  Score=104.89  Aligned_cols=95  Identities=23%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhH
Q 021436          211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIG  289 (312)
Q Consensus       211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG  289 (312)
                      +..++|.+||.++++++...++++-|..+.++..+..|..+|..+|.++++++++|+...+...++.+ ...++.|.++|
T Consensus        33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlG  112 (179)
T cd08762          33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVG  112 (179)
T ss_pred             CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHH
Confidence            47899999999999999999988877555443356678999999999999999999999888776554 34578899999


Q ss_pred             HHHHHHHHHHHhhhhh
Q 021436          290 IALFSLATVQVTKALV  305 (312)
Q Consensus       290 ~~v~~l~~~Q~~~g~~  305 (312)
                      ++++++..+|.+.|++
T Consensus       113 l~t~~Lf~lQ~~~Gf~  128 (179)
T cd08762         113 ICTVALFTCQWVMGFT  128 (179)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998874

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02351 cytochromes b561 family protein

Probab=99.19  E-value=7.7e-11  Score=105.16  Aligned_cols=89  Identities=21%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             hh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC--CCCcCChhhh
Q 021436          212 KR-NIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK--GVTYTGHRNI  288 (312)
Q Consensus       212 ~~-~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~--~~~~~~H~~l  288 (312)
                      .. ++|.+||.++++++.+-+|++.|++|.   .++.|..+|+.+|.++++++++|+..  ...++.+  ...++.|.++
T Consensus        49 iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~~i~nlySLHSWl  123 (242)
T PLN02351         49 VYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDGIVANFYSLHSWM  123 (242)
T ss_pred             eeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCCccchhHHHHHH
Confidence            44 799999999999999999999998763   34569999999999999999999998  3333221  3468899999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 021436          289 GIALFSLATVQVTKALV  305 (312)
Q Consensus       289 G~~v~~l~~~Q~~~g~~  305 (312)
                      |++++++..+|.+.|+.
T Consensus       124 Gl~tv~Lf~lQwv~Gf~  140 (242)
T PLN02351        124 GLICVSLFGAQWLTGFM  140 (242)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998873

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=99.19  E-value=1.1e-10  Score=98.11  Aligned_cols=95  Identities=17%  Similarity=0.184  Sum_probs=80.2

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhH
Q 021436          211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIG  289 (312)
Q Consensus       211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG  289 (312)
                      ...++|.+||.+++.++..-++++-|..+..+..++.+-.+|+.+|.+++++.++|+...+...++.+ ...++.|.++|
T Consensus        10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlG   89 (153)
T cd08765          10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVG   89 (153)
T ss_pred             CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence            47899999999999999999999977544333345677899999999999999999998777655443 45689999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q 021436          290 IALFSLATVQVTKALV  305 (312)
Q Consensus       290 ~~v~~l~~~Q~~~g~~  305 (312)
                      ++++++..+|.+.|+.
T Consensus        90 l~t~~l~~lQ~~~Gf~  105 (153)
T cd08765          90 LAAVILYPLQLVLGIS  105 (153)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=99.12  E-value=2.2e-10  Score=101.40  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=79.3

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccC--C-CCCcCChh
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDS--K-GVTYTGHR  286 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~--~-~~~~~~H~  286 (312)
                      ...+++|.++|.+++.+++.-++++.|.+|..  ++..|..+|+.+|.++++++++|+...+...++.  + ...++.|.
T Consensus        21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS   98 (214)
T cd08764          21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS   98 (214)
T ss_pred             CceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence            35689999999999999999999999977643  3556778999999999999999988877655443  2 34588999


Q ss_pred             hhHHHHHHHHHHHHhhhh
Q 021436          287 NIGIALFSLATVQVTKAL  304 (312)
Q Consensus       287 ~lG~~v~~l~~~Q~~~g~  304 (312)
                      ++|++.+++..+|.+.|+
T Consensus        99 wlGl~t~~L~~lQ~~~Gf  116 (214)
T cd08764          99 WLGLTAVILFSLQWVGGF  116 (214)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999987

