Citrus Sinensis ID: 021481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccccccccccccccccHHHHccHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccEccccccccccccccccc
Coil and Loop (DISEMBL)
mysaihslpldgghpdfqggpldgtnlpgdaclvlttdpkprlrwTAELHDRFVDAVtqlggpdkatpktimrtmgvkGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVaesqdtgssttsstrmvaqdpndgyqVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSndcqgmvplenikmpSISELAAALEsknastiparigdcsvescltstsspvspmglgsqaaamkkrprplfgngeslplegnmrQEVEWVMPHIG
Flexible Loop (DISEMBL)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDavtqlggpdkatpktIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVaesqdtgssttsstrmvaqdpnDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFgngeslplegnmrqevewvmphig
Low Complexity Region (SEG)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDtgssttsstRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVaagleaareelselaIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered region (IsUnstruct)
*************************NLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK********DYVALEVSCV*****************************ALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIK***********************************************************************************
Disordered Region (DISOPRED)
********************************************WTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL***************************************************************************QLRIEAQGKYLQSI**************************************************************************************************************************WVMP***
Disordered Region (DISEMBL)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCV*****************AQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESC*********************KRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered Region (DISPRO)
****************************************PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA*******************************************GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.474	0.413	0.650	1e-53
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.451	0.341	0.461	1e-31
Q700D9	255	Putative Myb family trans	no	no	0.176	0.215	0.654	7e-14
Q93WJ9	403	Transcription repressor K	no	no	0.192	0.148	0.583	2e-13
Q941I2	322	Probable transcription fa	no	no	0.221	0.214	0.521	2e-13
Q9C616	388	Probable transcription fa	no	no	0.221	0.177	0.521	3e-13
Q0J235	532	Probable transcription fa	no	no	0.221	0.129	0.521	3e-13
Q9FJV5	276	Probable transcription fa	no	no	0.179	0.202	0.589	1e-12
Q9ZWJ9	664	Two-component response re	no	no	0.173	0.081	0.581	2e-10
Q9FGT7	635	Two-component response re	no	no	0.182	0.089	0.568	2e-10

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 124/163 (76%), Gaps = 15/163 (9%)

Query: 29  GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 88
           GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct: 23  GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query: 89  LQKYRLGKQACKETTENSKDDYVALEVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEA 148
           LQK+RLGKQ  KE  ++S  +         A + D   +  SS+ M++++ N+       
Sbjct: 83  LQKFRLGKQPHKEYGDHSTKE------GSRASAMDIQRNVASSSGMMSRNMNE------- 129

Query: 149 LRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 191
             +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct: 130 --MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 15/156 (9%)

Query: 40  KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQAC 99
           K R+RWT ELH+ FV+AV QLGG ++ATPK +++ +   GLT+YH+KSHLQKYR  +   
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK- 289

Query: 100 KETTENSKDDYVALEVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRL 159
            ET+E               E Q+     TS   + + D     ++T+ALR+QMEVQ+RL
Sbjct: 290 PETSE------------VTGEPQEK--KMTSIEDIKSLDMKTSVEITQALRLQMEVQKRL 335

Query: 160 HEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA 195
           HEQLE+QR LQL+IE QG+YLQ + EK  K  ++++
Sbjct: 336 HEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKS 371

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
          P PRLRWT ELH  FV AV  LGG  KATPK +++ M VKGLT+ H+KSHLQ YR
Sbjct: 22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT+ LH RFV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K   K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 46/69 (66%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT  LH  FV AV  LGG ++ATPK+++  M V+ LTL H+KSHLQ YR  K   K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Query: 101 ETTENSKDD 109
            TT + + D
Sbjct: 225 PTTSSGQSD 233

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 45/69 (65%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT  LH RFV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K   K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDK 273

Query: 101 ETTENSKDD 109
               + + D
Sbjct: 274 AAASSGQSD 282

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 45/69 (65%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACK 100
           PR+RWT+ LH RFV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K   K
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 101 ETTENSKDD 109
               +   D
Sbjct: 385 PAASSGPAD 393

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 41  PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 96
           PR+RWT+ LH  FV AV  LGG ++ATPK+++  M VK LTL H+KSHLQ YR  K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 40  KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
           KPR+ W+ ELH +FV AV QLG  DKA PK I+  M V GLT  ++ SHLQKYR+
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 37  TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
           T  KPR+ W+ ELH +FV AV QLG  DKA PK I+  M ++GLT  ++ SHLQKYRL
Sbjct: 191 TRKKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL 247