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=99.06  E-value=6.8e-10  Score=98.98  Aligned_cols=94  Identities=19%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhh
Q 021436          209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRN  287 (312)
Q Consensus       209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~  287 (312)
                      ....+++|.+||.+++.++.--+++.-|.   .+..++.+-.+|+.+|.+++++.++|+...++..++.+ ...++.|.+
T Consensus        43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~---~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSW  119 (232)
T PLN02680         43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKT---VPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSW  119 (232)
T ss_pred             CcceEechHHHHHHHHHHHHHHHHhcccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHH
Confidence            34588999999999999999999998554   44445677899999999999999999998777665443 356889999


Q ss_pred             hHHHHHHHHHHHHhhhhh
Q 021436          288 IGIALFSLATVQVTKALV  305 (312)
Q Consensus       288 lG~~v~~l~~~Q~~~g~~  305 (312)
                      +|++++++..+|.+.|+.
T Consensus       120 lGl~t~iL~~lQ~~~Gf~  137 (232)
T PLN02680        120 LGLACLFLFSLQWAAGFV  137 (232)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998874

>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]

Probab=99.05  E-value=1.2e-09  Score=104.38  Aligned_cols=123  Identities=13%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             ccccccccCCCC-CeEEEEEEecCCCeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeeccc
Q 021436           39 EIYAHCLDLPSL-SSFLHFTYDASNRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSY  117 (312)
Q Consensus        39 ~~~~~C~~l~~~-~~~l~W~~~~~~~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~  117 (312)
                      +.|.....+... +..|.|.++...+.+++.++..   ..+||++|||+.|. |.+||+++.|.+ .+...+.|++.+..
T Consensus        31 s~~~~h~~~~~e~~~~lsW~vdy~~q~i~F~l~~~---t~~~v~fGfSdrG~-lanaDivv~~n~-g~~~~~~DayTn~d  105 (603)
T KOG3568|consen   31 STYPHHTLLDSEGKYWLSWSVDYRGQQIAFRLQVR---TAGYVGFGFSDRGA-LANADIVVGGNA-GGRPYLQDAYTNAD  105 (603)
T ss_pred             CCccceeeecCCCcEEEEEeeccccceeEEEEEec---cCCEEEEecCCcCC-cccCcEEEEecc-CCchhhhhhhcCCC
Confidence            456666666544 5589999888777655555553   78999999999998 999999999964 55678889987766


Q ss_pred             ccccCCCCeeEEeeccceEEeCCEEEEEEEEecCCcccC-----CCceeEEeeecC
Q 021436          118 ESIVPTKKLSFDVWDTSADESGGLMRIYGKVKVPEELAK-----AGKLNQVWQVGP  168 (312)
Q Consensus       118 ~~p~~~~~~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~~-----~~~~~~iwa~G~  168 (312)
                      .+-..|.|+|++++...-  +....++.|+|++.+||.+     +++.+++||.-.
T Consensus       106 ~qi~~D~QQDyqll~~~e--~~~~~~i~frRkl~TCDp~Dy~i~dgTv~vv~a~~e  159 (603)
T KOG3568|consen  106 GQIKKDAQQDYQLLYAME--NSTHTIIEFRRKLHTCDPNDYSITDGTVRVVWAYLE  159 (603)
T ss_pred             CceecchhhhhHHHhhhc--cCCccEEEEecccCcCCccceeccCCeEEEEEEEec
Confidence            666677788888774332  2333446799999999863     668899999654

>PLN02810 carbon-monoxide oxygenase

Probab=99.04  E-value=9.6e-10  Score=97.42  Aligned_cols=92  Identities=21%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhh
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNI  288 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~l  288 (312)
                      ....++|.+||.+++.++..-++++-|.++.   .++.+-.+|+.+|.++++++++|+...+...++.+ ...++.|.++
T Consensus        44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl  120 (231)
T PLN02810         44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL  120 (231)
T ss_pred             CceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence            3478999999999999999999999776553   34567899999999999999999998888766554 4468999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 021436          289 GIALFSLATVQVTKAL  304 (312)
Q Consensus       289 G~~v~~l~~~Q~~~g~  304 (312)
                      |++++++..+|.+.|+
T Consensus       121 Gl~tv~Lf~lQw~~Gf  136 (231)
T PLN02810        121 GIGIISLYGIQWIYGF  136 (231)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999988

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=99.03  E-value=1.5e-09  Score=90.56  Aligned_cols=92  Identities=20%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhhH
Q 021436          211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNIG  289 (312)
Q Consensus       211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~lG  289 (312)
                      ...++|..+|.+++.+++--++++-|..+..  .++.+-.+|+.+|.+++++.++|+...+...++.+ ...++.|.++|
T Consensus         5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~--~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlG   82 (143)
T cd08763           5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNE--TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCG   82 (143)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence            3789999999999999999999998765543  34566789999999999999999998776544433 35689999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 021436          290 IALFSLATVQVTKAL  304 (312)
Q Consensus       290 ~~v~~l~~~Q~~~g~  304 (312)
                      ++.+++..+|.+.|+
T Consensus        83 l~t~~L~~lQ~~~G~   97 (143)
T cd08763          83 ILTFVLYFLQWLIGF   97 (143)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999885

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=98.73  E-value=1.3e-08  Score=90.13  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=80.6

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCC-CCCcCChhhh
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSK-GVTYTGHRNI  288 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~-~~~~~~H~~l  288 (312)
                      ++.+++|++||.++|..+---++++.|.+|.-  .++.=.-+|..+|+++++++++|+.-.+...+..+ ...++.|.++
T Consensus        52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl  129 (245)
T KOG1619|consen   52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL  129 (245)
T ss_pred             chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence            56889999999999999999999999987753  23444589999999999999999998888776554 3458899999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 021436          289 GIALFSLATVQVTKALV  305 (312)
Q Consensus       289 G~~v~~l~~~Q~~~g~~  305 (312)
                      |+.++.+..+|.+.|++
T Consensus       130 Gl~~v~ly~~Q~v~GF~  146 (245)
T KOG1619|consen  130 GLCVVILYSLQWVFGFF  146 (245)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998864

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=96.11  E-value=0.022  Score=46.45  Aligned_cols=93  Identities=20%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccC------CCCCcC
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDS------KGVTYT  283 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~------~~~~~~  283 (312)
                      .....+|.+++.++..+.. +|+.++=+.|... +++.+...|..+=+..+++.++=.+.|+......      +...+-
T Consensus        31 ~~~~~~H~~lq~~a~~~~~-~g~~~~~~~~~~~-~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~  108 (129)
T smart00665       31 PTWFLLHVVLQILALVLGV-IGLLAIFISHNES-GIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNP  108 (129)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHHHHcccc-CCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            4577999999999988765 5554443334321 2356778999999999988888777776643221      112234


Q ss_pred             ChhhhHHHHHHHHHHHHhhhh
Q 021436          284 GHRNIGIALFSLATVQVTKAL  304 (312)
Q Consensus       284 ~H~~lG~~v~~l~~~Q~~~g~  304 (312)
                      .|+.+|.+++.++.++..+|+
T Consensus       109 ~H~~~G~~~~~la~~~~~lG~  129 (129)
T smart00665      109 YHRFVGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            899999999999999998875

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=95.97  E-value=0.038  Score=45.11  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=67.7

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--ccC----CCCCc
Q 021436          209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SDS----KGVTY  282 (312)
Q Consensus       209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~~----~~~~~  282 (312)
                      +.....+|.+++.+++.+.. +|+.++=+.|.. .+.+.+...|..+=++++++.++-++.|+...  .+.    +...+
T Consensus        32 ~~~~~~~H~~l~~l~~~~~~-~G~~~~~~~~~~-~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~  109 (131)
T cd08554          32 KRALKLLHAILHLLAFVLGL-VGLLAVFLFHNA-GGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLL  109 (131)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccc-cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            34567899999999998775 555444344432 13445567999999999999888888886653  111    11235