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
255554128	303	transcription factor, putative [Ricinus	0.971	1.0	0.846	1e-149
118486035	309	unknown [Populus trichocarpa]	0.980	0.990	0.826	1e-147
327412613	307	putative MYB transcription factor [Rosa	0.971	0.986	0.821	1e-140
224060385	285	predicted protein [Populus trichocarpa]	0.913	1.0	0.833	1e-139
302398985	307	MYBR domain class transcription factor [	0.983	1.0	0.801	1e-139
359477885	307	PREDICTED: uncharacterized protein LOC10	0.977	0.993	0.812	1e-137
224140815	280	predicted protein [Populus trichocarpa]	0.897	1.0	0.838	1e-134
449487536	315	PREDICTED: uncharacterized protein LOC10	0.974	0.965	0.753	1e-124
449432414	315	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.974	0.965	0.75	1e-124
18404044	295	myb family transcription factor [Arabido	0.907	0.959	0.696	1e-111

>gi|255554128|ref|XP_002518104.1| transcription factor, putative [Ricinus communis] gi|223542700|gb|EEF44237.1| transcription factor, putative [Ricinus communis]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/312 (84%), Positives = 289/312 (92%), Gaps = 9/312 (2%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQG  LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDFQGS-LDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAE 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG+Q+CKE+ ENSKD       + VAE
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGRQSCKESNENSKD-------ASVAE 111

Query: 121 SQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 180
           SQDTGSST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL
Sbjct: 112 SQDTGSSTSTSSRMIAQDVNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 171

Query: 181 QSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAAL 240
           QSILEKACKALNDQA V+AGLEAAREELSELAIKVSN+CQG+VP +N+KMPS+SELA AL
Sbjct: 172 QSILEKACKALNDQAAVSAGLEAAREELSELAIKVSNECQGIVPADNMKMPSLSELAVAL 231

Query: 241 ESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNM 300
           ESK+ S +PARIGDCSVESCLTST SPVSPMG+GS  A++KKRPRP+FGNG+SLPLEG+M
Sbjct: 232 ESKSTSNLPARIGDCSVESCLTSTGSPVSPMGVGSHTASIKKRPRPIFGNGDSLPLEGSM 291

Query: 301 RQEVEWVMPHIG 312
           RQEVEW+M +IG
Sbjct: 292 RQEVEWMMGNIG 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486035|gb|ABK94861.1| unknown [Populus trichocarpa]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/311 (82%), Positives = 280/311 (90%), Gaps = 5/311 (1%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQ   LDG NLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDFQAS-LDGINLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAE 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD  +A     VAE
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIA---PSVAE 115

Query: 121 SQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 180
           SQDTGSST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYL
Sbjct: 116 SQDTGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYL 175

Query: 181 QSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAAL 240
           QSILEKACKALNDQA+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL
Sbjct: 176 QSILEKACKALNDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAAL 235

Query: 241 ESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNM 300
            ++NAS +PARIGDCSVESCLTSTSSPVSPMG+GSQ A+ KKR RP+ GNG+SLP EGN 
Sbjct: 236 GNRNASNVPARIGDCSVESCLTSTSSPVSPMGVGSQVASTKKRSRPVLGNGDSLPFEGNF 295

Query: 301 RQEVEWVMPHI 311
           RQEVEW M +I
Sbjct: 296 RQEVEWTMSNI 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412613|emb|CCA29095.1| putative MYB transcription factor [Rosa rugosa] gi|327412625|emb|CCA29101.1| putative MYB transcription factor [Rosa rugosa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/314 (82%), Positives = 281/314 (89%), Gaps = 11/314 (3%)

Query: 1   MYSAIHSLPLDGG---HPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAV 57
           MYSA+HSLPLDGG   H +F G  LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAV
Sbjct: 1   MYSALHSLPLDGGVCGHGEFSGS-LDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAV 59

Query: 58  TQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSC 117
           TQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD       SC
Sbjct: 60  TQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKD------ASC 113

Query: 118 VAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQG 177
           +AESQDTGSS TSS R++AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQG
Sbjct: 114 IAESQDTGSSATSS-RVIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQG 172

Query: 178 KYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELA 237
           KYLQSILEKACKALNDQA  AAGLEAA+EELSELAIKVS+DCQGM PL+ IKM S+SE+A
Sbjct: 173 KYLQSILEKACKALNDQAATAAGLEAAKEELSELAIKVSSDCQGMAPLDTIKMQSLSEIA 232

Query: 238 AALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLE 297
           AA+E+K+AS + ARIG+CSV+SCLTST SP SPMG+ S AAAMKKR RP F NG+SLPLE
Sbjct: 233 AAIENKSASNVLARIGNCSVDSCLTSTGSPGSPMGMSSLAAAMKKRQRPFFSNGDSLPLE 292

Query: 298 GNMRQEVEWVMPHI 311
           GNMRQEVEW+M +I
Sbjct: 293 GNMRQEVEWMMSNI 306

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060385|ref|XP_002300173.1| predicted protein [Populus trichocarpa] gi|222847431|gb|EEE84978.1| predicted protein [Populus trichocarpa]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/294 (83%), Positives = 268/294 (91%), Gaps = 9/294 (3%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQ   LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAV QL
Sbjct: 1   MYSAIHSLPLDG-HGDFQAA-LDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVAQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAE 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD       + VAE
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKD-------ASVAE 111

Query: 121 SQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 180
           SQDTGSST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL
Sbjct: 112 SQDTGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 171

Query: 181 QSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAAL 240
           QSILEKACKALNDQA+  AGLEAAREELSELAIKVSN+  G+ PL+ +KMPSISELAAAL
Sbjct: 172 QSILEKACKALNDQAVATAGLEAAREELSELAIKVSNERAGIAPLDTMKMPSISELAAAL 231

Query: 241 ESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESL 294
           E+K+AS +PAR+GDCSVESCLTST SPVSPMG+G+Q A+ KKR RP+FGNG+SL
Sbjct: 232 ENKHASNVPARVGDCSVESCLTSTGSPVSPMGVGAQVASTKKRSRPVFGNGDSL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398985|gb|ADL36787.1| MYBR domain class transcription factor [Malus x domestica]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/312 (80%), Positives = 280/312 (89%), Gaps = 5/312 (1%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DF GG LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDF-GGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAE 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK +CK++ ENSKD   A   SC+AE
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKLSCKDSAENSKDGIAA---SCIAE 115

Query: 121 SQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 180
           SQDTGSS+  S+R++AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQ KYL
Sbjct: 116 SQDTGSSSAVSSRVIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQSKYL 175

Query: 181 QSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAAL 240
           QSILEKACKALNDQA  AAG+EAA+EELSELAI+VSNDC+G+VPL++ K+PS+SE+AAAL
Sbjct: 176 QSILEKACKALNDQAATAAGVEAAKEELSELAIRVSNDCEGIVPLDSTKIPSLSEIAAAL 235

Query: 241 ESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNM 300
           E+++ S + A +G+CSV+SCLTST SPV PM + S AAAMKKR RP FGNG+SLPLE NM
Sbjct: 236 ENRDVSNVMAHLGNCSVDSCLTSTGSPVLPMDMSSLAAAMKKRQRPFFGNGDSLPLESNM 295

Query: 301 RQEVEWVMPHIG 312
           RQEVEW+M +IG
Sbjct: 296 RQEVEWMMSNIG 307

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477885|ref|XP_002268698.2| PREDICTED: uncharacterized protein LOC100250267 [Vitis vinifera]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/314 (81%), Positives = 275/314 (87%), Gaps = 9/314 (2%)

Query: 1   MYSAIHSLPLDGG--HPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVT 58
           MYSAIHSLPLDGG  H DFQG  LDGTNLPGDACLVLTTDPKPRLRWTAELH+RFVDAVT
Sbjct: 1   MYSAIHSLPLDGGVAHADFQGS-LDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVT 59

Query: 59  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCV 118
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE T+N K      E SC+
Sbjct: 60  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKELTDNCK------EASCI 113

Query: 119 AESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGK 178
           AESQDTGSS+TSS+RM+ QD NDGYQVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGK
Sbjct: 114 AESQDTGSSSTSSSRMIPQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGK 173

Query: 179 YLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAA 238
           YLQSILEKACKAL DQA   AGLEAAREELSEL IKVSNDC+GM PLE IKMP +SE+AA
Sbjct: 174 YLQSILEKACKALKDQAAATAGLEAAREELSELQIKVSNDCEGMNPLETIKMPCLSEIAA 233

Query: 239 ALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEG 298
           ALE+KNA  +PARIGDCSV+SCLTS+ SP+SPMG  S+ A MKKR RPLF  G SL LE 
Sbjct: 234 ALENKNAVNVPARIGDCSVDSCLTSSGSPISPMGASSRGAVMKKRSRPLFTGGSSLALEN 293

Query: 299 NMRQEVEWVMPHIG 312
           NMRQ+VEW+M ++G
Sbjct: 294 NMRQDVEWMMTNMG 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140815|ref|XP_002323774.1| predicted protein [Populus trichocarpa] gi|222866776|gb|EEF03907.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/285 (83%), Positives = 259/285 (90%), Gaps = 5/285 (1%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYSAIHSLPLDG H DFQ   LDG NLPGDACLVLTTDPKPRLRWTAELH+RFVDAVTQL
Sbjct: 1   MYSAIHSLPLDG-HGDFQAS-LDGINLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQL 58

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAE 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD  +A     VAE
Sbjct: 59  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIA---PSVAE 115

Query: 121 SQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 180
           SQDTGSST++S+RM+AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYL
Sbjct: 116 SQDTGSSTSASSRMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYL 175

Query: 181 QSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAAL 240
           QSILEKACKALNDQA+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL
Sbjct: 176 QSILEKACKALNDQAVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAAL 235