Q ss_pred             CChhhhHHHHHHHHHHHHhhhh
Q 021436          283 TGHRNIGIALFSLATVQVTKAL  304 (312)
Q Consensus       283 ~~H~~lG~~v~~l~~~Q~~~g~  304 (312)
                      ..|+.+|.++++++..+..+|+
T Consensus       110 ~~H~~~G~~~~~la~~t~~~G~  131 (131)
T cd08554         110 PFHRFFGLAIFVLAIATILLGI  131 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999998874

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=95.88  E-value=0.028  Score=46.04  Aligned_cols=97  Identities=15%  Similarity=0.071  Sum_probs=68.2

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccc--cC----CCCC
Q 021436          208 SRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGS--DS----KGVT  281 (312)
Q Consensus       208 ~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~--~~----~~~~  281 (312)
                      ++....+.|.+++.++.....-..+++.. .|... +.+.+...|..+=++.+++.++=.++|+....  +.    +...
T Consensus        30 ~~~~~~~~H~~lq~l~~~~~~~G~~~~~~-~~~~~-~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~  107 (137)
T PF03188_consen   30 SRKWWFRIHWILQVLALVFAIIGFVAIFI-NKNRN-GKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW  107 (137)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHH-hcccc-CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence            34567899999999988766544444433 23322 23455678999988888888887777766432  11    1123


Q ss_pred             cCChhhhHHHHHHHHHHHHhhhhhc
Q 021436          282 YTGHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       282 ~~~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      ...|+.+|+++++++++++..|+..
T Consensus       108 ~~~H~~~G~~~~~l~~~~i~~G~~~  132 (137)
T PF03188_consen  108 NKWHRWLGYLIYVLAIATIFLGLTE  132 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4469999999999999999999853

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=95.69  E-value=0.067  Score=46.60  Aligned_cols=97  Identities=16%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccC---CCCCcCChh
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDS---KGVTYTGHR  286 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~---~~~~~~~H~  286 (312)
                      ....+.|..++.++..+.. +|..++-+.+  ..+.+.....|..+=++.+++.++=.++|+..-...   +...+-.|+
T Consensus        66 ~~~~~~H~~~q~~~~~~~i-~g~~~~~~~~--~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~  142 (191)
T cd08760          66 PVWFYLHAGLQLLAVLLAI-AGFVLGIVLV--QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHR  142 (191)
T ss_pred             chhHHHHHHHHHHHHHHHH-HHHHHHHHhh--ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHH
Confidence            4567899999998876655 4444433333  123344568999998888888888777787643222   223356899


Q ss_pred             hhHHHHHHHHHHHHhhhhhccCC
Q 021436          287 NIGIALFSLATVQVTKALVVHDI  309 (312)
Q Consensus       287 ~lG~~v~~l~~~Q~~~g~~r~~~  309 (312)
                      .+|.+++++..+|+.+|+.-...
T Consensus       143 ~~G~~~~~l~~v~i~~G~~~~~~  165 (191)
T cd08760         143 WLGRAALILAIVNIFLGLDLAGA  165 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999876554

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=95.46  E-value=0.048  Score=47.27  Aligned_cols=97  Identities=18%  Similarity=0.149  Sum_probs=68.1

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccc--------cCCC
Q 021436          208 SRTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGS--------DSKG  279 (312)
Q Consensus       208 ~~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~--------~~~~  279 (312)
                      ++....+.|++++.++..+.. +|..+.=+.|..+ +++.+-..|..+=+..+++.++=.+.|+....        +.+.
T Consensus        53 ~~~~~~~~H~~l~~la~~~~~-~G~~~~~~~~~~~-~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~  130 (183)
T cd08761          53 ARKTKVRLHWILQLLALLCIL-AGLVAIYYNKERN-GKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAK  130 (183)
T ss_pred             hhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhcccC-CCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHH
Confidence            344678999999999987765 4544333334322 34555678999988888888887777775321        1111


Q ss_pred             CCcCChhhhHHHHHHHHHHHHhhhhhc
Q 021436          280 VTYTGHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       280 ~~~~~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      .....|+.+|.++++++.++..+|+..
T Consensus       131 ~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761         131 KLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            234589999999999999999999854

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=92.57  E-value=0.5  Score=39.49  Aligned_cols=96  Identities=18%  Similarity=0.200  Sum_probs=66.7

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhc--cccC----CCCCc
Q 021436          209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--GSDS----KGVTY  282 (312)
Q Consensus       209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--~~~~----~~~~~  282 (312)
                      +...+.+|.+|..+|.... -+|+.++=..|... +.+.-..+|-.+=++++++..+=+..|+..  ..+.    +....
T Consensus        37 k~~~k~iH~~l~~la~~~~-vvGl~avf~~~~~~-~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~  114 (144)
T cd08766          37 REVQKAVHLTLHLVALVLG-IVGIYAAFKFHNEV-GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALL  114 (144)
T ss_pred             cchhHHHHHHHHHHHHHHH-HHHHHHHHHHhccc-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            3456789999999998765 45554443334322 233434689999999999888877777642  2111    11224


Q ss_pred             CChhhhHHHHHHHHHHHHhhhhhc
Q 021436          283 TGHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       283 ~~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      ..|+..|.+++++++....+|+..
T Consensus       115 p~H~~~G~~~~~la~~t~~lGl~e  138 (144)
T cd08766         115 PWHVFLGLAIYYLAIATAETGLLE  138 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999864

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=91.30  E-value=1.2  Score=37.23  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=66.4

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--ccC----CCCCcC
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SDS----KGVTYT  283 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~~----~~~~~~  283 (312)
                      .....+|.+|..+|.... -+|+.++=..|... +.|.---+|-.+=++++++...-++.|+...  .+.    +....-
T Consensus        38 ~~~k~~H~~L~~la~~~~-~~Gl~av~~~h~~~-~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p  115 (143)
T cd08763          38 RSTKILHGLLHIMALVIS-LVGLVAVFDYHQAN-GYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKP  115 (143)
T ss_pred             chhHHHHHHHHHHHHHHH-HHHHHHHHHHcccc-CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhH
Confidence            445679999999998655 45555443344332 3455568999999999998888788776542  111    111123


Q ss_pred             ChhhhHHHHHHHHHHHHhhhhhc
Q 021436          284 GHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       284 ~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      .|+..|++++++++....+|+..
T Consensus       116 ~H~~~G~~~f~la~~t~~lG~~e  138 (143)
T cd08763         116 LHEFFGRALFLSSVGTSLLGLTE  138 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999864

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=90.43  E-value=1.1  Score=37.81  Aligned_cols=96  Identities=13%  Similarity=0.119  Sum_probs=69.5

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc-----ccC-CCCCc
Q 021436          209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG-----SDS-KGVTY  282 (312)
Q Consensus       209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~-----~~~-~~~~~  282 (312)
                      +...+.+|.+|..+|.... -+|+.++=..|... +.|.-.-+|-.+=++++++...=++.|+...     +.+ +....
T Consensus        44 k~~~k~iH~~L~~~a~~~~-i~Gl~avf~~hn~~-~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~  121 (153)
T cd08765          44 KLLMKLIHAGLHILAFILA-IISVVAVFVFHNAK-NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALM  121 (153)
T ss_pred             chhhHHHHHHHHHHHHHHH-HHHHHHHHHHcccc-CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence            4467899999999998665 45555444444432 3456668999999999999888888886543     111 11234