Query: 241 ESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPR 285
            ++NAS +PARIGDCSVESCLTSTSSPVSPMG+GSQ A+ KKR R
Sbjct: 236 GNRNASNVPARIGDCSVESCLTSTSSPVSPMGVGSQVASTKKRSR 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487536|ref|XP_004157675.1| PREDICTED: uncharacterized protein LOC101223852 [Cucumis sativus]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/312 (75%), Positives = 268/312 (85%), Gaps = 8/312 (2%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYS I +LP+DGG   FQG  LDGTNLPGDACLVLT+DPKPRLRWTAELH+RFVDAVTQL
Sbjct: 12  MYSTITALPMDGGGGKFQGS-LDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQL 70

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAE 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD       SC+AE
Sbjct: 71  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKD------ASCIAE 124

Query: 121 SQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 180
           SQ+T SS++ S+R++AQD NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYL
Sbjct: 125 SQETSSSSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYL 184

Query: 181 QSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAAL 240
           QSILE+AC+AL+DQA  +AGLEAAREELSELAIKVSND + M PLE  K    SELAAAL
Sbjct: 185 QSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKALPFSELAAAL 244

Query: 241 ESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNM 300
           E++ A T+  RIGDCS++SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN 
Sbjct: 245 ENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNA 303

Query: 301 RQEVEWVMPHIG 312
           R +VEW+M +IG
Sbjct: 304 RHDVEWMMSNIG 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432414|ref|XP_004133994.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213244 [Cucumis sativus]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/312 (75%), Positives = 268/312 (85%), Gaps = 8/312 (2%)

Query: 1   MYSAIHSLPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQL 60
           MYS I +LP+DGG   FQG  LDGTNLPGDACLVLT+DPKPRLRWTAELH+RFVDAVTQL
Sbjct: 12  MYSTITALPMDGGGGKFQGS-LDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQL 70

Query: 61  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAE 120
           GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD       SC+AE
Sbjct: 71  GGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKD------ASCIAE 124

Query: 121 SQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL 180
           SQ+T SS++ S+R++AQD NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYL
Sbjct: 125 SQETSSSSSPSSRIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYL 184

Query: 181 QSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAAL 240
           QSILE+AC+AL+DQA  +AGLEAAREELSELAIKVSND + M PLE  K+   SELAAAL
Sbjct: 185 QSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAAL 244

Query: 241 ESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNM 300
           E++ A T+  RIGDCS++SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN 
Sbjct: 245 ENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNA 303

Query: 301 RQEVEWVMPHIG 312
           R +V W+M +IG
Sbjct: 304 RHDVXWMMSNIG 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404044|ref|NP_566744.1| myb family transcription factor [Arabidopsis thaliana] gi|15215654|gb|AAK91372.1| AT3g24120/MUJ8_3 [Arabidopsis thaliana] gi|20334892|gb|AAM16202.1| AT3g24120/MUJ8_3 [Arabidopsis thaliana] gi|21594046|gb|AAM65964.1| transfactor, putative [Arabidopsis thaliana] gi|332643338|gb|AEE76859.1| myb family transcription factor [Arabidopsis thaliana]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/316 (69%), Positives = 244/316 (77%), Gaps = 33/316 (10%)

Query: 1   MYSAIHSLPLDGGH--PDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVT 58
           MYSAI SLPLDGGH   D+ G PLDGTNLPGDACLVLTTDPKPRLRWT ELH+RFVDAVT
Sbjct: 1   MYSAIRSLPLDGGHVGGDYHG-PLDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVT 59

Query: 59  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCV 118
           QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQK+RLG+QA KE+TENSKD       SCV
Sbjct: 60  QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAGKESTENSKD------ASCV 113

Query: 119 AESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGK 178
            ESQDTGSS+TSS RM  Q+ N+GYQVTEALR QMEVQRRLH+QLEVQRRLQLRIEAQGK
Sbjct: 114 GESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEVQRRLQLRIEAQGK 173

Query: 179 YLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGM-VPLEN----IKMPSI 233
           YLQSILEKACKA ++QA   AGLEAAREELSELAIKVSN  QG  VP  +    + MPS+
Sbjct: 174 YLQSILEKACKAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMMMPSL 233

Query: 234 SELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGES 293
           SELA A+++KN  T      +CSVES LTS +      G    AA+MKKR R     G++
Sbjct: 234 SELAVAIDNKNNITT-----NCSVESSLTSITH-----GSSISAASMKKRQR-----GDN 278

Query: 294 LPLEGNMRQEVEWVMP 309
           L     +  E  W+MP
Sbjct: 279 L----GVGYESGWIMP 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.858	0.899	0.654	1.8e-87
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.894	0.945	0.618	1.3e-86
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.727	0.576	0.464	6.9e-47
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.474	0.413	0.638	1.1e-46
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.746	0.579	0.458	7.1e-45
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.467	0.621	0.556	1.8e-39
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.733	0.679	0.430	2.9e-39
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.5	0.590	0.543	1.6e-38
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.435	0.302	0.490	2.1e-32
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.451	0.341	0.448	1.6e-29