Q ss_pred             CChhhhHHHHHHHHHHHHhhhhhc
Q 021436          283 TGHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       283 ~~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      ..|+..|++++++++.-..+|+..
T Consensus       122 p~H~~~G~~i~~Lai~t~~lG~~e  145 (153)
T cd08765         122 PLHVYSGLFIFGTVIATALMGITE  145 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999864

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=88.90  E-value=2.3  Score=37.91  Aligned_cols=95  Identities=17%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-CCCchhhhhhHHHHHHHHHHHHHHHHhhhhc--ccc-C---CCCCcC
Q 021436          211 KKRNIHGVLNAVSWGILFPIGAIIARYLRTFE-SADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--GSD-S---KGVTYT  283 (312)
Q Consensus       211 ~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~-~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--~~~-~---~~~~~~  283 (312)
                      +.+.+|.+|..+|..+. -+|+.++--.+... .+.+.-..+|-.+=+.++++..+-++.|+..  ..+ +   +.....
T Consensus        56 ~~k~~H~~L~~lAl~~~-ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p  134 (214)
T cd08764          56 RLKLLHAVLHLLAFILA-VIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLP  134 (214)
T ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhH
Confidence            45679999999998665 34433321112211 1234444689999999999888777777643  211 1   111234


Q ss_pred             ChhhhHHHHHHHHHHHHhhhhhc
Q 021436          284 GHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       284 ~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      .|+..|++++++++....+|+.-
T Consensus       135 ~H~~~Gl~~fvLaiaT~~lGl~e  157 (214)
T cd08764         135 LHVFFGLFIFVLAVATALLGITE  157 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999854

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=88.30  E-value=2.2  Score=38.46  Aligned_cols=96  Identities=18%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhc--ccc----CCCCCc
Q 021436          209 RTKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKL--GSD----SKGVTY  282 (312)
Q Consensus       209 ~~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~--~~~----~~~~~~  282 (312)
                      +...+.+|.+|..+|.... -+|+..+=.++... +.+.-..+|-.+=+.++++..+=++.|+..  ..+    .+....
T Consensus        76 k~~~K~iH~~L~~lA~~l~-vvGl~avfk~hn~~-~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~  153 (232)
T PLN02680         76 KNLKKLVHLTLQFLAFCLS-LIGVWAALKFHNEK-GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLL  153 (232)
T ss_pred             chhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccc-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence            3456789999999998766 55554433333322 334445789999999999888877777654  111    111123


Q ss_pred             CChhhhHHHHHHHHHHHHhhhhhc
Q 021436          283 TGHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       283 ~~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      ..|+..|++++++++....+|+..
T Consensus       154 p~H~~~G~~if~LaiaT~~lG~~E  177 (232)
T PLN02680        154 PWHVFFGIYIYALAVATATTGILE  177 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999864

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=85.50  E-value=3.8  Score=35.41  Aligned_cols=80  Identities=9%  Similarity=0.040  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccCCCCCcCChhhhHHHHHHHHHHHH
Q 021436          221 AVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLGSDSKGVTYTGHRNIGIALFSLATVQV  300 (312)
Q Consensus       221 ~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~~Q~  300 (312)
                      .+.|+.+.-+|-+..=|.+.    ++.+..-|...=+....+..+...+.-...++.+....+.|-.++++++++.+.|.
T Consensus        90 ll~~~~L~~lGG~~~~~~~~----~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~l~Lf~~q~  165 (175)
T PF13301_consen   90 LLAFMGLGALGGQLGTYRQN----GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLALLLFAWQA  165 (175)
T ss_pred             HHHHHHHHHHcchHHHHHcC----CCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            34577777777665555442    34333558887777777766666655444432222345689999999999999999


Q ss_pred             hhhh
Q 021436          301 TKAL  304 (312)
Q Consensus       301 ~~g~  304 (312)
                      +.|+
T Consensus       166 itG~  169 (175)
T PF13301_consen  166 ITGW  169 (175)
T ss_pred             HHHH
Confidence            9885

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=82.36  E-value=8.7  Score=33.28  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=65.2