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 193/295 (65%), Positives = 212/295 (71%)

Query:     1 MYSAIHSLPLDGGHP--DFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVT 58
             MYSAI SLPLDGGH   D+ G PLDGTNLPGDACLVLTTDPKPRLRWT ELH+RFVDAVT
Sbjct:     1 MYSAIRSLPLDGGHVGGDYHG-PLDGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVT 59

Query:    59 QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCV 118
             QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQK+RLG+QA KE+TENSKD       SCV
Sbjct:    60 QLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQAGKESTENSKD------ASCV 113

Query:   119 AESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEA 175
              ESQD         RM  Q+ N+GYQVTEALR QMEVQRRLH+QLE   VQRRLQLRIEA
Sbjct:   114 GESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQMEVQRRLHDQLEYGQVQRRLQLRIEA 173

Query:   176 QGKYLQSILEKACKALNDQAIVXXXXXXXXXXXXXXXIKVSNDCQGM-VPL----ENIKM 230
             QGKYLQSILEKACKA ++QA                 IKVSN  QG  VP     + + M
Sbjct:   174 QGKYLQSILEKACKAFDEQAATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMMM 233

Query:   231 PSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPR 285
             PS+SELA A+++KN  T      +CSVES LTS +      G    AA+MKKR R
Sbjct:   234 PSLSELAVAIDNKNNITT-----NCSVESSLTSITH-----GSSISAASMKKRQR 278

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 198/320 (61%), Positives = 224/320 (70%)

Query:     1 MYSAIHS-LPLDGGHPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQ 59
             MYSAI S LPLDG   D+     DGTNLP DACLVLTTDPKPRLRWT+ELH+RFVDAVTQ
Sbjct:     1 MYSAIRSSLPLDGSLGDYS----DGTNLPIDACLVLTTDPKPRLRWTSELHERFVDAVTQ 56

Query:    60 LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVA 119
             LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQK+RLG+Q+CKE+ +NSKD      VSCVA
Sbjct:    57 LGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLGRQSCKESIDNSKD------VSCVA 110

Query:   120 ESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEAQ 176
             ESQD         R+ AQ+ N+ YQVTEALR QMEVQRRLHEQLE   VQRRLQLRIEAQ
Sbjct:   111 ESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQMEVQRRLHEQLEYTQVQRRLQLRIEAQ 170

Query:   177 GKYLQSILEKACKALNDQAIVXXXXXXXXXXXXXXXIKVS--NDCQGMVP-LENIKM--P 231
             GKYLQSILEKACKA+ +QA+                IK S  N CQG     +  KM  P
Sbjct:   171 GKYLQSILEKACKAIEEQAVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTTKMMIP 230

Query:   232 SISELAAALESKNASTIPARIGDCSVESCLTSTS--SPVSPMGLGSQAAAMKKRPRPLFG 289
             S+SELA A+E KN         +CS ES LTS++  SPVS       AA MKKR R +FG
Sbjct:   231 SLSELAVAIEHKN---------NCSAESSLTSSTVGSPVS-------AALMKKRQRGVFG 274

Query:   290 NGESLPLEGNMRQEVEWVMP 309
             NG+S+ + G+   +  WVMP
Sbjct:   275 NGDSVVV-GH---DAGWVMP 290

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 111/239 (46%), Positives = 143/239 (59%)

Query:    26 NLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHL 85
             N PGD+ L+L+TD KPRL+WT +LH+RF++AV QLGG DKATPKTIM+ MG+ GLTLYHL
Sbjct:    31 NSPGDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHL 90

Query:    86 KSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXXXRMVAQDPNDGYQV 145
             KSHLQKYRL K    +   N+  + + + ++ + E              +   PN    +
Sbjct:    91 KSHLQKYRLSKNLNGQA--NNSFNKIGI-MTMMEEKTPDADEIQSENLSIGPQPNKNSPI 147

Query:   146 TEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVXXXXXXXX 205
              EAL++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQS+LEKA + L  Q +         
Sbjct:   148 GEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAAGIEAAK 207

Query:   206 XXXXXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTST 264
                     KVS +     P  +   P   EL      +  +  P    DCS+ESCLTS+
Sbjct:   208 VQLSELVSKVSAE----YPNSSFLEPK--ELQNLCSQQMQTNYPP---DCSLESCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 104/163 (63%), Positives = 120/163 (73%)

Query:    29 GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 88
             GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82

Query:    89 LQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEA 148
             LQK+RLGKQ  KE  ++S  +         A + D          M++++ N+       
Sbjct:    83 LQKFRLGKQPHKEYGDHSTKE------GSRASAMDIQRNVASSSGMMSRNMNE------- 129