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhHHHHHHHHHHHHHHHHhhhhcc--cc-C---CCCCcC
Q 021436          210 TKKRNIHGVLNAVSWGILFPIGAIIARYLRTFESADPAWFYLHVLCQSSAYAIGVAGWGTGLKLG--SD-S---KGVTYT  283 (312)
Q Consensus       210 ~~~~~~Hg~lm~iaw~~l~P~g~~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~lg~~~~--~~-~---~~~~~~  283 (312)
                      ...+..|.++..+|..+. -+|+..+=-++... +.+.-..+|-.+=+.++++..+=++.|+...  .. +   +....-
T Consensus        68 ~~~K~~H~~L~~~Al~~~-vvGl~avf~~hn~~-~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p  145 (179)
T cd08762          68 LPWKLLHAGLLLLAFILT-VIGLCAVFNFHNVH-HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKP  145 (179)
T ss_pred             hhHHHHHHHHHHHHHHHH-HHHHHHHHHhcccc-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhH
Confidence            446799999999998654 45544432233322 3455557899999998888877777776532  11 1   111234


Q ss_pred             ChhhhHHHHHHHHHHHHhhhhhc
Q 021436          284 GHRNIGIALFSLATVQVTKALVV  306 (312)
Q Consensus       284 ~H~~lG~~v~~l~~~Q~~~g~~r  306 (312)
                      .|...|++++++++....+|+..
T Consensus       146 ~H~~~G~~if~Laiat~~lGl~e  168 (179)
T cd08762         146 IHVFFGAMILVLSIASCISGINE  168 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999864

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
1d7b_A	186	Cellobiose dehydrogenase; B-type cytochrome, Met/H	99.77

>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*

Probab=99.77  E-value=5.4e-18  Score=146.25  Aligned_cols=137  Identities=12%  Similarity=0.128  Sum_probs=104.5

Q ss_pred             CCCeEEEEEEecC----CCeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeeccccccc-CC
Q 021436           49 SLSSFLHFTYDAS----NRSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIV-PT  123 (312)
Q Consensus        49 ~~~~~l~W~~~~~----~~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~~~p~-~~  123 (312)
                      ..+..+.|.+..+    +++.||+|+++.|.+.||+|||+   |.+|.|++|+|+|+++ |++++++|+.+||.+|. ++
T Consensus        22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~---Gg~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~   97 (186)
T 1d7b_A           22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIAL---GGAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYT   97 (186)
T ss_dssp             TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEET---TSSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECC
T ss_pred             CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEec---CCCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccC
Confidence            4456666665432    23468999999888899999998   5669999999999974 89999999999999997 78


Q ss_pred             CCeeEEeeccceEEeCCEEEEEEEEecCCccc---------CCCceeEEeeecCCCC-----CCCCcccCCCCCCCCCCc
Q 021436          124 KKLSFDVWDTSADESGGLMRIYGKVKVPEELA---------KAGKLNQVWQVGPSVT-----PEGMIAKHDFAPPNLNSK  189 (312)
Q Consensus       124 ~~~~~~v~~~s~~~~~g~~~~~~~~~l~~~~~---------~~~~~~~iwa~G~~~~-----~~~~l~~H~~~g~n~~s~  189 (312)
                      ++.+++++.++.+ +++++++  +++|++|..         +++. .++||+++...     ++..|.+|+.+|     .
T Consensus        98 ~~~~~~lL~gs~v-n~t~~~~--~f~C~~C~~w~~~g~~~~ts~~-~~iwA~~~~~p~~~~~~~a~~~~H~~~G-----~  168 (186)
T 1d7b_A           98 GTATLTTLPETTI-NSTHWKW--VFRCQGCTEWNNGGGIDVTSQG-VLAWAFSNVAVDDPSDPQSTFSEHTDFG-----F  168 (186)
T ss_dssp             SSCEEEECTTCEE-CSSEEEE--EEEEETTTBCTTSCBCCTTSEE-EEEEEEESSCCSCTTCTTCCCCCCSEEE-----E
T ss_pred             CCceEEEcccccE-eCCEEEE--EEEeCCCcccCCCCccccCCCC-eEEEEECCCCCCCCCCCcccchhhhCcc-----e
Confidence            8899999987654 5888874  556656632         1223 89999875421     356899998764     6