Query:   149 LRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 191
               +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct:   130 --MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 115/251 (45%), Positives = 149/251 (59%)

Query:    14 HPDFQGGPLDGTNLPGDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMR 73
             HP  +G   +GT   GD+ L+L+TD KPRL+WT +LH+RFV+AV QLGG DKATPKTIM+
Sbjct:    25 HPFLRG---NGT---GDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMK 78

Query:    74 TMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXXXR 133
              MG+ GLTLYHLKSHLQKYRL K    +   NS  +  ++ ++ V E+            
Sbjct:    79 VMGIPGLTLYHLKSHLQKYRLSKNLNGQA--NSSLNKTSV-MTMVEENPPEVDESHSESL 135

Query:   134 MVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALND 193
              +   P+    +++AL++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQSILEKA + L  
Sbjct:   136 SIGPQPSMNLPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGR 195

Query:   194 QAIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIG 253
             Q +                 KVS D     P  +   P   EL      +   T P    
Sbjct:   196 QNLGAAGIEATKAQLSELVSKVSAD----YPDSSFLEPK--ELQNLHHQQMQKTYPP--- 246

Query:   254 DCSVESCLTST 264
             + S++SCLTS+
Sbjct:   247 NSSLDSCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 88/158 (55%), Positives = 110/158 (69%)

Query:    33 LVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92
             LVLTTDPKPRLRWT ELH+RFVDAVT LGGP+KATPKTIMR MGVKGLTLYHLKSHLQK+
Sbjct:    16 LVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKF 75

Query:    93 RLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXXXRMVAQDPND-GYQVTEALRV 151
             RLGKQ  KE ++N           C+ ++            +    P   G  + E   +
Sbjct:    76 RLGKQPHKEHSQNHS--------ICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNE---M 124

Query:   152 QMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 189
             QMEVQRR+ E++ ++R++  RI AQGKY++S+LEKAC+
Sbjct:   125 QMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACE 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 102/237 (43%), Positives = 134/237 (56%)

Query:    33 LVLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92
             LVL+TD KPRL+WT +LH +F++AV QLGGP+KATPK +M+ M + GLTLYHLKSHLQKY
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    93 RLGKQACKETTENSKDDYVALEVSCVAESQDXXXXXXXXXRMVAQDP-ND-GYQVTEALR 150
             RLGK    +  +N  +   A E   V    D              +P  D G Q+TEAL+
Sbjct:    87 RLGKSM--KFDDNKLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRGLQITEALQ 144

Query:   151 VQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVXXXXXXXXXXXXX 210
             +QMEVQ++LHEQ+EVQR LQ++IEAQGKYLQS+L KA + L   +               
Sbjct:   145 MQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTELSR 204

Query:   211 XXIKVSNDCQGMVPLENIKMPSISE-LAAALESKNASTIPARIGDCSVESCLTSTSS 266
                 V+  C      E  ++    E      + +N      R   CSVES LTS+ +
Sbjct:   205 LASMVNRGCPSTSFSELTQVEEEEEGFLWYKKPENRGISQLR---CSVESSLTSSET 258

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 87/160 (54%), Positives = 114/160 (71%)

Query:    34 VLTTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
             ++T DPKPRLRWTA+LHDRFVDAV +LGG DKATPK++++ MG+KGLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    94 LGKQACKET--TENSKDDYVALEVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRV 151
             LG+Q  K+   TE +K++  +  V     SQ              Q  N  +   EA+R 
Sbjct:    61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPF--AEAMRH 118

Query:   152 QMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 191
             Q++ Q+R  EQLEVQ++LQ+R+EAQGKYL ++LEKA K+L
Sbjct:   119 QVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSL 158

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 74/151 (49%), Positives = 101/151 (66%)

Query:    40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQAC 99
             K R+RWT ELH+ FV AV +L GP+KATPK + + M V+GLT+YH+KSHLQKYRL K   
Sbjct:   241 KSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMP 300

Query:   100 KETTENSKDDYVALEVSCVAESQDXXXXXXXXXRMVAQDPNDG-YQVTEALRVQMEVQRR 158
             ++  E   D+    +++ +++S+             A +   G  Q+TEALR+QMEVQ++
Sbjct:   301 EKKEEKRTDNSEEKKLA-LSKSE-------------ADEKKKGAIQLTEALRMQMEVQKQ 346

Query:   159 LHEQLEVQRRLQLRIEAQGKYLQSILEKACK 189
             LHEQLEVQR LQLRIE   KYL+ +LE+  K
Sbjct:   347 LHEQLEVQRVLQLRIEEHAKYLEKMLEEQRK 377

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 70/156 (44%), Positives = 99/156 (63%)

Query:    40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQAC 99
             K R+RWT ELH+ FV+AV QLGG ++ATPK +++ +   GLT+YH+KSHLQKYR  +   
Sbjct:   231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK- 289

Query:   100 KETTENSKDDYVALEVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQMEVQRRL 159
              ET+E               E Q+         + +  D     ++T+ALR+QMEVQ+RL
Sbjct:   290 PETSE------------VTGEPQEKKMTSIEDIKSL--DMKTSVEITQALRLQMEVQKRL 335

Query:   160 HEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA 195
             HEQLE+QR LQL+IE QG+YLQ + EK  K  ++++
Sbjct:   336 HEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKS 371

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	4e-26
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-24
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-08

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 97.3 bits (243), Expect = 4e-26
 Identities = 42/51 (82%), Positives = 46/51 (90%)

Query: 142 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN 192
           G Q+TEALR+QMEVQRRLHEQLEVQR LQ+RIEAQGKYLQ ILEKA K L+
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 93.2 bits (232), Expect = 2e-24
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 96
          KPR+ WT +LHDRF+ AV +LGGPD ATPK I+  M V GLT   + SHLQKYRL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 40  KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
           K ++ WT ELH RFV AV QLG  +KA P  I+  MGV+ LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93
          R  WT E  +  ++AV + G  +      I + +   G T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.93
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.42
smart00426	68	TEA TEA domain.	90.48
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	87.29

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.93  E-value=2.5e-26  Score=168.64  Aligned_cols=51  Identities=88%  Similarity=1.125  Sum_probs=48.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 021481          142 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN  192 (312)
Q Consensus       142 ~~qi~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLQsiLekaqe~La  192 (312)
                      +++|+||||+||||||||||||||||+||+|||||||||++|||||+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999864

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=4.7e-24  Score=207.81  Aligned_cols=62  Identities=48%  Similarity=0.748  Sum_probs=59.0

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481           36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (312)
Q Consensus        36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~   98 (312)
                      ...+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~  292 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH  292 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence            34789999999999999999999999 799999999999999999999999999999999875

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=5e-22  Score=147.95  Aligned_cols=56  Identities=63%  Similarity=0.997  Sum_probs=54.3

Q ss_pred             CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481           40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG   95 (312)
Q Consensus        40 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~   95 (312)
                      |+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.42  E-value=0.00036  Score=49.10  Aligned_cols=48  Identities=31%  Similarity=0.439  Sum_probs=41.6

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 021481           42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR   93 (312)
Q Consensus        42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR   93 (312)
                      |-.||+|=++.|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999993 2  6899999998 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=90.48  E-value=0.3  Score=38.56  Aligned_cols=46  Identities=24%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCChh-HHHhh---hC-----------CCCC--CHHHHHHhhhh
Q 021481           44 RWTAELHDRFVDAVTQLGGPDKATPK-TIMRT---MG-----------VKGL--TLYHLKSHLQK   91 (312)
Q Consensus        44 rWT~ELH~rFV~AV~qLGG~~kAtPK-~IL~l---M~-----------v~gL--T~~hVkSHLQK   91 (312)
                      .|.++|-..|++|+...- + ..+-| .+...   .|           ..|.  |+.+|.||+|.
T Consensus         5 vWp~~lE~Af~~aL~~~~-~-~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC-c-cCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998775 2 22222 22211   01           2454  77899999984

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=87.29  E-value=1.5  Score=32.85  Aligned_cols=34  Identities=44%  Similarity=0.498  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 021481          157 RRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL  191 (312)
Q Consensus       157 rrLhEQLEVQR~LQlRIEAQGKYLQsiLekaqe~L  191 (312)
                      .-|..|+||||+|.=.+|.|.+ ||.-+|...+-|
T Consensus         6 EALr~QmEvQrrLhEQLEvQr~-Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQRH-LQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence            4577899999999999998855 665565555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		1e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95
          T   KPR+ WT ELH++F+ AV  L G ++A PK I+  M V  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-26

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 98.5 bits (245), Expect = 1e-26
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95
          T   KPR+ WT ELH++F+ AV  LG  ++A PK I+  M V  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 96 KQ 97
           +
Sbjct: 60 LK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	90.34
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	87.93
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	87.26
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	87.14
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	86.22
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	83.38
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	83.07
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	83.07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=5.4e-30  Score=194.30  Aligned_cols=62  Identities=45%  Similarity=0.763  Sum_probs=58.9

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481           36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (312)
Q Consensus        36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~   98 (312)
                      ++++|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 799999999999999999999999999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.34  E-value=0.48  Score=35.06  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=41.7

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCCh---hHHHhhhCCCCCCHHHHHHhhhhhhccc
Q 021481           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATP---KTIMRTMGVKGLTLYHLKSHLQKYRLGK   96 (312)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~~   96 (312)
                      ...+-.||+|=++.|+++|..+| .+...|   +.|-+.|  +|=|..+|+.|.++|-...
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            34455899999999999999999 333223   4555554  7899999999999997643