Q ss_pred             eEEecCCcc
Q 021436          190 GALDLSGAQ  198 (312)
Q Consensus       190 ~~ldl~~g~  198 (312)
                      +.+||..+.
T Consensus       169 ~~~dL~~a~  177 (186)
T 1d7b_A          169 FGIDYSTAH  177 (186)
T ss_dssp             EEEEGGGCB
T ss_pred             EEEEccccc
Confidence            999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1pl3a_	186	Cytochrome domain of cellobiose dehydrogenase {Fun	99.73

>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.73  E-value=1e-17  Score=142.71  Aligned_cols=124  Identities=12%  Similarity=0.109  Sum_probs=96.2

Q ss_pred             CeEEEEEEeccCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCcEEEEEEeeccccccc-CCCCeeEEeeccceEEeCCE
Q 021436           63 RSLSIAFVAAPAKSGGWIAWAINPTAPGMAGSQALVAYKDSKGAVTVKLYNVSSYESIV-PTKKLSFDVWDTSADESGGL  141 (312)
Q Consensus        63 ~~~~i~f~~~~~~~~gWVAiGfs~~g~~M~gsd~~I~~~~~~G~v~v~~~~~~g~~~p~-~~~~~~~~v~~~s~~~~~g~  141 (312)
                      ++.|+++++.+|.+.||+||||   |.+|.|++|+|+|++ +|++++++|+++||.+|. +++..++.++..+.+ +++.
T Consensus        40 ~~~d~i~qi~ap~~~GWvgiG~---gg~M~gs~l~V~w~~-~~~v~~S~R~atG~~~P~~~~~~~~~~~l~~s~v-n~t~  114 (186)
T d1pl3a_          40 QSTEFIGEVVAPIASKWIGIAL---GGAHNNDLLLVAWAN-GNQIVSSTRWATGYVQPTAYTGTATLTTLPETTI-NSTH  114 (186)
T ss_dssp             CCCCEEEEEEEETTCCEEEEET---TSSSSSSCEEEEEEE-TTEEEEEEEECSTTSCCEECCSSCEEEECTTCEE-CSSE
T ss_pred             CCcCEEEEEeCCCCCcEEEEEc---CCCCCCCcEEEEEec-CCeEEEEEEEecceeCCcccCCCceEEEccCceE-ECCE
Confidence            3569999999999999999998   556999999999997 689999999999999986 566677777766654 5888


Q ss_pred             EEEEEEEecCCccc--------CCCceeEEeeecCCCC-----CCCCcccCCCCCCCCCCceEEecCCcc
Q 021436          142 MRIYGKVKVPEELA--------KAGKLNQVWQVGPSVT-----PEGMIAKHDFAPPNLNSKGALDLSGAQ  198 (312)
Q Consensus       142 ~~~~~~~~l~~~~~--------~~~~~~~iwa~G~~~~-----~~~~l~~H~~~g~n~~s~~~ldl~~g~  198 (312)
                      ++.  +++|.+|..        .+....++||+++...     ++..|.+|+.+|     .+++||.++.
T Consensus       115 ~~~--~f~C~~C~~w~~~~~~~~~~~~~~iwA~~~~~p~~~~~~~~~i~~H~~~G-----~f~~dl~~a~  177 (186)
T d1pl3a_         115 WKW--VFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFG-----FFGIDYSTAH  177 (186)
T ss_dssp             EEE--EEEEETCSBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEE-----EEEEEGGGCB
T ss_pred             EEE--EEEEeccccccCCCcccCCCceEEEEEECCCCCCCCCCCccCcceecCCc-----eEEEEcccCc
Confidence            874  455555521        2445689999986421     467899998654     6999997754