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=87.93  E-value=1.3  Score=33.85  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=40.9

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhc
Q 021481           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL   94 (312)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl   94 (312)
                      ...+-.||+|=+.+|++||...|+    .=+.|-+.|  ++=|..+++.|.++|-+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLPI   64 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence            344678999999999999999994    346777776  47899999999998744

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.26  E-value=1.7  Score=31.98  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=41.3

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG   95 (312)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~   95 (312)
                      ...+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|..+|+.|.++|-..
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence            345668999999999999999993    44666665  4789999999999988544

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=87.14  E-value=2.2  Score=30.41  Aligned_cols=51  Identities=22%  Similarity=0.210  Sum_probs=40.4

Q ss_pred             CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhc
Q 021481           39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL   94 (312)
Q Consensus        39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl   94 (312)
                      .-.|-.||+|=.++|++||..+| .  ..=+.|-+.|  +|=|-.+++.|.++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            44566899999999999999999 1  1346676666  68899999999988754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=86.22  E-value=1.3  Score=44.37  Aligned_cols=55  Identities=25%  Similarity=0.354  Sum_probs=45.8

Q ss_pred             CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481           38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (312)
Q Consensus        38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~   98 (312)
                      ..+..-+||+|=|..|++|+.+.|   + .=+.|-+.++-.  |..+|++|.++||.....
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~l  430 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGNK--SVVQVKNFFVNYRRRFNI  430 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSSC--CHHHHHHHHHHTTTTTTH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCCC--CHHHHHHHHHHHHHHhCh
Confidence            346778999999999999999999   2 478888887654  899999999999886543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=83.38  E-value=2  Score=39.62  Aligned_cols=56  Identities=21%  Similarity=0.272  Sum_probs=46.4

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhcccc
Q 021481           36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ   97 (312)
Q Consensus        36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~   97 (312)
                      .+..+..-+||+|=++.|++|+...|-    .=..|-++  |++=|..+|++|..+||....
T Consensus       127 e~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          127 EVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence            345577889999999999999999992    36778777  578899999999999986533

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=83.07  E-value=1.5  Score=34.54  Aligned_cols=58  Identities=24%  Similarity=0.346  Sum_probs=36.7

Q ss_pred             CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhh---h-C-----------C--CCCCHHHHHHhhhhhhcccc
Q 021481           38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRT---M-G-----------V--KGLTLYHLKSHLQKYRLGKQ   97 (312)
Q Consensus        38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~l---M-~-----------v--~gLT~~hVkSHLQKYRl~~~   97 (312)
                      +++..=+|.++|-..|++|+...--....  |-+|..   | |           .  +-=|+.+|.||||.-+..+.
T Consensus         2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~   76 (82)
T 2hzd_A            2 DNDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS   76 (82)
T ss_dssp             CGGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence            34556689999999999999877511122  222311   1 1           1  23478899999997665443

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=83.07  E-value=1.6  Score=32.94  Aligned_cols=48  Identities=17%  Similarity=0.377  Sum_probs=37.6

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCChh---HHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481           42 RLRWTAELHDRFVDAVTQLGGPDKATPK---TIMRTMGVKGLTLYHLKSHLQKYRLG   95 (312)
Q Consensus        42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYRl~   95 (312)
                      +-.||.|=+..|+.|+..+++   -||.   .|-+.|   |=|..+|+.|.+++...
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence            346999999999999999983   2665   455555   67999999998876443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-24

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.9 bits (228), Expect = 2e-24
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94
          T   KPR+ WT ELH++F+ AV  LG  ++A PK I+  M V  LT  ++ SHLQK+R+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	91.4
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	90.14

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=4.3e-27  Score=176.42  Aligned_cols=62  Identities=45%  Similarity=0.755  Sum_probs=58.3

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481           36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA   98 (312)
Q Consensus        36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~   98 (312)
                      |.++|+|++||+|||++||+||++||+ +.||||.|+++|+|+|||+.||+|||||||+..++
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            467999999999999999999999985 89999999999999999999999999999998654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.2  Score=34.50  Aligned_cols=49  Identities=22%  Similarity=0.390  Sum_probs=40.4

Q ss_pred             CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccc
Q 021481           42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK   96 (312)
Q Consensus        42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~   96 (312)
                      ..+||+|=++.|++||...|.    .=..|-+.|  ++=|..+|++|.++|-...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999993    456776665  5889999999999886543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.34  Score=31.98  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=36.1

Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481           44 RWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY   92 (312)
Q Consensus        44 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY   92 (312)
                      .||+|=+.+|++||.+.| .  ..=+.|-+.|+  +=|..+++.|.++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999999 1  13566777765  66999999999887